Multiple sequence alignment - TraesCS1A01G128800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G128800 chr1A 100.000 3000 0 0 1 3000 158494987 158491988 0.000000e+00 5541.0
1 TraesCS1A01G128800 chr1A 92.732 399 26 2 7 405 553516069 553515674 9.330000e-160 573.0
2 TraesCS1A01G128800 chr1D 95.540 2063 76 8 605 2661 131413258 131411206 0.000000e+00 3286.0
3 TraesCS1A01G128800 chr1D 94.706 340 12 4 2663 2997 131411178 131410840 9.530000e-145 523.0
4 TraesCS1A01G128800 chr1D 97.170 106 3 0 481 586 131414304 131414199 2.380000e-41 180.0
5 TraesCS1A01G128800 chr1B 92.252 2336 107 21 696 2997 207170496 207168201 0.000000e+00 3243.0
6 TraesCS1A01G128800 chr1B 96.774 31 1 0 410 440 275820707 275820677 5.000000e-03 52.8
7 TraesCS1A01G128800 chr7A 93.017 401 23 4 1 401 721949368 721948973 5.570000e-162 580.0
8 TraesCS1A01G128800 chr7A 92.804 403 24 3 9 406 94393193 94393595 2.010000e-161 579.0
9 TraesCS1A01G128800 chr7A 92.537 402 27 2 7 405 251802007 251801606 9.330000e-160 573.0
10 TraesCS1A01G128800 chr5A 92.750 400 24 3 7 406 457429052 457429446 9.330000e-160 573.0
11 TraesCS1A01G128800 chr5A 91.429 420 27 5 1 411 658495188 658494769 4.340000e-158 568.0
12 TraesCS1A01G128800 chr5A 92.020 401 30 1 1 399 130260374 130260774 2.020000e-156 562.0
13 TraesCS1A01G128800 chr2A 92.500 400 27 2 7 406 668917670 668918066 1.210000e-158 569.0
14 TraesCS1A01G128800 chr4A 91.646 407 32 1 1 405 6470794 6470388 2.020000e-156 562.0
15 TraesCS1A01G128800 chr4A 92.857 98 7 0 1361 1458 685309222 685309125 3.120000e-30 143.0
16 TraesCS1A01G128800 chr4A 91.837 98 8 0 1361 1458 685302019 685301922 1.450000e-28 137.0
17 TraesCS1A01G128800 chr4D 92.857 98 7 0 1361 1458 478674011 478673914 3.120000e-30 143.0
18 TraesCS1A01G128800 chr4B 92.857 98 7 0 1361 1458 605279454 605279357 3.120000e-30 143.0
19 TraesCS1A01G128800 chr6B 95.082 61 2 1 1036 1096 640312693 640312634 8.850000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G128800 chr1A 158491988 158494987 2999 True 5541.000000 5541 100.000000 1 3000 1 chr1A.!!$R1 2999
1 TraesCS1A01G128800 chr1D 131410840 131414304 3464 True 1329.666667 3286 95.805333 481 2997 3 chr1D.!!$R1 2516
2 TraesCS1A01G128800 chr1B 207168201 207170496 2295 True 3243.000000 3243 92.252000 696 2997 1 chr1B.!!$R1 2301

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.249120 TCATGCTCGTACAAGTGGGG 59.751 55.0 0.00 0.0 0.00 4.96 F
1619 2556 0.099968 CGCTAGCGTACTACCAGCAA 59.900 55.0 28.66 0.0 34.35 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 2799 0.179043 TGGTTAACCGCAGTTGCAGA 60.179 50.0 19.65 0.00 42.21 4.26 R
2655 3596 0.829333 AAAATTGCCATGGCGCCATA 59.171 45.0 39.94 25.96 45.51 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.669569 GAACAGCCAGCAGCCGAA 60.670 61.111 0.00 0.00 45.47 4.30
30 31 2.670934 AACAGCCAGCAGCCGAAG 60.671 61.111 0.00 0.00 45.47 3.79
48 49 3.737172 GGCTGCACCGTTCGCATT 61.737 61.111 0.50 0.00 39.02 3.56
49 50 2.202349 GCTGCACCGTTCGCATTC 60.202 61.111 0.00 0.00 39.02 2.67
50 51 2.096406 CTGCACCGTTCGCATTCG 59.904 61.111 0.00 0.00 39.02 3.34
51 52 2.356433 TGCACCGTTCGCATTCGA 60.356 55.556 0.00 0.00 43.89 3.71
62 63 3.740044 TCGCATTCGAACTCCATTTTC 57.260 42.857 0.00 0.00 42.44 2.29
63 64 2.093625 TCGCATTCGAACTCCATTTTCG 59.906 45.455 0.00 0.00 45.81 3.46
64 65 2.177173 GCATTCGAACTCCATTTTCGC 58.823 47.619 0.00 0.00 44.43 4.70
65 66 2.414029 GCATTCGAACTCCATTTTCGCA 60.414 45.455 0.00 0.00 44.43 5.10
66 67 3.820689 CATTCGAACTCCATTTTCGCAA 58.179 40.909 0.00 0.00 44.43 4.85
67 68 3.972950 TTCGAACTCCATTTTCGCAAA 57.027 38.095 0.00 0.00 44.43 3.68
68 69 3.972950 TCGAACTCCATTTTCGCAAAA 57.027 38.095 0.00 0.00 44.43 2.44
69 70 4.294416 TCGAACTCCATTTTCGCAAAAA 57.706 36.364 0.00 0.00 44.43 1.94
70 71 4.865776 TCGAACTCCATTTTCGCAAAAAT 58.134 34.783 0.00 0.00 44.12 1.82
71 72 4.915085 TCGAACTCCATTTTCGCAAAAATC 59.085 37.500 0.00 0.00 41.96 2.17
72 73 4.917415 CGAACTCCATTTTCGCAAAAATCT 59.083 37.500 0.00 0.00 41.96 2.40
73 74 5.402270 CGAACTCCATTTTCGCAAAAATCTT 59.598 36.000 0.00 0.00 41.96 2.40
74 75 6.074356 CGAACTCCATTTTCGCAAAAATCTTT 60.074 34.615 0.00 0.00 41.96 2.52
75 76 7.516627 CGAACTCCATTTTCGCAAAAATCTTTT 60.517 33.333 0.00 0.00 41.96 2.27
76 77 7.177498 ACTCCATTTTCGCAAAAATCTTTTC 57.823 32.000 0.00 0.00 41.96 2.29
77 78 6.760770 ACTCCATTTTCGCAAAAATCTTTTCA 59.239 30.769 0.00 0.00 41.96 2.69
78 79 7.042523 ACTCCATTTTCGCAAAAATCTTTTCAG 60.043 33.333 0.00 0.00 41.96 3.02
79 80 5.847515 CCATTTTCGCAAAAATCTTTTCAGC 59.152 36.000 0.00 3.89 41.96 4.26
80 81 6.293027 CCATTTTCGCAAAAATCTTTTCAGCT 60.293 34.615 0.00 0.00 41.96 4.24
81 82 6.660887 TTTTCGCAAAAATCTTTTCAGCTT 57.339 29.167 9.58 0.00 32.40 3.74
82 83 5.888412 TTCGCAAAAATCTTTTCAGCTTC 57.112 34.783 9.58 0.00 32.40 3.86
83 84 5.186996 TCGCAAAAATCTTTTCAGCTTCT 57.813 34.783 9.58 0.00 32.40 2.85
84 85 4.977963 TCGCAAAAATCTTTTCAGCTTCTG 59.022 37.500 9.58 0.00 32.40 3.02
85 86 4.741676 CGCAAAAATCTTTTCAGCTTCTGT 59.258 37.500 9.58 0.00 32.40 3.41
86 87 5.332055 CGCAAAAATCTTTTCAGCTTCTGTG 60.332 40.000 9.58 0.00 32.40 3.66
87 88 5.521372 GCAAAAATCTTTTCAGCTTCTGTGT 59.479 36.000 0.00 0.00 32.08 3.72
88 89 6.509039 GCAAAAATCTTTTCAGCTTCTGTGTG 60.509 38.462 0.00 0.00 32.08 3.82
89 90 6.455360 AAAATCTTTTCAGCTTCTGTGTGA 57.545 33.333 0.00 0.00 32.61 3.58
90 91 5.429957 AATCTTTTCAGCTTCTGTGTGAC 57.570 39.130 0.00 0.00 32.61 3.67
91 92 3.206150 TCTTTTCAGCTTCTGTGTGACC 58.794 45.455 0.00 0.00 32.61 4.02
92 93 3.118261 TCTTTTCAGCTTCTGTGTGACCT 60.118 43.478 0.00 0.00 32.61 3.85
93 94 3.281727 TTTCAGCTTCTGTGTGACCTT 57.718 42.857 0.00 0.00 32.61 3.50
94 95 3.281727 TTCAGCTTCTGTGTGACCTTT 57.718 42.857 0.00 0.00 32.61 3.11
95 96 2.838736 TCAGCTTCTGTGTGACCTTTC 58.161 47.619 0.00 0.00 32.61 2.62
