Multiple sequence alignment - TraesCS1A01G129400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G129400 chr1A 100.000 6941 0 0 2082 9022 165178777 165171837 0.000000e+00 12818.0
1 TraesCS1A01G129400 chr1A 100.000 1741 0 0 1 1741 165180858 165179118 0.000000e+00 3216.0
2 TraesCS1A01G129400 chr1A 97.965 1327 24 3 1 1327 165201196 165199873 0.000000e+00 2298.0
3 TraesCS1A01G129400 chr1A 96.910 1327 39 2 1 1327 70346716 70345392 0.000000e+00 2222.0
4 TraesCS1A01G129400 chr1A 85.000 140 11 3 8772 8906 26491318 26491452 5.680000e-27 134.0
5 TraesCS1A01G129400 chr1B 96.082 3012 84 13 4834 7833 202009797 202006808 0.000000e+00 4878.0
6 TraesCS1A01G129400 chr1B 96.709 2674 60 7 2082 4752 202012444 202009796 0.000000e+00 4425.0
7 TraesCS1A01G129400 chr1B 95.400 413 12 2 7825 8235 202006778 202006371 0.000000e+00 651.0
8 TraesCS1A01G129400 chr1B 93.701 254 14 2 1471 1723 202013485 202013233 6.610000e-101 379.0
9 TraesCS1A01G129400 chr1B 90.909 275 17 1 8226 8500 202006271 202006005 6.660000e-96 363.0
10 TraesCS1A01G129400 chr1B 87.313 268 16 6 8740 8999 202005954 202005697 3.190000e-74 291.0
11 TraesCS1A01G129400 chr1B 86.096 187 13 4 8772 8951 180834854 180835034 1.200000e-43 189.0
12 TraesCS1A01G129400 chr1B 93.684 95 6 0 1391 1485 202014738 202014644 9.440000e-30 143.0
13 TraesCS1A01G129400 chr1B 89.888 89 9 0 4747 4835 687798608 687798696 2.060000e-21 115.0
14 TraesCS1A01G129400 chr1B 82.677 127 12 4 8772 8897 40819372 40819489 4.460000e-18 104.0
15 TraesCS1A01G129400 chr1B 97.619 42 1 0 8612 8653 202005992 202005951 1.260000e-08 73.1
16 TraesCS1A01G129400 chr1D 95.474 3005 82 21 4834 7823 133566575 133569540 0.000000e+00 4747.0
17 TraesCS1A01G129400 chr1D 97.701 2392 44 7 2082 4465 133564040 133566428 0.000000e+00 4102.0
18 TraesCS1A01G129400 chr1D 97.515 1328 30 3 1 1327 340512214 340510889 0.000000e+00 2266.0
19 TraesCS1A01G129400 chr1D 97.364 1328 31 4 1 1327 391882553 391881229 0.000000e+00 2255.0
20 TraesCS1A01G129400 chr1D 93.470 781 39 3 7825 8603 133569578 133570348 0.000000e+00 1149.0
21 TraesCS1A01G129400 chr1D 95.467 353 13 3 1391 1741 133563150 133563501 2.200000e-155 560.0
22 TraesCS1A01G129400 chr1D 82.171 387 34 11 8645 9021 133570351 133570712 5.290000e-77 300.0
23 TraesCS1A01G129400 chr1D 96.528 144 5 0 4609 4752 133566433 133566576 1.170000e-58 239.0
24 TraesCS1A01G129400 chr7A 98.342 1327 19 3 1 1327 493108757 493107434 0.000000e+00 2326.0
25 TraesCS1A01G129400 chr5D 97.289 1328 33 3 1 1327 383174119 383175444 0.000000e+00 2250.0
26 TraesCS1A01G129400 chr5D 86.538 104 7 2 8855 8952 514559875 514559773 3.440000e-19 108.0
27 TraesCS1A01G129400 chr3D 97.214 1328 34 3 1 1327 562551861 562550536 0.000000e+00 2244.0
28 TraesCS1A01G129400 chr3D 90.805 87 6 1 4751 4835 283945831 283945917 2.060000e-21 115.0
29 TraesCS1A01G129400 chr7B 95.934 1328 51 3 1 1327 114361360 114360035 0.000000e+00 2150.0
30 TraesCS1A01G129400 chr7D 95.571 1332 53 3 1 1327 304397188 304395858 0.000000e+00 2128.0
31 TraesCS1A01G129400 chr7D 90.909 77 7 0 4024 4100 5041244 5041168 4.460000e-18 104.0
32 TraesCS1A01G129400 chr7D 91.781 73 6 0 5056 5128 2788906 2788978 1.600000e-17 102.0
33 TraesCS1A01G129400 chr2A 85.263 190 14 4 8772 8953 676466293 676466476 5.560000e-42 183.0
34 TraesCS1A01G129400 chr2A 94.118 85 5 0 4751 4835 688667357 688667273 7.350000e-26 130.0
35 TraesCS1A01G129400 chr6B 82.738 168 15 6 8804 8963 100556684 100556523 4.390000e-28 137.0
36 TraesCS1A01G129400 chr2D 95.294 85 4 0 4751 4835 188966909 188966993 1.580000e-27 135.0
37 TraesCS1A01G129400 chr3B 94.118 85 5 0 4751 4835 179011440 179011524 7.350000e-26 130.0
38 TraesCS1A01G129400 chr3B 89.412 85 4 2 4021 4100 394954549 394954633 1.600000e-17 102.0
39 TraesCS1A01G129400 chr3B 91.667 72 6 0 5056 5127 216396411 216396340 5.760000e-17 100.0
40 TraesCS1A01G129400 chrUn 88.764 89 10 0 4747 4835 9573197 9573285 9.580000e-20 110.0
41 TraesCS1A01G129400 chrUn 87.778 90 4 4 4016 4100 382894043 382894130 2.070000e-16 99.0
42 TraesCS1A01G129400 chr3A 89.412 85 8 1 4751 4835 36744965 36744882 1.240000e-18 106.0
43 TraesCS1A01G129400 chr6D 88.636 88 6 2 4021 4108 305173998 305174081 4.460000e-18 104.0
44 TraesCS1A01G129400 chr6D 91.781 73 6 0 5056 5128 15675429 15675357 1.600000e-17 102.0
45 TraesCS1A01G129400 chr6D 82.000 100 12 6 4739 4835 174620817 174620721 7.510000e-11 80.5
46 TraesCS1A01G129400 chr5A 87.640 89 7 2 4017 4101 652000512 652000424 5.760000e-17 100.0
47 TraesCS1A01G129400 chr4D 88.095 84 8 1 4021 4104 211051516 211051597 2.070000e-16 99.0
48 TraesCS1A01G129400 chr4A 87.778 90 4 4 4016 4100 737016592 737016679 2.070000e-16 99.0
49 TraesCS1A01G129400 chr5B 85.870 92 7 1 8855 8940 646675881 646675790 9.650000e-15 93.5
50 TraesCS1A01G129400 chr2B 84.706 85 13 0 4751 4835 53523447 53523363 1.610000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G129400 chr1A 165171837 165180858 9021 True 8017.0000 12818 100.000000 1 9022 2 chr1A.!!$R3 9021
1 TraesCS1A01G129400 chr1A 165199873 165201196 1323 True 2298.0000 2298 97.965000 1 1327 1 chr1A.!!$R2 1326
2 TraesCS1A01G129400 chr1A 70345392 70346716 1324 True 2222.0000 2222 96.910000 1 1327 1 chr1A.!!$R1 1326
3 TraesCS1A01G129400 chr1B 202005697 202014738 9041 True 1400.3875 4878 93.927125 1391 8999 8 chr1B.!!$R1 7608
4 TraesCS1A01G129400 chr1D 340510889 340512214 1325 True 2266.0000 2266 97.515000 1 1327 1 chr1D.!!$R1 1326
5 TraesCS1A01G129400 chr1D 391881229 391882553 1324 True 2255.0000 2255 97.364000 1 1327 1 chr1D.!!$R2 1326
6 TraesCS1A01G129400 chr1D 133563150 133570712 7562 False 1849.5000 4747 93.468500 1391 9021 6 chr1D.!!$F1 7630
