Multiple sequence alignment - TraesCS1A01G128300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G128300 chr1A 100.000 4519 0 0 2157 6675 157315662 157311144 0.000000e+00 8346.0
1 TraesCS1A01G128300 chr1A 100.000 1755 0 0 1 1755 157317818 157316064 0.000000e+00 3241.0
2 TraesCS1A01G128300 chr1A 96.429 112 1 2 4157 4268 238114699 238114591 1.480000e-41 182.0
3 TraesCS1A01G128300 chr1B 97.351 2001 46 4 2157 4157 206427587 206429580 0.000000e+00 3395.0
4 TraesCS1A01G128300 chr1B 94.353 1877 67 10 4255 6113 206429578 206431433 0.000000e+00 2843.0
5 TraesCS1A01G128300 chr1B 96.880 609 15 2 982 1587 206426911 206427518 0.000000e+00 1016.0
6 TraesCS1A01G128300 chr1B 89.631 569 42 2 6105 6673 206431470 206432021 0.000000e+00 708.0
7 TraesCS1A01G128300 chr1B 90.726 248 21 2 1 247 206418676 206418922 4.990000e-86 329.0
8 TraesCS1A01G128300 chr1B 100.000 166 0 0 1584 1749 277766484 277766649 2.340000e-79 307.0
9 TraesCS1A01G128300 chr1B 90.338 207 17 1 263 469 206418911 206419114 1.100000e-67 268.0
10 TraesCS1A01G128300 chr1B 94.565 92 5 0 454 545 206421828 206421919 6.980000e-30 143.0
11 TraesCS1A01G128300 chr1B 83.505 97 12 4 6579 6673 564739366 564739272 3.320000e-13 87.9
12 TraesCS1A01G128300 chr1D 96.213 1875 51 9 4256 6113 131289670 131291541 0.000000e+00 3051.0
13 TraesCS1A01G128300 chr1D 97.622 1598 25 9 2157 3749 131287346 131288935 0.000000e+00 2728.0
14 TraesCS1A01G128300 chr1D 89.841 1319 82 20 276 1587 131286005 131287278 0.000000e+00 1646.0
15 TraesCS1A01G128300 chr1D 95.086 407 19 1 3749 4154 131289262 131289668 2.030000e-179 640.0
16 TraesCS1A01G128300 chr1D 96.203 158 5 1 6339 6496 131304623 131304779 2.390000e-64 257.0
17 TraesCS1A01G128300 chr1D 94.340 159 8 1 6105 6262 131291578 131291736 6.690000e-60 243.0
18 TraesCS1A01G128300 chr1D 89.286 140 15 0 6534 6673 131304774 131304913 6.880000e-40 176.0
19 TraesCS1A01G128300 chr1D 97.917 48 0 1 6300 6346 131291739 131291786 1.540000e-11 82.4
20 TraesCS1A01G128300 chr3D 86.119 353 39 7 264 614 47246558 47246214 8.180000e-99 372.0
21 TraesCS1A01G128300 chr7D 83.616 354 45 5 263 614 156828059 156828401 3.000000e-83 320.0
22 TraesCS1A01G128300 chr7D 78.652 356 72 3 264 617 227575047 227574694 4.020000e-57 233.0
23 TraesCS1A01G128300 chr5B 95.833 168 7 0 1583 1750 98266741 98266574 8.530000e-69 272.0
24 TraesCS1A01G128300 chr5B 91.124 169 15 0 1582 1750 399803360 399803192 5.210000e-56 230.0
25 TraesCS1A01G128300 chr5B 88.272 162 19 0 1586 1747 446032297 446032136 1.900000e-45 195.0
26 TraesCS1A01G128300 chr5B 96.429 112 1 2 4157 4268 533063872 533063764 1.480000e-41 182.0
27 TraesCS1A01G128300 chrUn 96.429 112 1 2 4157 4268 86446332 86446224 1.480000e-41 182.0
28 TraesCS1A01G128300 chrUn 96.429 112 1 2 4157 4268 260197986 260198094 1.480000e-41 182.0
29 TraesCS1A01G128300 chrUn 96.429 112 1 2 4157 4268 393425930 393426038 1.480000e-41 182.0
30 TraesCS1A01G128300 chrUn 96.429 112 1 2 4157 4268 446445497 446445389 1.480000e-41 182.0
31 TraesCS1A01G128300 chr7B 96.429 112 1 2 4157 4268 742922456 742922348 1.480000e-41 182.0
32 TraesCS1A01G128300 chr7B 86.325 117 16 0 6557 6673 577673238 577673122 1.950000e-25 128.0
33 TraesCS1A01G128300 chr6A 96.429 112 1 2 4157 4268 84439907 84439799 1.480000e-41 182.0
34 TraesCS1A01G128300 chr3B 96.429 112 1 2 4157 4268 6037634 6037526 1.480000e-41 182.0
35 TraesCS1A01G128300 chr7A 85.093 161 23 1 1586 1745 646810008 646810168 5.360000e-36 163.0
36 TraesCS1A01G128300 chr2A 81.739 115 21 0 6559 6673 228859764 228859650 5.510000e-16 97.1
37 TraesCS1A01G128300 chr2A 81.818 77 13 1 6598 6674 84555473 84555548 5.590000e-06 63.9
38 TraesCS1A01G128300 chr6B 80.000 115 23 0 6559 6673 592472341 592472227 1.190000e-12 86.1
39 TraesCS1A01G128300 chr5A 85.714 77 9 2 6598 6673 564535856 564535781 5.550000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G128300 chr1A 157311144 157317818 6674 True 5793.500000 8346 100.000000 1 6675 2 chr1A.!!$R2 6674
1 TraesCS1A01G128300 chr1B 206426911 206432021 5110 False 1990.500000 3395 94.553750 982 6673 4 chr1B.!!$F3 5691
2 TraesCS1A01G128300 chr1B 206418676 206421919 3243 False 246.666667 329 91.876333 1 545 3 chr1B.!!$F2 544
3 TraesCS1A01G128300 chr1D 131286005 131291786 5781 False 1398.400000 3051 95.169833 276 6346 6 chr1D.!!$F1 6070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
563 3293 0.100503 TGAATCTTCGCGCAGATCGA 59.899 50.000 21.28 8.47 41.67 3.59 F
782 3515 0.108329 CGTTCGTATGAGGCCCTGTT 60.108 55.000 0.00 0.00 0.00 3.16 F
1666 4403 0.233590 TGTCGTTTCATTTCCGCGTG 59.766 50.000 4.92 0.00 0.00 5.34 F
1667 4404 0.233848 GTCGTTTCATTTCCGCGTGT 59.766 50.000 4.92 0.00 0.00 4.49 F
1742 4479 1.013596 TTACATCCAATCCAAGCGCG 58.986 50.000 0.00 0.00 0.00 6.86 F
1743 4480 1.436195 TACATCCAATCCAAGCGCGC 61.436 55.000 26.66 26.66 0.00 6.86 F
3963 7033 1.005289 AGGGTGGGCTCCAGATGAT 59.995 57.895 0.00 0.00 32.34 2.45 F
4156 7226 0.250295 TTGGGAGAACTGTCCTTGCG 60.250 55.000 0.00 0.00 36.75 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1648 4385 0.233848 ACACGCGGAAATGAAACGAC 59.766 50.000 12.47 0.00 0.00 4.34 R
1723 4460 1.013596 CGCGCTTGGATTGGATGTAA 58.986 50.000 5.56 0.00 0.00 2.41 R
3298 6040 4.734398 ACACAATTGCAGAACTTCCAAA 57.266 36.364 5.05 0.00 0.00 3.28 R
3466 6208 5.450453 ACTGATGCTACTGTACTCAGGTAT 58.550 41.667 15.87 0.39 45.14 2.73 R
3963 7033 2.777094 TGTCAATTCGGCAGTGATTCA 58.223 42.857 0.00 0.00 0.00 2.57 R
3972 7042 4.980590 TGTTATGTTGATGTCAATTCGGC 58.019 39.130 0.00 0.00 38.24 5.54 R
5621 8699 0.320374 TTCGGAGAAACTGGCACGAT 59.680 50.000 0.00 0.00 45.90 3.73 R
6262 9395 1.465777 CGCATGCACAAGACTCAATCA 59.534 47.619 19.57 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.504815 GTTGAAGGAGGACAAAGTAATAGAAAC 58.495 37.037 0.00 0.00 0.00 2.78
36 37 6.631962 AGGAGGACAAAGTAATAGAAACGAG 58.368 40.000 0.00 0.00 0.00 4.18
51 52 6.667007 AGAAACGAGTTAAAGAAAAACCGA 57.333 33.333 0.00 0.00 0.00 4.69
62 63 4.983671 AGAAAAACCGATCAAATAGCCC 57.016 40.909 0.00 0.00 0.00 5.19
76 77 5.652014 TCAAATAGCCCACAACCTTATTCTG 59.348 40.000 0.00 0.00 0.00 3.02
100 101 7.038048 TGACATTGTGCTTACAAAAACATTGA 58.962 30.769 0.00 0.00 32.94 2.57
156 157 4.929808 CGACTAACCTGTGTTTGATAAGCT 59.070 41.667 0.00 0.00 35.87 3.74
177 178 1.195115 ACGCAATGCTTCTCCTCCTA 58.805 50.000 2.94 0.00 0.00 2.94
187 188 3.262151 GCTTCTCCTCCTACCTTTGAGTT 59.738 47.826 0.00 0.00 0.00 3.01
193 194 3.594134 CTCCTACCTTTGAGTTGCTCTG 58.406 50.000 0.00 0.00 0.00 3.35
198 199 2.972713 ACCTTTGAGTTGCTCTGGACTA 59.027 45.455 9.12 0.00 0.00 2.59
201 202 4.564406 CCTTTGAGTTGCTCTGGACTATGT 60.564 45.833 0.00 0.00 0.00 2.29
202 203 3.599730 TGAGTTGCTCTGGACTATGTG 57.400 47.619 0.00 0.00 0.00 3.21
204 205 4.086457 TGAGTTGCTCTGGACTATGTGTA 58.914 43.478 0.00 0.00 0.00 2.90
209 210 4.682787 TGCTCTGGACTATGTGTAATTCG 58.317 43.478 0.00 0.00 0.00 3.34
229 230 3.100817 CGCAACAAATAGCTTCAATCCG 58.899 45.455 0.00 0.00 0.00 4.18
240 241 3.192844 AGCTTCAATCCGTTCTCGTCTAA 59.807 43.478 0.00 0.00 35.01 2.10
269 270 2.757894 TTTTTGCAGGGGGTCTACAA 57.242 45.000 0.00 0.00 0.00 2.41
270 271 1.989706 TTTTGCAGGGGGTCTACAAC 58.010 50.000 0.00 0.00 29.06 3.32
271 272 0.250553 TTTGCAGGGGGTCTACAACG 60.251 55.000 0.00 0.00 29.06 4.10
272 273 1.122632 TTGCAGGGGGTCTACAACGA 61.123 55.000 0.00 0.00 0.00 3.85
273 274 0.907704 TGCAGGGGGTCTACAACGAT 60.908 55.000 0.00 0.00 0.00 3.73
274 275 0.462047 GCAGGGGGTCTACAACGATG 60.462 60.000 0.00 0.00 0.00 3.84
284 285 5.873164 GGGTCTACAACGATGTTACTTCAAT 59.127 40.000 2.83 0.00 41.05 2.57
321 322 7.757624 AGAAAGTATTCTAAGAAGAGAAGCACG 59.242 37.037 0.00 0.00 44.11 5.34
322 323 5.897050 AGTATTCTAAGAAGAGAAGCACGG 58.103 41.667 0.00 0.00 38.80 4.94
330 331 3.069729 AGAAGAGAAGCACGGTGTACTTT 59.930 43.478 10.24 0.00 0.00 2.66
333 334 3.825014 AGAGAAGCACGGTGTACTTTAGA 59.175 43.478 10.24 0.00 0.00 2.10
346 347 7.148787 CGGTGTACTTTAGAAGAACAATGAGAC 60.149 40.741 0.00 0.00 0.00 3.36
