AutoCloner

Multiple sequence alignment - TraesCS1A01G128200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G128200	chr1A	100.000	2377	0	0	1	2377	156592825	156595201	0.000000e+00	4390
1	TraesCS1A01G128200	chr1A	95.372	713	30	3	1	711	212958417	212957706	0.000000e+00	1131
2	TraesCS1A01G128200	chr1A	85.996	457	51	7	918	1369	412830029	412829581	5.940000e-131	477
3	TraesCS1A01G128200	chr4A	93.465	1423	80	11	960	2377	199921980	199920566	0.000000e+00	2100
4	TraesCS1A01G128200	chr4A	93.034	646	40	4	1477	2122	199939818	199939178	0.000000e+00	939
5	TraesCS1A01G128200	chr4A	92.880	632	30	10	1376	2007	283102356	283102972	0.000000e+00	904
6	TraesCS1A01G128200	chr4A	95.188	478	20	3	960	1436	199940281	199939806	0.000000e+00	752
7	TraesCS1A01G128200	chr4A	94.558	441	21	2	562	1001	199940721	199940283	0.000000e+00	678
8	TraesCS1A01G128200	chr4A	94.104	441	25	1	562	1001	199922422	199921982	0.000000e+00	669
9	TraesCS1A01G128200	chr4A	92.619	420	28	3	958	1376	694123244	694122827	3.380000e-168	601
10	TraesCS1A01G128200	chr4D	92.453	636	41	6	1376	2010	51017043	51016414	0.000000e+00	902
11	TraesCS1A01G128200	chr6D	92.465	637	37	9	1376	2010	185164974	185165601	0.000000e+00	900
12	TraesCS1A01G128200	chr7D	92.296	636	40	7	1376	2010	472650463	472651090	0.000000e+00	894
13	TraesCS1A01G128200	chr7D	85.393	267	29	6	1	261	395167183	395167445	3.890000e-68	268
14	TraesCS1A01G128200	chr5B	91.824	636	46	6	1376	2010	210329896	210330526	0.000000e+00	881
15	TraesCS1A01G128200	chr5B	85.371	458	53	8	918	1369	304764345	304763896	1.660000e-126	462
16	TraesCS1A01G128200	chr5B	81.648	267	42	5	1	261	453389765	453390030	5.150000e-52	215
17	TraesCS1A01G128200	chr2B	90.938	640	45	11	1376	2014	206559516	206560143	0.000000e+00	848
18	TraesCS1A01G128200	chr2B	90.411	438	39	2	1943	2377	17083243	17083680	7.370000e-160	573
19	TraesCS1A01G128200	chr2B	88.256	281	27	4	562	842	367269997	367270271	4.900000e-87	331
20	TraesCS1A01G128200	chr2B	86.222	225	24	5	51	268	289636359	289636583	1.100000e-58	237
21	TraesCS1A01G128200	chr6B	91.052	637	42	10	1376	2010	336022204	336022827	0.000000e+00	846
22	TraesCS1A01G128200	chr6B	92.252	413	31	1	1966	2377	625834460	625834872	3.400000e-163	584
23	TraesCS1A01G128200	chr6B	90.271	442	36	6	1943	2377	182401799	182402240	2.650000e-159	571
24	TraesCS1A01G128200	chr6B	90.465	430	40	1	1949	2377	565809108	565808679	1.230000e-157	566
25	TraesCS1A01G128200	chr6B	84.810	158	16	4	111	263	627262766	627262920	4.090000e-33	152
26	TraesCS1A01G128200	chr3B	91.628	430	35	1	1949	2377	778211242	778211671	5.660000e-166	593