7 TraesCS1A01G129400 chr7A 493107434 493108757 1323 True 2326.0000 2326 98.342000 1 1327 1 chr7A.!!$R1 1326
8 TraesCS1A01G129400 chr5D 383174119 383175444 1325 False 2250.0000 2250 97.289000 1 1327 1 chr5D.!!$F1 1326
9 TraesCS1A01G129400 chr3D 562550536 562551861 1325 True 2244.0000 2244 97.214000 1 1327 1 chr3D.!!$R1 1326
10 TraesCS1A01G129400 chr7B 114360035 114361360 1325 True 2150.0000 2150 95.934000 1 1327 1 chr7B.!!$R1 1326
11 TraesCS1A01G129400 chr7D 304395858 304397188 1330 True 2128.0000 2128 95.571000 1 1327 1 chr7D.!!$R2 1326

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 430 5.131142 ACTCCTAATATGGTGGAAGTCTTGG 59.869 44.000 0.00 0.00 0.0 3.61 F
1344 1351 0.392998 CCCTGCTGGCGTTGATAGTT 60.393 55.000 3.63 0.00 0.0 2.24 F
1374 1381 0.322456 CCTCGTTCTTGGGCCATTGA 60.322 55.000 7.26 6.33 0.0 2.57 F
2299 3909 1.210478 AGGTGAGATGGGGATGTTTCG 59.790 52.381 0.00 0.00 0.0 3.46 F
2480 4090 1.512926 GTGCGCCAATAATCTCCGAT 58.487 50.000 4.18 0.00 0.0 4.18 F
3238 4852 2.162208 GCGGCATGAGATTGTTGAGAAA 59.838 45.455 0.00 0.00 0.0 2.52 F
4470 6092 2.238521 TGCCCATGGTTCTTTCTTGTC 58.761 47.619 11.73 0.00 0.0 3.18 F
4832 6455 0.324943 ACATTGTGGGACGAAGGGAG 59.675 55.000 0.00 0.00 0.0 4.30 F
4833 6456 0.324943 CATTGTGGGACGAAGGGAGT 59.675 55.000 0.00 0.00 0.0 3.85 F
6608 8246 1.201429 AGGTTCTCCCCGCTCATGTT 61.201 55.000 0.00 0.00 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 1362 0.322456 TCAATGGCCCAAGAACGAGG 60.322 55.000 0.00 0.0 0.00 4.63 R
2480 4090 1.367346 TATCCTTGTTGGGGCTGTCA 58.633 50.000 0.00 0.0 36.20 3.58 R
3354 4968 0.030235 GAACAGCAACAACCGTTCCC 59.970 55.000 0.00 0.0 33.27 3.97 R
4115 5735 0.950116 GAATGCTCATGGCTGCTACC 59.050 55.000 0.00 0.0 42.39 3.18 R
4116 5736 0.950116 GGAATGCTCATGGCTGCTAC 59.050 55.000 0.00 0.0 42.39 3.58 R
4813 6436 0.324943 CTCCCTTCGTCCCACAATGT 59.675 55.000 0.00 0.0 0.00 2.71 R
5502 7132 2.613133 GCAAGAAACAAAATTGGCAGCA 59.387 40.909 0.00 0.0 0.00 4.41 R
6608 8246 4.257731 TGAGTAATTTAACTGCCATGCGA 58.742 39.130 0.00 0.0 0.00 5.10 R
7113 8753 1.177256 GGCCATGATTGCTGCTAGGG 61.177 60.000 0.00 0.0 0.00 3.53 R
8719 10510 0.040781 CCGCGGACGACACAAAATTT 60.041 50.000 24.07 0.0 43.93 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
425 430 5.131142 ACTCCTAATATGGTGGAAGTCTTGG 59.869 44.000 0.00 0.00 0.00 3.61
683 688 7.972277 AGTGCATATGCTACAAGAAAAATTCTG 59.028 33.333 27.13 0.00 40.12 3.02
1094 1101 5.175127 AGTATGTGATGTTGTTACGATGCA 58.825 37.500 0.00 0.00 0.00 3.96
1247 1254 7.455641 AAATTGTATTTGTTGACGGGTATGA 57.544 32.000 0.00 0.00 0.00 2.15
1280 1287 1.564348 GGTAAGCTCAAAGGGGATGGA 59.436 52.381 0.00 0.00 0.00 3.41
1316 1323 1.461849 TCCACCCGTACCCAAACCT 60.462 57.895 0.00 0.00 0.00 3.50
1342 1349 4.131376 CCCTGCTGGCGTTGATAG 57.869 61.111 3.63 0.00 0.00 2.08
1343 1350 1.221840 CCCTGCTGGCGTTGATAGT 59.778 57.895 3.63 0.00 0.00 2.12
1344 1351 0.392998 CCCTGCTGGCGTTGATAGTT 60.393 55.000 3.63 0.00 0.00 2.24
1345 1352 1.453155 CCTGCTGGCGTTGATAGTTT 58.547 50.000 0.00 0.00 0.00 2.66
1346 1353 1.398390 CCTGCTGGCGTTGATAGTTTC 59.602 52.381 0.00 0.00 0.00 2.78
1347 1354 2.350522 CTGCTGGCGTTGATAGTTTCT 58.649 47.619 0.00 0.00 0.00 2.52
1348 1355 2.076100 TGCTGGCGTTGATAGTTTCTG 58.924 47.619 0.00 0.00 0.00 3.02
1349 1356 2.076863 GCTGGCGTTGATAGTTTCTGT 58.923 47.619 0.00 0.00 0.00 3.41
1350 1357 3.259064 GCTGGCGTTGATAGTTTCTGTA 58.741 45.455 0.00 0.00 0.00 2.74
1351 1358 3.871594 GCTGGCGTTGATAGTTTCTGTAT 59.128 43.478 0.00 0.00 0.00 2.29
1352 1359 5.047847 GCTGGCGTTGATAGTTTCTGTATA 58.952 41.667 0.00 0.00 0.00 1.47
1353 1360 5.696724 GCTGGCGTTGATAGTTTCTGTATAT 59.303 40.000 0.00 0.00 0.00 0.86
1354 1361 6.128795 GCTGGCGTTGATAGTTTCTGTATATC 60.129 42.308 0.00 0.00 0.00 1.63
1355 1362 6.220930 TGGCGTTGATAGTTTCTGTATATCC 58.779 40.000 0.00 0.00 0.00 2.59
1356 1363 5.638234 GGCGTTGATAGTTTCTGTATATCCC 59.362 44.000 0.00 0.00 0.00 3.85
1357 1364 6.456501 GCGTTGATAGTTTCTGTATATCCCT 58.543 40.000 0.00 0.00 0.00 4.20
1358 1365 6.586844 GCGTTGATAGTTTCTGTATATCCCTC 59.413 42.308 0.00 0.00 0.00 4.30
1359 1366 6.802348 CGTTGATAGTTTCTGTATATCCCTCG 59.198 42.308 0.00 0.00 0.00 4.63
1360 1367 7.521748 CGTTGATAGTTTCTGTATATCCCTCGT 60.522 40.741 0.00 0.00 0.00 4.18
1361 1368 7.834881 TGATAGTTTCTGTATATCCCTCGTT 57.165 36.000 0.00 0.00 0.00 3.85
1362 1369 7.883217 TGATAGTTTCTGTATATCCCTCGTTC 58.117 38.462 0.00 0.00 0.00 3.95
1363 1370 7.724506 TGATAGTTTCTGTATATCCCTCGTTCT 59.275 37.037 0.00 0.00 0.00 3.01
1364 1371 6.793505 AGTTTCTGTATATCCCTCGTTCTT 57.206 37.500 0.00 0.00 0.00 2.52
1365 1372 6.574350 AGTTTCTGTATATCCCTCGTTCTTG 58.426 40.000 0.00 0.00 0.00 3.02
1366 1373 5.531122 TTCTGTATATCCCTCGTTCTTGG 57.469 43.478 0.00 0.00 0.00 3.61
1367 1374 3.895656 TCTGTATATCCCTCGTTCTTGGG 59.104 47.826 0.00 0.00 44.66 4.12
1368 1375 2.367567 TGTATATCCCTCGTTCTTGGGC 59.632 50.000 0.00 0.00 43.04 5.36
1369 1376 0.765510 ATATCCCTCGTTCTTGGGCC 59.234 55.000 0.00 0.00 43.04 5.80
1370 1377 0.619255 TATCCCTCGTTCTTGGGCCA 60.619 55.000 0.00 0.00 43.04 5.36
1371 1378 1.281925 ATCCCTCGTTCTTGGGCCAT 61.282 55.000 7.26 0.00 43.04 4.40
1372 1379 1.000896 CCCTCGTTCTTGGGCCATT 60.001 57.895 7.26 0.00 36.61 3.16
1373 1380 1.315257 CCCTCGTTCTTGGGCCATTG 61.315 60.000 7.26 3.51 36.61 2.82
1374 1381 0.322456 CCTCGTTCTTGGGCCATTGA 60.322 55.000 7.26 6.33 0.00 2.57
1375 1382 1.683011 CCTCGTTCTTGGGCCATTGAT 60.683 52.381 7.26 0.00 0.00 2.57
1376 1383 2.094675 CTCGTTCTTGGGCCATTGATT 58.905 47.619 7.26 0.00 0.00 2.57
1377 1384 3.278574 CTCGTTCTTGGGCCATTGATTA 58.721 45.455 7.26 0.00 0.00 1.75
1378 1385 3.278574 TCGTTCTTGGGCCATTGATTAG 58.721 45.455 7.26 0.00 0.00 1.73
1379 1386 3.016736 CGTTCTTGGGCCATTGATTAGT 58.983 45.455 7.26 0.00 0.00 2.24
