Multiple sequence alignment - TraesCS1A01G127900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G127900 chr1A 100.000 5381 0 0 1 5381 155691476 155696856 0.000000e+00 9937.0
1 TraesCS1A01G127900 chr1A 100.000 576 0 0 5793 6368 155697268 155697843 0.000000e+00 1064.0
2 TraesCS1A01G127900 chr1A 100.000 38 0 0 4557 4594 155695910 155695873 3.190000e-08 71.3
3 TraesCS1A01G127900 chr1A 100.000 38 0 0 4398 4435 155696069 155696032 3.190000e-08 71.3
4 TraesCS1A01G127900 chr1D 95.345 3437 68 22 426 3829 137442270 137438893 0.000000e+00 5376.0
5 TraesCS1A01G127900 chr1D 98.958 480 5 0 4902 5381 137437925 137437446 0.000000e+00 859.0
6 TraesCS1A01G127900 chr1D 93.027 588 22 10 5795 6368 137437399 137436817 0.000000e+00 841.0
7 TraesCS1A01G127900 chr1D 98.643 442 4 1 3950 4391 137438907 137438468 0.000000e+00 782.0
8 TraesCS1A01G127900 chr1D 99.010 404 4 0 4450 4853 137438328 137437925 0.000000e+00 725.0
9 TraesCS1A01G127900 chr1D 81.733 427 41 15 1 392 137443826 137443402 7.960000e-84 322.0
10 TraesCS1A01G127900 chr1D 88.732 71 7 1 356 425 137442899 137442829 1.140000e-12 86.1
11 TraesCS1A01G127900 chr1D 100.000 38 0 0 4398 4435 137438184 137438221 3.190000e-08 71.3
12 TraesCS1A01G127900 chr1B 95.488 2438 73 13 453 2881 209135186 209132777 0.000000e+00 3858.0
13 TraesCS1A01G127900 chr1B 95.556 1305 34 9 3097 4391 209132380 209131090 0.000000e+00 2067.0
14 TraesCS1A01G127900 chr1B 98.283 932 15 1 4450 5381 209130953 209130023 0.000000e+00 1631.0
15 TraesCS1A01G127900 chr1B 90.893 582 15 7 5795 6368 209129977 209129426 0.000000e+00 747.0
16 TraesCS1A01G127900 chr1B 96.804 219 6 1 2882 3099 209132691 209132473 1.300000e-96 364.0
17 TraesCS1A01G127900 chr1B 100.000 38 0 0 4398 4435 209130810 209130847 3.190000e-08 71.3
18 TraesCS1A01G127900 chr1B 96.970 33 0 1 1375 1407 419983975 419984006 3.000000e-03 54.7
19 TraesCS1A01G127900 chr3D 87.975 158 19 0 4094 4251 130930455 130930612 3.030000e-43 187.0
20 TraesCS1A01G127900 chr3D 94.444 36 0 2 1373 1407 609299509 609299475 3.000000e-03 54.7
21 TraesCS1A01G127900 chr3B 87.975 158 19 0 4094 4251 187349623 187349780 3.030000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G127900 chr1A 155691476 155697843 6367 False 5500.500000 9937 100.000000 1 6368 2 chr1A.!!$F1 6367
1 TraesCS1A01G127900 chr1D 137436817 137443826 7009 True 1284.442857 5376 93.635429 1 6368 7 chr1D.!!$R1 6367
2 TraesCS1A01G127900 chr1B 209129426 209135186 5760 True 1733.400000 3858 95.404800 453 6368 5 chr1B.!!$R1 5915

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.032952 TGTCGGTTGAAGAGGAACGG 59.967 55.000 0.0 0.0 0.00 4.44 F
320 334 0.391927 TTTTGATGTACCTCGGCCCG 60.392 55.000 0.0 0.0 0.00 6.13 F
536 1669 0.794473 GGCTTACGGGAAAAGACGTG 59.206 55.000 0.0 0.0 43.93 4.49 F
783 1921 1.068921 GAGCGAGCCATCTCTTCCC 59.931 63.158 0.0 0.0 37.19 3.97 F
785 1923 1.068921 GCGAGCCATCTCTTCCCTC 59.931 63.158 0.0 0.0 37.19 4.30 F