96 97 1.528586 CAGCTTCTGTGTGACCTTTCG 59.471 52.381 0.00 0.00 0.00 3.46
97 98 1.139058 AGCTTCTGTGTGACCTTTCGT 59.861 47.619 0.00 0.00 0.00 3.85
98 99 2.364324 AGCTTCTGTGTGACCTTTCGTA 59.636 45.455 0.00 0.00 0.00 3.43
99 100 3.006967 AGCTTCTGTGTGACCTTTCGTAT 59.993 43.478 0.00 0.00 0.00 3.06
100 101 4.219944 AGCTTCTGTGTGACCTTTCGTATA 59.780 41.667 0.00 0.00 0.00 1.47
101 102 4.326548 GCTTCTGTGTGACCTTTCGTATAC 59.673 45.833 0.00 0.00 0.00 1.47
102 103 4.445452 TCTGTGTGACCTTTCGTATACC 57.555 45.455 0.00 0.00 0.00 2.73
103 104 3.194116 TCTGTGTGACCTTTCGTATACCC 59.806 47.826 0.00 0.00 0.00 3.69
104 105 2.094597 TGTGTGACCTTTCGTATACCCG 60.095 50.000 0.00 0.00 0.00 5.28
105 106 2.094545 GTGTGACCTTTCGTATACCCGT 60.095 50.000 0.00 0.00 0.00 5.28
106 107 3.128589 GTGTGACCTTTCGTATACCCGTA 59.871 47.826 0.00 0.00 0.00 4.02
107 108 3.378112 TGTGACCTTTCGTATACCCGTAG 59.622 47.826 0.00 0.00 0.00 3.51
108 109 3.378427 GTGACCTTTCGTATACCCGTAGT 59.622 47.826 0.00 0.00 0.00 2.73
109 110 3.378112 TGACCTTTCGTATACCCGTAGTG 59.622 47.826 0.00 0.00 0.00 2.74
110 111 2.099756 ACCTTTCGTATACCCGTAGTGC 59.900 50.000 0.00 0.00 0.00 4.40
111 112 2.378806 CTTTCGTATACCCGTAGTGCG 58.621 52.381 0.00 0.00 40.95 5.34
112 113 1.378531 TTCGTATACCCGTAGTGCGT 58.621 50.000 0.00 0.00 39.32 5.24
113 114 0.657312 TCGTATACCCGTAGTGCGTG 59.343 55.000 0.00 0.00 39.32 5.34
114 115 0.317269 CGTATACCCGTAGTGCGTGG 60.317 60.000 0.00 3.34 39.32 4.94
115 116 0.740737 GTATACCCGTAGTGCGTGGT 59.259 55.000 15.57 15.57 43.24 4.16
116 117 1.946768 GTATACCCGTAGTGCGTGGTA 59.053 52.381 18.10 18.10 44.37 3.25
117 118 1.473258 ATACCCGTAGTGCGTGGTAA 58.527 50.000 19.13 8.17 43.88 2.85
118 119 1.252175 TACCCGTAGTGCGTGGTAAA 58.748 50.000 15.06 0.81 40.66 2.01
119 120 0.392336 ACCCGTAGTGCGTGGTAAAA 59.608 50.000 11.02 0.00 40.56 1.52
120 121 1.202627 ACCCGTAGTGCGTGGTAAAAA 60.203 47.619 11.02 0.00 40.56 1.94
121 122 2.078392 CCCGTAGTGCGTGGTAAAAAT 58.922 47.619 0.00 0.00 39.32 1.82
122 123 2.485038 CCCGTAGTGCGTGGTAAAAATT 59.515 45.455 0.00 0.00 39.32 1.82
123 124 3.058085 CCCGTAGTGCGTGGTAAAAATTT 60.058 43.478 0.00 0.00 39.32 1.82
124 125 4.153835 CCCGTAGTGCGTGGTAAAAATTTA 59.846 41.667 0.00 0.00 39.32 1.40
125 126 5.318349 CCGTAGTGCGTGGTAAAAATTTAG 58.682 41.667 0.00 0.00 39.32 1.85
126 127 5.120519 CCGTAGTGCGTGGTAAAAATTTAGA 59.879 40.000 0.00 0.00 39.32 2.10
127 128 6.183360 CCGTAGTGCGTGGTAAAAATTTAGAT 60.183 38.462 0.00 0.00 39.32 1.98
128 129 7.010367 CCGTAGTGCGTGGTAAAAATTTAGATA 59.990 37.037 0.00 0.00 39.32 1.98
129 130 8.545420 CGTAGTGCGTGGTAAAAATTTAGATAT 58.455 33.333 0.00 0.00 35.54 1.63
130 131 9.859692 GTAGTGCGTGGTAAAAATTTAGATATC 57.140 33.333 0.00 0.00 0.00 1.63
131 132 7.627340 AGTGCGTGGTAAAAATTTAGATATCG 58.373 34.615 0.00 0.00 0.00 2.92
132 133 6.849305 GTGCGTGGTAAAAATTTAGATATCGG 59.151 38.462 0.00 0.00 0.00 4.18
133 134 6.539464 TGCGTGGTAAAAATTTAGATATCGGT 59.461 34.615 0.00 0.00 0.00 4.69
134 135 7.066043 TGCGTGGTAAAAATTTAGATATCGGTT 59.934 33.333 0.00 0.00 0.00 4.44
135 136 7.585210 GCGTGGTAAAAATTTAGATATCGGTTC 59.415 37.037 0.00 0.00 0.00 3.62
136 137 7.790673 CGTGGTAAAAATTTAGATATCGGTTCG 59.209 37.037 0.00 0.00 0.00 3.95
137 138 8.066000 GTGGTAAAAATTTAGATATCGGTTCGG 58.934 37.037 0.00 0.00 0.00 4.30
138 139 7.227116 TGGTAAAAATTTAGATATCGGTTCGGG 59.773 37.037 0.00 0.00 0.00 5.14
139 140 7.227314 GGTAAAAATTTAGATATCGGTTCGGGT 59.773 37.037 0.00 0.00 0.00 5.28
140 141 6.856135 AAAATTTAGATATCGGTTCGGGTC 57.144 37.500 0.00 0.00 0.00 4.46
141 142 5.540400 AATTTAGATATCGGTTCGGGTCA 57.460 39.130 0.00 0.00 0.00 4.02
142 143 5.740290 ATTTAGATATCGGTTCGGGTCAT 57.260 39.130 0.00 0.00 0.00 3.06
143 144 5.540400 TTTAGATATCGGTTCGGGTCATT 57.460 39.130 0.00 0.00 0.00 2.57
144 145 3.662247 AGATATCGGTTCGGGTCATTC 57.338 47.619 0.00 0.00 0.00 2.67
145 146 2.299297 AGATATCGGTTCGGGTCATTCC 59.701 50.000 0.00 0.00 0.00 3.01
205 206 3.768185 GAAGGAGCGCGCGTGGATA 62.768 63.158 32.35 0.00 0.00 2.59
206 207 3.151958 AAGGAGCGCGCGTGGATAT 62.152 57.895 32.35 5.81 0.00 1.63
207 208 3.106407 GGAGCGCGCGTGGATATC 61.106 66.667 32.35 15.71 0.00 1.63
208 209 3.106407 GAGCGCGCGTGGATATCC 61.106 66.667 32.35 15.39 0.00 2.59
209 210 4.664677 AGCGCGCGTGGATATCCC 62.665 66.667 32.35 11.09 34.29 3.85
210 211 4.664677 GCGCGCGTGGATATCCCT 62.665 66.667 32.35 0.00 35.38 4.20
211 212 2.430921 CGCGCGTGGATATCCCTC 60.431 66.667 24.19 11.05 35.38 4.30
212 213 2.920645 CGCGCGTGGATATCCCTCT 61.921 63.158 24.19 0.00 35.38 3.69
213 214 1.367840 GCGCGTGGATATCCCTCTT 59.632 57.895 19.34 0.00 35.38 2.85
214 215 0.946221 GCGCGTGGATATCCCTCTTG 60.946 60.000 19.34 6.53 35.38 3.02
215 216 0.389391 CGCGTGGATATCCCTCTTGT 59.611 55.000 19.34 0.00 35.38 3.16
216 217 1.202533 CGCGTGGATATCCCTCTTGTT 60.203 52.381 19.34 0.00 35.38 2.83
217 218 2.484889 GCGTGGATATCCCTCTTGTTC 58.515 52.381 19.34 0.00 35.38 3.18
218 219 2.103263 GCGTGGATATCCCTCTTGTTCT 59.897 50.000 19.34 0.00 35.38 3.01
219 220 3.800604 GCGTGGATATCCCTCTTGTTCTC 60.801 52.174 19.34 0.00 35.38 2.87
220 221 3.384789 CGTGGATATCCCTCTTGTTCTCA 59.615 47.826 19.34 0.00 35.38 3.27
221 222 4.039730 CGTGGATATCCCTCTTGTTCTCAT 59.960 45.833 19.34 0.00 35.38 2.90
222 223 5.303971 GTGGATATCCCTCTTGTTCTCATG 58.696 45.833 19.34 0.00 35.38 3.07
223 224 4.202398 TGGATATCCCTCTTGTTCTCATGC 60.202 45.833 19.34 0.00 35.38 4.06
224 225 4.041444 GGATATCCCTCTTGTTCTCATGCT 59.959 45.833 11.02 0.00 0.00 3.79
225 226 3.557228 ATCCCTCTTGTTCTCATGCTC 57.443 47.619 0.00 0.00 0.00 4.26
226 227 1.205655 TCCCTCTTGTTCTCATGCTCG 59.794 52.381 0.00 0.00 0.00 5.03
227 228 1.066573 CCCTCTTGTTCTCATGCTCGT 60.067 52.381 0.00 0.00 0.00 4.18
228 229 2.166459 CCCTCTTGTTCTCATGCTCGTA 59.834 50.000 0.00 0.00 0.00 3.43