1380 1387 3.443681 CGTTCTTGGGCCATTGATTAGTT 59.556 43.478 7.26 0.00 0.00 2.24
1381 1388 4.675146 CGTTCTTGGGCCATTGATTAGTTG 60.675 45.833 7.26 0.00 0.00 3.16
1382 1389 2.760092 TCTTGGGCCATTGATTAGTTGC 59.240 45.455 7.26 0.00 0.00 4.17
1383 1390 2.530460 TGGGCCATTGATTAGTTGCT 57.470 45.000 0.00 0.00 0.00 3.91
1384 1391 2.818921 TGGGCCATTGATTAGTTGCTT 58.181 42.857 0.00 0.00 0.00 3.91
1385 1392 2.760092 TGGGCCATTGATTAGTTGCTTC 59.240 45.455 0.00 0.00 0.00 3.86
1386 1393 2.101415 GGGCCATTGATTAGTTGCTTCC 59.899 50.000 4.39 0.00 0.00 3.46
1387 1394 2.223572 GGCCATTGATTAGTTGCTTCCG 60.224 50.000 0.00 0.00 0.00 4.30
1388 1395 2.796032 GCCATTGATTAGTTGCTTCCGC 60.796 50.000 0.00 0.00 0.00 5.54
1389 1396 2.423185 CCATTGATTAGTTGCTTCCGCA 59.577 45.455 0.00 0.00 46.24 5.69
1456 1463 3.056328 GCCCAAGAACGAGGCACC 61.056 66.667 0.00 0.00 46.34 5.01
1457 1464 2.750350 CCCAAGAACGAGGCACCT 59.250 61.111 0.00 0.00 0.00 4.00
1559 2739 1.608055 CACATGTCAGGGAGCAAACA 58.392 50.000 0.00 0.00 0.00 2.83
1604 2784 2.045926 CAACCCTTCCTCCAGGCG 60.046 66.667 0.00 0.00 31.69 5.52
1663 2843 2.672996 CCACCTTCCCGCCAACAG 60.673 66.667 0.00 0.00 0.00 3.16
1723 2903 2.982744 CTCTCTCACCGCGCACTCA 61.983 63.158 8.75 0.00 0.00 3.41
1737 2917 2.811317 CTCAGACGCCAGAACCGC 60.811 66.667 0.00 0.00 0.00 5.68
2299 3909 1.210478 AGGTGAGATGGGGATGTTTCG 59.790 52.381 0.00 0.00 0.00 3.46
2311 3921 5.128008 TGGGGATGTTTCGTTTTTCTTTTCT 59.872 36.000 0.00 0.00 0.00 2.52
2480 4090 1.512926 GTGCGCCAATAATCTCCGAT 58.487 50.000 4.18 0.00 0.00 4.18
2606 4216 6.994868 TTAATCGTACAAATGTGGCAAAAC 57.005 33.333 0.00 0.00 0.00 2.43
2624 4234 9.566432 TGGCAAAACCTTTATAATTGTTCAAAT 57.434 25.926 0.00 0.00 40.22 2.32
2692 4302 3.181451 TGAATTCAAGGAGCAGTGTCTGT 60.181 43.478 5.45 0.00 33.43 3.41
3052 4666 7.687388 AGCAATGTATCTAATGATGGACTCAT 58.313 34.615 0.00 0.00 46.87 2.90
3053 4667 7.606839 AGCAATGTATCTAATGATGGACTCATG 59.393 37.037 0.00 0.00 44.03 3.07
3054 4668 7.389884 GCAATGTATCTAATGATGGACTCATGT 59.610 37.037 0.00 0.00 44.03 3.21
3055 4669 9.933723 CAATGTATCTAATGATGGACTCATGTA 57.066 33.333 0.00 0.00 44.03 2.29
3136 4750 4.116961 TCCGTCAGGATAGCAAATTTACG 58.883 43.478 0.00 0.00 42.75 3.18
3238 4852 2.162208 GCGGCATGAGATTGTTGAGAAA 59.838 45.455 0.00 0.00 0.00 2.52
3310 4924 4.111916 GTTGTGGTTTGGTTGAGTTCATG 58.888 43.478 0.00 0.00 0.00 3.07
3354 4968 5.067153 TGCCAATTTCAGGGTCATATTTACG 59.933 40.000 0.00 0.00 0.00 3.18
3561 5175 2.801063 CGCACCATTTTCAGCAATAGG 58.199 47.619 0.00 0.00 0.00 2.57
3581 5195 3.139211 AGGCTTTCCTCAGTTTTTCTCCT 59.861 43.478 0.00 0.00 38.72 3.69
3759 5373 7.548097 TCTTCTTATGCCACAAGAACTACTAG 58.452 38.462 0.00 0.00 37.15 2.57
3834 5448 3.069443 TCACTTGCCCATTCCAAGAAAAC 59.931 43.478 8.01 0.00 41.64 2.43
3928 5542 8.999220 TTATTTTTCATTTGAGCATGCATACA 57.001 26.923 21.98 13.87 0.00 2.29
4059 5679 8.442384 CCACAATATAACATTGTTTTTCAAGCC 58.558 33.333 7.45 0.00 39.94 4.35
4115 5735 8.198109 CGGAGGGAGTATTAGATTACATATTGG 58.802 40.741 0.00 0.00 0.00 3.16
4116 5736 8.487028 GGAGGGAGTATTAGATTACATATTGGG 58.513 40.741 0.00 0.00 0.00 4.12
4465 6087 5.859205 ATTCTTATGCCCATGGTTCTTTC 57.141 39.130 11.73 0.00 0.00 2.62
4468 6090 4.706476 TCTTATGCCCATGGTTCTTTCTTG 59.294 41.667 11.73 0.00 0.00 3.02
4469 6091 2.380064 TGCCCATGGTTCTTTCTTGT 57.620 45.000 11.73 0.00 0.00 3.16
4470 6092 2.238521 TGCCCATGGTTCTTTCTTGTC 58.761 47.619 11.73 0.00 0.00 3.18
4490 6113 3.628942 GTCCTGTGATGCTATTCAATGCA 59.371 43.478 0.00 0.00 43.67 3.96
4513 6136 8.159447 TGCAATGATCTCTGGCTATATAAACTT 58.841 33.333 0.00 0.00 0.00 2.66
4541 6164 4.990257 TGCTGCTTCTCAAGATAAATTGC 58.010 39.130 0.00 0.00 0.00 3.56
4558 6181 5.493133 AATTGCCAATGCTTGCATAAATG 57.507 34.783 8.61 3.92 37.33 2.32
4594 6217 4.586421 TGAGATAAGGATGGCTCAGTGTAG 59.414 45.833 0.00 0.00 32.85 2.74
4737 6360 5.587388 ATTTGGCCAATCTATGTCTGTTG 57.413 39.130 21.26 0.00 0.00 3.33
4755 6378 8.995220 TGTCTGTTGTTTGTTGTATATTACTCC 58.005 33.333 0.00 0.00 0.00 3.85
4756 6379 8.448615 GTCTGTTGTTTGTTGTATATTACTCCC 58.551 37.037 0.00 0.00 0.00 4.30
4757 6380 8.380099 TCTGTTGTTTGTTGTATATTACTCCCT 58.620 33.333 0.00 0.00 0.00 4.20
4758 6381 8.556213 TGTTGTTTGTTGTATATTACTCCCTC 57.444 34.615 0.00 0.00 0.00 4.30
4759 6382 8.380099 TGTTGTTTGTTGTATATTACTCCCTCT 58.620 33.333 0.00 0.00 0.00 3.69
4760 6383 8.665685 GTTGTTTGTTGTATATTACTCCCTCTG 58.334 37.037 0.00 0.00 0.00 3.35
4761 6384 7.913789 TGTTTGTTGTATATTACTCCCTCTGT 58.086 34.615 0.00 0.00 0.00 3.41
4762 6385 8.038944 TGTTTGTTGTATATTACTCCCTCTGTC 58.961 37.037 0.00 0.00 0.00 3.51
4763 6386 6.726490 TGTTGTATATTACTCCCTCTGTCC 57.274 41.667 0.00 0.00 0.00 4.02
4764 6387 5.601313 TGTTGTATATTACTCCCTCTGTCCC 59.399 44.000 0.00 0.00 0.00 4.46
4765 6388 5.412617 TGTATATTACTCCCTCTGTCCCA 57.587 43.478 0.00 0.00 0.00 4.37
4766 6389 5.784023 TGTATATTACTCCCTCTGTCCCAA 58.216 41.667 0.00 0.00 0.00 4.12
4767 6390 6.206787 TGTATATTACTCCCTCTGTCCCAAA 58.793 40.000 0.00 0.00 0.00 3.28
4768 6391 6.674861 TGTATATTACTCCCTCTGTCCCAAAA 59.325 38.462 0.00 0.00 0.00 2.44
4769 6392 6.848562 ATATTACTCCCTCTGTCCCAAAAT 57.151 37.500 0.00 0.00 0.00 1.82
4770 6393 7.947782 ATATTACTCCCTCTGTCCCAAAATA 57.052 36.000 0.00 0.00 0.00 1.40
4771 6394 6.848562 ATTACTCCCTCTGTCCCAAAATAT 57.151 37.500 0.00 0.00 0.00 1.28
4772 6395 7.947782 ATTACTCCCTCTGTCCCAAAATATA 57.052 36.000 0.00 0.00 0.00 0.86
4773 6396 7.758820 TTACTCCCTCTGTCCCAAAATATAA 57.241 36.000 0.00 0.00 0.00 0.98
4774 6397 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
4775 6398 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
4776 6399 6.621514 ACTCCCTCTGTCCCAAAATATAAGAT 59.378 38.462 0.00 0.00 0.00 2.40