814 1952 1.213182 GGTTCCAATTCCCTCCTCCTC 59.787 57.143 0.0 0.0 0.00 3.71 F
1894 3045 1.272490 TGTATGTGCTAGGCTATCGGC 59.728 52.381 0.0 0.0 40.90 5.54 F
2150 3310 2.105477 TGGCAGAATAATGCTCCTCCTC 59.895 50.000 0.0 0.0 45.75 3.71 F
2253 3413 3.461831 CCTCCACCCCCTATGATAAACAA 59.538 47.826 0.0 0.0 0.00 2.83 F
3279 4620 3.758554 AGATTGTGAGTTTACCACCATGC 59.241 43.478 0.0 0.0 33.80 4.06 F
4885 6329 2.656947 AAAGCTCTACAAACTGCCCA 57.343 45.000 0.0 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 2963 1.338105 TGAGCCGTGACAATTGAGAGG 60.338 52.381 13.59 10.55 0.00 3.69 R
1816 2964 2.084610 TGAGCCGTGACAATTGAGAG 57.915 50.000 13.59 0.41 0.00 3.20 R
2148 3308 2.616634 CACATGATCAGGTGGAGGAG 57.383 55.000 28.43 5.79 39.22 3.69 R
2253 3413 3.168528 AACCTGACCCACCGCTGT 61.169 61.111 0.00 0.00 0.00 4.40 R
2717 3877 9.601217 GATGTGGGATAGATGTATTTATACACC 57.399 37.037 4.79 0.00 45.11 4.16 R
2770 3930 9.956720 ACTTTTCTTTGTGAAATGTGAATAGAG 57.043 29.630 8.26 0.00 45.36 2.43 R
3126 4467 2.660572 TCAGCAACAAAACTTAGGGCA 58.339 42.857 0.00 0.00 0.00 5.36 R
4112 5474 2.622436 AGCTTTCCAGAAGACGCATAC 58.378 47.619 0.00 0.00 0.00 2.39 R
4278 5640 9.179909 CTTATCTAGTCGAAGTATCATGGGTAT 57.820 37.037 0.00 0.00 0.00 2.73 R
5061 6554 1.343465 TCCAAAGAGACGTCACCTTCC 59.657 52.381 19.50 0.00 0.00 3.46 R
6303 7812 0.035534 TCACACACACACCTGCACTT 60.036 50.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.011482 CCCAAAGTTAATCTCTATTCTTCCACG 59.989 40.741 0.00 0.00 0.00 4.94
51 52 7.123098 TCCACGAGTAGGTAGATGATAAAACAA 59.877 37.037 0.00 0.00 0.00 2.83
94 95 6.778834 TGATACCTAACATAACCGAGAACA 57.221 37.500 0.00 0.00 0.00 3.18
102 103 2.983402 TAACCGAGAACAGAGTGTCG 57.017 50.000 0.00 0.00 0.00 4.35
117 118 0.032952 TGTCGGTTGAAGAGGAACGG 59.967 55.000 0.00 0.00 0.00 4.44
119 120 1.375523 CGGTTGAAGAGGAACGGGG 60.376 63.158 0.00 0.00 0.00 5.73
120 121 1.823169 CGGTTGAAGAGGAACGGGGA 61.823 60.000 0.00 0.00 0.00 4.81
122 123 0.685660 GTTGAAGAGGAACGGGGAGT 59.314 55.000 0.00 0.00 0.00 3.85
125 126 1.900545 GAAGAGGAACGGGGAGTGGG 61.901 65.000 0.00 0.00 0.00 4.61
129 143 1.914764 GGAACGGGGAGTGGGTGTA 60.915 63.158 0.00 0.00 0.00 2.90
135 149 1.875488 GGGGAGTGGGTGTACTATGT 58.125 55.000 0.00 0.00 0.00 2.29
142 156 1.903860 TGGGTGTACTATGTGTGTCCC 59.096 52.381 0.00 0.00 35.93 4.46
179 193 4.131088 GGCGGAGGTCCTGACGAC 62.131 72.222 14.94 9.34 41.15 4.34
188 202 1.079405 TCCTGACGACCGCAAATCC 60.079 57.895 0.00 0.00 0.00 3.01
198 212 2.076863 ACCGCAAATCCTCTTCTTTCG 58.923 47.619 0.00 0.00 0.00 3.46
205 219 5.570589 GCAAATCCTCTTCTTTCGATTTGTG 59.429 40.000 17.76 1.31 46.86 3.33
206 220 6.568462 GCAAATCCTCTTCTTTCGATTTGTGA 60.568 38.462 17.76 0.00 46.86 3.58
210 224 7.510549 TCCTCTTCTTTCGATTTGTGAAAAT 57.489 32.000 0.00 0.00 35.11 1.82
212 226 8.413229 TCCTCTTCTTTCGATTTGTGAAAATTT 58.587 29.630 0.00 0.00 35.11 1.82
214 228 9.236691 CTCTTCTTTCGATTTGTGAAAATTTGA 57.763 29.630 0.00 0.00 35.11 2.69