229 230 3.182967 CCTCTTGTTCTCATGCTCGTAC 58.817 50.000 0.00 0.00 0.00 3.67
230 231 3.367395 CCTCTTGTTCTCATGCTCGTACA 60.367 47.826 0.00 0.00 0.00 2.90
231 232 4.237724 CTCTTGTTCTCATGCTCGTACAA 58.762 43.478 0.00 0.00 0.00 2.41
232 233 4.237724 TCTTGTTCTCATGCTCGTACAAG 58.762 43.478 15.82 15.82 42.18 3.16
233 234 3.660501 TGTTCTCATGCTCGTACAAGT 57.339 42.857 0.00 0.00 0.00 3.16
234 235 3.317150 TGTTCTCATGCTCGTACAAGTG 58.683 45.455 0.00 0.00 0.00 3.16
235 236 2.654749 TCTCATGCTCGTACAAGTGG 57.345 50.000 0.00 0.00 0.00 4.00
236 237 1.204704 TCTCATGCTCGTACAAGTGGG 59.795 52.381 0.00 0.00 0.00 4.61
237 238 0.249120 TCATGCTCGTACAAGTGGGG 59.751 55.000 0.00 0.00 0.00 4.96
238 239 0.249120 CATGCTCGTACAAGTGGGGA 59.751 55.000 0.00 0.00 0.00 4.81
239 240 0.981183 ATGCTCGTACAAGTGGGGAA 59.019 50.000 0.00 0.00 0.00 3.97
240 241 0.759959 TGCTCGTACAAGTGGGGAAA 59.240 50.000 0.00 0.00 0.00 3.13
241 242 1.141254 TGCTCGTACAAGTGGGGAAAA 59.859 47.619 0.00 0.00 0.00 2.29
242 243 2.223745 GCTCGTACAAGTGGGGAAAAA 58.776 47.619 0.00 0.00 0.00 1.94
277 278 3.055209 GAGGTCCAACTCCCACTAAAC 57.945 52.381 0.00 0.00 0.00 2.01
278 279 2.638363 GAGGTCCAACTCCCACTAAACT 59.362 50.000 0.00 0.00 0.00 2.66
279 280 3.836562 GAGGTCCAACTCCCACTAAACTA 59.163 47.826 0.00 0.00 0.00 2.24
280 281 3.838903 AGGTCCAACTCCCACTAAACTAG 59.161 47.826 0.00 0.00 0.00 2.57
281 282 3.597255 GTCCAACTCCCACTAAACTAGC 58.403 50.000 0.00 0.00 0.00 3.42
282 283 3.007614 GTCCAACTCCCACTAAACTAGCA 59.992 47.826 0.00 0.00 0.00 3.49
283 284 3.649023 TCCAACTCCCACTAAACTAGCAA 59.351 43.478 0.00 0.00 0.00 3.91
284 285 4.288626 TCCAACTCCCACTAAACTAGCAAT 59.711 41.667 0.00 0.00 0.00 3.56
285 286 4.396166 CCAACTCCCACTAAACTAGCAATG 59.604 45.833 0.00 0.00 0.00 2.82
286 287 4.910458 ACTCCCACTAAACTAGCAATGT 57.090 40.909 0.00 0.00 0.00 2.71
287 288 4.579869 ACTCCCACTAAACTAGCAATGTG 58.420 43.478 0.00 0.00 0.00 3.21
288 289 3.941483 CTCCCACTAAACTAGCAATGTGG 59.059 47.826 14.77 14.77 43.06 4.17
289 290 3.585289 TCCCACTAAACTAGCAATGTGGA 59.415 43.478 20.28 4.73 45.37 4.02
290 291 4.042311 TCCCACTAAACTAGCAATGTGGAA 59.958 41.667 20.28 4.36 45.37 3.53
291 292 4.156008 CCCACTAAACTAGCAATGTGGAAC 59.844 45.833 20.28 0.00 45.37 3.62
292 293 5.003804 CCACTAAACTAGCAATGTGGAACT 58.996 41.667 16.01 0.00 45.37 3.01
293 294 6.170506 CCACTAAACTAGCAATGTGGAACTA 58.829 40.000 16.01 0.00 45.37 2.24
294 295 6.653320 CCACTAAACTAGCAATGTGGAACTAA 59.347 38.462 16.01 0.00 45.37 2.24
295 296 7.174253 CCACTAAACTAGCAATGTGGAACTAAA 59.826 37.037 16.01 0.00 45.37 1.85
296 297 8.015658 CACTAAACTAGCAATGTGGAACTAAAC 58.984 37.037 0.00 0.00 38.04 2.01
297 298 7.937394 ACTAAACTAGCAATGTGGAACTAAACT 59.063 33.333 0.00 0.00 38.04 2.66
298 299 7.582667 AAACTAGCAATGTGGAACTAAACTT 57.417 32.000 0.00 0.00 38.04 2.66
299 300 7.582667 AACTAGCAATGTGGAACTAAACTTT 57.417 32.000 0.00 0.00 38.04 2.66
300 301 8.685838 AACTAGCAATGTGGAACTAAACTTTA 57.314 30.769 0.00 0.00 38.04 1.85
301 302 8.324163 ACTAGCAATGTGGAACTAAACTTTAG 57.676 34.615 6.96 6.96 38.04 1.85
302 303 7.937394 ACTAGCAATGTGGAACTAAACTTTAGT 59.063 33.333 8.19 8.19 38.04 2.24
303 304 9.431887 CTAGCAATGTGGAACTAAACTTTAGTA 57.568 33.333 13.48 0.13 38.04 1.82
304 305 8.324163 AGCAATGTGGAACTAAACTTTAGTAG 57.676 34.615 13.48 0.00 38.04 2.57
305 306 7.937394 AGCAATGTGGAACTAAACTTTAGTAGT 59.063 33.333 13.48 0.85 36.66 2.73
306 307 9.211485 GCAATGTGGAACTAAACTTTAGTAGTA 57.789 33.333 13.48 2.28 34.60 1.82
319 320 8.919777 AACTTTAGTAGTATTCTTTGCCTTGT 57.080 30.769 0.00 0.00 35.54 3.16
321 322 9.433153 ACTTTAGTAGTATTCTTTGCCTTGTAC 57.567 33.333 0.00 0.00 34.56 2.90
322 323 9.431887 CTTTAGTAGTATTCTTTGCCTTGTACA 57.568 33.333 0.00 0.00 0.00 2.90
323 324 9.781633 TTTAGTAGTATTCTTTGCCTTGTACAA 57.218 29.630 8.28 8.28 0.00 2.41
324 325 9.781633 TTAGTAGTATTCTTTGCCTTGTACAAA 57.218 29.630 10.03 0.00 35.77 2.83
325 326 8.863872 AGTAGTATTCTTTGCCTTGTACAAAT 57.136 30.769 10.03 0.26 36.49 2.32
326 327 8.730680 AGTAGTATTCTTTGCCTTGTACAAATG 58.269 33.333 10.03 5.16 36.49 2.32
327 328 6.924111 AGTATTCTTTGCCTTGTACAAATGG 58.076 36.000 10.03 9.50 36.49 3.16
328 329 4.599047 TTCTTTGCCTTGTACAAATGGG 57.401 40.909 10.03 8.77 36.49 4.00
329 330 2.298729 TCTTTGCCTTGTACAAATGGGC 59.701 45.455 23.69 23.69 42.73 5.36
330 331 2.008242 TTGCCTTGTACAAATGGGCT 57.992 45.000 27.86 0.00 42.84 5.19
331 332 2.889170 TGCCTTGTACAAATGGGCTA 57.111 45.000 27.86 16.82 42.84 3.93
332 333 3.162147 TGCCTTGTACAAATGGGCTAA 57.838 42.857 27.86 13.47 42.84 3.09
333 334 3.088532 TGCCTTGTACAAATGGGCTAAG 58.911 45.455 27.86 8.28 42.84 2.18
334 335 3.089284 GCCTTGTACAAATGGGCTAAGT 58.911 45.455 23.35 0.00 39.68 2.24
335 336 3.128764 GCCTTGTACAAATGGGCTAAGTC 59.871 47.826 23.35 1.37 39.68 3.01
336 337 3.374058 CCTTGTACAAATGGGCTAAGTCG 59.626 47.826 10.03 0.00 0.00 4.18
337 338 2.980568 TGTACAAATGGGCTAAGTCGG 58.019 47.619 0.00 0.00 0.00 4.79
338 339 1.669265 GTACAAATGGGCTAAGTCGGC 59.331 52.381 0.00 0.00 0.00 5.54
345 346 2.042800 GGCTAAGTCGGCCTCTAGG 58.957 63.158 0.00 0.00 45.57 3.02
346 347 0.467659 GGCTAAGTCGGCCTCTAGGA 60.468 60.000 0.00 0.00 45.57 2.94
347 348 1.623163 GCTAAGTCGGCCTCTAGGAT 58.377 55.000 0.00 0.00 37.39 3.24
348 349 1.964933 GCTAAGTCGGCCTCTAGGATT 59.035 52.381 0.00 0.00 37.39 3.01
349 350 2.365941 GCTAAGTCGGCCTCTAGGATTT 59.634 50.000 0.00 0.00 37.39 2.17
350 351 3.573110 GCTAAGTCGGCCTCTAGGATTTA 59.427 47.826 0.00 0.00 37.39 1.40
351 352 4.221041 GCTAAGTCGGCCTCTAGGATTTAT 59.779 45.833 0.00 0.00 37.39 1.40
352 353 5.279556 GCTAAGTCGGCCTCTAGGATTTATT 60.280 44.000 0.00 0.00 37.39 1.40
353 354 6.071503 GCTAAGTCGGCCTCTAGGATTTATTA 60.072 42.308 0.00 0.00 37.39 0.98
354 355 5.986501 AGTCGGCCTCTAGGATTTATTAG 57.013 43.478 0.00 0.00 37.39 1.73
355 356 4.773149 AGTCGGCCTCTAGGATTTATTAGG 59.227 45.833 0.00 0.00 37.39 2.69