27	TraesCS1A01G128200	chr3B	90.068	443	40	3	1939	2377	336630443	336630885	2.650000e-159	571
28	TraesCS1A01G128200	chr3B	84.701	451	54	10	925	1369	375456612	375456171	1.010000e-118	436
29	TraesCS1A01G128200	chr4B	92.252	413	30	2	1966	2377	513392832	513392421	3.400000e-163	584
30	TraesCS1A01G128200	chr4B	87.189	281	30	4	562	842	151912584	151912310	4.930000e-82	315
31	TraesCS1A01G128200	chr4B	88.333	180	19	2	1	178	373529253	373529432	5.150000e-52	215
32	TraesCS1A01G128200	chr7B	92.010	413	32	1	1966	2377	525421984	525422396	1.580000e-161	579
33	TraesCS1A01G128200	chr2A	85.153	458	53	9	918	1369	296238666	296238218	2.790000e-124	455
34	TraesCS1A01G128200	chr2D	86.901	313	31	4	1	303	412375721	412376033	2.260000e-90	342
35	TraesCS1A01G128200	chr1B	87.023	262	28	3	6	261	319420761	319420500	8.310000e-75	291
36	TraesCS1A01G128200	chr1B	87.791	172	16	3	95	261	415965854	415965683	1.860000e-46	196
37	TraesCS1A01G128200	chr1B	85.567	97	11	1	156	249	328205224	328205320	5.410000e-17	99

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G128200	chr1A	156592825	156595201	2376	False	4390.000000	4390	100.0000	1	2377	1	chr1A.!!$F1	2376
1	TraesCS1A01G128200	chr1A	212957706	212958417	711	True	1131.000000	1131	95.3720	1	711	1	chr1A.!!$R1	710
2	TraesCS1A01G128200	chr4A	199920566	199922422	1856	True	1384.500000	2100	93.7845	562	2377	2	chr4A.!!$R2	1815
3	TraesCS1A01G128200	chr4A	283102356	283102972	616	False	904.000000	904	92.8800	1376	2007	1	chr4A.!!$F1	631
4	TraesCS1A01G128200	chr4A	199939178	199940721	1543	True	789.666667	939	94.2600	562	2122	3	chr4A.!!$R3	1560
5	TraesCS1A01G128200	chr4D	51016414	51017043	629	True	902.000000	902	92.4530	1376	2010	1	chr4D.!!$R1	634
6	TraesCS1A01G128200	chr6D	185164974	185165601	627	False	900.000000	900	92.4650	1376	2010	1	chr6D.!!$F1	634
7	TraesCS1A01G128200	chr7D	472650463	472651090	627	False	894.000000	894	92.2960	1376	2010	1	chr7D.!!$F2	634
8	TraesCS1A01G128200	chr5B	210329896	210330526	630	False	881.000000	881	91.8240	1376	2010	1	chr5B.!!$F1	634
9	TraesCS1A01G128200	chr2B	206559516	206560143	627	False	848.000000	848	90.9380	1376	2014	1	chr2B.!!$F2	638
10	TraesCS1A01G128200	chr6B	336022204	336022827	623	False	846.000000	846	91.0520	1376	2010	1	chr6B.!!$F2	634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
866	870	0.104671	GTCCTCTCCTCATCTGCTGC	59.895	60.0	0.0	0.0	0.0	5.25	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2091	2160	0.034198	TGAAAACCGCACTCCATCGA	59.966	50.0	0.0	0.0	0.0	3.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	1.544825	GCACCAGTAGGCTGACTCCA	61.545	60.000	0.00	0.00	45.28	3.86