362 363 7.555087 ACAATGAGACAGAAGAATAGAAGGAG 58.445 38.462 0.00 0.00 0.00 3.69
371 372 7.821846 ACAGAAGAATAGAAGGAGCACTTTAAG 59.178 37.037 0.00 0.00 40.21 1.85
383 384 6.660949 AGGAGCACTTTAAGCACAAGAATAAT 59.339 34.615 0.00 0.00 0.00 1.28
386 387 7.308435 AGCACTTTAAGCACAAGAATAATGTC 58.692 34.615 0.00 0.00 0.00 3.06
503 3233 9.783081 AATGTGAATACAGATATATGTGAAGCA 57.217 29.630 16.26 6.23 40.79 3.91
534 3264 6.561533 CGCTCGCGAATACACTAAATAAACAT 60.562 38.462 11.33 0.00 42.83 2.71
558 3288 4.433283 CCAAATTTTTGAATCTTCGCGCAG 60.433 41.667 8.75 0.00 40.55 5.18
563 3293 0.100503 TGAATCTTCGCGCAGATCGA 59.899 50.000 21.28 8.47 41.67 3.59
565 3295 1.202973 AATCTTCGCGCAGATCGACG 61.203 55.000 21.28 6.11 41.67 5.12
611 3343 5.824904 TTTGCATGCTCTAAATCCTCTTC 57.175 39.130 20.33 0.00 0.00 2.87
614 3346 3.397482 CATGCTCTAAATCCTCTTCCCG 58.603 50.000 0.00 0.00 0.00 5.14
621 3353 6.062258 TCTAAATCCTCTTCCCGAAACATT 57.938 37.500 0.00 0.00 0.00 2.71
637 3369 7.318141 CCGAAACATTTTAGTAGGTCTGACTA 58.682 38.462 7.85 0.00 0.00 2.59
646 3378 9.650714 TTTTAGTAGGTCTGACTAAGGCATATA 57.349 33.333 7.85 0.00 39.80 0.86
647 3379 9.824216 TTTAGTAGGTCTGACTAAGGCATATAT 57.176 33.333 7.85 0.00 39.80 0.86
650 3382 8.837737 AGTAGGTCTGACTAAGGCATATATAGA 58.162 37.037 7.85 0.00 27.98 1.98
672 3404 2.362169 ACCAAACGTGCCATAATTGC 57.638 45.000 0.00 0.00 0.00 3.56
710 3443 5.063204 TGAACTTCAGTGAATCGGTTCAAT 58.937 37.500 25.30 9.55 45.38 2.57
711 3444 6.227522 TGAACTTCAGTGAATCGGTTCAATA 58.772 36.000 25.30 11.33 45.38 1.90
760 3493 3.833650 TCAACACAATTCATTCCAGGCAT 59.166 39.130 0.00 0.00 0.00 4.40
761 3494 4.082081 TCAACACAATTCATTCCAGGCATC 60.082 41.667 0.00 0.00 0.00 3.91
765 3498 0.464373 ATTCATTCCAGGCATCGCGT 60.464 50.000 5.77 0.00 0.00 6.01
782 3515 0.108329 CGTTCGTATGAGGCCCTGTT 60.108 55.000 0.00 0.00 0.00 3.16
784 3517 1.066430 GTTCGTATGAGGCCCTGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
788 3521 3.452990 TCGTATGAGGCCCTGTTCAAATA 59.547 43.478 0.00 0.00 0.00 1.40
794 3527 4.263905 TGAGGCCCTGTTCAAATACAAGAT 60.264 41.667 0.00 0.00 0.00 2.40
803 3536 7.280876 CCTGTTCAAATACAAGATGCTTAGCTA 59.719 37.037 5.60 0.00 0.00 3.32
812 3545 6.173339 ACAAGATGCTTAGCTAAAGTGCTTA 58.827 36.000 14.95 0.00 43.74 3.09
813 3546 6.314896 ACAAGATGCTTAGCTAAAGTGCTTAG 59.685 38.462 14.95 10.04 43.74 2.18
815 3548 6.279882 AGATGCTTAGCTAAAGTGCTTAGAG 58.720 40.000 14.95 0.00 40.79 2.43
860 3593 9.330063 TCAAACACAGATGCTTATTTATAGAGG 57.670 33.333 0.00 0.00 0.00 3.69
861 3594 9.330063 CAAACACAGATGCTTATTTATAGAGGA 57.670 33.333 0.00 0.00 0.00 3.71
862 3595 8.894768 AACACAGATGCTTATTTATAGAGGAC 57.105 34.615 0.00 0.00 0.00 3.85
864 3597 8.147058 ACACAGATGCTTATTTATAGAGGACAG 58.853 37.037 0.00 0.00 0.00 3.51
868 3601 9.099071 AGATGCTTATTTATAGAGGACAGACAT 57.901 33.333 0.00 0.00 0.00 3.06
927 3661 3.972971 CTGACTCTGCCAGCCTGCC 62.973 68.421 0.00 0.00 0.00 4.85
928 3662 3.715097 GACTCTGCCAGCCTGCCT 61.715 66.667 0.00 0.00 0.00 4.75
929 3663 3.972971 GACTCTGCCAGCCTGCCTG 62.973 68.421 0.00 0.00 41.41 4.85
1059 3793 0.389426 CGTCGGAAACCCATCGTTCT 60.389 55.000 0.00 0.00 31.78 3.01
1224 3961 1.988293 CCTCTTCTATCTCCTCCGCA 58.012 55.000 0.00 0.00 0.00 5.69
1409 4146 4.016706 CGCGTCCAGGGGTTCCTT 62.017 66.667 0.00 0.00 42.67 3.36
1428 4165 1.285280 TGGATTTGTGACGGGGATCT 58.715 50.000 0.00 0.00 0.00 2.75
1587 4324 4.497291 TGGGTGGTACTTATTGCTTAGG 57.503 45.455 0.00 0.00 0.00 2.69
1588 4325 3.211865 GGGTGGTACTTATTGCTTAGGC 58.788 50.000 0.00 0.00 39.26 3.93
1589 4326 3.211865 GGTGGTACTTATTGCTTAGGCC 58.788 50.000 0.00 0.00 37.74 5.19
1590 4327 3.211865 GTGGTACTTATTGCTTAGGCCC 58.788 50.000 0.00 0.00 37.74 5.80
1592 4329 3.118038 TGGTACTTATTGCTTAGGCCCTG 60.118 47.826 0.00 0.00 37.74 4.45
1593 4330 3.118000 GGTACTTATTGCTTAGGCCCTGT 60.118 47.826 0.00 0.00 37.74 4.00
1594 4331 3.739401 ACTTATTGCTTAGGCCCTGTT 57.261 42.857 0.00 0.00 37.74 3.16
1595 4332 4.047627 ACTTATTGCTTAGGCCCTGTTT 57.952 40.909 0.00 0.00 37.74 2.83
1596 4333 3.763897 ACTTATTGCTTAGGCCCTGTTTG 59.236 43.478 0.00 0.00 37.74 2.93
1598 4335 0.480690 TTGCTTAGGCCCTGTTTGGA 59.519 50.000 0.00 0.00 37.74 3.53
1600 4337 1.340991 TGCTTAGGCCCTGTTTGGATC 60.341 52.381 0.00 0.00 37.74 3.36
1601 4338 1.340991 GCTTAGGCCCTGTTTGGATCA 60.341 52.381 0.00 0.00 38.35 2.92
1602 4339 2.648059 CTTAGGCCCTGTTTGGATCAG 58.352 52.381 0.00 0.00 38.35 2.90
1603 4340 0.255890 TAGGCCCTGTTTGGATCAGC 59.744 55.000 0.00 0.00 38.35 4.26
1604 4341 2.409870 GGCCCTGTTTGGATCAGCG 61.410 63.158 0.00 0.00 38.35 5.18
1605 4342 1.675641 GCCCTGTTTGGATCAGCGT 60.676 57.895 0.00 0.00 38.35 5.07
1606 4343 1.244019 GCCCTGTTTGGATCAGCGTT 61.244 55.000 0.00 0.00 38.35 4.84
1608 4345 1.200020 CCCTGTTTGGATCAGCGTTTC 59.800 52.381 0.00 0.00 38.35 2.78
1609 4346 1.200020 CCTGTTTGGATCAGCGTTTCC 59.800 52.381 0.00 0.00 38.35 3.13
1612 4349 1.265905 GTTTGGATCAGCGTTTCCGTT 59.734 47.619 0.00 0.00 34.58 4.44
1613 4350 1.153353 TTGGATCAGCGTTTCCGTTC 58.847 50.000 0.00 0.00 34.58 3.95
1614 4351 0.320374 TGGATCAGCGTTTCCGTTCT 59.680 50.000 0.00 0.00 34.58 3.01
1615 4352 1.546923 TGGATCAGCGTTTCCGTTCTA 59.453 47.619 0.00 0.00 34.58 2.10
1617 4354 2.997986 GGATCAGCGTTTCCGTTCTAAA 59.002 45.455 0.00 0.00 36.15 1.85
1619 4356 4.807304 GGATCAGCGTTTCCGTTCTAAATA 59.193 41.667 0.00 0.00 36.15 1.40
1620 4357 5.276726 GGATCAGCGTTTCCGTTCTAAATAC 60.277 44.000 0.00 0.00 36.15 1.89
1623 4360 5.290158 TCAGCGTTTCCGTTCTAAATACATC 59.710 40.000 0.00 0.00 36.15 3.06
1624 4361 4.569564 AGCGTTTCCGTTCTAAATACATCC 59.430 41.667 0.00 0.00 36.15 3.51
1625 4362 4.549489 GCGTTTCCGTTCTAAATACATCCG 60.549 45.833 0.00 0.00 36.15 4.18
1628 4365 6.253298 CGTTTCCGTTCTAAATACATCCGTAA 59.747 38.462 0.00 0.00 0.00 3.18
1629 4366 7.201427 CGTTTCCGTTCTAAATACATCCGTAAA 60.201 37.037 0.00 0.00 0.00 2.01
1630 4367 8.442384 GTTTCCGTTCTAAATACATCCGTAAAA 58.558 33.333 0.00 0.00 0.00 1.52
1631 4368 8.721019 TTCCGTTCTAAATACATCCGTAAAAT 57.279 30.769 0.00 0.00 0.00 1.82
1632 4369 9.814899 TTCCGTTCTAAATACATCCGTAAAATA 57.185 29.630 0.00 0.00 0.00 1.40
1633 4370 9.985730 TCCGTTCTAAATACATCCGTAAAATAT 57.014 29.630 0.00 0.00 0.00 1.28
1640 4377 7.916914 AATACATCCGTAAAATATACAGGCC 57.083 36.000 0.00 0.00 0.00 5.19
1641 4378 5.562298 ACATCCGTAAAATATACAGGCCT 57.438 39.130 0.00 0.00 0.00 5.19
1642 4379 5.548406 ACATCCGTAAAATATACAGGCCTC 58.452 41.667 0.00 0.00 0.00 4.70
1645 4382 3.243975 CCGTAAAATATACAGGCCTCGGT 60.244 47.826 0.00 0.26 0.00 4.69
1652 4389 3.374402 CAGGCCTCGGTCTGTCGT 61.374 66.667 0.00 0.00 42.37 4.34
1653 4390 2.600769 AGGCCTCGGTCTGTCGTT 60.601 61.111 0.00 0.00 0.00 3.85
1654 4391 2.207924 AGGCCTCGGTCTGTCGTTT 61.208 57.895 0.00 0.00 0.00 3.60
1655 4392 1.737008 GGCCTCGGTCTGTCGTTTC 60.737 63.158 0.00 0.00 0.00 2.78
1656 4393 1.006571 GCCTCGGTCTGTCGTTTCA 60.007 57.895 0.00 0.00 0.00 2.69
1657 4394 0.389948 GCCTCGGTCTGTCGTTTCAT 60.390 55.000 0.00 0.00 0.00 2.57
1658 4395 1.939838 GCCTCGGTCTGTCGTTTCATT 60.940 52.381 0.00 0.00 0.00 2.57
1659 4396 2.413837 CCTCGGTCTGTCGTTTCATTT 58.586 47.619 0.00 0.00 0.00 2.32
1660 4397 2.412089 CCTCGGTCTGTCGTTTCATTTC 59.588 50.000 0.00 0.00 0.00 2.17
1661 4398 2.409975 TCGGTCTGTCGTTTCATTTCC 58.590 47.619 0.00 0.00 0.00 3.13
1662 4399 1.126113 CGGTCTGTCGTTTCATTTCCG 59.874 52.381 0.00 0.00 0.00 4.30
1663 4400 1.136057 GGTCTGTCGTTTCATTTCCGC 60.136 52.381 0.00 0.00 0.00 5.54
1664 4401 0.787787 TCTGTCGTTTCATTTCCGCG 59.212 50.000 0.00 0.00 0.00 6.46
1665 4402 0.511221 CTGTCGTTTCATTTCCGCGT 59.489 50.000 4.92 0.00 0.00 6.01
1666 4403 0.233590 TGTCGTTTCATTTCCGCGTG 59.766 50.000 4.92 0.00 0.00 5.34
1667 4404 0.233848 GTCGTTTCATTTCCGCGTGT 59.766 50.000 4.92 0.00 0.00 4.49
1668 4405 1.456544 GTCGTTTCATTTCCGCGTGTA 59.543 47.619 4.92 0.00 0.00 2.90
1669 4406 2.096811 GTCGTTTCATTTCCGCGTGTAA 60.097 45.455 4.92 0.00 0.00 2.41
1670 4407 2.543012 TCGTTTCATTTCCGCGTGTAAA 59.457 40.909 4.92 2.97 0.00 2.01