356 357 4.771054 GTCGGCCTCTAGGATTTATTAGGA 59.229 45.833 0.00 0.00 37.39 2.94
357 358 5.245526 GTCGGCCTCTAGGATTTATTAGGAA 59.754 44.000 0.00 0.00 37.39 3.36
358 359 6.023603 TCGGCCTCTAGGATTTATTAGGAAT 58.976 40.000 0.00 0.00 37.39 3.01
359 360 6.500751 TCGGCCTCTAGGATTTATTAGGAATT 59.499 38.462 0.00 0.00 37.39 2.17
360 361 7.017254 TCGGCCTCTAGGATTTATTAGGAATTT 59.983 37.037 0.00 0.00 37.39 1.82
361 362 7.334671 CGGCCTCTAGGATTTATTAGGAATTTC 59.665 40.741 0.00 0.00 37.39 2.17
362 363 8.387039 GGCCTCTAGGATTTATTAGGAATTTCT 58.613 37.037 0.00 0.00 37.39 2.52
363 364 9.225436 GCCTCTAGGATTTATTAGGAATTTCTG 57.775 37.037 0.00 0.00 37.39 3.02
378 379 8.011844 AGGAATTTCTGAAATAGTTATTGGGC 57.988 34.615 15.45 0.00 0.00 5.36
379 380 7.841222 AGGAATTTCTGAAATAGTTATTGGGCT 59.159 33.333 15.45 0.00 0.00 5.19
380 381 7.922811 GGAATTTCTGAAATAGTTATTGGGCTG 59.077 37.037 15.45 0.00 0.00 4.85
381 382 5.835113 TTCTGAAATAGTTATTGGGCTGC 57.165 39.130 0.00 0.00 0.00 5.25
382 383 5.116084 TCTGAAATAGTTATTGGGCTGCT 57.884 39.130 0.00 0.00 0.00 4.24
383 384 5.126067 TCTGAAATAGTTATTGGGCTGCTC 58.874 41.667 0.00 0.00 0.00 4.26
384 385 4.854173 TGAAATAGTTATTGGGCTGCTCA 58.146 39.130 0.00 0.00 0.00 4.26
385 386 5.260424 TGAAATAGTTATTGGGCTGCTCAA 58.740 37.500 18.48 18.48 0.00 3.02
386 387 5.714333 TGAAATAGTTATTGGGCTGCTCAAA 59.286 36.000 20.14 2.10 0.00 2.69
387 388 6.210385 TGAAATAGTTATTGGGCTGCTCAAAA 59.790 34.615 20.14 11.73 0.00 2.44
388 389 6.796785 AATAGTTATTGGGCTGCTCAAAAT 57.203 33.333 20.14 6.30 0.00 1.82
389 390 7.896383 AATAGTTATTGGGCTGCTCAAAATA 57.104 32.000 20.14 7.79 0.00 1.40
390 391 5.841957 AGTTATTGGGCTGCTCAAAATAG 57.158 39.130 20.14 0.00 0.00 1.73
391 392 5.509498 AGTTATTGGGCTGCTCAAAATAGA 58.491 37.500 20.14 0.00 0.00 1.98
392 393 5.358160 AGTTATTGGGCTGCTCAAAATAGAC 59.642 40.000 20.14 12.65 0.00 2.59
393 394 3.439857 TTGGGCTGCTCAAAATAGACT 57.560 42.857 13.48 0.00 0.00 3.24
394 395 4.568072 TTGGGCTGCTCAAAATAGACTA 57.432 40.909 13.48 0.00 0.00 2.59
395 396 4.568072 TGGGCTGCTCAAAATAGACTAA 57.432 40.909 0.00 0.00 0.00 2.24
396 397 4.917385 TGGGCTGCTCAAAATAGACTAAA 58.083 39.130 0.00 0.00 0.00 1.85
397 398 5.509498 TGGGCTGCTCAAAATAGACTAAAT 58.491 37.500 0.00 0.00 0.00 1.40
398 399 5.951747 TGGGCTGCTCAAAATAGACTAAATT 59.048 36.000 0.00 0.00 0.00 1.82
399 400 6.095440 TGGGCTGCTCAAAATAGACTAAATTC 59.905 38.462 0.00 0.00 0.00 2.17
400 401 6.460261 GGGCTGCTCAAAATAGACTAAATTCC 60.460 42.308 0.00 0.00 0.00 3.01
401 402 6.319911 GGCTGCTCAAAATAGACTAAATTCCT 59.680 38.462 0.00 0.00 0.00 3.36
402 403 7.192232 GCTGCTCAAAATAGACTAAATTCCTG 58.808 38.462 0.00 0.00 0.00 3.86
403 404 7.088589 TGCTCAAAATAGACTAAATTCCTGC 57.911 36.000 0.00 0.00 0.00 4.85
404 405 6.658816 TGCTCAAAATAGACTAAATTCCTGCA 59.341 34.615 0.00 0.00 0.00 4.41
405 406 6.969473 GCTCAAAATAGACTAAATTCCTGCAC 59.031 38.462 0.00 0.00 0.00 4.57
406 407 7.072177 TCAAAATAGACTAAATTCCTGCACG 57.928 36.000 0.00 0.00 0.00 5.34
407 408 6.876789 TCAAAATAGACTAAATTCCTGCACGA 59.123 34.615 0.00 0.00 0.00 4.35
408 409 6.663944 AAATAGACTAAATTCCTGCACGAC 57.336 37.500 0.00 0.00 0.00 4.34
409 410 2.973945 AGACTAAATTCCTGCACGACC 58.026 47.619 0.00 0.00 0.00 4.79
410 411 2.007608 GACTAAATTCCTGCACGACCC 58.992 52.381 0.00 0.00 0.00 4.46
411 412 1.006832 CTAAATTCCTGCACGACCCG 58.993 55.000 0.00 0.00 0.00 5.28
412 413 0.322322 TAAATTCCTGCACGACCCGT 59.678 50.000 0.00 0.00 42.36 5.28
426 427 3.798337 ACGACCCGTGCTTTATTATTACG 59.202 43.478 0.00 0.00 39.18 3.18
512 513 5.629133 GCATACCCTTGAATTAGTCACCAGA 60.629 44.000 0.00 0.00 35.39 3.86
608 609 6.866480 CAATTGTGCATACCCTTGAATTAGT 58.134 36.000 0.00 0.00 0.00 2.24
609 610 6.699575 ATTGTGCATACCCTTGAATTAGTC 57.300 37.500 0.00 0.00 0.00 2.59
610 611 5.435686 TGTGCATACCCTTGAATTAGTCT 57.564 39.130 0.00 0.00 0.00 3.24
611 612 5.815581 TGTGCATACCCTTGAATTAGTCTT 58.184 37.500 0.00 0.00 0.00 3.01
719 1650 1.604185 GGAGACGGATACTGCAGCATC 60.604 57.143 17.31 17.31 0.00 3.91
731 1662 2.611292 CTGCAGCATCCTTTGTACTAGC 59.389 50.000 0.00 0.00 0.00 3.42
775 1708 1.097547 AATGATACAGCAGCCACGGC 61.098 55.000 0.00 0.00 42.33 5.68
947 1880 7.405292 AGACCATGTTCCATCTTTTATTCAGA 58.595 34.615 0.00 0.00 0.00 3.27
999 1932 0.393077 GTCCCCGTCGATCCAATCAT 59.607 55.000 0.00 0.00 0.00 2.45
1035 1968 3.369471 CCCCAGTGTACCAAGTCACATAG 60.369 52.174 0.00 0.00 37.07 2.23
1068 2001 1.955778 TCGTCAAACTTCCGTCTACCA 59.044 47.619 0.00 0.00 0.00 3.25
1089 2022 4.534103 CCAATCCCCAAACCCTTAAAATCA 59.466 41.667 0.00 0.00 0.00 2.57
1203 2137 2.996249 TCGGTCGTAGATCACCTAGT 57.004 50.000 0.00 0.00 37.64 2.57
1526 2463 5.943706 ACGTCGAGTGCTATAATCAGTAT 57.056 39.130 0.00 0.00 0.00 2.12
1537 2474 5.577164 GCTATAATCAGTATTACAGCCACCG 59.423 44.000 0.00 0.00 40.66 4.94
1619 2556 0.099968 CGCTAGCGTACTACCAGCAA 59.900 55.000 28.66 0.00 34.35 3.91
1632 2569 3.177884 AGCAACAGGGCACAGGGA 61.178 61.111 0.00 0.00 35.83 4.20
1633 2570 2.203480 GCAACAGGGCACAGGGAA 60.203 61.111 0.00 0.00 0.00 3.97
1643 2580 1.449601 CACAGGGAATTCGACCGGG 60.450 63.158 6.32 0.00 0.00 5.73
1861 2798 2.068519 TCCGCATTGATCGCATGATAC 58.931 47.619 8.54 0.00 34.09 2.24
1862 2799 2.071540 CCGCATTGATCGCATGATACT 58.928 47.619 8.54 0.00 34.09 2.12
1959 2896 6.581919 TGCGTACATAATGCATTAATTCATGC 59.418 34.615 22.37 20.96 45.29 4.06
2090 3027 3.526931 ATACTGTGGACGTTGGATCTG 57.473 47.619 0.00 0.00 0.00 2.90
2166 3103 2.215942 ATAATTTATCCTGCCGGCCC 57.784 50.000 26.77 0.00 0.00 5.80
2180 3117 2.359975 GCCCTCCTCAACCCGTTG 60.360 66.667 0.97 0.97 41.71 4.10
2201 3138 0.539438 TGTGGGAAATTTCGGCTGCT 60.539 50.000 11.95 0.00 0.00 4.24
2243 3180 1.140852 TGTTACTGCAGTGAAGCCTGT 59.859 47.619 29.57 1.79 34.84 4.00
2338 3275 6.919115 TGTTGATGCATATTGAAATTCATCCG 59.081 34.615 0.00 0.00 31.85 4.18