4777 6400 6.841601 TCCCTCTGTCCCAAAATATAAGATG 58.158 40.000 0.00 0.00 0.00 2.90
4778 6401 6.389869 TCCCTCTGTCCCAAAATATAAGATGT 59.610 38.462 0.00 0.00 0.00 3.06
4779 6402 7.062957 CCCTCTGTCCCAAAATATAAGATGTT 58.937 38.462 0.00 0.00 0.00 2.71
4780 6403 7.561356 CCCTCTGTCCCAAAATATAAGATGTTT 59.439 37.037 0.00 0.00 0.00 2.83
4781 6404 8.971073 CCTCTGTCCCAAAATATAAGATGTTTT 58.029 33.333 0.00 0.00 34.50 2.43
4784 6407 8.770438 TGTCCCAAAATATAAGATGTTTTTGC 57.230 30.769 0.00 0.00 37.60 3.68
4785 6408 8.370940 TGTCCCAAAATATAAGATGTTTTTGCA 58.629 29.630 0.00 0.00 37.60 4.08
4786 6409 9.213799 GTCCCAAAATATAAGATGTTTTTGCAA 57.786 29.630 0.00 0.00 37.60 4.08
4787 6410 9.434420 TCCCAAAATATAAGATGTTTTTGCAAG 57.566 29.630 0.00 0.00 37.60 4.01
4788 6411 8.177013 CCCAAAATATAAGATGTTTTTGCAAGC 58.823 33.333 0.00 0.00 37.60 4.01
4789 6412 8.938906 CCAAAATATAAGATGTTTTTGCAAGCT 58.061 29.630 0.00 0.00 37.60 3.74
4815 6438 8.430801 AAAATAGCTTGCAAAAACATGTTACA 57.569 26.923 12.39 5.52 0.00 2.41
4816 6439 8.606040 AAATAGCTTGCAAAAACATGTTACAT 57.394 26.923 12.39 0.00 0.00 2.29
4817 6440 8.606040 AATAGCTTGCAAAAACATGTTACATT 57.394 26.923 12.39 5.00 0.00 2.71
4818 6441 6.289745 AGCTTGCAAAAACATGTTACATTG 57.710 33.333 12.39 17.05 0.00 2.82
4819 6442 5.816777 AGCTTGCAAAAACATGTTACATTGT 59.183 32.000 22.32 0.00 0.00 2.71
4820 6443 5.902981 GCTTGCAAAAACATGTTACATTGTG 59.097 36.000 22.32 11.61 0.00 3.33
4821 6444 5.980698 TGCAAAAACATGTTACATTGTGG 57.019 34.783 22.32 7.91 0.00 4.17
4822 6445 4.813161 TGCAAAAACATGTTACATTGTGGG 59.187 37.500 22.32 7.47 0.00 4.61
4823 6446 5.053145 GCAAAAACATGTTACATTGTGGGA 58.947 37.500 22.32 0.00 0.00 4.37
4824 6447 5.050431 GCAAAAACATGTTACATTGTGGGAC 60.050 40.000 22.32 9.89 0.00 4.46
4825 6448 4.497473 AAACATGTTACATTGTGGGACG 57.503 40.909 12.39 0.00 0.00 4.79
4826 6449 3.410631 ACATGTTACATTGTGGGACGA 57.589 42.857 0.00 0.00 0.00 4.20
4827 6450 3.745799 ACATGTTACATTGTGGGACGAA 58.254 40.909 0.00 0.00 0.00 3.85
4828 6451 3.751175 ACATGTTACATTGTGGGACGAAG 59.249 43.478 0.00 0.00 0.00 3.79
4829 6452 2.773487 TGTTACATTGTGGGACGAAGG 58.227 47.619 0.00 0.00 0.00 3.46
4830 6453 2.081462 GTTACATTGTGGGACGAAGGG 58.919 52.381 0.00 0.00 0.00 3.95
4831 6454 1.646912 TACATTGTGGGACGAAGGGA 58.353 50.000 0.00 0.00 0.00 4.20
4832 6455 0.324943 ACATTGTGGGACGAAGGGAG 59.675 55.000 0.00 0.00 0.00 4.30
4833 6456 0.324943 CATTGTGGGACGAAGGGAGT 59.675 55.000 0.00 0.00 0.00 3.85
4834 6457 1.553248 CATTGTGGGACGAAGGGAGTA 59.447 52.381 0.00 0.00 0.00 2.59
4863 6486 9.598517 TTTTAAAAGATCATGAATATGGCCAAC 57.401 29.630 10.96 2.24 34.97 3.77
4905 6528 9.113838 TCGTCTAGATTAGAAATTACTAACGGT 57.886 33.333 0.00 0.00 36.40 4.83
4936 6559 8.752187 ACAGATTTGCTTGTCAAAATACCATAT 58.248 29.630 0.00 0.00 46.60 1.78
5040 6664 1.728971 GTCCTGTGACTTGATGCTTCG 59.271 52.381 0.00 0.00 38.53 3.79
5256 6884 2.736670 AAGTCTGCTTTGGTGAAGGT 57.263 45.000 0.00 0.00 35.82 3.50
5257 6885 1.972872 AGTCTGCTTTGGTGAAGGTG 58.027 50.000 0.00 0.00 35.82 4.00
5272 6900 6.321181 TGGTGAAGGTGAAGCCATTATATTTC 59.679 38.462 0.00 0.00 40.61 2.17
5399 7029 7.222417 TGCATTTTAACATGTTTTCTCACTGTG 59.778 33.333 17.78 0.17 0.00 3.66
5500 7130 7.604164 TCTTGCTAGTTCTTATGTCTTTCCTTG 59.396 37.037 0.00 0.00 0.00 3.61
5501 7131 6.769512 TGCTAGTTCTTATGTCTTTCCTTGT 58.230 36.000 0.00 0.00 0.00 3.16
5502 7132 7.224297 TGCTAGTTCTTATGTCTTTCCTTGTT 58.776 34.615 0.00 0.00 0.00 2.83
5611 7242 8.011290 GGATATAAAGGATCAGGTAGGCCTATA 58.989 40.741 17.38 0.21 44.97 1.31
5612 7243 9.608718 GATATAAAGGATCAGGTAGGCCTATAT 57.391 37.037 17.38 7.99 44.97 0.86
5613 7244 9.975464 ATATAAAGGATCAGGTAGGCCTATATT 57.025 33.333 17.38 1.52 44.97 1.28
5614 7245 8.701643 ATAAAGGATCAGGTAGGCCTATATTT 57.298 34.615 17.38 7.85 44.97 1.40
5615 7246 7.408013 AAAGGATCAGGTAGGCCTATATTTT 57.592 36.000 17.38 1.22 44.97 1.82
5924 7555 7.224167 TGAATCATGAGATCTTCGTTGAATCTG 59.776 37.037 0.09 0.00 31.90 2.90
6441 8073 4.469657 AGGATTGGTTGTCTGCAGTTTTA 58.530 39.130 14.67 0.00 0.00 1.52
6453 8085 6.016024 TGTCTGCAGTTTTATTCTTGAAGCAT 60.016 34.615 14.67 0.00 0.00 3.79
6608 8246 1.201429 AGGTTCTCCCCGCTCATGTT 61.201 55.000 0.00 0.00 0.00 2.71
6680 8318 7.039784 TGCTTACTATTTGACCTTTTGAAGCAT 60.040 33.333 0.00 0.00 40.27 3.79
7113 8753 3.317993 TGGCTTGCTTCCTCTTGTTTTAC 59.682 43.478 0.00 0.00 0.00 2.01
7118 8758 4.906618 TGCTTCCTCTTGTTTTACCCTAG 58.093 43.478 0.00 0.00 0.00 3.02
7131 8771 0.466922 ACCCTAGCAGCAATCATGGC 60.467 55.000 0.00 0.00 0.00 4.40
7219 8859 2.224606 CAAACGCCATGAGCCATCTAT 58.775 47.619 0.00 0.00 38.78 1.98
7224 8864 2.733542 CGCCATGAGCCATCTATACTCG 60.734 54.545 0.00 0.00 38.78 4.18
7331 8972 7.710475 AGCACAAAGTGTTTTAAAATGCTATGT 59.290 29.630 17.12 11.43 39.03 2.29
7357 8998 5.676532 TTTGGTAATACCGTGAAACACAG 57.323 39.130 4.83 0.00 42.58 3.66
7449 9090 3.587061 TCCTTAAGTCTCCATGGCTCAAA 59.413 43.478 6.96 0.00 0.00 2.69
7543 9184 7.568199 AGTTATGTGCCTGTGATTTTATACC 57.432 36.000 0.00 0.00 0.00 2.73
7546 9187 5.702065 TGTGCCTGTGATTTTATACCCTA 57.298 39.130 0.00 0.00 0.00 3.53
7570 9211 4.022329 GCCCCCACTTGTAATATATTGTGC 60.022 45.833 8.28 0.00 0.00 4.57
7619 9260 3.409026 AACTTTCACACTCCCAGCTAG 57.591 47.619 0.00 0.00 0.00 3.42
7668 9309 0.409092 TTTGGTGATGCAGGGGATGT 59.591 50.000 0.00 0.00 0.00 3.06
7780 9421 4.985538 AGGAGGAAGTAAAGTGCATCAAA 58.014 39.130 0.00 0.00 0.00 2.69
7799 9440 9.231297 GCATCAAAGCCATTATAGAGGTATAAA 57.769 33.333 0.00 0.00 35.24 1.40
7845 9525 9.203421 CATAATACGTGAAAGGCATATAGTCAA 57.797 33.333 0.00 0.00 0.00 3.18
7846 9526 9.772973 ATAATACGTGAAAGGCATATAGTCAAA 57.227 29.630 0.00 0.00 0.00 2.69
7876 9556 7.851963 CCTTTGCATGTTTACTGAAATTTTGTG 59.148 33.333 0.00 0.00 0.00 3.33