1671 4408 3.186817 TCGTTTCATTTCCGCGTGTAAAT 59.813 39.130 4.92 5.43 0.00 1.40
1672 4409 3.909574 CGTTTCATTTCCGCGTGTAAATT 59.090 39.130 4.92 0.00 0.00 1.82
1673 4410 4.201353 CGTTTCATTTCCGCGTGTAAATTG 60.201 41.667 4.92 1.35 0.00 2.32
1674 4411 2.857618 TCATTTCCGCGTGTAAATTGC 58.142 42.857 4.92 0.00 0.00 3.56
1675 4412 2.486203 TCATTTCCGCGTGTAAATTGCT 59.514 40.909 4.92 0.00 0.00 3.91
1676 4413 2.604969 TTTCCGCGTGTAAATTGCTC 57.395 45.000 4.92 0.00 0.00 4.26
1677 4414 1.514003 TTCCGCGTGTAAATTGCTCA 58.486 45.000 4.92 0.00 0.00 4.26
1678 4415 1.732941 TCCGCGTGTAAATTGCTCAT 58.267 45.000 4.92 0.00 0.00 2.90
1679 4416 1.663643 TCCGCGTGTAAATTGCTCATC 59.336 47.619 4.92 0.00 0.00 2.92
1680 4417 1.396648 CCGCGTGTAAATTGCTCATCA 59.603 47.619 4.92 0.00 0.00 3.07
1681 4418 2.537529 CCGCGTGTAAATTGCTCATCAG 60.538 50.000 4.92 0.00 0.00 2.90
1682 4419 2.094258 CGCGTGTAAATTGCTCATCAGT 59.906 45.455 0.00 0.00 0.00 3.41
1683 4420 3.674423 GCGTGTAAATTGCTCATCAGTC 58.326 45.455 0.00 0.00 0.00 3.51
1684 4421 3.782250 GCGTGTAAATTGCTCATCAGTCG 60.782 47.826 0.00 0.00 0.00 4.18
1685 4422 3.242091 CGTGTAAATTGCTCATCAGTCGG 60.242 47.826 0.00 0.00 0.00 4.79
1686 4423 3.684788 GTGTAAATTGCTCATCAGTCGGT 59.315 43.478 0.00 0.00 0.00 4.69
1687 4424 4.868171 GTGTAAATTGCTCATCAGTCGGTA 59.132 41.667 0.00 0.00 0.00 4.02
1688 4425 5.350365 GTGTAAATTGCTCATCAGTCGGTAA 59.650 40.000 0.00 0.00 0.00 2.85
1689 4426 5.580691 TGTAAATTGCTCATCAGTCGGTAAG 59.419 40.000 0.00 0.00 0.00 2.34
1690 4427 3.895232 ATTGCTCATCAGTCGGTAAGT 57.105 42.857 0.00 0.00 0.00 2.24
1691 4428 3.678056 TTGCTCATCAGTCGGTAAGTT 57.322 42.857 0.00 0.00 0.00 2.66
1692 4429 4.794278 TTGCTCATCAGTCGGTAAGTTA 57.206 40.909 0.00 0.00 0.00 2.24
1693 4430 4.106029 TGCTCATCAGTCGGTAAGTTAC 57.894 45.455 4.32 4.32 0.00 2.50
1694 4431 3.508402 TGCTCATCAGTCGGTAAGTTACA 59.492 43.478 14.81 0.00 0.00 2.41
1695 4432 3.858238 GCTCATCAGTCGGTAAGTTACAC 59.142 47.826 14.81 5.50 0.00 2.90
1696 4433 4.087510 TCATCAGTCGGTAAGTTACACG 57.912 45.455 14.81 14.45 0.00 4.49
1697 4434 3.503363 TCATCAGTCGGTAAGTTACACGT 59.497 43.478 14.81 0.00 0.00 4.49
1698 4435 3.272439 TCAGTCGGTAAGTTACACGTG 57.728 47.619 15.48 15.48 0.00 4.49
1699 4436 2.618241 TCAGTCGGTAAGTTACACGTGT 59.382 45.455 26.52 26.52 0.00 4.49
1700 4437 3.812609 TCAGTCGGTAAGTTACACGTGTA 59.187 43.478 24.10 24.10 0.00 2.90
1701 4438 4.274705 TCAGTCGGTAAGTTACACGTGTAA 59.725 41.667 31.86 31.86 38.10 2.41
1702 4439 4.975502 CAGTCGGTAAGTTACACGTGTAAA 59.024 41.667 35.66 21.77 41.58 2.01
1703 4440 4.976116 AGTCGGTAAGTTACACGTGTAAAC 59.024 41.667 35.66 29.26 41.58 2.01
1704 4441 4.737765 GTCGGTAAGTTACACGTGTAAACA 59.262 41.667 35.66 22.89 41.58 2.83
1705 4442 5.231147 GTCGGTAAGTTACACGTGTAAACAA 59.769 40.000 35.66 22.85 41.58 2.83
1706 4443 5.807520 TCGGTAAGTTACACGTGTAAACAAA 59.192 36.000 35.66 21.33 41.58 2.83
1707 4444 6.311445 TCGGTAAGTTACACGTGTAAACAAAA 59.689 34.615 35.66 17.61 41.58 2.44
1708 4445 6.407753 CGGTAAGTTACACGTGTAAACAAAAC 59.592 38.462 35.66 26.39 41.58 2.43
1709 4446 7.239972 GGTAAGTTACACGTGTAAACAAAACA 58.760 34.615 35.66 14.55 41.58 2.83
1710 4447 7.426169 GGTAAGTTACACGTGTAAACAAAACAG 59.574 37.037 35.66 0.78 41.58 3.16
1711 4448 5.326292 AGTTACACGTGTAAACAAAACAGC 58.674 37.500 35.66 22.19 41.58 4.40
1712 4449 3.139603 ACACGTGTAAACAAAACAGCC 57.860 42.857 21.98 0.00 0.00 4.85
1713 4450 2.159352 ACACGTGTAAACAAAACAGCCC 60.159 45.455 21.98 0.00 0.00 5.19
1714 4451 1.406180 ACGTGTAAACAAAACAGCCCC 59.594 47.619 0.00 0.00 0.00 5.80
1715 4452 1.598430 CGTGTAAACAAAACAGCCCCG 60.598 52.381 0.00 0.00 0.00 5.73
1716 4453 1.406180 GTGTAAACAAAACAGCCCCGT 59.594 47.619 0.00 0.00 0.00 5.28
1717 4454 2.617774 GTGTAAACAAAACAGCCCCGTA 59.382 45.455 0.00 0.00 0.00 4.02
1718 4455 3.253921 GTGTAAACAAAACAGCCCCGTAT 59.746 43.478 0.00 0.00 0.00 3.06
1719 4456 3.890147 TGTAAACAAAACAGCCCCGTATT 59.110 39.130 0.00 0.00 0.00 1.89
1720 4457 5.048852 GTGTAAACAAAACAGCCCCGTATTA 60.049 40.000 0.00 0.00 0.00 0.98
1721 4458 5.711036 TGTAAACAAAACAGCCCCGTATTAT 59.289 36.000 0.00 0.00 0.00 1.28
1722 4459 5.731957 AAACAAAACAGCCCCGTATTATT 57.268 34.783 0.00 0.00 0.00 1.40
1723 4460 5.731957 AACAAAACAGCCCCGTATTATTT 57.268 34.783 0.00 0.00 0.00 1.40
1724 4461 5.731957 ACAAAACAGCCCCGTATTATTTT 57.268 34.783 0.00 0.00 0.00 1.82
1725 4462 6.837471 ACAAAACAGCCCCGTATTATTTTA 57.163 33.333 0.00 0.00 0.00 1.52
1726 4463 6.623486 ACAAAACAGCCCCGTATTATTTTAC 58.377 36.000 0.00 0.00 0.00 2.01
1727 4464 6.208994 ACAAAACAGCCCCGTATTATTTTACA 59.791 34.615 0.00 0.00 0.00 2.41
1728 4465 7.093684 ACAAAACAGCCCCGTATTATTTTACAT 60.094 33.333 0.00 0.00 0.00 2.29
1729 4466 6.628919 AACAGCCCCGTATTATTTTACATC 57.371 37.500 0.00 0.00 0.00 3.06
1730 4467 5.067954 ACAGCCCCGTATTATTTTACATCC 58.932 41.667 0.00 0.00 0.00 3.51
1731 4468 5.067273 CAGCCCCGTATTATTTTACATCCA 58.933 41.667 0.00 0.00 0.00 3.41
1732 4469 5.533154 CAGCCCCGTATTATTTTACATCCAA 59.467 40.000 0.00 0.00 0.00 3.53
1733 4470 6.208599 CAGCCCCGTATTATTTTACATCCAAT 59.791 38.462 0.00 0.00 0.00 3.16
1734 4471 6.433093 AGCCCCGTATTATTTTACATCCAATC 59.567 38.462 0.00 0.00 0.00 2.67
1735 4472 6.349860 GCCCCGTATTATTTTACATCCAATCC 60.350 42.308 0.00 0.00 0.00 3.01
1736 4473 6.717540 CCCCGTATTATTTTACATCCAATCCA 59.282 38.462 0.00 0.00 0.00 3.41
1737 4474 7.231722 CCCCGTATTATTTTACATCCAATCCAA 59.768 37.037 0.00 0.00 0.00 3.53
1738 4475 8.296713 CCCGTATTATTTTACATCCAATCCAAG 58.703 37.037 0.00 0.00 0.00 3.61
1739 4476 7.807907 CCGTATTATTTTACATCCAATCCAAGC 59.192 37.037 0.00 0.00 0.00 4.01
1740 4477 7.533900 CGTATTATTTTACATCCAATCCAAGCG 59.466 37.037 0.00 0.00 0.00 4.68
1741 4478 3.502191 TTTTACATCCAATCCAAGCGC 57.498 42.857 0.00 0.00 0.00 5.92
1742 4479 1.013596 TTACATCCAATCCAAGCGCG 58.986 50.000 0.00 0.00 0.00 6.86
1743 4480 1.436195 TACATCCAATCCAAGCGCGC 61.436 55.000 26.66 26.66 0.00 6.86
1744 4481 3.211963 ATCCAATCCAAGCGCGCC 61.212 61.111 30.33 10.31 0.00 6.53
1747 4484 3.443045 CAATCCAAGCGCGCCCTT 61.443 61.111 30.33 14.51 0.00 3.95
1748 4485 2.112198 CAATCCAAGCGCGCCCTTA 61.112 57.895 30.33 12.27 0.00 2.69
1749 4486 1.819632 AATCCAAGCGCGCCCTTAG 60.820 57.895 30.33 10.05 0.00 2.18
1750 4487 3.757248 ATCCAAGCGCGCCCTTAGG 62.757 63.158 30.33 21.69 0.00 2.69
1751 4488 4.778143 CCAAGCGCGCCCTTAGGT 62.778 66.667 30.33 3.60 34.57 3.08
1753 4490 4.016706 AAGCGCGCCCTTAGGTGT 62.017 61.111 30.33 1.73 46.14 4.16
1754 4491 3.546714 AAGCGCGCCCTTAGGTGTT 62.547 57.895 30.33 9.30 46.14 3.32
2526 5267 9.587772 CTTACATCATGTTTAGTACTTAGTGCT 57.412 33.333 8.22 8.22 32.46 4.40
2540 5281 4.997395 ACTTAGTGCTTGTTGGTCTGTATG 59.003 41.667 0.00 0.00 0.00 2.39
2792 5533 8.512138 CCCTCGAAGTAAGTTTATGTTCAAAAT 58.488 33.333 0.00 0.00 0.00 1.82
2949 5690 6.333416 TCAGTATATGTCTGACAAGAGCAAC 58.667 40.000 15.31 7.59 37.07 4.17
3068 5810 1.952621 TTCTTCCAGGAAGGTCGGAT 58.047 50.000 26.42 0.00 39.82 4.18
3260 6002 4.214545 CGTAAGGTGGCAAATAAGTGTCAA 59.785 41.667 0.00 0.00 34.24 3.18
3295 6037 8.498054 TGTTTCAATGCTCCATTTTACAAAAA 57.502 26.923 0.00 0.00 31.05 1.94
3963 7033 1.005289 AGGGTGGGCTCCAGATGAT 59.995 57.895 0.00 0.00 32.34 2.45
3972 7042 3.139850 GGCTCCAGATGATGAATCACTG 58.860 50.000 12.27 12.27 40.03 3.66
4014 7084 9.669353 CATAACAAATTAATATGGTCTGCTGTC 57.331 33.333 0.00 0.00 0.00 3.51
4019 7089 9.276590 CAAATTAATATGGTCTGCTGTCATCTA 57.723 33.333 0.00 0.00 0.00 1.98
4079 7149 8.191446 TGTGGAAAATGAAGAACAATTTCGTTA 58.809 29.630 0.00 0.00 44.59 3.18
4080 7150 9.026074 GTGGAAAATGAAGAACAATTTCGTTAA 57.974 29.630 0.00 0.00 44.59 2.01
4086 7156 8.955061 ATGAAGAACAATTTCGTTAACTCATG 57.045 30.769 3.71 0.00 36.78 3.07
4154 7224 2.498167 CAGTTGGGAGAACTGTCCTTG 58.502 52.381 6.42 0.00 41.90 3.61
4155 7225 1.202818 AGTTGGGAGAACTGTCCTTGC 60.203 52.381 0.00 0.00 36.75 4.01
4156 7226 0.250295 TTGGGAGAACTGTCCTTGCG 60.250 55.000 0.00 0.00 36.75 4.85
4157 7227 2.035442 GGGAGAACTGTCCTTGCGC 61.035 63.158 0.00 0.00 36.75 6.09