234 248 5.097742 TGAACAACGATAAGACCATGGAT 57.902 39.130 21.47 0.00 0.00 3.41
238 252 4.081142 ACAACGATAAGACCATGGATGACA 60.081 41.667 21.47 0.00 0.00 3.58
248 262 3.964688 ACCATGGATGACATTTGATGCAT 59.035 39.130 21.47 0.00 37.84 3.96
251 265 4.642445 TGGATGACATTTGATGCATGAC 57.358 40.909 2.46 0.00 30.80 3.06
260 274 3.557577 TTGATGCATGACGTTGAAAGG 57.442 42.857 2.46 0.00 0.00 3.11
261 275 1.811965 TGATGCATGACGTTGAAAGGG 59.188 47.619 2.46 0.00 0.00 3.95
283 297 2.979814 AAAACTTCAAACCCTGTGGC 57.020 45.000 0.00 0.00 33.59 5.01
291 305 1.334384 AAACCCTGTGGCCCAAACAC 61.334 55.000 0.00 0.00 39.26 3.32
305 319 3.905339 CAAACACTTGGAAGCGTTTTG 57.095 42.857 3.35 0.08 38.73 2.44
311 325 4.219033 CACTTGGAAGCGTTTTGATGTAC 58.781 43.478 0.00 0.00 0.00 2.90
312 326 3.252458 ACTTGGAAGCGTTTTGATGTACC 59.748 43.478 0.00 0.00 0.00 3.34
313 327 3.134574 TGGAAGCGTTTTGATGTACCT 57.865 42.857 0.00 0.00 0.00 3.08
316 330 1.722011 AGCGTTTTGATGTACCTCGG 58.278 50.000 0.00 0.00 0.00 4.63
318 332 0.725117 CGTTTTGATGTACCTCGGCC 59.275 55.000 0.00 0.00 0.00 6.13
319 333 1.092348 GTTTTGATGTACCTCGGCCC 58.908 55.000 0.00 0.00 0.00 5.80
320 334 0.391927 TTTTGATGTACCTCGGCCCG 60.392 55.000 0.00 0.00 0.00 6.13
321 335 2.246761 TTTGATGTACCTCGGCCCGG 62.247 60.000 1.90 0.00 0.00 5.73
338 370 1.269621 CCGGCGATCCTTCTTATCGTT 60.270 52.381 9.30 0.00 46.15 3.85
341 373 3.060473 CGGCGATCCTTCTTATCGTTTTC 60.060 47.826 0.00 0.00 46.15 2.29
349 381 5.932303 TCCTTCTTATCGTTTTCTCCAACTG 59.068 40.000 0.00 0.00 0.00 3.16
356 388 2.210116 GTTTTCTCCAACTGCGACTCA 58.790 47.619 0.00 0.00 0.00 3.41
358 390 3.953712 TTTCTCCAACTGCGACTCATA 57.046 42.857 0.00 0.00 0.00 2.15
361 393 4.471904 TCTCCAACTGCGACTCATAATT 57.528 40.909 0.00 0.00 0.00 1.40
362 394 4.433615 TCTCCAACTGCGACTCATAATTC 58.566 43.478 0.00 0.00 0.00 2.17
487 1620 1.614903 CGGGGTCCGCATGTAGTATAA 59.385 52.381 6.75 0.00 41.17 0.98
536 1669 0.794473 GGCTTACGGGAAAAGACGTG 59.206 55.000 0.00 0.00 43.93 4.49
587 1720 3.119814 CGCGGCATACATACAGATAGAGT 60.120 47.826 0.00 0.00 0.00 3.24
591 1724 5.449314 CGGCATACATACAGATAGAGTAGGC 60.449 48.000 0.00 0.00 40.51 3.93
592 1725 5.419155 GGCATACATACAGATAGAGTAGGCA 59.581 44.000 9.27 0.00 42.30 4.75
593 1726 6.071334 GGCATACATACAGATAGAGTAGGCAA 60.071 42.308 9.27 0.00 42.30 4.52
594 1727 7.378966 GCATACATACAGATAGAGTAGGCAAA 58.621 38.462 0.00 0.00 40.80 3.68
595 1728 7.872993 GCATACATACAGATAGAGTAGGCAAAA 59.127 37.037 0.00 0.00 40.80 2.44
612 1745 3.663815 AACCCCAACGCAACCACCA 62.664 57.895 0.00 0.00 0.00 4.17
647 1784 1.301716 CCACTGACAACCTGACCCG 60.302 63.158 0.00 0.00 0.00 5.28
781 1919 1.299773 CCGAGCGAGCCATCTCTTC 60.300 63.158 0.00 0.00 37.19 2.87
782 1920 1.299773 CGAGCGAGCCATCTCTTCC 60.300 63.158 0.00 0.00 37.19 3.46
783 1921 1.068921 GAGCGAGCCATCTCTTCCC 59.931 63.158 0.00 0.00 37.19 3.97
784 1922 1.382420 AGCGAGCCATCTCTTCCCT 60.382 57.895 0.00 0.00 37.19 4.20
785 1923 1.068921 GCGAGCCATCTCTTCCCTC 59.931 63.158 0.00 0.00 37.19 4.30