7934 9614 4.946478 AGGCCATCTTGTAGTCATAGAC 57.054 45.455 5.01 0.00 0.00 2.59
8199 9881 5.886609 TGTATCTTCCATCCAAGGTTGAAA 58.113 37.500 0.00 0.00 0.00 2.69
8249 10040 2.995258 GTTGCGTATTCTCCACCGTTTA 59.005 45.455 0.00 0.00 0.00 2.01
8250 10041 3.530265 TGCGTATTCTCCACCGTTTAT 57.470 42.857 0.00 0.00 0.00 1.40
8285 10076 6.102897 ACTGCAACTCTGTAAGACAAGTAT 57.897 37.500 0.00 0.00 38.67 2.12
8322 10113 7.771183 TGTGTTTCTGAATTTCTAAGCTTTGT 58.229 30.769 3.20 0.00 0.00 2.83
8323 10114 8.898761 TGTGTTTCTGAATTTCTAAGCTTTGTA 58.101 29.630 3.20 0.00 0.00 2.41
8335 10126 6.341316 TCTAAGCTTTGTACTCAGCTATTGG 58.659 40.000 16.78 7.40 36.51 3.16
8364 10155 0.530744 TGACGGCCTACAGATGTCAC 59.469 55.000 0.00 0.00 34.85 3.67
8372 10163 3.181503 GCCTACAGATGTCACAATGCAAG 60.182 47.826 0.00 0.00 0.00 4.01
8393 10184 4.199310 AGAATGTGCATATTGCCTTACGT 58.801 39.130 13.93 0.00 44.23 3.57
8451 10242 0.669318 GGCCATCGTTGACTCGTTGA 60.669 55.000 0.00 0.00 33.94 3.18
8452 10243 0.438830 GCCATCGTTGACTCGTTGAC 59.561 55.000 0.00 0.00 33.94 3.18
8453 10244 1.935300 GCCATCGTTGACTCGTTGACT 60.935 52.381 0.00 0.00 33.94 3.41
8454 10245 1.986378 CCATCGTTGACTCGTTGACTC 59.014 52.381 0.00 0.00 33.94 3.36
8455 10246 1.644295 CATCGTTGACTCGTTGACTCG 59.356 52.381 0.00 0.00 33.94 4.18
8456 10247 0.659427 TCGTTGACTCGTTGACTCGT 59.341 50.000 0.00 0.00 0.00 4.18
8457 10248 1.064505 TCGTTGACTCGTTGACTCGTT 59.935 47.619 0.00 0.00 0.00 3.85
8458 10249 1.187271 CGTTGACTCGTTGACTCGTTG 59.813 52.381 0.00 0.00 0.00 4.10
8623 10414 0.718343 GCGATGCAGTGTCACTCTTC 59.282 55.000 1.37 5.60 0.00 2.87
8652 10443 9.012161 CAAATCAATAATTTTCAAACCCCACAT 57.988 29.630 0.00 0.00 35.32 3.21
8670 10461 4.209538 CACATGATTTAGGGCATCTCCAA 58.790 43.478 0.00 0.00 36.21 3.53
8675 10466 0.107703 TTAGGGCATCTCCAACGCTG 60.108 55.000 0.00 0.00 36.21 5.18
8676 10467 1.264749 TAGGGCATCTCCAACGCTGT 61.265 55.000 0.00 0.00 36.21 4.40
8685 10476 2.304761 TCTCCAACGCTGTCCCTTAAAT 59.695 45.455 0.00 0.00 0.00 1.40
8704 10495 4.689612 AATGGACATCACGTAGGCTTAT 57.310 40.909 0.00 0.00 0.00 1.73
8705 10496 3.452755 TGGACATCACGTAGGCTTATG 57.547 47.619 0.00 0.00 0.00 1.90
8706 10497 2.102420 TGGACATCACGTAGGCTTATGG 59.898 50.000 0.00 0.00 0.00 2.74
8707 10498 2.135933 GACATCACGTAGGCTTATGGC 58.864 52.381 0.00 0.00 40.90 4.40
8708 10499 1.139989 CATCACGTAGGCTTATGGCG 58.860 55.000 0.00 0.00 44.18 5.69
8709 10500 0.600255 ATCACGTAGGCTTATGGCGC 60.600 55.000 0.00 0.00 44.18 6.53
8711 10502 1.227263 ACGTAGGCTTATGGCGCTG 60.227 57.895 7.64 0.00 44.18 5.18
8712 10503 1.067416 CGTAGGCTTATGGCGCTGA 59.933 57.895 7.64 0.00 44.18 4.26
8713 10504 1.215655 CGTAGGCTTATGGCGCTGAC 61.216 60.000 7.64 0.00 44.18 3.51
8714 10505 0.105039 GTAGGCTTATGGCGCTGACT 59.895 55.000 7.64 2.88 44.18 3.41
8715 10506 0.830648 TAGGCTTATGGCGCTGACTT 59.169 50.000 7.64 0.00 44.18 3.01
8716 10507 0.830648 AGGCTTATGGCGCTGACTTA 59.169 50.000 7.64 0.00 44.18 2.24
8717 10508 1.417890 AGGCTTATGGCGCTGACTTAT 59.582 47.619 7.64 0.00 44.18 1.73
8718 10509 2.632996 AGGCTTATGGCGCTGACTTATA 59.367 45.455 7.64 0.00 44.18 0.98
8719 10510 3.071023 AGGCTTATGGCGCTGACTTATAA 59.929 43.478 7.64 2.96 44.18 0.98
8720 10511 3.813166 GGCTTATGGCGCTGACTTATAAA 59.187 43.478 7.64 0.00 42.94 1.40
8721 10512 4.274950 GGCTTATGGCGCTGACTTATAAAA 59.725 41.667 7.64 0.00 42.94 1.52
8722 10513 5.048713 GGCTTATGGCGCTGACTTATAAAAT 60.049 40.000 7.64 0.00 42.94 1.82
8723 10514 6.438763 GCTTATGGCGCTGACTTATAAAATT 58.561 36.000 7.64 0.00 0.00 1.82
8724 10515 6.918022 GCTTATGGCGCTGACTTATAAAATTT 59.082 34.615 7.64 0.00 0.00 1.82
8725 10516 7.435192 GCTTATGGCGCTGACTTATAAAATTTT 59.565 33.333 7.64 8.75 0.00 1.82
8726 10517 8.627487 TTATGGCGCTGACTTATAAAATTTTG 57.373 30.769 13.76 0.00 0.00 2.44
8727 10518 6.019779 TGGCGCTGACTTATAAAATTTTGT 57.980 33.333 13.76 9.49 0.00 2.83
8728 10519 5.861251 TGGCGCTGACTTATAAAATTTTGTG 59.139 36.000 13.76 2.23 0.00 3.33
8736 10527 6.081693 ACTTATAAAATTTTGTGTCGTCCGC 58.918 36.000 13.76 0.00 0.00 5.54
8813 10605 5.763444 CTCAAAATGAGCTTGCAGATTTG 57.237 39.130 0.00 0.00 37.72 2.32
8817 10610 5.972107 AAATGAGCTTGCAGATTTGTAGT 57.028 34.783 0.00 0.00 0.00 2.73
8887 10680 2.472695 TGTCCCAAGTGATGTAGCAC 57.527 50.000 0.00 0.00 39.05 4.40
8941 10740 2.052782 AAGCTCCCAGTTTTCAACGT 57.947 45.000 0.00 0.00 36.23 3.99
8942 10741 1.594331 AGCTCCCAGTTTTCAACGTC 58.406 50.000 0.00 0.00 36.23 4.34
9002 10801 4.440127 CAAGGGTGCGGCCAATGC 62.440 66.667 2.24 0.00 39.65 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 240 7.255801 CCACCAATCCAACACACTAAATACTTT 60.256 37.037 0.00 0.00 0.00 2.66
1041 1048 6.734137 ACAACAACACATCATAAACGACATT 58.266 32.000 0.00 0.00 0.00 2.71
1231 1238 3.577667 CGTACTCATACCCGTCAACAAA 58.422 45.455 0.00 0.00 0.00 2.83
1232 1239 2.094597 CCGTACTCATACCCGTCAACAA 60.095 50.000 0.00 0.00 0.00 2.83
1233 1240 1.473677 CCGTACTCATACCCGTCAACA 59.526 52.381 0.00 0.00 0.00 3.33
1247 1254 0.828677 GCTTACCCATCACCCGTACT 59.171 55.000 0.00 0.00 0.00 2.73
1280 1287 3.978672 GTGGAGTTACCCCATACCCTTAT 59.021 47.826 0.00 0.00 35.91 1.73
1327 1334 2.094894 CAGAAACTATCAACGCCAGCAG 59.905 50.000 0.00 0.00 0.00 4.24
1328 1335 2.076100 CAGAAACTATCAACGCCAGCA 58.924 47.619 0.00 0.00 0.00 4.41
1329 1336 2.076863 ACAGAAACTATCAACGCCAGC 58.923 47.619 0.00 0.00 0.00 4.85
1330 1337 6.366332 GGATATACAGAAACTATCAACGCCAG 59.634 42.308 0.00 0.00 0.00 4.85
1331 1338 6.220930 GGATATACAGAAACTATCAACGCCA 58.779 40.000 0.00 0.00 0.00 5.69
1332 1339 5.638234 GGGATATACAGAAACTATCAACGCC 59.362 44.000 0.00 0.00 0.00 5.68
1333 1340 6.456501 AGGGATATACAGAAACTATCAACGC 58.543 40.000 0.00 0.00 0.00 4.84
1334 1341 6.802348 CGAGGGATATACAGAAACTATCAACG 59.198 42.308 0.00 0.00 0.00 4.10