2343 3280 6.728200 TGCATATTGAAATTCATCCGAGTTC 58.272 36.000 0.00 0.00 0.00 3.01
2355 3292 8.842358 ATTCATCCGAGTTCTTACTGTTTTTA 57.158 30.769 0.00 0.00 33.84 1.52
2363 3300 8.944927 CGAGTTCTTACTGTTTTTAAAGCTTTC 58.055 33.333 16.57 1.00 33.84 2.62
2429 3367 5.758296 TGAGAACAACAGGATAACAACTGAC 59.242 40.000 0.00 0.00 38.09 3.51
2500 3438 3.181487 GGCATTTTCAGCGGATACACATT 60.181 43.478 0.00 0.00 0.00 2.71
2552 3490 5.092554 TCTATGGCTCCGTTTTTGTATCA 57.907 39.130 0.00 0.00 0.00 2.15
2655 3596 4.592942 AGAACATGTTGCATAGTGGTGAT 58.407 39.130 17.58 0.00 0.00 3.06
2661 3602 2.168326 TGCATAGTGGTGATATGGCG 57.832 50.000 0.00 0.00 32.35 5.69
2745 3713 2.744202 GTTCTGACATGCTGATTTCGGT 59.256 45.455 0.00 0.00 0.00 4.69
2889 3858 1.548719 GGCAATTTAAGGTGTGTCCCC 59.451 52.381 0.00 0.00 36.75 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.793144 CTGGCTGTTCGCTTCGCC 61.793 66.667 0.00 0.00 42.78 5.54
5 6 4.451652 GCTGGCTGTTCGCTTCGC 62.452 66.667 0.00 0.00 39.13 4.70
6 7 3.020026 CTGCTGGCTGTTCGCTTCG 62.020 63.158 0.00 0.00 39.13 3.79
7 8 2.866028 CTGCTGGCTGTTCGCTTC 59.134 61.111 0.00 0.00 39.13 3.86
8 9 3.360340 GCTGCTGGCTGTTCGCTT 61.360 61.111 0.00 0.00 39.13 4.68
12 13 2.669569 TTCGGCTGCTGGCTGTTC 60.670 61.111 15.09 0.00 46.74 3.18
13 14 2.670934 CTTCGGCTGCTGGCTGTT 60.671 61.111 15.09 0.00 46.74 3.16
14 15 4.711949 CCTTCGGCTGCTGGCTGT 62.712 66.667 15.09 0.00 46.74 4.40
26 27 3.423154 GAACGGTGCAGCCCTTCG 61.423 66.667 10.90 0.00 0.00 3.79
27 28 3.423154 CGAACGGTGCAGCCCTTC 61.423 66.667 10.90 10.24 0.00 3.46
31 32 3.667429 GAATGCGAACGGTGCAGCC 62.667 63.158 10.90 2.64 46.98 4.85
32 33 2.202349 GAATGCGAACGGTGCAGC 60.202 61.111 5.64 5.64 46.98 5.25
33 34 2.096406 CGAATGCGAACGGTGCAG 59.904 61.111 4.05 0.00 46.98 4.41
34 35 2.356433 TCGAATGCGAACGGTGCA 60.356 55.556 0.00 0.15 44.78 4.57
42 43 3.740044 GAAAATGGAGTTCGAATGCGA 57.260 42.857 0.00 0.00 46.33 5.10
50 51 6.769608 AAGATTTTTGCGAAAATGGAGTTC 57.230 33.333 25.93 13.22 43.61 3.01
51 52 7.279758 TGAAAAGATTTTTGCGAAAATGGAGTT 59.720 29.630 25.93 15.00 43.61 3.01
52 53 6.760770 TGAAAAGATTTTTGCGAAAATGGAGT 59.239 30.769 25.93 10.91 43.61 3.85
53 54 7.176285 TGAAAAGATTTTTGCGAAAATGGAG 57.824 32.000 25.93 0.00 43.61 3.86
54 55 6.292811 GCTGAAAAGATTTTTGCGAAAATGGA 60.293 34.615 25.93 0.13 43.61 3.41
55 56 5.847515 GCTGAAAAGATTTTTGCGAAAATGG 59.152 36.000 25.93 10.04 43.61 3.16
56 57 6.652245 AGCTGAAAAGATTTTTGCGAAAATG 58.348 32.000 25.93 12.59 43.61 2.32
57 58 6.849588 AGCTGAAAAGATTTTTGCGAAAAT 57.150 29.167 22.07 22.07 45.62 1.82
58 59 6.534793 AGAAGCTGAAAAGATTTTTGCGAAAA 59.465 30.769 14.16 14.16 38.96 2.29
59 60 6.019640 CAGAAGCTGAAAAGATTTTTGCGAAA 60.020 34.615 0.00 0.00 36.09 3.46
60 61 5.459762 CAGAAGCTGAAAAGATTTTTGCGAA 59.540 36.000 0.00 0.00 36.09 4.70
61 62 4.977963 CAGAAGCTGAAAAGATTTTTGCGA 59.022 37.500 0.00 0.00 36.09 5.10
62 63 4.741676 ACAGAAGCTGAAAAGATTTTTGCG 59.258 37.500 0.82 0.00 36.09 4.85
63 64 5.521372 ACACAGAAGCTGAAAAGATTTTTGC 59.479 36.000 0.82 8.13 35.18 3.68
64 65 6.753279 TCACACAGAAGCTGAAAAGATTTTTG 59.247 34.615 0.82 0.00 35.18 2.44
65 66 6.753744 GTCACACAGAAGCTGAAAAGATTTTT 59.246 34.615 0.82 0.00 35.18 1.94
66 67 6.268566 GTCACACAGAAGCTGAAAAGATTTT 58.731 36.000 0.82 0.00 35.18 1.82
67 68 5.221126 GGTCACACAGAAGCTGAAAAGATTT 60.221 40.000 0.82 0.00 35.18 2.17
68 69 4.276926 GGTCACACAGAAGCTGAAAAGATT 59.723 41.667 0.82 0.00 35.18 2.40
69 70 3.817647 GGTCACACAGAAGCTGAAAAGAT 59.182 43.478 0.82 0.00 35.18 2.40
70 71 3.118261 AGGTCACACAGAAGCTGAAAAGA 60.118 43.478 0.82 0.00 35.18 2.52
71 72 3.209410 AGGTCACACAGAAGCTGAAAAG 58.791 45.455 0.82 0.00 35.18 2.27
72 73 3.281727 AGGTCACACAGAAGCTGAAAA 57.718 42.857 0.82 0.00 35.18 2.29
73 74 3.281727 AAGGTCACACAGAAGCTGAAA 57.718 42.857 0.82 0.00 35.18 2.69
74 75 3.206150 GAAAGGTCACACAGAAGCTGAA 58.794 45.455 0.82 0.00 35.18 3.02
75 76 2.803133 CGAAAGGTCACACAGAAGCTGA 60.803 50.000 0.82 0.00 35.18 4.26
76 77 1.528586 CGAAAGGTCACACAGAAGCTG 59.471 52.381 0.00 0.00 37.52 4.24
77 78 1.139058 ACGAAAGGTCACACAGAAGCT 59.861 47.619 0.00 0.00 0.00 3.74
78 79 1.583054 ACGAAAGGTCACACAGAAGC 58.417 50.000 0.00 0.00 0.00 3.86
79 80 4.863131 GGTATACGAAAGGTCACACAGAAG 59.137 45.833 0.00 0.00 0.00 2.85
80 81 4.322198 GGGTATACGAAAGGTCACACAGAA 60.322 45.833 0.00 0.00 0.00 3.02
81 82 3.194116 GGGTATACGAAAGGTCACACAGA 59.806 47.826 0.00 0.00 0.00 3.41
82 83 3.518590 GGGTATACGAAAGGTCACACAG 58.481 50.000 0.00 0.00 0.00 3.66
83 84 2.094597 CGGGTATACGAAAGGTCACACA 60.095 50.000 0.00 0.00 35.47 3.72
84 85 2.094545 ACGGGTATACGAAAGGTCACAC 60.095 50.000 0.00 0.00 37.61 3.82
85 86 2.170166 ACGGGTATACGAAAGGTCACA 58.830 47.619 0.00 0.00 37.61 3.58
86 87 2.947448 ACGGGTATACGAAAGGTCAC 57.053 50.000 0.00 0.00 37.61 3.67
87 88 3.378112 CACTACGGGTATACGAAAGGTCA 59.622 47.826 0.00 0.00 37.61 4.02
88 89 3.793465 GCACTACGGGTATACGAAAGGTC 60.793 52.174 0.00 0.00 37.61 3.85
89 90 2.099756 GCACTACGGGTATACGAAAGGT 59.900 50.000 0.00 0.00 37.61 3.50
90 91 2.735823 GCACTACGGGTATACGAAAGG 58.264 52.381 0.00 0.00 37.61 3.11
91 92 2.378806 CGCACTACGGGTATACGAAAG 58.621 52.381 0.00 0.00 38.44 2.62
92 93 2.473530 CGCACTACGGGTATACGAAA 57.526 50.000 0.00 0.00 38.44 3.46
93 94 4.140427 CCACGCACTACGGGTATACGAA 62.140 54.545 0.00 0.00 46.57 3.85
94 95 2.672550 CCACGCACTACGGGTATACGA 61.673 57.143 0.00 0.00 46.57 3.43
95 96 0.317269 CCACGCACTACGGGTATACG 60.317 60.000 0.00 0.00 46.57 3.06
96 97 0.740737 ACCACGCACTACGGGTATAC 59.259 55.000 0.00 0.00 46.57 1.47
97 98 2.340210 TACCACGCACTACGGGTATA 57.660 50.000 0.00 0.00 46.57 1.47
98 99 1.473258 TTACCACGCACTACGGGTAT 58.527 50.000 0.00 0.00 46.57 2.73
99 100 1.252175 TTTACCACGCACTACGGGTA 58.748 50.000 0.00 0.00 46.57 3.69
100 101 0.392336 TTTTACCACGCACTACGGGT 59.608 50.000 0.00 0.00 46.57 5.28