4158 7228 2.383527 GGAGAACTGTCCTTGCGCG 61.384 63.158 0.00 0.00 33.30 6.86
4159 7229 2.357517 AGAACTGTCCTTGCGCGG 60.358 61.111 8.83 0.00 0.00 6.46
4160 7230 3.423154 GAACTGTCCTTGCGCGGG 61.423 66.667 8.83 12.26 0.00 6.13
4161 7231 4.250305 AACTGTCCTTGCGCGGGT 62.250 61.111 8.83 0.00 0.00 5.28
4162 7232 2.775032 GAACTGTCCTTGCGCGGGTA 62.775 60.000 8.83 0.00 0.00 3.69
4163 7233 2.509336 CTGTCCTTGCGCGGGTAG 60.509 66.667 8.83 12.97 0.00 3.18
4164 7234 4.077184 TGTCCTTGCGCGGGTAGG 62.077 66.667 8.83 13.59 0.00 3.18
4165 7235 4.832608 GTCCTTGCGCGGGTAGGG 62.833 72.222 12.26 12.26 0.00 3.53
4172 7242 2.267961 CGCGGGTAGGGCTTTTCT 59.732 61.111 0.00 0.00 0.00 2.52
4173 7243 1.376812 CGCGGGTAGGGCTTTTCTT 60.377 57.895 0.00 0.00 0.00 2.52
4174 7244 0.958876 CGCGGGTAGGGCTTTTCTTT 60.959 55.000 0.00 0.00 0.00 2.52
4175 7245 0.809385 GCGGGTAGGGCTTTTCTTTC 59.191 55.000 0.00 0.00 0.00 2.62
4176 7246 1.613520 GCGGGTAGGGCTTTTCTTTCT 60.614 52.381 0.00 0.00 0.00 2.52
4177 7247 2.791655 CGGGTAGGGCTTTTCTTTCTT 58.208 47.619 0.00 0.00 0.00 2.52
4178 7248 3.154710 CGGGTAGGGCTTTTCTTTCTTT 58.845 45.455 0.00 0.00 0.00 2.52
4179 7249 3.572682 CGGGTAGGGCTTTTCTTTCTTTT 59.427 43.478 0.00 0.00 0.00 2.27
4180 7250 4.558697 CGGGTAGGGCTTTTCTTTCTTTTG 60.559 45.833 0.00 0.00 0.00 2.44
4181 7251 4.344102 GGGTAGGGCTTTTCTTTCTTTTGT 59.656 41.667 0.00 0.00 0.00 2.83
4182 7252 5.163343 GGGTAGGGCTTTTCTTTCTTTTGTT 60.163 40.000 0.00 0.00 0.00 2.83
4183 7253 6.346096 GGTAGGGCTTTTCTTTCTTTTGTTT 58.654 36.000 0.00 0.00 0.00 2.83
4184 7254 7.418139 GGGTAGGGCTTTTCTTTCTTTTGTTTA 60.418 37.037 0.00 0.00 0.00 2.01
4185 7255 7.652105 GGTAGGGCTTTTCTTTCTTTTGTTTAG 59.348 37.037 0.00 0.00 0.00 1.85
4186 7256 6.582636 AGGGCTTTTCTTTCTTTTGTTTAGG 58.417 36.000 0.00 0.00 0.00 2.69
4187 7257 6.382859 AGGGCTTTTCTTTCTTTTGTTTAGGA 59.617 34.615 0.00 0.00 0.00 2.94
4188 7258 7.071196 AGGGCTTTTCTTTCTTTTGTTTAGGAT 59.929 33.333 0.00 0.00 0.00 3.24
4189 7259 7.171508 GGGCTTTTCTTTCTTTTGTTTAGGATG 59.828 37.037 0.00 0.00 0.00 3.51
4190 7260 7.171508 GGCTTTTCTTTCTTTTGTTTAGGATGG 59.828 37.037 0.00 0.00 0.00 3.51
4191 7261 7.171508 GCTTTTCTTTCTTTTGTTTAGGATGGG 59.828 37.037 0.00 0.00 0.00 4.00
4192 7262 5.722021 TCTTTCTTTTGTTTAGGATGGGC 57.278 39.130 0.00 0.00 0.00 5.36
4193 7263 5.144100 TCTTTCTTTTGTTTAGGATGGGCA 58.856 37.500 0.00 0.00 0.00 5.36
4194 7264 5.600484 TCTTTCTTTTGTTTAGGATGGGCAA 59.400 36.000 0.00 0.00 0.00 4.52
4195 7265 5.467035 TTCTTTTGTTTAGGATGGGCAAG 57.533 39.130 0.00 0.00 0.00 4.01
4196 7266 4.735369 TCTTTTGTTTAGGATGGGCAAGA 58.265 39.130 0.00 0.00 0.00 3.02
4197 7267 4.766891 TCTTTTGTTTAGGATGGGCAAGAG 59.233 41.667 0.00 0.00 0.00 2.85
4198 7268 2.806945 TGTTTAGGATGGGCAAGAGG 57.193 50.000 0.00 0.00 0.00 3.69
4199 7269 2.274542 TGTTTAGGATGGGCAAGAGGA 58.725 47.619 0.00 0.00 0.00 3.71
4200 7270 2.852449 TGTTTAGGATGGGCAAGAGGAT 59.148 45.455 0.00 0.00 0.00 3.24
4201 7271 3.217626 GTTTAGGATGGGCAAGAGGATG 58.782 50.000 0.00 0.00 0.00 3.51
4202 7272 1.438469 TAGGATGGGCAAGAGGATGG 58.562 55.000 0.00 0.00 0.00 3.51
4203 7273 1.530183 GGATGGGCAAGAGGATGGC 60.530 63.158 0.00 0.00 44.56 4.40
4204 7274 1.535685 GATGGGCAAGAGGATGGCT 59.464 57.895 0.86 0.00 44.67 4.75
4205 7275 0.822532 GATGGGCAAGAGGATGGCTG 60.823 60.000 0.86 0.00 44.67 4.85
4206 7276 2.832201 GGGCAAGAGGATGGCTGC 60.832 66.667 0.00 0.00 44.67 5.25
4207 7277 2.832201 GGCAAGAGGATGGCTGCC 60.832 66.667 12.87 12.87 42.22 4.85
4208 7278 2.274760 GCAAGAGGATGGCTGCCT 59.725 61.111 21.03 5.22 38.81 4.75
4212 7282 4.925861 GAGGATGGCTGCCTCGGC 62.926 72.222 21.03 0.00 42.22 5.54
4214 7284 4.496336 GGATGGCTGCCTCGGCTT 62.496 66.667 21.03 0.00 42.51 4.35
4215 7285 2.899339 GATGGCTGCCTCGGCTTC 60.899 66.667 21.03 3.70 42.51 3.86
4216 7286 3.687321 GATGGCTGCCTCGGCTTCA 62.687 63.158 21.03 5.36 42.51 3.02
4217 7287 3.272364 ATGGCTGCCTCGGCTTCAA 62.272 57.895 21.03 0.00 42.51 2.69
4218 7288 2.672996 GGCTGCCTCGGCTTCAAA 60.673 61.111 12.43 0.00 42.51 2.69
4219 7289 2.694760 GGCTGCCTCGGCTTCAAAG 61.695 63.158 12.43 0.00 42.51 2.77
4234 7304 4.645956 CTTCAAAGCTGTTAGAGAATGCG 58.354 43.478 0.00 0.00 0.00 4.73
4235 7305 2.416547 TCAAAGCTGTTAGAGAATGCGC 59.583 45.455 0.00 0.00 0.00 6.09
4236 7306 2.393271 AAGCTGTTAGAGAATGCGCT 57.607 45.000 9.73 0.00 0.00 5.92
4237 7307 1.933247 AGCTGTTAGAGAATGCGCTC 58.067 50.000 9.73 0.00 35.11 5.03
4238 7308 1.480137 AGCTGTTAGAGAATGCGCTCT 59.520 47.619 9.73 3.28 46.47 4.09
4239 7309 2.093764 AGCTGTTAGAGAATGCGCTCTT 60.094 45.455 9.73 1.47 42.41 2.85
4240 7310 3.131223 AGCTGTTAGAGAATGCGCTCTTA 59.869 43.478 9.73 0.00 42.41 2.10
4241 7311 4.054671 GCTGTTAGAGAATGCGCTCTTAT 58.945 43.478 9.73 0.00 42.41 1.73
4242 7312 4.149747 GCTGTTAGAGAATGCGCTCTTATC 59.850 45.833 9.73 9.32 42.41 1.75
4243 7313 5.262588 TGTTAGAGAATGCGCTCTTATCA 57.737 39.130 9.73 0.89 42.41 2.15
4244 7314 5.043903 TGTTAGAGAATGCGCTCTTATCAC 58.956 41.667 9.73 5.38 42.41 3.06
4245 7315 5.163509 TGTTAGAGAATGCGCTCTTATCACT 60.164 40.000 9.73 6.34 42.41 3.41
4246 7316 6.039382 TGTTAGAGAATGCGCTCTTATCACTA 59.961 38.462 9.73 5.40 42.41 2.74
4247 7317 4.865776 AGAGAATGCGCTCTTATCACTAC 58.134 43.478 9.73 0.00 42.41 2.73
4248 7318 4.339530 AGAGAATGCGCTCTTATCACTACA 59.660 41.667 9.73 0.00 42.41 2.74
4249 7319 4.615949 AGAATGCGCTCTTATCACTACAG 58.384 43.478 9.73 0.00 0.00 2.74
4250 7320 2.871182 TGCGCTCTTATCACTACAGG 57.129 50.000 9.73 0.00 0.00 4.00
4251 7321 1.409064 TGCGCTCTTATCACTACAGGG 59.591 52.381 9.73 0.00 0.00 4.45
4252 7322 1.681793 GCGCTCTTATCACTACAGGGA 59.318 52.381 0.00 0.00 0.00 4.20
4253 7323 2.544069 GCGCTCTTATCACTACAGGGAC 60.544 54.545 0.00 0.00 0.00 4.46
4266 7336 0.389817 CAGGGACGCGTCAGATGAAA 60.390 55.000 37.26 0.00 0.00 2.69
4412 7482 5.876460 CAGTCCATGTCATAGACACAAATCA 59.124 40.000 12.99 0.00 45.65 2.57
4584 7655 1.674057 CCTCGGCCATCTCATACCC 59.326 63.158 2.24 0.00 0.00 3.69
4585 7656 1.674057 CTCGGCCATCTCATACCCC 59.326 63.158 2.24 0.00 0.00 4.95
4589 7660 1.280457 GGCCATCTCATACCCCCTAG 58.720 60.000 0.00 0.00 0.00 3.02
4668 7739 3.813529 ACGCTTCATTTTCTTCTTCCG 57.186 42.857 0.00 0.00 0.00 4.30
4669 7740 2.095718 ACGCTTCATTTTCTTCTTCCGC 60.096 45.455 0.00 0.00 0.00 5.54
4724 7796 9.461312 TCCATGGGTGTATTTTATGATAATAGC 57.539 33.333 13.02 0.00 0.00 2.97
4756 7828 5.472137 GGACTTGTGCTTTATGAAACCTACA 59.528 40.000 0.00 0.00 0.00 2.74
4881 7953 9.297586 CAATGTCATCTTGGAATTGTTTCTATG 57.702 33.333 0.00 0.00 32.16 2.23
5059 8137 9.665719 TTAATTCTATGCTCAACTGAATGTGTA 57.334 29.630 0.00 0.00 0.00 2.90
5126 8204 2.838813 GCTAGTTCTCAGGGTTTAGGGT 59.161 50.000 0.00 0.00 0.00 4.34
5190 8268 8.827177 TCATAAGTTTGTGTAACTCTAACCAG 57.173 34.615 0.00 0.00 46.34 4.00
5204 8282 8.788325 AACTCTAACCAGACGCTTATATTTTT 57.212 30.769 0.00 0.00 0.00 1.94
5350 8428 6.869388 GCCTACAATTAGAGACACTATTAGCC 59.131 42.308 0.00 0.00 0.00 3.93
5443 8521 7.182817 AGAGTATCACCAACTTACTATGCAA 57.817 36.000 0.00 0.00 37.82 4.08
5551 8629 3.917760 GGCCTAGGTCGCGCATCT 61.918 66.667 11.31 2.73 0.00 2.90
5566 8644 2.094494 CGCATCTACTCCAGTGACACTT 60.094 50.000 5.04 0.00 0.00 3.16
5573 8651 7.770366 TCTACTCCAGTGACACTTAAACATA 57.230 36.000 5.04 0.00 0.00 2.29
5599 8677 1.074926 ATCTCCGGCCTCCACATCT 60.075 57.895 0.00 0.00 0.00 2.90
5621 8699 0.685097 CCTTCCGGAACCTTGTCTGA 59.315 55.000 14.35 0.00 0.00 3.27
5679 8757 5.441718 TCATCTCAAAGCAAATAGAGGGT 57.558 39.130 0.00 0.00 0.00 4.34
5930 9009 4.699257 GCATTTGTCTCTTCAGTTGAGGAT 59.301 41.667 0.00 0.00 32.78 3.24
6124 9256 5.763355 AGTAGTATCAAGCAGGTACCACTA 58.237 41.667 15.94 7.50 0.00 2.74
6125 9257 5.593502 AGTAGTATCAAGCAGGTACCACTAC 59.406 44.000 19.73 19.73 38.12 2.73
6128 9260 3.170991 TCAAGCAGGTACCACTACTCT 57.829 47.619 15.94 0.00 0.00 3.24
6262 9395 1.026584 CCCCGTTCTTTTGGTTTCGT 58.973 50.000 0.00 0.00 0.00 3.85
6283 9416 0.169672 ATTGAGTCTTGTGCATGCGC 59.830 50.000 24.25 24.25 39.24 6.09
6398 9531 4.584327 AGTTTGGCTTGCGTAAATCTTT 57.416 36.364 0.00 0.00 0.00 2.52