1335 1342 7.659186 ACGAGGGATATACAGAAACTATCAAC 58.341 38.462 0.00 0.00 0.00 3.18
1336 1343 7.834881 ACGAGGGATATACAGAAACTATCAA 57.165 36.000 0.00 0.00 0.00 2.57
1337 1344 7.724506 AGAACGAGGGATATACAGAAACTATCA 59.275 37.037 0.00 0.00 0.00 2.15
1338 1345 8.113173 AGAACGAGGGATATACAGAAACTATC 57.887 38.462 0.00 0.00 0.00 2.08
1339 1346 8.361139 CAAGAACGAGGGATATACAGAAACTAT 58.639 37.037 0.00 0.00 0.00 2.12
1340 1347 7.201884 CCAAGAACGAGGGATATACAGAAACTA 60.202 40.741 0.00 0.00 0.00 2.24
1341 1348 6.407074 CCAAGAACGAGGGATATACAGAAACT 60.407 42.308 0.00 0.00 0.00 2.66
1342 1349 5.753921 CCAAGAACGAGGGATATACAGAAAC 59.246 44.000 0.00 0.00 0.00 2.78
1343 1350 5.914033 CCAAGAACGAGGGATATACAGAAA 58.086 41.667 0.00 0.00 0.00 2.52
1344 1351 5.531122 CCAAGAACGAGGGATATACAGAA 57.469 43.478 0.00 0.00 0.00 3.02
1355 1362 0.322456 TCAATGGCCCAAGAACGAGG 60.322 55.000 0.00 0.00 0.00 4.63
1356 1363 1.755179 ATCAATGGCCCAAGAACGAG 58.245 50.000 0.00 0.00 0.00 4.18
1357 1364 2.214376 AATCAATGGCCCAAGAACGA 57.786 45.000 0.00 0.00 0.00 3.85
1358 1365 3.016736 ACTAATCAATGGCCCAAGAACG 58.983 45.455 0.00 0.00 0.00 3.95
1359 1366 4.747810 CAACTAATCAATGGCCCAAGAAC 58.252 43.478 0.00 0.00 0.00 3.01
1360 1367 3.195396 GCAACTAATCAATGGCCCAAGAA 59.805 43.478 0.00 0.00 0.00 2.52
1361 1368 2.760092 GCAACTAATCAATGGCCCAAGA 59.240 45.455 0.00 0.00 0.00 3.02
1362 1369 2.762327 AGCAACTAATCAATGGCCCAAG 59.238 45.455 0.00 0.00 0.00 3.61
1363 1370 2.818921 AGCAACTAATCAATGGCCCAA 58.181 42.857 0.00 0.00 0.00 4.12
1364 1371 2.530460 AGCAACTAATCAATGGCCCA 57.470 45.000 0.00 0.00 0.00 5.36
1365 1372 2.101415 GGAAGCAACTAATCAATGGCCC 59.899 50.000 0.00 0.00 0.00 5.80
1366 1373 2.223572 CGGAAGCAACTAATCAATGGCC 60.224 50.000 0.00 0.00 0.00 5.36
1367 1374 3.070429 CGGAAGCAACTAATCAATGGC 57.930 47.619 0.00 0.00 0.00 4.40
1387 1394 1.375908 TGGACTCTCCACGCAATGC 60.376 57.895 0.00 0.00 42.67 3.56
1395 1402 2.338620 CGCACGTTGGACTCTCCA 59.661 61.111 0.00 0.00 46.61 3.86
1408 1415 3.747976 GTGGTGAATGGGCCGCAC 61.748 66.667 13.60 13.60 35.49 5.34
1409 1416 3.799286 TTGTGGTGAATGGGCCGCA 62.799 57.895 0.00 0.00 42.73 5.69
1410 1417 2.569354 TTTGTGGTGAATGGGCCGC 61.569 57.895 0.00 0.00 35.93 6.53
1456 1463 3.916392 GAGTCGGTGTGGCGACCAG 62.916 68.421 0.00 0.11 35.50 4.00
1457 1464 3.986006 GAGTCGGTGTGGCGACCA 61.986 66.667 0.00 0.00 35.50 4.02
1514 2694 2.224621 ACACCACTTGAGGAGAACATGG 60.225 50.000 0.00 0.00 0.00 3.66
1559 2739 3.626924 GGACCTGGTCCGTGCACT 61.627 66.667 28.96 0.00 43.14 4.40
1672 2852 0.411848 GTTGGGGATGAAAAGGGGGA 59.588 55.000 0.00 0.00 0.00 4.81
1673 2853 0.617535 GGTTGGGGATGAAAAGGGGG 60.618 60.000 0.00 0.00 0.00 5.40
1678 2858 1.964933 GTTTCGGGTTGGGGATGAAAA 59.035 47.619 0.00 0.00 31.10 2.29
2311 3921 4.463539 TCAATGGGTACTAGTAACTCGCAA 59.536 41.667 17.33 0.00 0.00 4.85
2480 4090 1.367346 TATCCTTGTTGGGGCTGTCA 58.633 50.000 0.00 0.00 36.20 3.58
2624 4234 5.997746 AGTATGCAGCAGTTAAAGACAGAAA 59.002 36.000 0.00 0.00 0.00 2.52
3052 4666 5.364778 ACGCATATTATTGGCTGAAGTACA 58.635 37.500 0.00 0.00 0.00 2.90
3053 4667 5.924475 ACGCATATTATTGGCTGAAGTAC 57.076 39.130 0.00 0.00 0.00 2.73
3054 4668 8.503196 CATTAACGCATATTATTGGCTGAAGTA 58.497 33.333 0.00 0.00 0.00 2.24
3055 4669 6.935741 TTAACGCATATTATTGGCTGAAGT 57.064 33.333 0.00 0.00 0.00 3.01
3136 4750 2.825836 CTGACCCGCTGCCAATCC 60.826 66.667 0.00 0.00 0.00 3.01
3273 4887 7.762159 CCAAACCACAACAAAGTAACAGTAAAT 59.238 33.333 0.00 0.00 0.00 1.40
3310 4924 8.810652 TTGGCAAGACAGAACATTTTAATAAC 57.189 30.769 0.00 0.00 0.00 1.89
3328 4942 5.603170 AATATGACCCTGAAATTGGCAAG 57.397 39.130 5.96 0.00 0.00 4.01
3354 4968 0.030235 GAACAGCAACAACCGTTCCC 59.970 55.000 0.00 0.00 33.27 3.97
3561 5175 4.023622 GTCAGGAGAAAAACTGAGGAAAGC 60.024 45.833 0.00 0.00 43.75 3.51
3581 5195 9.308000 ACCATTTACCAAATTAGATTTCAGTCA 57.692 29.630 0.00 0.00 0.00 3.41
3737 5351 6.631016 CACTAGTAGTTCTTGTGGCATAAGA 58.369 40.000 20.94 20.94 42.88 2.10
3834 5448 5.953183 TGCAAAGATAAGTACTTGCAATGG 58.047 37.500 18.56 5.24 32.89 3.16
4059 5679 7.637519 CACAATATAAGATCGTTTGTCAAGCTG 59.362 37.037 0.00 0.00 0.00 4.24
4067 5687 5.050363 CCGTCCCACAATATAAGATCGTTTG 60.050 44.000 0.00 0.00 0.00 2.93
4071 5691 4.486090 CTCCGTCCCACAATATAAGATCG 58.514 47.826 0.00 0.00 0.00 3.69
4115 5735 0.950116 GAATGCTCATGGCTGCTACC 59.050 55.000 0.00 0.00 42.39 3.18
4116 5736 0.950116 GGAATGCTCATGGCTGCTAC 59.050 55.000 0.00 0.00 42.39 3.58
4438 6060 7.090319 AGAACCATGGGCATAAGAATACATA 57.910 36.000 18.09 0.00 0.00 2.29
4452 6074 2.821969 CAGGACAAGAAAGAACCATGGG 59.178 50.000 18.09 0.00 0.00 4.00
4465 6087 5.732528 GCATTGAATAGCATCACAGGACAAG 60.733 44.000 0.00 0.00 0.00 3.16
4468 6090 3.628942 TGCATTGAATAGCATCACAGGAC 59.371 43.478 0.00 0.00 35.51 3.85
4469 6091 3.888583 TGCATTGAATAGCATCACAGGA 58.111 40.909 0.00 0.00 35.51 3.86
4470 6092 4.642445 TTGCATTGAATAGCATCACAGG 57.358 40.909 0.00 0.00 40.94 4.00
4513 6136 3.751479 TCTTGAGAAGCAGCAGTAACA 57.249 42.857 0.00 0.00 0.00 2.41
4541 6164 8.032451 TCATGATATCATTTATGCAAGCATTGG 58.968 33.333 15.74 0.00 39.72 3.16
4558 6181 7.932491 CCATCCTTATCTCATGGTCATGATATC 59.068 40.741 13.26 0.00 45.74 1.63
4622 6245 1.758936 TGCATGGAAGCATTCTCTGG 58.241 50.000 0.00 0.00 46.56 3.86
4737 6360 7.494952 GGACAGAGGGAGTAATATACAACAAAC 59.505 40.741 0.00 0.00 0.00 2.93
4752 6375 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
4753 6376 6.389869 ACATCTTATATTTTGGGACAGAGGGA 59.610 38.462 0.00 0.00 42.39 4.20
4754 6377 6.605119 ACATCTTATATTTTGGGACAGAGGG 58.395 40.000 0.00 0.00 42.39 4.30
4755 6378 8.525290 AAACATCTTATATTTTGGGACAGAGG 57.475 34.615 0.00 0.00 42.39 3.69
4758 6381 8.872845 GCAAAAACATCTTATATTTTGGGACAG 58.127 33.333 10.66 0.00 42.39 3.51