814 1952 1.213182 GGTTCCAATTCCCTCCTCCTC 59.787 57.143 0.00 0.00 0.00 3.71
865 2003 7.651704 GCACTACTACTACTACTACTGACTACC 59.348 44.444 0.00 0.00 0.00 3.18
1270 2417 3.382832 CCTCGGACACGCCCTCTT 61.383 66.667 0.00 0.00 40.69 2.85
1766 2914 1.855978 TCGTTGACGTGTAAGCACTTG 59.144 47.619 0.00 0.00 43.16 3.16
1815 2963 6.474751 CCGCACCTGAATTTTACTAGTAGTAC 59.525 42.308 9.62 0.00 28.93 2.73
1816 2964 6.474751 CGCACCTGAATTTTACTAGTAGTACC 59.525 42.308 9.62 0.00 28.93 3.34
1894 3045 1.272490 TGTATGTGCTAGGCTATCGGC 59.728 52.381 0.00 0.00 40.90 5.54
1902 3053 2.862921 GCTAGGCTATCGGCAGTGTTAC 60.863 54.545 0.00 0.00 44.01 2.50
1958 3115 8.349983 GTTGTCTGTGTTAGGTGTCATAATTTT 58.650 33.333 0.00 0.00 0.00 1.82
2027 3184 4.058124 TGTTGCATCTCGGTATCTTATGC 58.942 43.478 0.00 0.00 42.52 3.14
2067 3224 3.924073 ACTTGCAAAACGGAAACACTTTC 59.076 39.130 0.00 0.00 38.94 2.62
2148 3308 2.645838 TGGCAGAATAATGCTCCTCC 57.354 50.000 0.00 0.00 45.75 4.30
2149 3309 2.130193 TGGCAGAATAATGCTCCTCCT 58.870 47.619 0.00 0.00 45.75 3.69
2150 3310 2.105477 TGGCAGAATAATGCTCCTCCTC 59.895 50.000 0.00 0.00 45.75 3.71
2253 3413 3.461831 CCTCCACCCCCTATGATAAACAA 59.538 47.826 0.00 0.00 0.00 2.83
2614 3774 6.942576 AGAGGTTGCTTGTATATGAGTTTGTT 59.057 34.615 0.00 0.00 0.00 2.83
2681 3841 6.753180 TGCCTCATTGATCTATCTTCTGTAC 58.247 40.000 0.00 0.00 0.00 2.90
2717 3877 7.901029 TCCATGAGACTTTAGATAATAGCTGG 58.099 38.462 0.00 0.00 0.00 4.85
2770 3930 8.813282 CCATAAAACAACAACTTTAGAAACACC 58.187 33.333 0.00 0.00 0.00 4.16
2917 4162 6.882610 TGTCATTAGAAACTCTGCATTTGT 57.117 33.333 0.00 0.00 0.00 2.83
3118 4459 9.920133 ATGCTACAAGTTAGTCACTATATGATG 57.080 33.333 0.00 0.00 40.28 3.07
3279 4620 3.758554 AGATTGTGAGTTTACCACCATGC 59.241 43.478 0.00 0.00 33.80 4.06
3335 4696 7.178805 AGTGTAACCAAAAACAGGTCCTTAAAA 59.821 33.333 0.00 0.00 38.76 1.52
3441 4802 7.787725 AAATTCGAAGCTAAGGTAGGTTATG 57.212 36.000 3.35 0.00 45.61 1.90
3468 4829 6.725364 TCTCCATTTCTGCTTCCTTTCTATT 58.275 36.000 0.00 0.00 0.00 1.73
3851 5212 5.250200 TGTTACCGAGCCATTTAAATCTGT 58.750 37.500 0.00 0.00 0.00 3.41
4112 5474 6.010850 TGGTATTAGGTATCTAGCACCAGAG 58.989 44.000 11.81 0.00 36.79 3.35
4278 5640 9.796180 TTTTAATAGCCTACTTAAGTTTGGTGA 57.204 29.630 14.49 9.02 0.00 4.02
4427 5789 8.856490 AAATTGACTACAAAGAAATGACACAC 57.144 30.769 0.00 0.00 39.54 3.82
4428 5790 6.993786 TTGACTACAAAGAAATGACACACA 57.006 33.333 0.00 0.00 32.73 3.72
4432 5794 6.112734 ACTACAAAGAAATGACACACAGACA 58.887 36.000 0.00 0.00 0.00 3.41
4433 5795 5.895636 ACAAAGAAATGACACACAGACAA 57.104 34.783 0.00 0.00 0.00 3.18
4435 5797 6.267817 ACAAAGAAATGACACACAGACAATG 58.732 36.000 0.00 0.00 0.00 2.82
4436 5798 6.095300 ACAAAGAAATGACACACAGACAATGA 59.905 34.615 0.00 0.00 0.00 2.57
4438 5800 6.492007 AGAAATGACACACAGACAATGATC 57.508 37.500 0.00 0.00 0.00 2.92
4440 5802 6.657966 AGAAATGACACACAGACAATGATCAT 59.342 34.615 1.18 1.18 31.88 2.45