23	24	1.251527	ACCAGTAGGCTGACTCCACG	61.252	60.000	0.00	0.00	45.28	4.94
60	61	1.276705	GTTGTCTCCTTGGTCCTCCTC	59.723	57.143	0.00	0.00	34.23	3.71
170	172	0.322906	CCCCCTCCTCTCTGTTTTGC	60.323	60.000	0.00	0.00	0.00	3.68
178	180	0.250295	TCTCTGTTTTGCAGGTCCGG	60.250	55.000	0.00	0.00	45.08	5.14
294	296	2.355837	TGTGCAGTCCGCGAAGAC	60.356	61.111	8.23	7.68	46.97	3.01
369	372	2.046314	CGTCGGCCCAACCTTGAT	60.046	61.111	0.00	0.00	35.61	2.57
430	433	3.426695	CCTTGACAAATGCATCTTCCGAC	60.427	47.826	0.00	0.00	0.00	4.79
484	487	3.007398	TCCTTTCTTCTCTCTCTTGGTGC	59.993	47.826	0.00	0.00	0.00	5.01
486	489	4.384056	CTTTCTTCTCTCTCTTGGTGCAA	58.616	43.478	0.00	0.00	0.00	4.08
539	542	5.519927	TCGTGTGCACTGTGAAGATATATTG	59.480	40.000	19.41	0.00	0.00	1.90
597	600	5.635417	AGTTTTGCTTTATTCTGCCTCTC	57.365	39.130	0.00	0.00	0.00	3.20
627	630	2.276732	TTTTTCTCTCCTGGGCACTG	57.723	50.000	0.00	0.00	0.00	3.66
687	690	2.607750	TGCTCTCCTGGGTGTCCC	60.608	66.667	0.00	0.00	45.71	4.46
745	748	3.403038	GAGTAGTTGTTGCCATCACTGT	58.597	45.455	0.00	0.00	0.00	3.55
754	757	1.020861	GCCATCACTGTCGTGCATCA	61.021	55.000	0.00	0.00	40.99	3.07
787	791	1.735571	GCTGCCGAGAAATAAAACCGA	59.264	47.619	0.00	0.00	0.00	4.69
851	855	2.078452	CCCCAGTCAATGTGGTCCT	58.922	57.895	0.00	0.00	32.62	3.85
865	869	0.752054	GGTCCTCTCCTCATCTGCTG	59.248	60.000	0.00	0.00	0.00	4.41
866	870	0.104671	GTCCTCTCCTCATCTGCTGC	59.895	60.000	0.00	0.00	0.00	5.25
880	884	1.891919	GCTGCAGGAACAACACCGA	60.892	57.895	17.12	0.00	0.00	4.69
942	946	3.357079	CCTGCGTCCAAGTGGTGC	61.357	66.667	9.45	9.45	37.87	5.01
954	958	3.233980	TGGTGCAGTCCAGCGTCT	61.234	61.111	0.00	0.00	44.80	4.18
963	967	2.094494	CAGTCCAGCGTCTGTAGAACAT	60.094	50.000	6.19	0.00	0.00	2.71
1023	1070	1.439679	GGAAGAAGTACAAGGCCACG	58.560	55.000	5.01	0.00	0.00	4.94
1056	1103	1.571460	GTGCAACTCGGTGCTCTTG	59.429	57.895	8.55	0.00	45.17	3.02
1061	1108	1.745320	AACTCGGTGCTCTTGTCCGT	61.745	55.000	0.00	0.00	43.94	4.69
1063	1110	3.414700	CGGTGCTCTTGTCCGTGC	61.415	66.667	0.00	0.00	39.51	5.34
1090	1137	1.548719	CAGGTGTATTCTGGGACGACA	59.451	52.381	0.00	0.00	0.00	4.35
1094	1141	3.596214	GTGTATTCTGGGACGACAACAT	58.404	45.455	0.00	0.00	0.00	2.71
1104	1151	2.548057	GGACGACAACATCAAAAGCTCA	59.452	45.455	0.00	0.00	0.00	4.26
1207	1254	5.696724	GCTCACATACTCTATTAACGCCATT	59.303	40.000	0.00	0.00	0.00	3.16
1258	1305	8.349568	TCTACAGCTAGACTAGAAACAAATGA	57.650	34.615	13.91	0.00	0.00	2.57