104 105 9.859692 GATATCTAAATTTTTACCACGCACTAC 57.140 33.333 0.00 0.00 0.00 2.73
105 106 8.757789 CGATATCTAAATTTTTACCACGCACTA 58.242 33.333 0.00 0.00 0.00 2.74
106 107 7.254658 CCGATATCTAAATTTTTACCACGCACT 60.255 37.037 0.00 0.00 0.00 4.40
107 108 6.849305 CCGATATCTAAATTTTTACCACGCAC 59.151 38.462 0.00 0.00 0.00 5.34
108 109 6.539464 ACCGATATCTAAATTTTTACCACGCA 59.461 34.615 0.00 0.00 0.00 5.24
109 110 6.951643 ACCGATATCTAAATTTTTACCACGC 58.048 36.000 0.00 0.00 0.00 5.34
110 111 7.790673 CGAACCGATATCTAAATTTTTACCACG 59.209 37.037 0.00 0.00 0.00 4.94
111 112 8.066000 CCGAACCGATATCTAAATTTTTACCAC 58.934 37.037 0.00 0.00 0.00 4.16
112 113 7.227116 CCCGAACCGATATCTAAATTTTTACCA 59.773 37.037 0.00 0.00 0.00 3.25
113 114 7.227314 ACCCGAACCGATATCTAAATTTTTACC 59.773 37.037 0.00 0.00 0.00 2.85
114 115 8.146479 ACCCGAACCGATATCTAAATTTTTAC 57.854 34.615 0.00 0.00 0.00 2.01
115 116 7.986320 TGACCCGAACCGATATCTAAATTTTTA 59.014 33.333 0.00 0.00 0.00 1.52
116 117 6.824704 TGACCCGAACCGATATCTAAATTTTT 59.175 34.615 0.00 0.00 0.00 1.94
117 118 6.350906 TGACCCGAACCGATATCTAAATTTT 58.649 36.000 0.00 0.00 0.00 1.82
118 119 5.920903 TGACCCGAACCGATATCTAAATTT 58.079 37.500 0.34 0.00 0.00 1.82
119 120 5.540400 TGACCCGAACCGATATCTAAATT 57.460 39.130 0.34 0.00 0.00 1.82
120 121 5.740290 ATGACCCGAACCGATATCTAAAT 57.260 39.130 0.34 0.00 0.00 1.40
121 122 5.510179 GGAATGACCCGAACCGATATCTAAA 60.510 44.000 0.34 0.00 0.00 1.85
122 123 4.021719 GGAATGACCCGAACCGATATCTAA 60.022 45.833 0.34 0.00 0.00 2.10
123 124 3.508793 GGAATGACCCGAACCGATATCTA 59.491 47.826 0.34 0.00 0.00 1.98
124 125 2.299297 GGAATGACCCGAACCGATATCT 59.701 50.000 0.34 0.00 0.00 1.98
125 126 2.685100 GGAATGACCCGAACCGATATC 58.315 52.381 0.00 0.00 0.00 1.63
126 127 2.833631 GGAATGACCCGAACCGATAT 57.166 50.000 0.00 0.00 0.00 1.63
187 188 3.768185 TATCCACGCGCGCTCCTTC 62.768 63.158 32.58 0.00 0.00 3.46
188 189 3.151958 ATATCCACGCGCGCTCCTT 62.152 57.895 32.58 13.87 0.00 3.36
189 190 3.559657 GATATCCACGCGCGCTCCT 62.560 63.158 32.58 15.26 0.00 3.69
190 191 3.106407 GATATCCACGCGCGCTCC 61.106 66.667 32.58 8.46 0.00 4.70
191 192 3.106407 GGATATCCACGCGCGCTC 61.106 66.667 32.58 17.47 35.64 5.03
192 193 4.664677 GGGATATCCACGCGCGCT 62.665 66.667 32.58 14.89 37.91 5.92
193 194 4.664677 AGGGATATCCACGCGCGC 62.665 66.667 32.58 23.91 38.24 6.86
194 195 2.421877 AAGAGGGATATCCACGCGCG 62.422 60.000 30.96 30.96 38.24 6.86
195 196 0.946221 CAAGAGGGATATCCACGCGC 60.946 60.000 23.27 7.99 38.24 6.86
196 197 0.389391 ACAAGAGGGATATCCACGCG 59.611 55.000 23.27 3.53 38.24 6.01
197 198 2.103263 AGAACAAGAGGGATATCCACGC 59.897 50.000 23.27 13.70 38.24 5.34
198 199 3.384789 TGAGAACAAGAGGGATATCCACG 59.615 47.826 23.27 8.54 38.24 4.94
199 200 5.303971 CATGAGAACAAGAGGGATATCCAC 58.696 45.833 23.27 15.62 38.24 4.02
200 201 4.202398 GCATGAGAACAAGAGGGATATCCA 60.202 45.833 23.27 0.00 38.24 3.41
201 202 4.041444 AGCATGAGAACAAGAGGGATATCC 59.959 45.833 13.87 13.87 0.00 2.59
202 203 5.226194 AGCATGAGAACAAGAGGGATATC 57.774 43.478 0.00 0.00 0.00 1.63
203 204 4.262377 CGAGCATGAGAACAAGAGGGATAT 60.262 45.833 0.00 0.00 0.00 1.63
204 205 3.068732 CGAGCATGAGAACAAGAGGGATA 59.931 47.826 0.00 0.00 0.00 2.59
205 206 2.158986 CGAGCATGAGAACAAGAGGGAT 60.159 50.000 0.00 0.00 0.00 3.85
206 207 1.205655 CGAGCATGAGAACAAGAGGGA 59.794 52.381 0.00 0.00 0.00 4.20
207 208 1.066573 ACGAGCATGAGAACAAGAGGG 60.067 52.381 0.00 0.00 0.00 4.30
208 209 2.376808 ACGAGCATGAGAACAAGAGG 57.623 50.000 0.00 0.00 0.00 3.69
209 210 3.838120 TGTACGAGCATGAGAACAAGAG 58.162 45.455 0.00 0.00 0.00 2.85
210 211 3.934457 TGTACGAGCATGAGAACAAGA 57.066 42.857 0.00 0.00 0.00 3.02
211 212 3.990469 ACTTGTACGAGCATGAGAACAAG 59.010 43.478 10.23 17.73 45.76 3.16
212 213 3.740832 CACTTGTACGAGCATGAGAACAA 59.259 43.478 10.23 0.00 0.00 2.83
213 214 3.317150 CACTTGTACGAGCATGAGAACA 58.683 45.455 10.23 0.00 0.00 3.18
214 215 2.668457 CCACTTGTACGAGCATGAGAAC 59.332 50.000 10.23 0.00 0.00 3.01
215 216 2.353704 CCCACTTGTACGAGCATGAGAA 60.354 50.000 10.23 0.00 0.00 2.87
216 217 1.204704 CCCACTTGTACGAGCATGAGA 59.795 52.381 10.23 0.00 0.00 3.27
217 218 1.645034 CCCACTTGTACGAGCATGAG 58.355 55.000 10.23 0.00 0.00 2.90
218 219 0.249120 CCCCACTTGTACGAGCATGA 59.751 55.000 10.23 0.00 0.00 3.07
219 220 0.249120 TCCCCACTTGTACGAGCATG 59.751 55.000 10.23 2.06 0.00 4.06
220 221 0.981183 TTCCCCACTTGTACGAGCAT 59.019 50.000 10.23 0.00 0.00 3.79
221 222 0.759959 TTTCCCCACTTGTACGAGCA 59.240 50.000 10.23 0.00 0.00 4.26
222 223 1.886886 TTTTCCCCACTTGTACGAGC 58.113 50.000 10.23 0.00 0.00 5.03
245 246 4.299485 AGTTGGACCTCCTTATAAGGGAG 58.701 47.826 27.65 21.83 46.47 4.30
246 247 4.296056 GAGTTGGACCTCCTTATAAGGGA 58.704 47.826 27.65 15.21 46.47 4.20
247 248 3.391626 GGAGTTGGACCTCCTTATAAGGG 59.608 52.174 27.65 18.78 46.34 3.95
248 249 4.691326 GGAGTTGGACCTCCTTATAAGG 57.309 50.000 23.54 23.54 46.34 2.69
257 258 2.638363 AGTTTAGTGGGAGTTGGACCTC 59.362 50.000 0.00 0.00 0.00 3.85
258 259 2.702748 AGTTTAGTGGGAGTTGGACCT 58.297 47.619 0.00 0.00 0.00 3.85
259 260 3.619242 GCTAGTTTAGTGGGAGTTGGACC 60.619 52.174 0.00 0.00 0.00 4.46
260 261 3.007614 TGCTAGTTTAGTGGGAGTTGGAC 59.992 47.826 0.00 0.00 0.00 4.02
261 262 3.244582 TGCTAGTTTAGTGGGAGTTGGA 58.755 45.455 0.00 0.00 0.00 3.53
262 263 3.695830 TGCTAGTTTAGTGGGAGTTGG 57.304 47.619 0.00 0.00 0.00 3.77
263 264 5.003804 ACATTGCTAGTTTAGTGGGAGTTG 58.996 41.667 0.00 0.00 0.00 3.16
264 265 5.003804 CACATTGCTAGTTTAGTGGGAGTT 58.996 41.667 0.00 0.00 0.00 3.01
265 266 4.565652 CCACATTGCTAGTTTAGTGGGAGT 60.566 45.833 14.75 0.00 42.04 3.85
266 267 3.941483 CCACATTGCTAGTTTAGTGGGAG 59.059 47.826 14.75 0.00 42.04 4.30
267 268 3.585289 TCCACATTGCTAGTTTAGTGGGA 59.415 43.478 19.40 6.05 44.94 4.37