4441 5803 6.432607 AATGACACACAGACAATGATCATC 57.567 37.500 9.06 0.00 30.92 2.92
4443 5805 6.284891 TGACACACAGACAATGATCATCTA 57.715 37.500 9.06 0.00 0.00 1.98
4444 5806 6.101997 TGACACACAGACAATGATCATCTAC 58.898 40.000 9.06 3.47 0.00 2.59
4446 5808 6.104665 ACACACAGACAATGATCATCTACAG 58.895 40.000 9.06 2.49 0.00 2.74
4447 5809 6.071165 ACACACAGACAATGATCATCTACAGA 60.071 38.462 9.06 0.00 0.00 3.41
4849 6293 4.177026 CCTCGAATGAGTCAGGTAACTTG 58.823 47.826 0.00 0.00 42.83 3.16
4850 6294 4.322049 CCTCGAATGAGTCAGGTAACTTGT 60.322 45.833 0.00 0.00 42.83 3.16
4851 6295 5.105877 CCTCGAATGAGTCAGGTAACTTGTA 60.106 44.000 0.00 0.00 42.83 2.41
4852 6296 6.405953 CCTCGAATGAGTCAGGTAACTTGTAT 60.406 42.308 0.00 0.00 42.83 2.29
4853 6297 7.036220 CTCGAATGAGTCAGGTAACTTGTATT 58.964 38.462 0.00 0.00 40.90 1.89
4854 6298 7.545965 CTCGAATGAGTCAGGTAACTTGTATTT 59.454 37.037 0.00 0.00 40.90 1.40
4865 6309 7.625828 GGTAACTTGTATTTCAGTATGCCTT 57.374 36.000 0.00 0.00 34.76 4.35
4866 6310 8.726870 GGTAACTTGTATTTCAGTATGCCTTA 57.273 34.615 0.00 0.00 34.76 2.69
4867 6311 9.169592 GGTAACTTGTATTTCAGTATGCCTTAA 57.830 33.333 0.00 0.00 34.76 1.85
4870 6314 7.762382 ACTTGTATTTCAGTATGCCTTAAAGC 58.238 34.615 0.00 0.00 34.76 3.51
4871 6315 7.611855 ACTTGTATTTCAGTATGCCTTAAAGCT 59.388 33.333 0.00 0.00 34.76 3.74
4872 6316 7.553881 TGTATTTCAGTATGCCTTAAAGCTC 57.446 36.000 0.00 0.00 34.76 4.09
4873 6317 7.338710 TGTATTTCAGTATGCCTTAAAGCTCT 58.661 34.615 0.00 0.00 34.76 4.09
4874 6318 8.482943 TGTATTTCAGTATGCCTTAAAGCTCTA 58.517 33.333 0.00 0.00 34.76 2.43
4875 6319 7.793927 ATTTCAGTATGCCTTAAAGCTCTAC 57.206 36.000 0.00 0.38 34.76 2.59
4876 6320 5.932619 TCAGTATGCCTTAAAGCTCTACA 57.067 39.130 0.00 0.00 34.76 2.74
4877 6321 6.294361 TCAGTATGCCTTAAAGCTCTACAA 57.706 37.500 0.00 0.00 34.76 2.41
4878 6322 6.707290 TCAGTATGCCTTAAAGCTCTACAAA 58.293 36.000 0.00 0.00 34.76 2.83
4879 6323 6.594159 TCAGTATGCCTTAAAGCTCTACAAAC 59.406 38.462 0.00 0.00 34.76 2.93
4880 6324 6.595716 CAGTATGCCTTAAAGCTCTACAAACT 59.404 38.462 0.00 0.00 0.00 2.66
4881 6325 5.886960 ATGCCTTAAAGCTCTACAAACTG 57.113 39.130 0.00 0.00 0.00 3.16
4882 6326 3.502211 TGCCTTAAAGCTCTACAAACTGC 59.498 43.478 0.00 0.00 0.00 4.40
4883 6327 3.119814 GCCTTAAAGCTCTACAAACTGCC 60.120 47.826 0.00 0.00 0.00 4.85
4884 6328 3.440522 CCTTAAAGCTCTACAAACTGCCC 59.559 47.826 0.00 0.00 0.00 5.36
4885 6329 2.656947 AAAGCTCTACAAACTGCCCA 57.343 45.000 0.00 0.00 0.00 5.36
4886 6330 2.887151 AAGCTCTACAAACTGCCCAT 57.113 45.000 0.00 0.00 0.00 4.00
4887 6331 4.301072 AAAGCTCTACAAACTGCCCATA 57.699 40.909 0.00 0.00 0.00 2.74
4888 6332 3.550437 AGCTCTACAAACTGCCCATAG 57.450 47.619 0.00 0.00 0.00 2.23
4889 6333 3.107601 AGCTCTACAAACTGCCCATAGA 58.892 45.455 0.00 0.00 0.00 1.98
4890 6334 3.713764 AGCTCTACAAACTGCCCATAGAT 59.286 43.478 0.00 0.00 0.00 1.98
4891 6335 3.812053 GCTCTACAAACTGCCCATAGATG 59.188 47.826 0.00 0.00 0.00 2.90
4892 6336 3.808728 TCTACAAACTGCCCATAGATGC 58.191 45.455 0.00 0.00 0.00 3.91