1260	1307	7.897575	ACAGCTAGACTAGAAACAAATGAAG	57.102	36.000	13.91	0.00	0.00	3.02
1332	1380	1.259609	CCGGGTAGTGTTGTCACCTA	58.740	55.000	0.00	0.00	44.83	3.08
1350	1398	2.506231	CCTAAGAAGGGGAAGGGAGTTC	59.494	54.545	0.00	0.00	39.48	3.01
1964	2033	3.980646	AAAAATGTAGTGCGCTTGACA	57.019	38.095	9.73	5.01	0.00	3.58
1995	2064	4.527564	CAGTGCGGTTTTCAGTCTAAAAG	58.472	43.478	0.00	0.00	0.00	2.27
1996	2065	3.003378	AGTGCGGTTTTCAGTCTAAAAGC	59.997	43.478	0.00	0.00	41.28	3.51
1998	2067	3.378742	TGCGGTTTTCAGTCTAAAAGCAA	59.621	39.130	10.66	0.00	43.60	3.91
2002	2071	5.288804	GGTTTTCAGTCTAAAAGCAATGCA	58.711	37.500	8.35	0.00	43.16	3.96
2020	2089	3.131396	TGCAGTTTTCTTCCTCGTCTTC	58.869	45.455	0.00	0.00	0.00	2.87
2030	2099	9.730420	TTTTCTTCCTCGTCTTCAAAAATTTAG	57.270	29.630	0.00	0.00	0.00	1.85
2069	2138	2.167693	CCATGCAGTTCTCTTACCCGTA	59.832	50.000	0.00	0.00	0.00	4.02
2077	2146	3.728076	TCTCTTACCCGTATGATGCAC	57.272	47.619	0.00	0.00	0.00	4.57
2091	2160	2.035704	TGATGCACTGCGGTTTTTCATT	59.964	40.909	0.00	0.00	0.00	2.57
2114	2183	0.878523	TGGAGTGCGGTTTTCAGTCG	60.879	55.000	0.00	0.00	35.33	4.18
2125	2194	3.683340	GGTTTTCAGTCGGATGAAGTACC	59.317	47.826	14.73	14.73	40.16	3.34
2143	2212	1.296056	CCCACGTCGATTTGGGTGTC	61.296	60.000	21.13	0.00	46.74	3.67
2145	2214	0.942410	CACGTCGATTTGGGTGTCGT	60.942	55.000	0.00	0.00	38.85	4.34
2155	2224	2.404923	TGGGTGTCGTGAAAAACAGA	57.595	45.000	0.00	0.00	0.00	3.41
2163	2232	1.931172	CGTGAAAAACAGAGTGTCCGT	59.069	47.619	0.00	0.00	0.00	4.69
2170	2239	5.432885	AAAACAGAGTGTCCGTATTTTGG	57.567	39.130	0.00	0.00	0.00	3.28
2174	2243	5.613329	ACAGAGTGTCCGTATTTTGGTAAA	58.387	37.500	0.00	0.00	0.00	2.01
2177	2246	7.094933	ACAGAGTGTCCGTATTTTGGTAAATTC	60.095	37.037	0.00	0.00	35.61	2.17
2195	2264	8.517056	GGTAAATTCGAAATTCCTCTTAAACCA	58.483	33.333	0.00	0.00	0.00	3.67
2217	2286	9.660180	AACCATAAAGAATTAGAGAGAGTGTTC	57.340	33.333	0.00	0.00	0.00	3.18
2248	2317	0.317938	GTTGCGCCTCGTCGATATCT	60.318	55.000	4.18	0.00	0.00	1.98
2260	2329	3.518590	GTCGATATCTTTCCAACGGTGT	58.481	45.455	0.00	0.00	0.00	4.16
2267	2337	7.650504	CGATATCTTTCCAACGGTGTATCTTTA	59.349	37.037	0.00	0.00	0.00	1.85
2276	2346	7.066525	TCCAACGGTGTATCTTTAAATCATTCC	59.933	37.037	0.00	0.00	0.00	3.01
2284	2354	3.621268	TCTTTAAATCATTCCGACCAGCG	59.379	43.478	0.00	0.00	40.47	5.18
2300	2370	5.012328	ACCAGCGGTTTGTAAAAATTTCA	57.988	34.783	0.00	0.00	27.29	2.69
2309	2379	7.950496	CGGTTTGTAAAAATTTCACGAAAAACA	59.050	29.630	13.44	0.00	33.56	2.83
2310	2380	9.595357	GGTTTGTAAAAATTTCACGAAAAACAA	57.405	25.926	13.44	1.39	33.56	2.83