268 269 3.950397 TCCACATTGCTAGTTTAGTGGG 58.050 45.455 19.40 4.81 44.94 4.61
269 270 5.003804 AGTTCCACATTGCTAGTTTAGTGG 58.996 41.667 15.82 15.82 45.92 4.00
270 271 7.667043 TTAGTTCCACATTGCTAGTTTAGTG 57.333 36.000 0.00 0.00 0.00 2.74
271 272 7.937394 AGTTTAGTTCCACATTGCTAGTTTAGT 59.063 33.333 0.00 0.00 0.00 2.24
272 273 8.324163 AGTTTAGTTCCACATTGCTAGTTTAG 57.676 34.615 0.00 0.00 0.00 1.85
273 274 8.685838 AAGTTTAGTTCCACATTGCTAGTTTA 57.314 30.769 0.00 0.00 0.00 2.01
274 275 7.582667 AAGTTTAGTTCCACATTGCTAGTTT 57.417 32.000 0.00 0.00 0.00 2.66
275 276 7.582667 AAAGTTTAGTTCCACATTGCTAGTT 57.417 32.000 0.00 0.00 0.00 2.24
276 277 7.937394 ACTAAAGTTTAGTTCCACATTGCTAGT 59.063 33.333 20.34 0.00 0.00 2.57
277 278 8.324163 ACTAAAGTTTAGTTCCACATTGCTAG 57.676 34.615 20.34 0.00 0.00 3.42
278 279 9.431887 CTACTAAAGTTTAGTTCCACATTGCTA 57.568 33.333 28.44 9.27 0.00 3.49
279 280 7.937394 ACTACTAAAGTTTAGTTCCACATTGCT 59.063 33.333 28.44 6.44 33.35 3.91
280 281 8.095937 ACTACTAAAGTTTAGTTCCACATTGC 57.904 34.615 28.44 0.00 33.35 3.56
293 294 9.350951 ACAAGGCAAAGAATACTACTAAAGTTT 57.649 29.630 0.00 0.00 39.80 2.66
294 295 8.919777 ACAAGGCAAAGAATACTACTAAAGTT 57.080 30.769 0.00 0.00 39.80 2.66
295 296 9.433153 GTACAAGGCAAAGAATACTACTAAAGT 57.567 33.333 0.00 0.00 42.62 2.66
296 297 9.431887 TGTACAAGGCAAAGAATACTACTAAAG 57.568 33.333 0.00 0.00 0.00 1.85
297 298 9.781633 TTGTACAAGGCAAAGAATACTACTAAA 57.218 29.630 3.59 0.00 0.00 1.85
298 299 9.781633 TTTGTACAAGGCAAAGAATACTACTAA 57.218 29.630 8.56 0.00 32.75 2.24
299 300 9.953565 ATTTGTACAAGGCAAAGAATACTACTA 57.046 29.630 8.56 0.00 38.91 1.82
300 301 8.730680 CATTTGTACAAGGCAAAGAATACTACT 58.269 33.333 8.56 0.00 38.91 2.57
301 302 7.968405 CCATTTGTACAAGGCAAAGAATACTAC 59.032 37.037 8.56 0.00 38.91 2.73
302 303 7.122055 CCCATTTGTACAAGGCAAAGAATACTA 59.878 37.037 8.56 0.00 38.91 1.82
303 304 6.071391 CCCATTTGTACAAGGCAAAGAATACT 60.071 38.462 8.56 0.00 38.91 2.12
304 305 6.099341 CCCATTTGTACAAGGCAAAGAATAC 58.901 40.000 8.56 0.00 38.91 1.89
305 306 5.337169 GCCCATTTGTACAAGGCAAAGAATA 60.337 40.000 24.88 2.68 43.32 1.75
306 307 4.563374 GCCCATTTGTACAAGGCAAAGAAT 60.563 41.667 24.88 6.02 43.32 2.40
307 308 3.244044 GCCCATTTGTACAAGGCAAAGAA 60.244 43.478 24.88 4.00 43.32 2.52
308 309 2.298729 GCCCATTTGTACAAGGCAAAGA 59.701 45.455 24.88 4.68 43.32 2.52
309 310 2.299867 AGCCCATTTGTACAAGGCAAAG 59.700 45.455 28.94 12.04 46.35 2.77
310 311 2.324541 AGCCCATTTGTACAAGGCAAA 58.675 42.857 28.94 9.29 46.35 3.68
311 312 2.008242 AGCCCATTTGTACAAGGCAA 57.992 45.000 28.94 9.63 46.35 4.52
312 313 2.889170 TAGCCCATTTGTACAAGGCA 57.111 45.000 28.94 17.28 46.35 4.75
313 314 3.089284 ACTTAGCCCATTTGTACAAGGC 58.911 45.455 23.24 23.24 44.20 4.35
314 315 3.374058 CGACTTAGCCCATTTGTACAAGG 59.626 47.826 8.56 8.13 0.00 3.61
315 316 3.374058 CCGACTTAGCCCATTTGTACAAG 59.626 47.826 8.56 0.00 0.00 3.16
316 317 3.340034 CCGACTTAGCCCATTTGTACAA 58.660 45.455 3.59 3.59 0.00 2.41
317 318 2.937873 GCCGACTTAGCCCATTTGTACA 60.938 50.000 0.00 0.00 0.00 2.90
318 319 1.669265 GCCGACTTAGCCCATTTGTAC 59.331 52.381 0.00 0.00 0.00 2.90
319 320 1.407712 GGCCGACTTAGCCCATTTGTA 60.408 52.381 0.00 0.00 45.16 2.41
320 321 0.679960 GGCCGACTTAGCCCATTTGT 60.680 55.000 0.00 0.00 45.16 2.83
321 322 2.106844 GGCCGACTTAGCCCATTTG 58.893 57.895 0.00 0.00 45.16 2.32
322 323 4.657952 GGCCGACTTAGCCCATTT 57.342 55.556 0.00 0.00 45.16 2.32
328 329 1.623163 ATCCTAGAGGCCGACTTAGC 58.377 55.000 10.48 0.00 34.44 3.09
329 330 5.986501 ATAAATCCTAGAGGCCGACTTAG 57.013 43.478 10.48 5.13 34.44 2.18
330 331 6.436532 CCTAATAAATCCTAGAGGCCGACTTA 59.563 42.308 10.48 0.00 34.44 2.24
331 332 5.246429 CCTAATAAATCCTAGAGGCCGACTT 59.754 44.000 10.48 0.00 34.44 3.01
332 333 4.773149 CCTAATAAATCCTAGAGGCCGACT 59.227 45.833 10.12 10.12 34.44 4.18
333 334 4.771054 TCCTAATAAATCCTAGAGGCCGAC 59.229 45.833 0.00 0.00 34.44 4.79
334 335 5.006896 TCCTAATAAATCCTAGAGGCCGA 57.993 43.478 0.00 0.00 34.44 5.54
335 336 5.740290 TTCCTAATAAATCCTAGAGGCCG 57.260 43.478 0.00 0.00 34.44 6.13
336 337 8.387039 AGAAATTCCTAATAAATCCTAGAGGCC 58.613 37.037 0.00 0.00 34.44 5.19
337 338 9.225436 CAGAAATTCCTAATAAATCCTAGAGGC 57.775 37.037 0.00 0.00 34.44 4.70
352 353 9.131791 GCCCAATAACTATTTCAGAAATTCCTA 57.868 33.333 13.71 3.88 32.38 2.94
353 354 7.841222 AGCCCAATAACTATTTCAGAAATTCCT 59.159 33.333 13.71 1.87 32.38 3.36
354 355 7.922811 CAGCCCAATAACTATTTCAGAAATTCC 59.077 37.037 13.71 0.00 32.38 3.01
355 356 7.436376 GCAGCCCAATAACTATTTCAGAAATTC 59.564 37.037 13.71 0.00 32.38 2.17
356 357 7.124750 AGCAGCCCAATAACTATTTCAGAAATT 59.875 33.333 13.71 0.00 32.38 1.82
357 358 6.608808 AGCAGCCCAATAACTATTTCAGAAAT 59.391 34.615 13.06 13.06 34.90 2.17
358 359 5.951747 AGCAGCCCAATAACTATTTCAGAAA 59.048 36.000 0.00 0.00 0.00 2.52
359 360 5.509498 AGCAGCCCAATAACTATTTCAGAA 58.491 37.500 0.00 0.00 0.00 3.02
360 361 5.116084 AGCAGCCCAATAACTATTTCAGA 57.884 39.130 0.00 0.00 0.00 3.27
361 362 4.883585 TGAGCAGCCCAATAACTATTTCAG 59.116 41.667 0.00 0.00 0.00 3.02
362 363 4.854173 TGAGCAGCCCAATAACTATTTCA 58.146 39.130 0.00 0.00 0.00 2.69
363 364 5.835113 TTGAGCAGCCCAATAACTATTTC 57.165 39.130 0.00 0.00 0.00 2.17
364 365 6.603940 TTTTGAGCAGCCCAATAACTATTT 57.396 33.333 0.00 0.00 0.00 1.40
365 366 6.796785 ATTTTGAGCAGCCCAATAACTATT 57.203 33.333 0.00 0.00 0.00 1.73
366 367 7.229506 GTCTATTTTGAGCAGCCCAATAACTAT 59.770 37.037 0.00 0.00 0.00 2.12
367 368 6.542370 GTCTATTTTGAGCAGCCCAATAACTA 59.458 38.462 0.00 0.00 0.00 2.24
368 369 5.358160 GTCTATTTTGAGCAGCCCAATAACT 59.642 40.000 0.00 0.00 0.00 2.24
369 370 5.358160 AGTCTATTTTGAGCAGCCCAATAAC 59.642 40.000 0.00 0.00 0.00 1.89
370 371 5.509498 AGTCTATTTTGAGCAGCCCAATAA 58.491 37.500 0.00 0.00 0.00 1.40
371 372 5.116084 AGTCTATTTTGAGCAGCCCAATA 57.884 39.130 0.00 0.00 0.00 1.90