4893 6337 2.814805 ACAAACTGCCCATAGATGCT 57.185 45.000 0.00 0.00 0.00 3.79
4894 6338 3.091633 ACAAACTGCCCATAGATGCTT 57.908 42.857 0.00 0.00 0.00 3.91
4895 6339 4.235079 ACAAACTGCCCATAGATGCTTA 57.765 40.909 0.00 0.00 0.00 3.09
4896 6340 4.796606 ACAAACTGCCCATAGATGCTTAT 58.203 39.130 0.00 0.00 0.00 1.73
4897 6341 4.823989 ACAAACTGCCCATAGATGCTTATC 59.176 41.667 0.00 0.00 0.00 1.75
4900 6344 3.071602 ACTGCCCATAGATGCTTATCGTT 59.928 43.478 0.00 0.00 0.00 3.85
5018 6511 4.635765 TGTGGCTACAAGTGAGAATTATGC 59.364 41.667 0.00 0.00 32.88 3.14
5061 6554 2.268076 CCAGGTTGTTCGGGCCTTG 61.268 63.158 0.84 0.00 0.00 3.61
5947 7442 8.846943 TGTAATTCAAAGAGCTAATTGAGTGA 57.153 30.769 12.03 2.64 36.93 3.41
6004 7504 6.146673 AGAGTAACCCAACGATTCTTTTTACG 59.853 38.462 0.00 0.00 0.00 3.18
6071 7571 6.552008 CCAACTTACATATCATTATGGGGGT 58.448 40.000 0.00 0.00 39.69 4.95
6072 7572 6.659242 CCAACTTACATATCATTATGGGGGTC 59.341 42.308 0.00 0.00 39.69 4.46
6088 7597 3.307199 GGGGGTCGTCTTATCTTGTTGAA 60.307 47.826 0.00 0.00 0.00 2.69
6089 7598 4.320870 GGGGTCGTCTTATCTTGTTGAAA 58.679 43.478 0.00 0.00 0.00 2.69
6177 7686 3.095886 GTTCTTCGGAAGCACGGAACG 62.096 57.143 12.90 0.00 46.93 3.95
6264 7773 4.477975 GACGCGTGACCCTCCTCG 62.478 72.222 20.70 0.00 0.00 4.63
6275 7784 2.684104 CTCCTCGAGGTCCCAGGA 59.316 66.667 30.17 9.24 34.97 3.86
6303 7812 4.599434 GCCAACGCAACGCAACGA 62.599 61.111 0.00 0.00 34.03 3.85
6325 7837 2.546494 GCAGGTGTGTGTGTGAGGC 61.546 63.158 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 7.648039 ACTCGTGGAAGAATAGAGATTAACT 57.352 36.000 0.00 0.00 33.53 2.24
21 22 4.851843 TCATCTACCTACTCGTGGAAGAA 58.148 43.478 0.00 0.00 0.00 2.52
62 63 7.497909 CGGTTATGTTAGGTATCATTCCACTTT 59.502 37.037 0.00 0.00 0.00 2.66
68 69 7.924412 TGTTCTCGGTTATGTTAGGTATCATTC 59.076 37.037 0.00 0.00 0.00 2.67
80 81 3.366070 CGACACTCTGTTCTCGGTTATGT 60.366 47.826 0.00 0.00 0.00 2.29
94 95 1.996798 TCCTCTTCAACCGACACTCT 58.003 50.000 0.00 0.00 0.00 3.24
102 103 0.036294 CTCCCCGTTCCTCTTCAACC 60.036 60.000 0.00 0.00 0.00 3.77
117 118 2.093658 CACACATAGTACACCCACTCCC 60.094 54.545 0.00 0.00 0.00 4.30
119 120 3.368116 GGACACACATAGTACACCCACTC 60.368 52.174 0.00 0.00 0.00 3.51
120 121 2.565834 GGACACACATAGTACACCCACT 59.434 50.000 0.00 0.00 0.00 4.00
122 123 1.903860 GGGACACACATAGTACACCCA 59.096 52.381 0.00 0.00 36.59 4.51
125 126 5.001232 ACAATTGGGACACACATAGTACAC 58.999 41.667 10.83 0.00 39.29 2.90
129 143 3.334691 CGACAATTGGGACACACATAGT 58.665 45.455 10.83 0.00 39.29 2.12
135 149 1.819928 CATCCGACAATTGGGACACA 58.180 50.000 10.83 0.00 39.29 3.72
142 156 1.069703 CGCATAGGCATCCGACAATTG 60.070 52.381 3.24 3.24 41.24 2.32
179 193 2.346803 TCGAAAGAAGAGGATTTGCGG 58.653 47.619 0.00 0.00 37.03 5.69
205 219 8.638565 CATGGTCTTATCGTTGTTCAAATTTTC 58.361 33.333 0.00 0.00 0.00 2.29
206 220 7.598493 CCATGGTCTTATCGTTGTTCAAATTTT 59.402 33.333 2.57 0.00 0.00 1.82
210 224 5.309638 TCCATGGTCTTATCGTTGTTCAAA 58.690 37.500 12.58 0.00 0.00 2.69