2320	2390	0.318614	CGAAAAACAACCGCTGCCAT	60.319	50.000	0.00	0.00	0.00	4.40
2323	2393	0.318614	AAAACAACCGCTGCCATTCG	60.319	50.000	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
8	9	2.184579	GCCGTGGAGTCAGCCTAC	59.815	66.667	0.00	0.00	0.00	3.18
9	10	3.075005	GGCCGTGGAGTCAGCCTA	61.075	66.667	0.00	0.00	42.34	3.93
60	61	1.913762	ACCACCGGAGAGGACAAGG	60.914	63.158	9.46	0.00	45.00	3.61
117	118	2.573009	CAGGGGGAAAAGATGGCAAAAT	59.427	45.455	0.00	0.00	0.00	1.82
170	172	2.202987	GATGAGCTGCCGGACCTG	60.203	66.667	5.05	0.00	0.00	4.00
178	180	0.250209	ATCGATGTGGGATGAGCTGC	60.250	55.000	0.00	0.00	0.00	5.25
294	296	2.047274	AAGTCGTCATGCACCCCG	60.047	61.111	0.00	0.00	0.00	5.73
369	372	0.107752	TCATGTGGCGCATCAAGCTA	60.108	50.000	11.25	0.00	42.61	3.32
383	386	0.620556	ACCGGAGCTCCAATTCATGT	59.379	50.000	31.67	13.31	35.14	3.21
442	445	5.431765	AGGATGAAGACAATAATTGCTCGT	58.568	37.500	0.00	0.00	0.00	4.18
484	487	0.664761	CGGAGGGCTGCAATGTATTG	59.335	55.000	0.50	0.28	40.66	1.90
486	489	4.885426	CGGAGGGCTGCAATGTAT	57.115	55.556	0.50	0.00	0.00	2.29
502	505	1.956170	ACACGAAAGAGCTGCACCG	60.956	57.895	1.02	0.00	0.00	4.94
509	512	0.041839	CACAGTGCACACGAAAGAGC	60.042	55.000	21.04	0.00	36.20	4.09
597	600	7.390162	GCCCAGGAGAGAAAAATATATCTTCAG	59.610	40.741	9.16	0.00	0.00	3.02
627	630	3.248029	CACTCGTTCAGGTGCTGC	58.752	61.111	0.00	0.00	0.00	5.25
687	690	0.105778	GGCTACCAGCTGCTTCTAGG	59.894	60.000	8.66	0.00	41.99	3.02
787	791	1.830587	TTGCCTCCATGTCGAGCAGT	61.831	55.000	0.00	0.00	0.00	4.40
851	855	0.325016	TCCTGCAGCAGATGAGGAGA	60.325	55.000	24.90	7.58	33.14	3.71
865	869	1.941812	CTGTCGGTGTTGTTCCTGC	59.058	57.895	0.00	0.00	0.00	4.85
866	870	0.813610	TGCTGTCGGTGTTGTTCCTG	60.814	55.000	0.00	0.00	0.00	3.86
902	906	2.981560	GCCACACCATGAACCAGCG	61.982	63.158	0.00	0.00	0.00	5.18
942	946	1.269723	TGTTCTACAGACGCTGGACTG	59.730	52.381	10.80	0.00	40.96	3.51
954	958	3.677148	GCTAGTGAGCTGCATGTTCTACA	60.677	47.826	1.02	0.00	45.98	2.74
1001	1048	0.696501	GGCCTTGTACTTCTTCCCCA	59.303	55.000	0.00	0.00	0.00	4.96
1005	1052	0.796927	GCGTGGCCTTGTACTTCTTC	59.203	55.000	3.32	0.00	0.00	2.87
1023	1070	2.639327	GCACCACTTGGACATGGGC	61.639	63.158	1.14	0.00	40.59	5.36
1063	1110	2.489329	CCCAGAATACACCTGCAAACTG	59.511	50.000	0.00	0.00	0.00	3.16
1081	1128	1.606668	GCTTTTGATGTTGTCGTCCCA	59.393	47.619	0.00	0.00	0.00	4.37
1090	1137	3.070018	CCGAGACTGAGCTTTTGATGTT	58.930	45.455	0.00	0.00	0.00	2.71
1094	1141	1.048601	ACCCGAGACTGAGCTTTTGA	58.951	50.000	0.00	0.00	0.00	2.69
1104	1151	1.077625	AAGGAGCTCACCCGAGACT	59.922	57.895	17.19	0.00	42.34	3.24