6400 9533 4.744631 AGTTTGGCTTGCGTAAATCTTTTG 59.255 37.500 0.00 0.00 0.00 2.44
6401 9534 3.296322 TGGCTTGCGTAAATCTTTTGG 57.704 42.857 0.00 0.00 0.00 3.28
6468 9601 4.782019 ATTTTCTTGAACGGCAATAGCA 57.218 36.364 0.00 0.00 44.61 3.49
6478 9611 1.004610 CGGCAATAGCAATCTGACGTG 60.005 52.381 0.00 0.00 44.61 4.49
6504 9637 2.695314 GGAGCCATCCTAGCAAACG 58.305 57.895 0.00 0.00 42.94 3.60
6505 9638 0.178068 GGAGCCATCCTAGCAAACGA 59.822 55.000 0.00 0.00 42.94 3.85
6506 9639 1.406887 GGAGCCATCCTAGCAAACGAA 60.407 52.381 0.00 0.00 42.94 3.85
6507 9640 1.666189 GAGCCATCCTAGCAAACGAAC 59.334 52.381 0.00 0.00 0.00 3.95
6508 9641 0.733150 GCCATCCTAGCAAACGAACC 59.267 55.000 0.00 0.00 0.00 3.62
6509 9642 1.379527 CCATCCTAGCAAACGAACCC 58.620 55.000 0.00 0.00 0.00 4.11
6510 9643 1.379527 CATCCTAGCAAACGAACCCC 58.620 55.000 0.00 0.00 0.00 4.95
6551 9684 4.692523 AACCCCTCCAAATCCTATTTGT 57.307 40.909 10.54 0.00 0.00 2.83
6586 9719 3.202706 GAGGCCGATCCGCAAACC 61.203 66.667 8.32 0.00 40.77 3.27
6588 9721 3.202706 GGCCGATCCGCAAACCTC 61.203 66.667 8.32 0.00 0.00 3.85
6589 9722 2.125106 GCCGATCCGCAAACCTCT 60.125 61.111 0.82 0.00 0.00 3.69
6591 9724 1.878522 CCGATCCGCAAACCTCTCG 60.879 63.158 0.00 0.00 0.00 4.04
6605 9738 3.110178 CTCGCAACCGTTCGGACC 61.110 66.667 18.28 4.68 35.54 4.46
6628 9761 1.831580 GAAGCCATCCAAAGCAGTCT 58.168 50.000 0.00 0.00 0.00 3.24
6636 9769 2.972625 TCCAAAGCAGTCTTGTATCGG 58.027 47.619 0.00 0.00 31.78 4.18
6637 9770 1.398390 CCAAAGCAGTCTTGTATCGGC 59.602 52.381 0.00 0.00 31.78 5.54
6640 9773 1.883084 GCAGTCTTGTATCGGCCCG 60.883 63.158 0.00 0.00 0.00 6.13
6643 9776 3.142162 TCTTGTATCGGCCCGCGA 61.142 61.111 8.23 0.00 0.00 5.87
6663 9796 3.259930 CGGTCCGGACGCAATTTT 58.740 55.556 27.68 0.00 0.00 1.82
6666 9799 0.109458 GGTCCGGACGCAATTTTTCC 60.109 55.000 27.68 6.58 0.00 3.13
6668 9801 1.154112 CCGGACGCAATTTTTCCCG 60.154 57.895 0.00 0.00 36.98 5.14
6673 9806 1.455408 GACGCAATTTTTCCCGCAAAG 59.545 47.619 0.00 0.00 0.00 2.77
6674 9807 0.789601 CGCAATTTTTCCCGCAAAGG 59.210 50.000 0.00 0.00 40.63 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.504815 GTTTCTATTACTTTGTCCTCCTTCAAC 58.495 37.037 0.00 0.00 0.00 3.18
33 34 9.262472 CTATTTGATCGGTTTTTCTTTAACTCG 57.738 33.333 0.00 0.00 0.00 4.18
36 37 7.274904 GGGCTATTTGATCGGTTTTTCTTTAAC 59.725 37.037 0.00 0.00 0.00 2.01
48 49 1.676006 GGTTGTGGGCTATTTGATCGG 59.324 52.381 0.00 0.00 0.00 4.18
51 52 6.322201 CAGAATAAGGTTGTGGGCTATTTGAT 59.678 38.462 0.00 0.00 0.00 2.57
62 63 5.048504 AGCACAATGTCAGAATAAGGTTGTG 60.049 40.000 10.09 10.09 44.52 3.33
76 77 7.462109 TCAATGTTTTTGTAAGCACAATGTC 57.538 32.000 0.00 0.00 44.01 3.06
100 101 8.664669 ATTCCCCTACATGTTTAATGTTCTTT 57.335 30.769 2.30 0.00 33.76 2.52
116 117 4.667519 AGTCGATGTTGTATTCCCCTAC 57.332 45.455 0.00 0.00 0.00 3.18
117 118 5.069516 GGTTAGTCGATGTTGTATTCCCCTA 59.930 44.000 0.00 0.00 0.00 3.53
118 119 4.141779 GGTTAGTCGATGTTGTATTCCCCT 60.142 45.833 0.00 0.00 0.00 4.79
119 120 4.124970 GGTTAGTCGATGTTGTATTCCCC 58.875 47.826 0.00 0.00 0.00 4.81
156 157 1.555075 AGGAGGAGAAGCATTGCGTAA 59.445 47.619 2.38 0.00 0.00 3.18
177 178 1.771255 AGTCCAGAGCAACTCAAAGGT 59.229 47.619 0.00 0.00 32.06 3.50
187 188 4.682787 CGAATTACACATAGTCCAGAGCA 58.317 43.478 0.00 0.00 0.00 4.26
193 194 5.539582 TTGTTGCGAATTACACATAGTCC 57.460 39.130 0.00 0.00 0.00 3.85
198 199 6.194796 AGCTATTTGTTGCGAATTACACAT 57.805 33.333 0.00 0.00 0.00 3.21
201 202 6.247727 TGAAGCTATTTGTTGCGAATTACA 57.752 33.333 0.00 0.00 0.00 2.41
202 203 7.044052 GGATTGAAGCTATTTGTTGCGAATTAC 60.044 37.037 0.00 0.00 0.00 1.89
204 205 5.807011 GGATTGAAGCTATTTGTTGCGAATT 59.193 36.000 0.00 0.00 0.00 2.17
209 210 4.096732 ACGGATTGAAGCTATTTGTTGC 57.903 40.909 0.00 0.00 0.00 4.17
250 251 2.312390 GTTGTAGACCCCCTGCAAAAA 58.688 47.619 0.00 0.00 46.46 1.94
251 252 1.816183 CGTTGTAGACCCCCTGCAAAA 60.816 52.381 0.00 0.00 46.46 2.44
252 253 0.250553 CGTTGTAGACCCCCTGCAAA 60.251 55.000 0.00 0.00 46.46 3.68
253 254 1.122632 TCGTTGTAGACCCCCTGCAA 61.123 55.000 0.00 0.00 43.63 4.08
254 255 0.907704 ATCGTTGTAGACCCCCTGCA 60.908 55.000 0.00 0.00 35.65 4.41
255 256 0.462047 CATCGTTGTAGACCCCCTGC 60.462 60.000 0.00 0.00 0.00 4.85
256 257 0.902531 ACATCGTTGTAGACCCCCTG 59.097 55.000 0.00 0.00 33.16 4.45
257 258 1.652947 AACATCGTTGTAGACCCCCT 58.347 50.000 0.00 0.00 34.06 4.79
258 259 2.498885 AGTAACATCGTTGTAGACCCCC 59.501 50.000 0.00 0.00 34.06 5.40
259 260 3.881937 AGTAACATCGTTGTAGACCCC 57.118 47.619 0.00 0.00 34.06 4.95
260 261 4.813027 TGAAGTAACATCGTTGTAGACCC 58.187 43.478 0.00 0.00 34.06 4.46
261 262 6.963049 ATTGAAGTAACATCGTTGTAGACC 57.037 37.500 0.00 0.00 34.06 3.85
262 263 8.918658 TGTTATTGAAGTAACATCGTTGTAGAC 58.081 33.333 0.00 1.94 39.08 2.59
263 264 9.135843 CTGTTATTGAAGTAACATCGTTGTAGA 57.864 33.333 0.00 0.00 42.03 2.59
264 265 8.922676 ACTGTTATTGAAGTAACATCGTTGTAG 58.077 33.333 0.00 0.00 42.03 2.74
265 266 8.821147 ACTGTTATTGAAGTAACATCGTTGTA 57.179 30.769 0.00 0.00 42.03 2.41
266 267 7.724305 ACTGTTATTGAAGTAACATCGTTGT 57.276 32.000 0.00 0.00 42.03 3.32
267 268 8.495949 AGAACTGTTATTGAAGTAACATCGTTG 58.504 33.333 7.57 0.00 42.03 4.10
268 269 8.603242 AGAACTGTTATTGAAGTAACATCGTT 57.397 30.769 0.00 2.27 42.03 3.85
269 270 9.701098 TTAGAACTGTTATTGAAGTAACATCGT 57.299 29.630 0.00 0.00 42.03 3.73
321 322 7.656137 TGTCTCATTGTTCTTCTAAAGTACACC 59.344 37.037 0.00 0.00 38.32 4.16
322 323 8.589335 TGTCTCATTGTTCTTCTAAAGTACAC 57.411 34.615 0.00 0.00 38.32 2.90
333 334 9.434420 CTTCTATTCTTCTGTCTCATTGTTCTT 57.566 33.333 0.00 0.00 0.00 2.52
346 347 7.201600 GCTTAAAGTGCTCCTTCTATTCTTCTG 60.202 40.741 0.00 0.00 31.27 3.02
362 363 7.308435 AGACATTATTCTTGTGCTTAAAGTGC 58.692 34.615 0.00 0.00 0.00 4.40
371 372 7.227512 AGTGCCTATTAGACATTATTCTTGTGC 59.772 37.037 0.00 0.00 0.00 4.57
383 384 5.482526 TCCTGTAACAAGTGCCTATTAGACA 59.517 40.000 0.00 0.00 0.00 3.41
386 387 7.336931 ACAATTCCTGTAACAAGTGCCTATTAG 59.663 37.037 0.00 0.00 36.10 1.73
389 390 5.570320 ACAATTCCTGTAACAAGTGCCTAT 58.430 37.500 0.00 0.00 36.10 2.57
432 433 7.218614 TCTTTTTCTATGGGTCTCGTTTGTAA 58.781 34.615 0.00 0.00 0.00 2.41
503 3233 4.156664 AGTGTATTCGCGAGCGTATATT 57.843 40.909 17.24 5.43 40.74 1.28
534 3264 3.672867 GCGCGAAGATTCAAAAATTTGGA 59.327 39.130 12.10 0.00 38.66 3.53
558 3288 0.808847 GTAGTTTGGGGCCGTCGATC 60.809 60.000 0.00 0.00 0.00 3.69
565 3295 3.122971 GACGCGTAGTTTGGGGCC 61.123 66.667 13.97 0.00 0.00 5.80
594 3326 3.309296 TCGGGAAGAGGATTTAGAGCAT 58.691 45.455 0.00 0.00 0.00 3.79
611 3343 5.350640 GTCAGACCTACTAAAATGTTTCGGG 59.649 44.000 0.00 0.00 0.00 5.14
614 3346 9.152595 CCTTAGTCAGACCTACTAAAATGTTTC 57.847 37.037 0.00 0.00 38.58 2.78
621 3353 9.824216 ATATATGCCTTAGTCAGACCTACTAAA 57.176 33.333 0.00 0.00 38.58 1.85
637 3369 7.152645 CACGTTTGGTAGTCTATATATGCCTT 58.847 38.462 0.00 0.00 0.00 4.35
646 3378 3.906720 ATGGCACGTTTGGTAGTCTAT 57.093 42.857 0.00 0.00 0.00 1.98
647 3379 4.804868 TTATGGCACGTTTGGTAGTCTA 57.195 40.909 0.00 0.00 0.00 2.59
650 3382 3.119637 GCAATTATGGCACGTTTGGTAGT 60.120 43.478 0.00 0.00 0.00 2.73
672 3404 2.937591 AGTTCATGCAAGCATTTGACG 58.062 42.857 4.52 0.00 36.36 4.35
739 3472 3.663995 TGCCTGGAATGAATTGTGTTG 57.336 42.857 0.00 0.00 0.00 3.33
747 3480 0.676466 AACGCGATGCCTGGAATGAA 60.676 50.000 15.93 0.00 0.00 2.57
750 3483 2.173669 CGAACGCGATGCCTGGAAT 61.174 57.895 15.93 0.00 40.82 3.01
754 3487 0.869880 TCATACGAACGCGATGCCTG 60.870 55.000 15.93 2.87 41.64 4.85
760 3493 2.103538 GGCCTCATACGAACGCGA 59.896 61.111 15.93 0.00 41.64 5.87
761 3494 2.960129 GGGCCTCATACGAACGCG 60.960 66.667 3.53 3.53 44.79 6.01
765 3498 1.271856 TGAACAGGGCCTCATACGAA 58.728 50.000 0.95 0.00 0.00 3.85
782 3515 8.668353 CACTTTAGCTAAGCATCTTGTATTTGA 58.332 33.333 6.24 0.00 37.37 2.69
784 3517 7.337942 AGCACTTTAGCTAAGCATCTTGTATTT 59.662 33.333 16.00 0.00 44.50 1.40
788 3521 4.583871 AGCACTTTAGCTAAGCATCTTGT 58.416 39.130 16.00 3.07 44.50 3.16