212 226 4.545208 TCCATGGTCTTATCGTTGTTCA 57.455 40.909 12.58 0.00 0.00 3.18
214 228 4.876107 GTCATCCATGGTCTTATCGTTGTT 59.124 41.667 12.58 0.00 0.00 2.83
234 248 3.501445 TCAACGTCATGCATCAAATGTCA 59.499 39.130 0.00 0.00 0.00 3.58
238 252 4.487948 CCTTTCAACGTCATGCATCAAAT 58.512 39.130 0.00 0.00 0.00 2.32
268 282 0.758685 TTGGGCCACAGGGTTTGAAG 60.759 55.000 5.23 0.00 36.17 3.02
291 305 3.502211 AGGTACATCAAAACGCTTCCAAG 59.498 43.478 0.00 0.00 0.00 3.61
296 310 2.073816 CCGAGGTACATCAAAACGCTT 58.926 47.619 8.44 0.00 0.00 4.68
299 313 0.725117 GGCCGAGGTACATCAAAACG 59.275 55.000 8.44 0.00 0.00 3.60
305 319 4.603946 GCCGGGCCGAGGTACATC 62.604 72.222 30.79 0.00 0.00 3.06
316 330 0.670854 GATAAGAAGGATCGCCGGGC 60.671 60.000 9.54 9.54 39.96 6.13
318 332 3.108521 CGATAAGAAGGATCGCCGG 57.891 57.895 0.00 0.00 39.71 6.13
338 370 2.839486 ATGAGTCGCAGTTGGAGAAA 57.161 45.000 0.00 0.00 0.00 2.52
341 373 4.033358 GTGAATTATGAGTCGCAGTTGGAG 59.967 45.833 0.00 0.00 31.13 3.86
349 381 2.030457 CGGGTTGTGAATTATGAGTCGC 59.970 50.000 0.00 0.00 0.00 5.19
356 388 1.339247 TGCCGTCGGGTTGTGAATTAT 60.339 47.619 14.38 0.00 34.97 1.28
358 390 1.228003 TGCCGTCGGGTTGTGAATT 60.228 52.632 14.38 0.00 34.97 2.17
361 393 4.612412 GGTGCCGTCGGGTTGTGA 62.612 66.667 14.38 0.00 34.97 3.58
405 979 6.260936 CGCCAATAGAATGGAGATACTGTTTT 59.739 38.462 0.00 0.00 42.25 2.43
406 980 5.760253 CGCCAATAGAATGGAGATACTGTTT 59.240 40.000 0.00 0.00 42.25 2.83
410 984 4.588951 TGACGCCAATAGAATGGAGATACT 59.411 41.667 4.06 0.00 42.25 2.12
411 985 4.883083 TGACGCCAATAGAATGGAGATAC 58.117 43.478 4.06 0.00 42.25 2.24
412 986 4.561530 GCTGACGCCAATAGAATGGAGATA 60.562 45.833 4.06 0.00 42.25 1.98
413 987 3.805108 GCTGACGCCAATAGAATGGAGAT 60.805 47.826 4.06 0.00 42.25 2.75
414 988 2.483714 GCTGACGCCAATAGAATGGAGA 60.484 50.000 4.06 0.00 42.25 3.71
416 990 1.806247 CGCTGACGCCAATAGAATGGA 60.806 52.381 0.00 0.00 43.54 3.41
417 991 0.583438 CGCTGACGCCAATAGAATGG 59.417 55.000 0.00 0.00 43.70 3.16
419 993 2.882927 TACGCTGACGCCAATAGAAT 57.117 45.000 0.00 0.00 45.53 2.40
420 994 2.882927 ATACGCTGACGCCAATAGAA 57.117 45.000 0.00 0.00 45.53 2.10
422 996 2.032894 CCAAATACGCTGACGCCAATAG 60.033 50.000 0.00 0.00 45.53 1.73
423 997 1.937223 CCAAATACGCTGACGCCAATA 59.063 47.619 0.00 0.00 45.53 1.90
424 998 0.732571 CCAAATACGCTGACGCCAAT 59.267 50.000 0.00 0.00 45.53 3.16
487 1620 2.029369 TTTCACGTTACCGCGGCT 59.971 55.556 28.58 15.49 37.70 5.52
587 1720 0.755698 TTGCGTTGGGGTTTTGCCTA 60.756 50.000 0.00 0.00 37.43 3.93
591 1724 0.808060 GTGGTTGCGTTGGGGTTTTG 60.808 55.000 0.00 0.00 0.00 2.44
592 1725 1.518302 GTGGTTGCGTTGGGGTTTT 59.482 52.632 0.00 0.00 0.00 2.43
593 1726 2.428085 GGTGGTTGCGTTGGGGTTT 61.428 57.895 0.00 0.00 0.00 3.27
594 1727 2.835895 GGTGGTTGCGTTGGGGTT 60.836 61.111 0.00 0.00 0.00 4.11
595 1728 4.130554 TGGTGGTTGCGTTGGGGT 62.131 61.111 0.00 0.00 0.00 4.95
633 1770 2.110213 GTGCGGGTCAGGTTGTCA 59.890 61.111 0.00 0.00 0.00 3.58