4759 6382 8.370940 TGCAAAAACATCTTATATTTTGGGACA 58.629 29.630 10.66 0.31 41.02 4.02
4760 6383 8.770438 TGCAAAAACATCTTATATTTTGGGAC 57.230 30.769 10.66 0.00 41.02 4.46
4761 6384 9.434420 CTTGCAAAAACATCTTATATTTTGGGA 57.566 29.630 0.00 0.00 41.02 4.37
4762 6385 8.177013 GCTTGCAAAAACATCTTATATTTTGGG 58.823 33.333 0.00 0.00 41.02 4.12
4763 6386 8.938906 AGCTTGCAAAAACATCTTATATTTTGG 58.061 29.630 0.00 0.00 41.02 3.28
4789 6412 9.534565 TGTAACATGTTTTTGCAAGCTATTTTA 57.465 25.926 17.78 0.00 0.00 1.52
4790 6413 8.430801 TGTAACATGTTTTTGCAAGCTATTTT 57.569 26.923 17.78 0.00 0.00 1.82
4791 6414 8.606040 ATGTAACATGTTTTTGCAAGCTATTT 57.394 26.923 17.78 0.00 0.00 1.40
4792 6415 8.497554 CAATGTAACATGTTTTTGCAAGCTATT 58.502 29.630 17.78 0.46 0.00 1.73
4793 6416 7.656948 ACAATGTAACATGTTTTTGCAAGCTAT 59.343 29.630 17.78 0.00 0.00 2.97
4794 6417 6.983307 ACAATGTAACATGTTTTTGCAAGCTA 59.017 30.769 17.78 0.00 0.00 3.32
4795 6418 5.816777 ACAATGTAACATGTTTTTGCAAGCT 59.183 32.000 17.78 0.67 0.00 3.74
4796 6419 5.902981 CACAATGTAACATGTTTTTGCAAGC 59.097 36.000 17.78 0.00 0.00 4.01
4797 6420 6.420588 CCACAATGTAACATGTTTTTGCAAG 58.579 36.000 17.78 11.15 0.00 4.01
4798 6421 5.295292 CCCACAATGTAACATGTTTTTGCAA 59.705 36.000 17.78 0.00 0.00 4.08
4799 6422 4.813161 CCCACAATGTAACATGTTTTTGCA 59.187 37.500 17.78 11.19 0.00 4.08
4800 6423 5.050431 GTCCCACAATGTAACATGTTTTTGC 60.050 40.000 17.78 5.87 0.00 3.68
4801 6424 5.174761 CGTCCCACAATGTAACATGTTTTTG 59.825 40.000 17.78 18.62 0.00 2.44
4802 6425 5.067936 TCGTCCCACAATGTAACATGTTTTT 59.932 36.000 17.78 5.89 0.00 1.94
4803 6426 4.580995 TCGTCCCACAATGTAACATGTTTT 59.419 37.500 17.78 1.91 0.00 2.43
4804 6427 4.138290 TCGTCCCACAATGTAACATGTTT 58.862 39.130 17.78 0.00 0.00 2.83
4805 6428 3.745799 TCGTCCCACAATGTAACATGTT 58.254 40.909 16.68 16.68 0.00 2.71
4806 6429 3.410631 TCGTCCCACAATGTAACATGT 57.589 42.857 0.00 0.00 0.00 3.21
4807 6430 3.126858 CCTTCGTCCCACAATGTAACATG 59.873 47.826 0.00 0.00 0.00 3.21
4808 6431 3.343617 CCTTCGTCCCACAATGTAACAT 58.656 45.455 0.00 0.00 0.00 2.71
4809 6432 2.551287 CCCTTCGTCCCACAATGTAACA 60.551 50.000 0.00 0.00 0.00 2.41
4810 6433 2.081462 CCCTTCGTCCCACAATGTAAC 58.919 52.381 0.00 0.00 0.00 2.50
4811 6434 1.979308 TCCCTTCGTCCCACAATGTAA 59.021 47.619 0.00 0.00 0.00 2.41
4812 6435 1.553248 CTCCCTTCGTCCCACAATGTA 59.447 52.381 0.00 0.00 0.00 2.29
4813 6436 0.324943 CTCCCTTCGTCCCACAATGT 59.675 55.000 0.00 0.00 0.00 2.71
4814 6437 0.324943 ACTCCCTTCGTCCCACAATG 59.675 55.000 0.00 0.00 0.00 2.82
4815 6438 1.946984 TACTCCCTTCGTCCCACAAT 58.053 50.000 0.00 0.00 0.00 2.71
4816 6439 1.829222 GATACTCCCTTCGTCCCACAA 59.171 52.381 0.00 0.00 0.00 3.33
4817 6440 1.006758 AGATACTCCCTTCGTCCCACA 59.993 52.381 0.00 0.00 0.00 4.17
4818 6441 1.777941 AGATACTCCCTTCGTCCCAC 58.222 55.000 0.00 0.00 0.00 4.61
4819 6442 2.544844 AAGATACTCCCTTCGTCCCA 57.455 50.000 0.00 0.00 0.00 4.37
4820 6443 3.908643 AAAAGATACTCCCTTCGTCCC 57.091 47.619 0.00 0.00 0.00 4.46
4821 6444 7.101700 TCTTTTAAAAGATACTCCCTTCGTCC 58.898 38.462 23.65 0.00 39.95 4.79
4847 6470 9.639563 TTTCTATAAAGTTGGCCATATTCATGA 57.360 29.630 6.09 0.00 33.67 3.07
4850 6473 9.420118 ACATTTCTATAAAGTTGGCCATATTCA 57.580 29.630 6.09 0.00 0.00 2.57
4891 6514 5.232463 TCTGTGTGGACCGTTAGTAATTTC 58.768 41.667 0.00 0.00 0.00 2.17
4902 6525 1.069022 CAAGCAAATCTGTGTGGACCG 60.069 52.381 0.00 0.00 0.00 4.79
4905 6528 2.929641 TGACAAGCAAATCTGTGTGGA 58.070 42.857 0.00 0.00 0.00 4.02
4936 6559 5.630121 ACCAACAGAAATCATGACACCTTA 58.370 37.500 0.00 0.00 0.00 2.69
5008 6631 6.979817 TCAAGTCACAGGACAAATTTGAATTG 59.020 34.615 24.64 18.46 46.80 2.32
5040 6664 8.086851 ACACATTTTAAATTTCATTGACTGGC 57.913 30.769 0.00 0.00 0.00 4.85
5252 6880 8.716674 ATGATGAAATATAATGGCTTCACCTT 57.283 30.769 0.00 0.00 40.22 3.50
5253 6881 8.716674 AATGATGAAATATAATGGCTTCACCT 57.283 30.769 0.00 0.00 40.22 4.00
5254 6882 9.199982 CAAATGATGAAATATAATGGCTTCACC 57.800 33.333 0.00 0.00 39.84 4.02
5255 6883 8.706035 GCAAATGATGAAATATAATGGCTTCAC 58.294 33.333 0.00 0.00 31.00 3.18
5256 6884 8.644216 AGCAAATGATGAAATATAATGGCTTCA 58.356 29.630 0.00 0.00 32.67 3.02
5257 6885 9.485206 AAGCAAATGATGAAATATAATGGCTTC 57.515 29.630 0.00 0.00 30.34 3.86
5272 6900 6.038382 AGCAGACTTCTATCAAGCAAATGATG 59.962 38.462 9.21 1.96 40.21 3.07
5399 7029 3.141398 TGTCCAACTCAGTTCAGCATTC 58.859 45.455 0.00 0.00 0.00 2.67
5500 7130 4.590226 CAAGAAACAAAATTGGCAGCAAC 58.410 39.130 0.00 0.00 0.00 4.17
5501 7131 3.065095 GCAAGAAACAAAATTGGCAGCAA 59.935 39.130 0.00 0.00 0.00 3.91
5502 7132 2.613133 GCAAGAAACAAAATTGGCAGCA 59.387 40.909 0.00 0.00 0.00 4.41
5878 7509 5.529581 TCAAACAGAAAGGGATTTGAACC 57.470 39.130 0.00 0.00 37.94 3.62
6441 8073 7.414222 ACATAAATGGTGATGCTTCAAGAAT 57.586 32.000 3.51 0.00 32.48 2.40
6498 8130 9.838339 AAATACAGGGAGATTGTAAGTTGATAG 57.162 33.333 0.00 0.00 34.92 2.08
6515 8153 6.096705 TCAATCAATGCAAGGTAAATACAGGG 59.903 38.462 0.00 0.00 0.00 4.45
6608 8246 4.257731 TGAGTAATTTAACTGCCATGCGA 58.742 39.130 0.00 0.00 0.00 5.10
7113 8753 1.177256 GGCCATGATTGCTGCTAGGG 61.177 60.000 0.00 0.00 0.00 3.53
7118 8758 2.012902 GAGGTGGCCATGATTGCTGC 62.013 60.000 9.72 0.00 0.00 5.25
7131 8771 2.879103 AGTTGGTAATGGTGAGGTGG 57.121 50.000 0.00 0.00 0.00 4.61
7219 8859 5.243981 AGCTAGAGTGTAAGTGAACGAGTA 58.756 41.667 0.00 0.00 0.00 2.59
7224 8864 6.256912 ACTGTAGCTAGAGTGTAAGTGAAC 57.743 41.667 21.83 0.00 0.00 3.18
7331 8972 8.162878 TGTGTTTCACGGTATTACCAAATAAA 57.837 30.769 13.22 4.99 38.47 1.40
7449 9090 4.952335 CAGTTCCAAGCATCCCTAAAAGAT 59.048 41.667 0.00 0.00 0.00 2.40
7543 9184 6.180472 CAATATATTACAAGTGGGGGCTAGG 58.820 44.000 0.00 0.00 0.00 3.02
7546 9187 5.385198 CACAATATATTACAAGTGGGGGCT 58.615 41.667 0.00 0.00 0.00 5.19