794 3527 5.661056 TCTCTAAGCACTTTAGCTAAGCA 57.339 39.130 16.00 0.00 45.89 3.91
835 3568 9.330063 TCCTCTATAAATAAGCATCTGTGTTTG 57.670 33.333 0.00 0.00 30.94 2.93
842 3575 8.484214 TGTCTGTCCTCTATAAATAAGCATCT 57.516 34.615 0.00 0.00 0.00 2.90
843 3576 9.717942 AATGTCTGTCCTCTATAAATAAGCATC 57.282 33.333 0.00 0.00 0.00 3.91
871 3604 8.651389 TGCTAAGTGCTCCTATTTCTACATTAT 58.349 33.333 0.00 0.00 43.37 1.28
872 3605 8.018537 TGCTAAGTGCTCCTATTTCTACATTA 57.981 34.615 0.00 0.00 43.37 1.90
873 3606 6.889198 TGCTAAGTGCTCCTATTTCTACATT 58.111 36.000 0.00 0.00 43.37 2.71
875 3608 5.932619 TGCTAAGTGCTCCTATTTCTACA 57.067 39.130 0.00 0.00 43.37 2.74
876 3609 7.213678 AGAATGCTAAGTGCTCCTATTTCTAC 58.786 38.462 0.00 0.00 43.37 2.59
877 3610 7.366847 AGAATGCTAAGTGCTCCTATTTCTA 57.633 36.000 0.00 0.00 43.37 2.10
878 3611 6.245890 AGAATGCTAAGTGCTCCTATTTCT 57.754 37.500 0.00 0.00 43.37 2.52
879 3612 6.986817 TGTAGAATGCTAAGTGCTCCTATTTC 59.013 38.462 0.00 0.00 43.37 2.17
880 3613 6.889198 TGTAGAATGCTAAGTGCTCCTATTT 58.111 36.000 0.00 0.00 43.37 1.40
881 3614 6.485830 TGTAGAATGCTAAGTGCTCCTATT 57.514 37.500 0.00 0.00 43.37 1.73
882 3615 6.463614 CCTTGTAGAATGCTAAGTGCTCCTAT 60.464 42.308 0.00 0.00 43.37 2.57
884 3617 4.383552 CCTTGTAGAATGCTAAGTGCTCCT 60.384 45.833 0.00 0.00 43.37 3.69
885 3618 3.873952 CCTTGTAGAATGCTAAGTGCTCC 59.126 47.826 0.00 0.00 43.37 4.70
886 3619 3.311048 GCCTTGTAGAATGCTAAGTGCTC 59.689 47.826 0.00 0.00 43.37 4.26
930 3664 4.473520 CCGTACCTGGCAGGCAGG 62.474 72.222 35.91 35.91 39.63 4.85
1200 3937 1.883926 GAGGAGATAGAAGAGGCGTCC 59.116 57.143 2.06 0.00 0.00 4.79
1213 3950 1.549037 GGAGGAGTATGCGGAGGAGAT 60.549 57.143 0.00 0.00 0.00 2.75
1224 3961 1.834822 GGCAGCCGAGGAGGAGTAT 60.835 63.158 0.00 0.00 45.00 2.12
1409 4146 1.065491 CAGATCCCCGTCACAAATCCA 60.065 52.381 0.00 0.00 0.00 3.41
1428 4165 5.239963 TCCGTCGCTAATCACTGTATAATCA 59.760 40.000 0.00 0.00 0.00 2.57
1468 4205 2.916702 AAAAAGGTTAGTCGGTCGGT 57.083 45.000 0.00 0.00 0.00 4.69
1587 4324 3.190878 CGCTGATCCAAACAGGGC 58.809 61.111 0.00 0.00 40.30 5.19
1589 4326 1.200020 GGAAACGCTGATCCAAACAGG 59.800 52.381 0.00 0.00 35.71 4.00
1590 4327 2.619013 GGAAACGCTGATCCAAACAG 57.381 50.000 0.00 0.00 35.71 3.16
1604 4341 7.524294 TTACGGATGTATTTAGAACGGAAAC 57.476 36.000 0.00 0.00 0.00 2.78
1605 4342 8.545229 TTTTACGGATGTATTTAGAACGGAAA 57.455 30.769 0.00 0.00 31.68 3.13
1606 4343 8.721019 ATTTTACGGATGTATTTAGAACGGAA 57.279 30.769 0.00 0.00 0.00 4.30
1614 4351 9.439500 GGCCTGTATATTTTACGGATGTATTTA 57.561 33.333 0.00 0.00 0.00 1.40
1615 4352 8.161425 AGGCCTGTATATTTTACGGATGTATTT 58.839 33.333 3.11 0.00 0.00 1.40
1617 4354 7.253905 AGGCCTGTATATTTTACGGATGTAT 57.746 36.000 3.11 0.00 0.00 2.29
1619 4356 5.548406 GAGGCCTGTATATTTTACGGATGT 58.452 41.667 12.00 0.00 0.00 3.06
1620 4357 4.625742 CGAGGCCTGTATATTTTACGGATG 59.374 45.833 12.00 0.00 0.00 3.51
1623 4360 3.243975 ACCGAGGCCTGTATATTTTACGG 60.244 47.826 12.00 15.84 41.85 4.02
1624 4361 3.985925 GACCGAGGCCTGTATATTTTACG 59.014 47.826 12.00 2.41 0.00 3.18
1625 4362 4.989168 CAGACCGAGGCCTGTATATTTTAC 59.011 45.833 12.00 0.00 0.00 2.01
1628 4365 3.039011 ACAGACCGAGGCCTGTATATTT 58.961 45.455 12.00 0.00 41.38 1.40
1629 4366 2.628657 GACAGACCGAGGCCTGTATATT 59.371 50.000 12.00 0.00 43.02 1.28
1630 4367 2.240279 GACAGACCGAGGCCTGTATAT 58.760 52.381 12.00 0.00 43.02 0.86
1631 4368 1.688772 GACAGACCGAGGCCTGTATA 58.311 55.000 12.00 0.00 43.02 1.47
1632 4369 1.384989 CGACAGACCGAGGCCTGTAT 61.385 60.000 12.00 0.00 43.02 2.29
1633 4370 2.044555 CGACAGACCGAGGCCTGTA 61.045 63.158 12.00 0.00 43.02 2.74
1634 4371 3.374402 CGACAGACCGAGGCCTGT 61.374 66.667 12.00 10.86 45.37 4.00
1635 4372 2.436087 AAACGACAGACCGAGGCCTG 62.436 60.000 12.00 0.00 36.53 4.85
1636 4373 2.156051 GAAACGACAGACCGAGGCCT 62.156 60.000 3.86 3.86 0.00 5.19
1640 4377 2.412089 GGAAATGAAACGACAGACCGAG 59.588 50.000 0.00 0.00 0.00 4.63
1641 4378 2.409975 GGAAATGAAACGACAGACCGA 58.590 47.619 0.00 0.00 0.00 4.69
1642 4379 1.126113 CGGAAATGAAACGACAGACCG 59.874 52.381 0.00 0.00 0.00 4.79
1645 4382 0.787787 CGCGGAAATGAAACGACAGA 59.212 50.000 0.00 0.00 0.00 3.41
1648 4385 0.233848 ACACGCGGAAATGAAACGAC 59.766 50.000 12.47 0.00 0.00 4.34
1650 4387 2.580729 TTACACGCGGAAATGAAACG 57.419 45.000 12.47 0.00 0.00 3.60
1651 4388 4.432373 GCAATTTACACGCGGAAATGAAAC 60.432 41.667 12.47 1.21 0.00 2.78
1652 4389 3.670991 GCAATTTACACGCGGAAATGAAA 59.329 39.130 12.47 2.14 0.00 2.69
1653 4390 3.057876 AGCAATTTACACGCGGAAATGAA 60.058 39.130 12.47 0.00 0.00 2.57
1654 4391 2.486203 AGCAATTTACACGCGGAAATGA 59.514 40.909 12.47 0.00 0.00 2.57
1655 4392 2.845967 GAGCAATTTACACGCGGAAATG 59.154 45.455 12.47 1.02 0.00 2.32
1656 4393 2.486203 TGAGCAATTTACACGCGGAAAT 59.514 40.909 12.47 10.48 0.00 2.17
1657 4394 1.874231 TGAGCAATTTACACGCGGAAA 59.126 42.857 12.47 8.37 0.00 3.13
1658 4395 1.514003 TGAGCAATTTACACGCGGAA 58.486 45.000 12.47 0.00 0.00 4.30
1659 4396 1.663643 GATGAGCAATTTACACGCGGA 59.336 47.619 12.47 0.00 0.00 5.54
1660 4397 1.396648 TGATGAGCAATTTACACGCGG 59.603 47.619 12.47 1.27 0.00 6.46
1661 4398 2.094258 ACTGATGAGCAATTTACACGCG 59.906 45.455 3.53 3.53 0.00 6.01
1662 4399 3.674423 GACTGATGAGCAATTTACACGC 58.326 45.455 0.00 0.00 0.00 5.34
1663 4400 3.242091 CCGACTGATGAGCAATTTACACG 60.242 47.826 0.00 0.00 0.00 4.49
1664 4401 3.684788 ACCGACTGATGAGCAATTTACAC 59.315 43.478 0.00 0.00 0.00 2.90
1665 4402 3.937814 ACCGACTGATGAGCAATTTACA 58.062 40.909 0.00 0.00 0.00 2.41
1666 4403 5.581085 ACTTACCGACTGATGAGCAATTTAC 59.419 40.000 0.00 0.00 0.00 2.01
1667 4404 5.730550 ACTTACCGACTGATGAGCAATTTA 58.269 37.500 0.00 0.00 0.00 1.40
1668 4405 4.579869 ACTTACCGACTGATGAGCAATTT 58.420 39.130 0.00 0.00 0.00 1.82
1669 4406 4.207891 ACTTACCGACTGATGAGCAATT 57.792 40.909 0.00 0.00 0.00 2.32
1670 4407 3.895232 ACTTACCGACTGATGAGCAAT 57.105 42.857 0.00 0.00 0.00 3.56
1671 4408 3.678056 AACTTACCGACTGATGAGCAA 57.322 42.857 0.00 0.00 0.00 3.91
1672 4409 3.508402 TGTAACTTACCGACTGATGAGCA 59.492 43.478 0.00 0.00 0.00 4.26
1673 4410 3.858238 GTGTAACTTACCGACTGATGAGC 59.142 47.826 0.00 0.00 0.00 4.26
1674 4411 4.096311 CGTGTAACTTACCGACTGATGAG 58.904 47.826 0.00 0.00 31.75 2.90
1675 4412 3.503363 ACGTGTAACTTACCGACTGATGA 59.497 43.478 13.46 0.00 31.75 2.92
1676 4413 3.606777 CACGTGTAACTTACCGACTGATG 59.393 47.826 7.58 2.19 31.75 3.07
1677 4414 3.254166 ACACGTGTAACTTACCGACTGAT 59.746 43.478 21.98 0.00 31.75 2.90
1678 4415 2.618241 ACACGTGTAACTTACCGACTGA 59.382 45.455 21.98 0.00 31.75 3.41
1679 4416 3.004024 ACACGTGTAACTTACCGACTG 57.996 47.619 21.98 7.39 31.75 3.51
1680 4417 4.829064 TTACACGTGTAACTTACCGACT 57.171 40.909 31.86 4.45 35.75 4.18
1681 4418 4.737765 TGTTTACACGTGTAACTTACCGAC 59.262 41.667 34.51 27.30 39.92 4.79
1682 4419 4.926244 TGTTTACACGTGTAACTTACCGA 58.074 39.130 34.51 19.06 39.92 4.69
1683 4420 5.633996 TTGTTTACACGTGTAACTTACCG 57.366 39.130 34.51 0.40 39.92 4.02
1684 4421 7.239972 TGTTTTGTTTACACGTGTAACTTACC 58.760 34.615 34.51 22.03 39.92 2.85
1685 4422 7.045419 GCTGTTTTGTTTACACGTGTAACTTAC 60.045 37.037 34.51 29.08 39.92 2.34
1686 4423 6.960431 GCTGTTTTGTTTACACGTGTAACTTA 59.040 34.615 34.51 21.05 39.92 2.24
1687 4424 5.796437 GCTGTTTTGTTTACACGTGTAACTT 59.204 36.000 34.51 10.63 39.92 2.66
1688 4425 5.326292 GCTGTTTTGTTTACACGTGTAACT 58.674 37.500 34.51 11.02 39.92 2.24
1689 4426 4.496539 GGCTGTTTTGTTTACACGTGTAAC 59.503 41.667 34.51 27.78 39.92 2.50
1690 4427 4.438472 GGGCTGTTTTGTTTACACGTGTAA 60.438 41.667 31.86 31.86 38.60 2.41
1691 4428 3.065095 GGGCTGTTTTGTTTACACGTGTA 59.935 43.478 24.10 24.10 0.00 2.90
1692 4429 2.159352 GGGCTGTTTTGTTTACACGTGT 60.159 45.455 26.52 26.52 0.00 4.49
1693 4430 2.456010 GGGCTGTTTTGTTTACACGTG 58.544 47.619 15.48 15.48 0.00 4.49
1694 4431 1.406180 GGGGCTGTTTTGTTTACACGT 59.594 47.619 0.00 0.00 0.00 4.49
1695 4432 1.598430 CGGGGCTGTTTTGTTTACACG 60.598 52.381 0.00 0.00 0.00 4.49
1696 4433 1.406180 ACGGGGCTGTTTTGTTTACAC 59.594 47.619 0.00 0.00 0.00 2.90