1207	1254	7.716799	AACATAGGCACAAAAATTCTGGATA	57.283	32.000	0.00	0.00	0.00	2.59
1332	1380	1.988846	CTGAACTCCCTTCCCCTTCTT	59.011	52.381	0.00	0.00	0.00	2.52
1350	1398	3.362295	CACCGTGTTCATGTTTTGTCTG	58.638	45.455	0.00	0.00	0.00	3.51
1517	1569	6.016610	ACCGCAAAAGTTTTCTTAATGAGCTA	60.017	34.615	0.00	0.00	39.48	3.32
1808	1869	3.065655	GTGCAGCACATTGGCATTTTTA	58.934	40.909	21.22	0.00	40.05	1.52
1822	1886	4.619973	CATTTTTAGACCAAAGTGCAGCA	58.380	39.130	0.00	0.00	0.00	4.41
1824	1888	4.619973	TGCATTTTTAGACCAAAGTGCAG	58.380	39.130	11.06	0.00	41.08	4.41
1859	1926	2.161855	TCAAAGTGGATCGCATTTGCT	58.838	42.857	0.51	0.00	39.32	3.91
1869	1936	7.503566	TGAACTTCTTTCAAGATCAAAGTGGAT	59.496	33.333	0.00	0.00	41.51	3.41
1964	2033	0.250467	AAACCGCACTGCATCAGACT	60.250	50.000	1.11	0.00	35.18	3.24
1995	2064	2.030805	ACGAGGAAGAAAACTGCATTGC	60.031	45.455	0.46	0.46	0.00	3.56
1996	2065	3.499918	AGACGAGGAAGAAAACTGCATTG	59.500	43.478	0.00	0.00	0.00	2.82
1998	2067	3.409026	AGACGAGGAAGAAAACTGCAT	57.591	42.857	0.00	0.00	0.00	3.96
2002	2071	6.753107	TTTTTGAAGACGAGGAAGAAAACT	57.247	33.333	0.00	0.00	0.00	2.66
2053	2122	4.051922	GCATCATACGGGTAAGAGAACTG	58.948	47.826	0.00	0.00	0.00	3.16
2054	2123	3.704566	TGCATCATACGGGTAAGAGAACT	59.295	43.478	0.00	0.00	0.00	3.01
2069	2138	1.612950	TGAAAAACCGCAGTGCATCAT	59.387	42.857	16.83	0.00	0.00	2.45
2077	2146	2.161410	TCCATCGAATGAAAAACCGCAG	59.839	45.455	0.00	0.00	0.00	5.18
2091	2160	0.034198	TGAAAACCGCACTCCATCGA	59.966	50.000	0.00	0.00	0.00	3.59
2114	2183	0.813184	TCGACGTGGGTACTTCATCC	59.187	55.000	0.00	0.00	0.00	3.51
2125	2194	1.623081	CGACACCCAAATCGACGTGG	61.623	60.000	8.90	8.90	40.86	4.94
2143	2212	1.931172	ACGGACACTCTGTTTTTCACG	59.069	47.619	0.00	0.00	30.35	4.35
2145	2214	6.459024	CCAAAATACGGACACTCTGTTTTTCA	60.459	38.462	0.00	0.00	36.40	2.69
2155	2224	5.933463	TCGAATTTACCAAAATACGGACACT	59.067	36.000	0.00	0.00	34.12	3.55
2217	2286	3.492313	GAGGCGCAACTTTTTCATGTAG	58.508	45.455	10.83	0.00	0.00	2.74
2248	2317	7.747155	TGATTTAAAGATACACCGTTGGAAA	57.253	32.000	0.00	0.00	0.00	3.13
2260	2329	5.465390	CGCTGGTCGGAATGATTTAAAGATA	59.535	40.000	0.00	0.00	33.78	1.98
2276	2346	2.759538	TTTTTACAAACCGCTGGTCG	57.240	45.000	0.69	0.00	33.12	4.79
2284	2354	9.595357	TTGTTTTTCGTGAAATTTTTACAAACC	57.405	25.926	12.10	0.14	0.00	3.27
2300	2370	1.065109	GGCAGCGGTTGTTTTTCGT	59.935	52.632	0.00	0.00	0.00	3.85
2309	2379	3.118454	CGACGAATGGCAGCGGTT	61.118	61.111	15.43	0.00	0.00	4.44
2310	2380	4.373116	ACGACGAATGGCAGCGGT	62.373	61.111	15.43	2.46	0.00	5.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.