7570 9211 8.629986 CAGTTGTTACAAAATTCTTAAGCATCG 58.370 33.333 0.00 0.00 0.00 3.84
7619 9260 2.827921 ACATCAGTTTCAATTCCTGGGC 59.172 45.455 0.00 0.00 0.00 5.36
7668 9309 0.540133 TTGCTTCATGCCAGCCAGAA 60.540 50.000 12.65 0.62 42.00 3.02
7732 9373 6.833933 TCACCTCTTCTGTAGAACTATATGCA 59.166 38.462 0.00 0.00 30.91 3.96
7819 9460 8.757164 TGACTATATGCCTTTCACGTATTATG 57.243 34.615 0.00 0.00 0.00 1.90
7827 9507 6.599638 AGGACTTTTGACTATATGCCTTTCAC 59.400 38.462 0.00 0.00 0.00 3.18
7845 9525 6.463995 TTCAGTAAACATGCAAAGGACTTT 57.536 33.333 0.00 0.00 0.00 2.66
7846 9526 6.463995 TTTCAGTAAACATGCAAAGGACTT 57.536 33.333 0.00 0.00 0.00 3.01
7876 9556 3.518003 GCAGATGCACACCCATCC 58.482 61.111 0.00 0.00 41.98 3.51
7934 9614 3.793144 GCTGCCGCTGTTCCTTCG 61.793 66.667 0.00 0.00 0.00 3.79
7964 9644 3.720601 TGCTCCGATGCCCTTGCT 61.721 61.111 0.00 0.00 38.71 3.91
8186 9868 6.933514 AATTACCACATTTCAACCTTGGAT 57.066 33.333 0.00 0.00 0.00 3.41
8199 9881 5.483583 ACTGGTGGCAAATTAATTACCACAT 59.516 36.000 33.10 23.22 43.51 3.21
8238 10029 6.988622 TTACATAACCAATAAACGGTGGAG 57.011 37.500 0.00 0.00 38.36 3.86
8249 10040 6.490040 ACAGAGTTGCAGTTTACATAACCAAT 59.510 34.615 0.00 0.00 0.00 3.16
8250 10041 5.825679 ACAGAGTTGCAGTTTACATAACCAA 59.174 36.000 0.00 0.00 0.00 3.67
8301 10092 9.337396 TGAGTACAAAGCTTAGAAATTCAGAAA 57.663 29.630 0.00 0.00 0.00 2.52
8322 10113 4.760530 ATGAGCAACCAATAGCTGAGTA 57.239 40.909 0.00 0.00 42.04 2.59
8323 10114 3.641434 ATGAGCAACCAATAGCTGAGT 57.359 42.857 0.00 0.00 42.04 3.41
8335 10126 2.135933 GTAGGCCGTCATATGAGCAAC 58.864 52.381 16.27 10.85 0.00 4.17
8428 10219 1.796796 GAGTCAACGATGGCCTTGC 59.203 57.895 3.32 0.00 0.00 4.01
8451 10242 1.337447 CCACCCGAATGTACAACGAGT 60.337 52.381 21.48 14.56 0.00 4.18
8452 10243 1.337447 ACCACCCGAATGTACAACGAG 60.337 52.381 21.48 14.03 0.00 4.18
8453 10244 0.680618 ACCACCCGAATGTACAACGA 59.319 50.000 21.48 0.00 0.00 3.85
8454 10245 0.793861 CACCACCCGAATGTACAACG 59.206 55.000 15.57 15.57 0.00 4.10
8455 10246 1.161843 CCACCACCCGAATGTACAAC 58.838 55.000 0.00 0.00 0.00 3.32
8456 10247 0.606944 GCCACCACCCGAATGTACAA 60.607 55.000 0.00 0.00 0.00 2.41
8457 10248 1.003112 GCCACCACCCGAATGTACA 60.003 57.895 0.00 0.00 0.00 2.90
8458 10249 1.003112 TGCCACCACCCGAATGTAC 60.003 57.895 0.00 0.00 0.00 2.90
8542 10333 8.157476 ACTCTTTTGGTTTAGTCACACTATCAT 58.843 33.333 0.00 0.00 29.64 2.45
8543 10334 7.506114 ACTCTTTTGGTTTAGTCACACTATCA 58.494 34.615 0.00 0.00 29.64 2.15
8548 10339 5.578776 CCAACTCTTTTGGTTTAGTCACAC 58.421 41.667 0.00 0.00 34.92 3.82
8590 10381 0.248498 CATCGCTGCTTCATGCCAAG 60.248 55.000 0.00 0.00 42.00 3.61
8603 10394 0.319728 AAGAGTGACACTGCATCGCT 59.680 50.000 14.14 1.55 39.62 4.93
8605 10396 2.257894 GAGAAGAGTGACACTGCATCG 58.742 52.381 14.14 0.00 0.00 3.84
8606 10397 2.028658 TGGAGAAGAGTGACACTGCATC 60.029 50.000 14.14 8.17 0.00 3.91
8607 10398 1.973515 TGGAGAAGAGTGACACTGCAT 59.026 47.619 14.14 0.00 0.00 3.96
8608 10399 1.413118 TGGAGAAGAGTGACACTGCA 58.587 50.000 14.14 0.00 0.00 4.41
8609 10400 2.533266 TTGGAGAAGAGTGACACTGC 57.467 50.000 14.14 4.93 0.00 4.40
8610 10401 4.635223 TGATTTGGAGAAGAGTGACACTG 58.365 43.478 14.14 0.00 0.00 3.66
8623 10414 7.882271 TGGGGTTTGAAAATTATTGATTTGGAG 59.118 33.333 0.00 0.00 37.98 3.86
8652 10443 2.917933 CGTTGGAGATGCCCTAAATCA 58.082 47.619 0.00 0.00 34.97 2.57
8676 10467 3.992943 ACGTGATGTCCATTTAAGGGA 57.007 42.857 0.00 0.00 0.00 4.20
8685 10476 2.102420 CCATAAGCCTACGTGATGTCCA 59.898 50.000 0.00 0.00 0.00 4.02
8704 10495 5.861251 CACAAAATTTTATAAGTCAGCGCCA 59.139 36.000 2.29 0.00 0.00 5.69
8705 10496 5.861787 ACACAAAATTTTATAAGTCAGCGCC 59.138 36.000 2.29 0.00 0.00 6.53
8706 10497 6.236941 CGACACAAAATTTTATAAGTCAGCGC 60.237 38.462 0.00 0.00 0.00 5.92
8707 10498 6.795114 ACGACACAAAATTTTATAAGTCAGCG 59.205 34.615 2.44 3.89 0.00 5.18
8708 10499 7.270579 GGACGACACAAAATTTTATAAGTCAGC 59.729 37.037 18.54 11.97 0.00 4.26
8709 10500 7.477422 CGGACGACACAAAATTTTATAAGTCAG 59.523 37.037 18.54 14.12 0.00 3.51
8711 10502 6.247791 GCGGACGACACAAAATTTTATAAGTC 59.752 38.462 2.44 9.44 0.00 3.01
8712 10503 6.081693 GCGGACGACACAAAATTTTATAAGT 58.918 36.000 2.44 0.99 0.00 2.24
8713 10504 5.224313 CGCGGACGACACAAAATTTTATAAG 59.776 40.000 2.44 0.00 43.93 1.73
8714 10505 5.080731 CGCGGACGACACAAAATTTTATAA 58.919 37.500 2.44 0.00 43.93 0.98
8715 10506 4.435784 CCGCGGACGACACAAAATTTTATA 60.436 41.667 24.07 0.00 43.93 0.98
8716 10507 3.484683 CGCGGACGACACAAAATTTTAT 58.515 40.909 2.44 0.00 43.93 1.40
8717 10508 2.349627 CCGCGGACGACACAAAATTTTA 60.350 45.455 24.07 0.00 43.93 1.52
8718 10509 1.598430 CCGCGGACGACACAAAATTTT 60.598 47.619 24.07 0.00 43.93 1.82
8719 10510 0.040781 CCGCGGACGACACAAAATTT 60.041 50.000 24.07 0.00 43.93 1.82
8720 10511 0.881159 TCCGCGGACGACACAAAATT 60.881 50.000 27.28 0.00 43.93 1.82
8721 10512 1.301087 TCCGCGGACGACACAAAAT 60.301 52.632 27.28 0.00 43.93 1.82
8722 10513 2.106534 TCCGCGGACGACACAAAA 59.893 55.556 27.28 0.00 43.93 2.44
8723 10514 2.659244 GTCCGCGGACGACACAAA 60.659 61.111 39.77 8.07 43.93 2.83
8802 10594 8.296799 TGCAAATTTAACTACAAATCTGCAAG 57.703 30.769 7.01 0.00 44.62 4.01
8813 10605 6.015772 TGTTCCCTCCTTGCAAATTTAACTAC 60.016 38.462 0.00 0.00 0.00 2.73
8817 10610 5.779771 AGATGTTCCCTCCTTGCAAATTTAA 59.220 36.000 0.00 0.00 0.00 1.52
8887 10680 7.432869 AGAATACAATCTGCAGCTAGTAGAAG 58.567 38.462 9.47 6.73 42.43 2.85
8954 10753 2.562738 GCCCATGGCTGACTTAGTTTTT 59.437 45.455 6.09 0.00 46.69 1.94
8955 10754 2.171003 GCCCATGGCTGACTTAGTTTT 58.829 47.619 6.09 0.00 46.69 2.43
8956 10755 1.839424 GCCCATGGCTGACTTAGTTT 58.161 50.000 6.09 0.00 46.69 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.