1697 4434 1.765230 ACGGGGCTGTTTTGTTTACA 58.235 45.000 0.00 0.00 0.00 2.41
1698 4435 4.508461 AATACGGGGCTGTTTTGTTTAC 57.492 40.909 0.00 0.00 0.00 2.01
1699 4436 6.837471 AATAATACGGGGCTGTTTTGTTTA 57.163 33.333 0.00 0.00 0.00 2.01
1700 4437 5.731957 AATAATACGGGGCTGTTTTGTTT 57.268 34.783 0.00 0.00 0.00 2.83
1701 4438 5.731957 AAATAATACGGGGCTGTTTTGTT 57.268 34.783 0.00 0.00 0.00 2.83
1702 4439 5.731957 AAAATAATACGGGGCTGTTTTGT 57.268 34.783 0.00 0.00 0.00 2.83
1703 4440 6.622549 TGTAAAATAATACGGGGCTGTTTTG 58.377 36.000 0.00 0.00 0.00 2.44
1704 4441 6.837471 TGTAAAATAATACGGGGCTGTTTT 57.163 33.333 0.00 0.00 0.00 2.43
1705 4442 6.040054 GGATGTAAAATAATACGGGGCTGTTT 59.960 38.462 0.00 0.00 0.00 2.83
1706 4443 5.533528 GGATGTAAAATAATACGGGGCTGTT 59.466 40.000 0.00 0.00 0.00 3.16
1707 4444 5.067954 GGATGTAAAATAATACGGGGCTGT 58.932 41.667 0.00 0.00 0.00 4.40
1708 4445 5.067273 TGGATGTAAAATAATACGGGGCTG 58.933 41.667 0.00 0.00 0.00 4.85
1709 4446 5.313280 TGGATGTAAAATAATACGGGGCT 57.687 39.130 0.00 0.00 0.00 5.19
1710 4447 6.349860 GGATTGGATGTAAAATAATACGGGGC 60.350 42.308 0.00 0.00 0.00 5.80
1711 4448 6.717540 TGGATTGGATGTAAAATAATACGGGG 59.282 38.462 0.00 0.00 0.00 5.73
1712 4449 7.753309 TGGATTGGATGTAAAATAATACGGG 57.247 36.000 0.00 0.00 0.00 5.28
1713 4450 7.807907 GCTTGGATTGGATGTAAAATAATACGG 59.192 37.037 0.00 0.00 0.00 4.02
1714 4451 7.533900 CGCTTGGATTGGATGTAAAATAATACG 59.466 37.037 0.00 0.00 0.00 3.06
1715 4452 7.326063 GCGCTTGGATTGGATGTAAAATAATAC 59.674 37.037 0.00 0.00 0.00 1.89
1716 4453 7.367285 GCGCTTGGATTGGATGTAAAATAATA 58.633 34.615 0.00 0.00 0.00 0.98
1717 4454 6.215845 GCGCTTGGATTGGATGTAAAATAAT 58.784 36.000 0.00 0.00 0.00 1.28
1718 4455 5.587289 GCGCTTGGATTGGATGTAAAATAA 58.413 37.500 0.00 0.00 0.00 1.40
1719 4456 4.260990 CGCGCTTGGATTGGATGTAAAATA 60.261 41.667 5.56 0.00 0.00 1.40
1720 4457 3.489059 CGCGCTTGGATTGGATGTAAAAT 60.489 43.478 5.56 0.00 0.00 1.82
1721 4458 2.159448 CGCGCTTGGATTGGATGTAAAA 60.159 45.455 5.56 0.00 0.00 1.52
1722 4459 1.400142 CGCGCTTGGATTGGATGTAAA 59.600 47.619 5.56 0.00 0.00 2.01
1723 4460 1.013596 CGCGCTTGGATTGGATGTAA 58.986 50.000 5.56 0.00 0.00 2.41
1724 4461 1.436195 GCGCGCTTGGATTGGATGTA 61.436 55.000 26.67 0.00 0.00 2.29
1725 4462 2.764314 GCGCGCTTGGATTGGATGT 61.764 57.895 26.67 0.00 0.00 3.06
1726 4463 2.025156 GCGCGCTTGGATTGGATG 59.975 61.111 26.67 0.00 0.00 3.51
1727 4464 3.211963 GGCGCGCTTGGATTGGAT 61.212 61.111 32.29 0.00 0.00 3.41
1730 4467 2.051804 CTAAGGGCGCGCTTGGATTG 62.052 60.000 40.07 23.63 0.00 2.67
1731 4468 1.819632 CTAAGGGCGCGCTTGGATT 60.820 57.895 40.07 22.63 0.00 3.01
1732 4469 2.203070 CTAAGGGCGCGCTTGGAT 60.203 61.111 40.07 22.98 0.00 3.41
1733 4470 4.467084 CCTAAGGGCGCGCTTGGA 62.467 66.667 39.56 25.56 0.00 3.53
1734 4471 4.778143 ACCTAAGGGCGCGCTTGG 62.778 66.667 40.07 36.99 35.63 3.61
1735 4472 3.499737 CACCTAAGGGCGCGCTTG 61.500 66.667 40.07 29.40 35.63 4.01
1736 4473 3.546714 AACACCTAAGGGCGCGCTT 62.547 57.895 36.91 36.91 35.63 4.68
1737 4474 4.016706 AACACCTAAGGGCGCGCT 62.017 61.111 32.29 22.73 35.63 5.92
2526 5267 7.419750 GGAGGATTATACCATACAGACCAACAA 60.420 40.741 0.00 0.00 0.00 2.83
2540 5281 7.284716 CACAAGGTTAAAAGGGAGGATTATACC 59.715 40.741 0.00 0.00 0.00 2.73
3068 5810 8.364894 TGTCAGCTGTTTTAGTCTCTACAATAA 58.635 33.333 14.67 0.00 0.00 1.40
3295 6037 6.114767 ACACAATTGCAGAACTTCCAAATTT 58.885 32.000 5.05 0.00 0.00 1.82
3298 6040 4.734398 ACACAATTGCAGAACTTCCAAA 57.266 36.364 5.05 0.00 0.00 3.28
3450 6192 8.418597 ACTCAGGTATAGGAAAATAGCGAATA 57.581 34.615 0.00 0.00 35.47 1.75
3454 6196 6.978338 TGTACTCAGGTATAGGAAAATAGCG 58.022 40.000 0.00 0.00 35.47 4.26
3466 6208 5.450453 ACTGATGCTACTGTACTCAGGTAT 58.550 41.667 15.87 0.39 45.14 2.73
3963 7033 2.777094 TGTCAATTCGGCAGTGATTCA 58.223 42.857 0.00 0.00 0.00 2.57
3972 7042 4.980590 TGTTATGTTGATGTCAATTCGGC 58.019 39.130 0.00 0.00 38.24 5.54
4080 7150 6.923199 ATTCAAAATTCCCAACTCATGAGT 57.077 33.333 22.89 22.89 44.94 3.41
4086 7156 5.299949 AGCACAATTCAAAATTCCCAACTC 58.700 37.500 0.00 0.00 0.00 3.01
4154 7224 3.506096 GAAAAGCCCTACCCGCGC 61.506 66.667 0.00 0.00 0.00 6.86
4155 7225 0.958876 AAAGAAAAGCCCTACCCGCG 60.959 55.000 0.00 0.00 0.00 6.46
4156 7226 0.809385 GAAAGAAAAGCCCTACCCGC 59.191 55.000 0.00 0.00 0.00 6.13
4157 7227 2.491675 AGAAAGAAAAGCCCTACCCG 57.508 50.000 0.00 0.00 0.00 5.28
4158 7228 4.344102 ACAAAAGAAAGAAAAGCCCTACCC 59.656 41.667 0.00 0.00 0.00 3.69
4159 7229 5.531122 ACAAAAGAAAGAAAAGCCCTACC 57.469 39.130 0.00 0.00 0.00 3.18
4160 7230 7.652105 CCTAAACAAAAGAAAGAAAAGCCCTAC 59.348 37.037 0.00 0.00 0.00 3.18
4161 7231 7.562088 TCCTAAACAAAAGAAAGAAAAGCCCTA 59.438 33.333 0.00 0.00 0.00 3.53
4162 7232 6.382859 TCCTAAACAAAAGAAAGAAAAGCCCT 59.617 34.615 0.00 0.00 0.00 5.19
4163 7233 6.578944 TCCTAAACAAAAGAAAGAAAAGCCC 58.421 36.000 0.00 0.00 0.00 5.19
4164 7234 7.171508 CCATCCTAAACAAAAGAAAGAAAAGCC 59.828 37.037 0.00 0.00 0.00 4.35
4165 7235 7.171508 CCCATCCTAAACAAAAGAAAGAAAAGC 59.828 37.037 0.00 0.00 0.00 3.51
4166 7236 7.171508 GCCCATCCTAAACAAAAGAAAGAAAAG 59.828 37.037 0.00 0.00 0.00 2.27
4167 7237 6.989759 GCCCATCCTAAACAAAAGAAAGAAAA 59.010 34.615 0.00 0.00 0.00 2.29
4168 7238 6.098982 TGCCCATCCTAAACAAAAGAAAGAAA 59.901 34.615 0.00 0.00 0.00 2.52
4169 7239 5.600484 TGCCCATCCTAAACAAAAGAAAGAA 59.400 36.000 0.00 0.00 0.00 2.52
4170 7240 5.144100 TGCCCATCCTAAACAAAAGAAAGA 58.856 37.500 0.00 0.00 0.00 2.52
4171 7241 5.467035 TGCCCATCCTAAACAAAAGAAAG 57.533 39.130 0.00 0.00 0.00 2.62
4172 7242 5.600484 TCTTGCCCATCCTAAACAAAAGAAA 59.400 36.000 0.00 0.00 0.00 2.52
4173 7243 5.144100 TCTTGCCCATCCTAAACAAAAGAA 58.856 37.500 0.00 0.00 0.00 2.52
4174 7244 4.735369 TCTTGCCCATCCTAAACAAAAGA 58.265 39.130 0.00 0.00 0.00 2.52
4175 7245 4.082026 CCTCTTGCCCATCCTAAACAAAAG 60.082 45.833 0.00 0.00 0.00 2.27
4176 7246 3.831911 CCTCTTGCCCATCCTAAACAAAA 59.168 43.478 0.00 0.00 0.00 2.44
4177 7247 3.075283 TCCTCTTGCCCATCCTAAACAAA 59.925 43.478 0.00 0.00 0.00 2.83
4178 7248 2.647299 TCCTCTTGCCCATCCTAAACAA 59.353 45.455 0.00 0.00 0.00 2.83
4179 7249 2.274542 TCCTCTTGCCCATCCTAAACA 58.725 47.619 0.00 0.00 0.00 2.83
4180 7250 3.217626 CATCCTCTTGCCCATCCTAAAC 58.782 50.000 0.00 0.00 0.00 2.01
4181 7251 2.175499 CCATCCTCTTGCCCATCCTAAA 59.825 50.000 0.00 0.00 0.00 1.85
4182 7252 1.776667 CCATCCTCTTGCCCATCCTAA 59.223 52.381 0.00 0.00 0.00 2.69
4183 7253 1.438469 CCATCCTCTTGCCCATCCTA 58.562 55.000 0.00 0.00 0.00 2.94
4184 7254 2.004408 GCCATCCTCTTGCCCATCCT 62.004 60.000 0.00 0.00 0.00 3.24
4185 7255 1.530183 GCCATCCTCTTGCCCATCC 60.530 63.158 0.00 0.00 0.00 3.51
4186 7256 0.822532 CAGCCATCCTCTTGCCCATC 60.823 60.000 0.00 0.00 0.00 3.51
4187 7257 1.229359 CAGCCATCCTCTTGCCCAT 59.771 57.895 0.00 0.00 0.00 4.00
4188 7258 2.679092 CAGCCATCCTCTTGCCCA 59.321 61.111 0.00 0.00 0.00 5.36
4189 7259 2.832201 GCAGCCATCCTCTTGCCC 60.832 66.667 0.00 0.00 0.00 5.36
4190 7260 2.832201 GGCAGCCATCCTCTTGCC 60.832 66.667 6.55 0.00 35.20 4.52
4191 7261 1.823041 GAGGCAGCCATCCTCTTGC 60.823 63.158 15.80 0.00 45.13 4.01
4192 7262 1.523258 CGAGGCAGCCATCCTCTTG 60.523 63.158 15.80 0.00 46.11 3.02
4193 7263 2.739996 CCGAGGCAGCCATCCTCTT 61.740 63.158 15.80 0.00 46.11 2.85
4194 7264 3.160047 CCGAGGCAGCCATCCTCT 61.160 66.667 15.80 0.00 46.11 3.69
4195 7265 4.925861 GCCGAGGCAGCCATCCTC 62.926 72.222 15.80 0.54 45.12 3.71
4197 7267 4.496336 AAGCCGAGGCAGCCATCC 62.496 66.667 15.80 0.92 44.88 3.51
4198 7268 2.899339 GAAGCCGAGGCAGCCATC 60.899 66.667 15.80 7.51 44.88 3.51
4199 7269 2.769652 TTTGAAGCCGAGGCAGCCAT 62.770 55.000 15.80 0.00 44.88 4.40
4200 7270 3.490031 TTTGAAGCCGAGGCAGCCA 62.490 57.895 15.80 7.83 44.88 4.75
4201 7271 2.672996 TTTGAAGCCGAGGCAGCC 60.673 61.111 17.18 1.84 44.88 4.85
4202 7272 2.873288 CTTTGAAGCCGAGGCAGC 59.127 61.111 17.18 8.00 44.88 5.25
4203 7273 2.873288 GCTTTGAAGCCGAGGCAG 59.127 61.111 17.18 5.49 46.20 4.85
4212 7282 4.645956 CGCATTCTCTAACAGCTTTGAAG 58.354 43.478 0.00 0.00 0.00 3.02