372 373 3.973425 AGTCTATTTTGAGCAGCCCAAT 58.027 40.909 0.00 0.00 0.00 3.16
373 374 3.439857 AGTCTATTTTGAGCAGCCCAA 57.560 42.857 0.00 0.00 0.00 4.12
374 375 4.568072 TTAGTCTATTTTGAGCAGCCCA 57.432 40.909 0.00 0.00 0.00 5.36
375 376 6.456795 AATTTAGTCTATTTTGAGCAGCCC 57.543 37.500 0.00 0.00 0.00 5.19
376 377 6.319911 AGGAATTTAGTCTATTTTGAGCAGCC 59.680 38.462 0.00 0.00 0.00 4.85
377 378 7.192232 CAGGAATTTAGTCTATTTTGAGCAGC 58.808 38.462 0.00 0.00 0.00 5.25
378 379 7.148188 TGCAGGAATTTAGTCTATTTTGAGCAG 60.148 37.037 0.00 0.00 0.00 4.24
379 380 6.658816 TGCAGGAATTTAGTCTATTTTGAGCA 59.341 34.615 0.00 0.00 0.00 4.26
380 381 6.969473 GTGCAGGAATTTAGTCTATTTTGAGC 59.031 38.462 0.00 0.00 0.00 4.26
381 382 7.064609 TCGTGCAGGAATTTAGTCTATTTTGAG 59.935 37.037 6.64 0.00 0.00 3.02
382 383 6.876789 TCGTGCAGGAATTTAGTCTATTTTGA 59.123 34.615 6.64 0.00 0.00 2.69
383 384 6.961554 GTCGTGCAGGAATTTAGTCTATTTTG 59.038 38.462 11.28 0.00 0.00 2.44
384 385 6.093633 GGTCGTGCAGGAATTTAGTCTATTTT 59.906 38.462 11.28 0.00 0.00 1.82
385 386 5.585047 GGTCGTGCAGGAATTTAGTCTATTT 59.415 40.000 11.28 0.00 0.00 1.40
386 387 5.116882 GGTCGTGCAGGAATTTAGTCTATT 58.883 41.667 11.28 0.00 0.00 1.73
387 388 4.443034 GGGTCGTGCAGGAATTTAGTCTAT 60.443 45.833 11.28 0.00 0.00 1.98
388 389 3.118884 GGGTCGTGCAGGAATTTAGTCTA 60.119 47.826 11.28 0.00 0.00 2.59
389 390 2.354805 GGGTCGTGCAGGAATTTAGTCT 60.355 50.000 11.28 0.00 0.00 3.24
390 391 2.007608 GGGTCGTGCAGGAATTTAGTC 58.992 52.381 11.28 0.00 0.00 2.59
391 392 1.674817 CGGGTCGTGCAGGAATTTAGT 60.675 52.381 11.28 0.00 0.00 2.24
392 393 1.006832 CGGGTCGTGCAGGAATTTAG 58.993 55.000 11.28 0.00 0.00 1.85
393 394 0.322322 ACGGGTCGTGCAGGAATTTA 59.678 50.000 11.28 0.00 39.18 1.40
394 395 1.072505 ACGGGTCGTGCAGGAATTT 59.927 52.632 11.28 0.00 39.18 1.82
395 396 2.747686 ACGGGTCGTGCAGGAATT 59.252 55.556 11.28 0.00 39.18 2.17
404 405 3.798337 CGTAATAATAAAGCACGGGTCGT 59.202 43.478 0.00 0.00 42.36 4.34
405 406 3.182972 CCGTAATAATAAAGCACGGGTCG 59.817 47.826 3.60 0.00 46.43 4.79
406 407 4.720530 CCGTAATAATAAAGCACGGGTC 57.279 45.455 3.60 0.00 46.43 4.46
460 461 7.700505 TGCATACACAATCATTTTTGCAAAAA 58.299 26.923 32.91 32.91 41.59 1.94
461 462 7.255491 TGCATACACAATCATTTTTGCAAAA 57.745 28.000 20.46 20.46 36.06 2.44
462 463 6.856135 TGCATACACAATCATTTTTGCAAA 57.144 29.167 8.05 8.05 36.06 3.68
463 464 7.298854 CAATGCATACACAATCATTTTTGCAA 58.701 30.769 0.00 0.00 41.58 4.08
464 465 6.620949 GCAATGCATACACAATCATTTTTGCA 60.621 34.615 0.00 0.00 42.35 4.08
465 466 5.735427 GCAATGCATACACAATCATTTTTGC 59.265 36.000 0.00 0.00 0.00 3.68
466 467 6.832804 TGCAATGCATACACAATCATTTTTG 58.167 32.000 2.72 0.00 31.71 2.44
539 540 7.913297 TGCAAAAGCGAATTAGTTTATATGTCC 59.087 33.333 0.00 0.00 0.00 4.02
584 585 6.866480 ACTAATTCAAGGGTATGCACAATTG 58.134 36.000 3.24 3.24 0.00 2.32
585 586 6.891908 AGACTAATTCAAGGGTATGCACAATT 59.108 34.615 0.00 0.00 0.00 2.32
586 587 6.426587 AGACTAATTCAAGGGTATGCACAAT 58.573 36.000 0.00 0.00 0.00 2.71
587 588 5.815581 AGACTAATTCAAGGGTATGCACAA 58.184 37.500 0.00 0.00 0.00 3.33
654 1585 4.379143 TCTGCGTCGTCCGTGTCG 62.379 66.667 0.00 0.00 39.32 4.35
657 1588 4.778415 CCCTCTGCGTCGTCCGTG 62.778 72.222 0.00 0.00 39.32 4.94
707 1638 4.494091 AGTACAAAGGATGCTGCAGTAT 57.506 40.909 17.87 17.87 0.00 2.12
719 1650 7.849804 ATCATTACTGTTGCTAGTACAAAGG 57.150 36.000 0.00 0.00 33.14 3.11
731 1662 6.151004 TCAATGCACACAATCATTACTGTTG 58.849 36.000 0.00 0.00 32.22 3.33
835 1768 0.815734 ACATTCAATGAGCAGCTGGC 59.184 50.000 17.12 7.98 45.30 4.85
947 1880 5.733620 ACATTGGAATCATCAGCAGTTTT 57.266 34.783 0.00 0.00 0.00 2.43
999 1932 9.395068 TGGTACACTGGGGATTATATTTATGTA 57.605 33.333 0.00 0.00 0.00 2.29
1035 1968 1.144969 TTGACGACGAGATGGCAAAC 58.855 50.000 0.00 0.00 0.00 2.93
1068 2001 6.028780 TGATGATTTTAAGGGTTTGGGGATT 58.971 36.000 0.00 0.00 0.00 3.01
1089 2022 5.744345 GTGTACGATCGATCAAGTTTCTGAT 59.256 40.000 24.34 0.00 38.79 2.90
1203 2137 2.125147 GCTGCCACTCGCCATGTA 60.125 61.111 0.00 0.00 36.24 2.29
1418 2355 1.656818 GGTGGATGTTCATGTGCCCG 61.657 60.000 0.00 0.00 0.00 6.13
1537 2474 2.203070 CTGTGGGATACGGCAGGC 60.203 66.667 0.00 0.00 35.99 4.85
1619 2556 1.002134 CGAATTCCCTGTGCCCTGT 60.002 57.895 0.00 0.00 0.00 4.00
1861 2798 0.517316 GGTTAACCGCAGTTGCAGAG 59.483 55.000 9.34 0.00 42.21 3.35
1862 2799 0.179043 TGGTTAACCGCAGTTGCAGA 60.179 50.000 19.65 0.00 42.21 4.26
1880 2817 6.018751 ACGTAGTATTTGTATGAGCTGCATTG 60.019 38.462 1.02 0.00 41.94 2.82
2020 2957 7.527568 TTAACAACTGGAACCGGAATAAAAT 57.472 32.000 9.46 0.00 0.00 1.82
2021 2958 6.956202 TTAACAACTGGAACCGGAATAAAA 57.044 33.333 9.46 0.00 0.00 1.52
2028 2965 8.717821 CATACATATATTAACAACTGGAACCGG 58.282 37.037 0.00 0.00 0.00 5.28
2090 3027 5.538067 GACTCTGTCCTAAGATTTGCAAC 57.462 43.478 0.00 0.00 0.00 4.17
2180 3117 1.469767 GCAGCCGAAATTTCCCACATC 60.470 52.381 12.54 0.00 0.00 3.06
2243 3180 0.252881 AAGCCCCAGAGGAGATGTGA 60.253 55.000 0.00 0.00 38.24 3.58
2343 3280 9.657121 CTCTGAGAAAGCTTTAAAAACAGTAAG 57.343 33.333 12.68 7.86 0.00 2.34
2355 3292 8.728833 CACAAAATAGATCTCTGAGAAAGCTTT 58.271 33.333 12.53 12.53 0.00 3.51
2429 3367 1.330829 GAAATTCCCGAGGCTTTAGCG 59.669 52.381 0.00 0.00 43.26 4.26
2476 3414 2.163412 GTGTATCCGCTGAAAATGCCAA 59.837 45.455 0.00 0.00 0.00 4.52
2500 3438 9.953697 AAAATAACAATAAGTTCTTACGTTGCA 57.046 25.926 0.00 0.00 41.64 4.08
2527 3465 3.074412 ACAAAAACGGAGCCATAGAGTG 58.926 45.455 0.00 0.00 0.00 3.51
2565 3503 9.201127 CCACTATACATCATACTCATTCACTTG 57.799 37.037 0.00 0.00 0.00 3.16
2644 3585 1.270785 TGGCGCCATATCACCACTATG 60.271 52.381 29.03 0.00 0.00 2.23
2655 3596 0.829333 AAAATTGCCATGGCGCCATA 59.171 45.000 39.94 25.96 45.51 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.