4213 7283 3.120199 GCGCATTCTCTAACAGCTTTGAA 60.120 43.478 0.30 0.00 0.00 2.69
4214 7284 2.416547 GCGCATTCTCTAACAGCTTTGA 59.583 45.455 0.30 0.00 0.00 2.69
4215 7285 2.417933 AGCGCATTCTCTAACAGCTTTG 59.582 45.455 11.47 0.00 0.00 2.77
4216 7286 2.675348 GAGCGCATTCTCTAACAGCTTT 59.325 45.455 11.47 0.00 33.26 3.51
4217 7287 2.093764 AGAGCGCATTCTCTAACAGCTT 60.094 45.455 11.47 0.00 41.35 3.74
4218 7288 1.480137 AGAGCGCATTCTCTAACAGCT 59.520 47.619 11.47 0.00 41.35 4.24
4219 7289 1.933247 AGAGCGCATTCTCTAACAGC 58.067 50.000 11.47 0.00 41.35 4.40
4220 7290 5.174761 GTGATAAGAGCGCATTCTCTAACAG 59.825 44.000 11.47 0.00 42.25 3.16
4221 7291 5.043903 GTGATAAGAGCGCATTCTCTAACA 58.956 41.667 11.47 2.41 42.25 2.41
4222 7292 5.285651 AGTGATAAGAGCGCATTCTCTAAC 58.714 41.667 11.47 2.27 42.25 2.34
4223 7293 5.521906 AGTGATAAGAGCGCATTCTCTAA 57.478 39.130 11.47 0.00 42.25 2.10
4224 7294 5.531287 TGTAGTGATAAGAGCGCATTCTCTA 59.469 40.000 11.47 6.48 42.25 2.43
4225 7295 4.339530 TGTAGTGATAAGAGCGCATTCTCT 59.660 41.667 11.47 0.00 44.78 3.10
4226 7296 4.611943 TGTAGTGATAAGAGCGCATTCTC 58.388 43.478 11.47 6.98 0.00 2.87
4227 7297 4.500545 CCTGTAGTGATAAGAGCGCATTCT 60.501 45.833 11.47 0.49 0.00 2.40
4228 7298 3.738282 CCTGTAGTGATAAGAGCGCATTC 59.262 47.826 11.47 0.00 0.00 2.67
4229 7299 3.493350 CCCTGTAGTGATAAGAGCGCATT 60.493 47.826 11.47 6.65 0.00 3.56
4230 7300 2.036475 CCCTGTAGTGATAAGAGCGCAT 59.964 50.000 11.47 0.00 0.00 4.73
4231 7301 1.409064 CCCTGTAGTGATAAGAGCGCA 59.591 52.381 11.47 0.00 0.00 6.09
4232 7302 1.681793 TCCCTGTAGTGATAAGAGCGC 59.318 52.381 0.00 0.00 0.00 5.92
4233 7303 2.287069 CGTCCCTGTAGTGATAAGAGCG 60.287 54.545 0.00 0.00 0.00 5.03
4234 7304 2.544069 GCGTCCCTGTAGTGATAAGAGC 60.544 54.545 0.00 0.00 0.00 4.09
4235 7305 2.287069 CGCGTCCCTGTAGTGATAAGAG 60.287 54.545 0.00 0.00 0.00 2.85
4236 7306 1.674441 CGCGTCCCTGTAGTGATAAGA 59.326 52.381 0.00 0.00 0.00 2.10
4237 7307 1.404391 ACGCGTCCCTGTAGTGATAAG 59.596 52.381 5.58 0.00 0.00 1.73
4238 7308 1.402968 GACGCGTCCCTGTAGTGATAA 59.597 52.381 28.61 0.00 0.00 1.75
4239 7309 1.019673 GACGCGTCCCTGTAGTGATA 58.980 55.000 28.61 0.00 0.00 2.15
4240 7310 0.963856 TGACGCGTCCCTGTAGTGAT 60.964 55.000 34.34 0.00 0.00 3.06
4241 7311 1.583495 CTGACGCGTCCCTGTAGTGA 61.583 60.000 34.34 13.03 0.00 3.41
4242 7312 1.154016 CTGACGCGTCCCTGTAGTG 60.154 63.158 34.34 11.51 0.00 2.74
4243 7313 0.680280 ATCTGACGCGTCCCTGTAGT 60.680 55.000 34.34 13.25 0.00 2.73
4244 7314 0.248661 CATCTGACGCGTCCCTGTAG 60.249 60.000 34.34 24.25 0.00 2.74
4245 7315 0.678684 TCATCTGACGCGTCCCTGTA 60.679 55.000 34.34 16.01 0.00 2.74
4246 7316 1.532604 TTCATCTGACGCGTCCCTGT 61.533 55.000 34.34 16.17 0.00 4.00
4247 7317 0.389817 TTTCATCTGACGCGTCCCTG 60.390 55.000 34.34 26.37 0.00 4.45
4248 7318 0.537188 ATTTCATCTGACGCGTCCCT 59.463 50.000 34.34 17.17 0.00 4.20
4249 7319 2.218953 TATTTCATCTGACGCGTCCC 57.781 50.000 34.34 14.09 0.00 4.46
4250 7320 4.270084 TCAAATATTTCATCTGACGCGTCC 59.730 41.667 34.34 18.00 0.00 4.79
4251 7321 5.389642 TCAAATATTTCATCTGACGCGTC 57.610 39.130 31.66 31.66 0.00 5.19
4252 7322 5.794687 TTCAAATATTTCATCTGACGCGT 57.205 34.783 13.85 13.85 0.00 6.01
4253 7323 7.218773 ACAAATTCAAATATTTCATCTGACGCG 59.781 33.333 3.53 3.53 0.00 6.01
4266 7336 9.452287 AGGCTATTTTGCAACAAATTCAAATAT 57.548 25.926 0.00 0.00 30.89 1.28
4412 7482 7.122204 GGTAATCAACTAATGTTTAGGGCAGTT 59.878 37.037 0.00 0.00 33.52 3.16
4502 7573 4.021544 GGGCAATGAAATAAACAGGACACA 60.022 41.667 0.00 0.00 0.00 3.72
4572 7643 3.551635 AGACTAGGGGGTATGAGATGG 57.448 52.381 0.00 0.00 0.00 3.51
4585 7656 2.432510 CTCAAGCAACCCCTAGACTAGG 59.567 54.545 20.23 20.23 45.81 3.02
4589 7660 1.903183 AGTCTCAAGCAACCCCTAGAC 59.097 52.381 0.00 0.00 34.85 2.59
4626 7697 5.002561 CGTACAGATATCATAACATGACGCG 59.997 44.000 3.53 3.53 43.01 6.01
4668 7739 2.046313 CTGTTTGAATGTGTTCAGCGC 58.954 47.619 0.00 0.00 44.62 5.92
4669 7740 3.607422 TCTGTTTGAATGTGTTCAGCG 57.393 42.857 0.00 0.00 44.62 5.18
4724 7796 0.535102 AAGCACAAGTCCACCCTTCG 60.535 55.000 0.00 0.00 0.00 3.79
4756 7828 5.450818 TTATCAGCAGGGGATTTTACTGT 57.549 39.130 0.00 0.00 34.79 3.55
4978 8050 4.381825 GCATAATTTCCCAATCAGCACACA 60.382 41.667 0.00 0.00 0.00 3.72
5126 8204 8.819015 CATGTTGTTCTTTGATCATTTGTCAAA 58.181 29.630 0.00 0.00 41.75 2.69
5204 8282 7.840931 TGATGTAGCTCAAGATTTACAAGAGA 58.159 34.615 0.00 0.00 30.64 3.10
5262 8340 3.568007 GTCAACATGTTAAGCCTGACCAA 59.432 43.478 11.53 0.00 0.00 3.67
5264 8342 3.058224 GTGTCAACATGTTAAGCCTGACC 60.058 47.826 18.68 9.77 33.78 4.02
5443 8521 6.013119 TGCCTTCATCCACATATATGACATCT 60.013 38.462 19.63 0.00 31.99 2.90
5526 8604 2.446036 GACCTAGGCCCGACCCAT 60.446 66.667 9.30 0.00 40.58 4.00
5566 8644 6.042781 AGGCCGGAGATGAGTTAATATGTTTA 59.957 38.462 5.05 0.00 0.00 2.01
5573 8651 1.694696 GGAGGCCGGAGATGAGTTAAT 59.305 52.381 5.05 0.00 0.00 1.40
5621 8699 0.320374 TTCGGAGAAACTGGCACGAT 59.680 50.000 0.00 0.00 45.90 3.73
5825 8904 5.109210 ACAACACGGATCATACACACATAG 58.891 41.667 0.00 0.00 0.00 2.23
5826 8905 5.079689 ACAACACGGATCATACACACATA 57.920 39.130 0.00 0.00 0.00 2.29
5930 9009 2.898612 TGAATTTGGCCTCAGCATCAAA 59.101 40.909 3.32 0.00 42.56 2.69
6124 9256 4.590918 TGATTCTAGTCGTCCTTCAGAGT 58.409 43.478 0.00 0.00 0.00 3.24
6125 9257 5.766150 ATGATTCTAGTCGTCCTTCAGAG 57.234 43.478 0.00 0.00 0.00 3.35
6128 9260 5.886474 ACTGTATGATTCTAGTCGTCCTTCA 59.114 40.000 0.00 0.00 0.00 3.02
6262 9395 1.465777 CGCATGCACAAGACTCAATCA 59.534 47.619 19.57 0.00 0.00 2.57
6283 9416 5.349817 ACTGATCTGCATTACGTGAAGAAAG 59.650 40.000 0.00 0.00 45.73 2.62
6400 9533 2.437413 GTGGAGATGTTTGGAACTCCC 58.563 52.381 0.00 0.00 45.61 4.30
6401 9534 2.040412 AGGTGGAGATGTTTGGAACTCC 59.960 50.000 0.00 0.00 46.16 3.85
6432 9565 7.141100 TCAAGAAAATTCGTTCCTAATGGAC 57.859 36.000 0.00 0.00 43.06 4.02
6468 9601 3.568007 GCTCCTAGATCTCACGTCAGATT 59.432 47.826 2.59 0.00 32.94 2.40
6496 9629 0.766131 TCCAAGGGGTTCGTTTGCTA 59.234 50.000 0.00 0.00 34.93 3.49
6497 9630 0.822121 GTCCAAGGGGTTCGTTTGCT 60.822 55.000 0.00 0.00 34.93 3.91
6498 9631 1.658114 GTCCAAGGGGTTCGTTTGC 59.342 57.895 0.00 0.00 34.93 3.68
6499 9632 1.512156 CCGTCCAAGGGGTTCGTTTG 61.512 60.000 0.00 0.00 34.93 2.93
6500 9633 1.228033 CCGTCCAAGGGGTTCGTTT 60.228 57.895 0.00 0.00 34.93 3.60
6501 9634 1.986632 AACCGTCCAAGGGGTTCGTT 61.987 55.000 0.00 0.00 42.76 3.85
6502 9635 2.445983 AACCGTCCAAGGGGTTCGT 61.446 57.895 0.00 0.00 42.76 3.85
6503 9636 2.428622 AACCGTCCAAGGGGTTCG 59.571 61.111 0.00 0.00 42.76 3.95
6506 9639 4.324991 GCGAACCGTCCAAGGGGT 62.325 66.667 0.00 0.00 38.44 4.95
6507 9640 2.652095 TAGCGAACCGTCCAAGGGG 61.652 63.158 0.00 0.00 35.02 4.79
6508 9641 1.447314 GTAGCGAACCGTCCAAGGG 60.447 63.158 0.00 0.00 35.02 3.95
6509 9642 0.320073 TTGTAGCGAACCGTCCAAGG 60.320 55.000 0.00 0.00 37.30 3.61
6510 9643 1.722011 ATTGTAGCGAACCGTCCAAG 58.278 50.000 0.00 0.00 0.00 3.61
6561 9694 1.502163 CGGATCGGCCTCAAAGATGC 61.502 60.000 0.00 0.00 0.00 3.91
6567 9700 2.038269 GTTTGCGGATCGGCCTCAA 61.038 57.895 21.10 9.59 39.51 3.02
6568 9701 2.435938 GTTTGCGGATCGGCCTCA 60.436 61.111 21.10 4.05 0.00 3.86
6571 9704 3.202706 GAGGTTTGCGGATCGGCC 61.203 66.667 21.10 7.07 0.00 6.13
6577 9710 1.959226 GTTGCGAGAGGTTTGCGGA 60.959 57.895 0.00 0.00 39.21 5.54
6586 9719 2.087009 GTCCGAACGGTTGCGAGAG 61.087 63.158 12.93 0.00 36.47 3.20
6588 9721 3.110178 GGTCCGAACGGTTGCGAG 61.110 66.667 12.93 0.00 36.47 5.03
6621 9754 1.522569 GGGCCGATACAAGACTGCT 59.477 57.895 0.00 0.00 0.00 4.24
6625 9758 2.894240 TTCGCGGGCCGATACAAGAC 62.894 60.000 33.44 8.12 46.81 3.01
6627 9760 2.202824 TTCGCGGGCCGATACAAG 60.203 61.111 33.44 12.60 46.81 3.16
6628 9761 2.202824 CTTCGCGGGCCGATACAA 60.203 61.111 33.44 14.26 46.81 2.41
6646 9779 0.453782 GAAAAATTGCGTCCGGACCG 60.454 55.000 28.52 22.76 0.00 4.79
6652 9785 0.319125 TTGCGGGAAAAATTGCGTCC 60.319 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.