634 1771 2.668550 GGTGCGGGTCAGGTTGTC 60.669 66.667 0.00 0.00 0.00 3.18
635 1772 4.619227 CGGTGCGGGTCAGGTTGT 62.619 66.667 0.00 0.00 0.00 3.32
814 1952 0.393944 GGAGCGGGGGAGTTAAAAGG 60.394 60.000 0.00 0.00 0.00 3.11
842 1980 8.477419 AGGGTAGTCAGTAGTAGTAGTAGTAG 57.523 42.308 0.00 0.00 0.00 2.57
843 1981 8.846423 AAGGGTAGTCAGTAGTAGTAGTAGTA 57.154 38.462 0.00 0.00 0.00 1.82
865 2003 3.055819 TGGTGAGATCGGAGAAGAAAAGG 60.056 47.826 0.00 0.00 43.58 3.11
1307 2454 4.918201 GCGATCTTCCCCCGCCAG 62.918 72.222 0.00 0.00 42.77 4.85
1326 2473 4.196778 TTGTGGCCTGGCGTGGAA 62.197 61.111 13.40 0.00 0.00 3.53
1766 2914 6.535150 GGCACTAGCTAAATTGAAATTTTCCC 59.465 38.462 6.34 0.00 41.70 3.97
1815 2963 1.338105 TGAGCCGTGACAATTGAGAGG 60.338 52.381 13.59 10.55 0.00 3.69
1816 2964 2.084610 TGAGCCGTGACAATTGAGAG 57.915 50.000 13.59 0.41 0.00 3.20
1894 3045 6.541969 TCATGCAATCATTTACGTAACACTG 58.458 36.000 7.70 6.46 0.00 3.66
1902 3053 3.967401 TGCCATCATGCAATCATTTACG 58.033 40.909 0.00 0.00 38.56 3.18
1958 3115 8.881743 CCAAACAAAAGAAATGATGAACAGAAA 58.118 29.630 0.00 0.00 0.00 2.52
2017 3174 8.716909 GGAAGAATTAAGCTCAGCATAAGATAC 58.283 37.037 0.00 0.00 0.00 2.24
2027 3184 5.048504 TGCAAGTTGGAAGAATTAAGCTCAG 60.049 40.000 4.75 0.00 0.00 3.35
2148 3308 2.616634 CACATGATCAGGTGGAGGAG 57.383 55.000 28.43 5.79 39.22 3.69
2253 3413 3.168528 AACCTGACCCACCGCTGT 61.169 61.111 0.00 0.00 0.00 4.40
2717 3877 9.601217 GATGTGGGATAGATGTATTTATACACC 57.399 37.037 4.79 0.00 45.11 4.16
2770 3930 9.956720 ACTTTTCTTTGTGAAATGTGAATAGAG 57.043 29.630 8.26 0.00 45.36 2.43
2917 4162 5.576563 TGATTCTACTTGGTTCTTTCCCA 57.423 39.130 0.00 0.00 0.00 4.37
3030 4275 5.874810 TGAAGGAGATACAAAACTTCATCCG 59.125 40.000 0.00 0.00 41.63 4.18
3118 4459 6.530181 GCAACAAAACTTAGGGCATATAACAC 59.470 38.462 0.00 0.00 0.00 3.32
3126 4467 2.660572 TCAGCAACAAAACTTAGGGCA 58.339 42.857 0.00 0.00 0.00 5.36
3292 4633 6.183360 GGTTACACTCCTATCTTCTATGCACA 60.183 42.308 0.00 0.00 0.00 4.57
3293 4634 6.183360 TGGTTACACTCCTATCTTCTATGCAC 60.183 42.308 0.00 0.00 0.00 4.57
3294 4635 5.897250 TGGTTACACTCCTATCTTCTATGCA 59.103 40.000 0.00 0.00 0.00 3.96
3441 4802 2.720915 AGGAAGCAGAAATGGAGAAGC 58.279 47.619 0.00 0.00 0.00 3.86
3902 5263 3.256383 TGTCCATGTGCTCTGGAAAATTG 59.744 43.478 8.05 0.00 44.19 2.32
4112 5474 2.622436 AGCTTTCCAGAAGACGCATAC 58.378 47.619 0.00 0.00 0.00 2.39
4278 5640 9.179909 CTTATCTAGTCGAAGTATCATGGGTAT 57.820 37.037 0.00 0.00 0.00 2.73
4401 5763 9.944663 GTGTGTCATTTCTTTGTAGTCAATTTA 57.055 29.630 0.00 0.00 33.32 1.40
4402 5764 8.465999 TGTGTGTCATTTCTTTGTAGTCAATTT 58.534 29.630 0.00 0.00 33.32 1.82
4403 5765 7.995289 TGTGTGTCATTTCTTTGTAGTCAATT 58.005 30.769 0.00 0.00 33.32 2.32
4404 5766 7.498900 TCTGTGTGTCATTTCTTTGTAGTCAAT 59.501 33.333 0.00 0.00 33.32 2.57
4405 5767 6.821160 TCTGTGTGTCATTTCTTTGTAGTCAA 59.179 34.615 0.00 0.00 0.00 3.18
4406 5768 6.257849 GTCTGTGTGTCATTTCTTTGTAGTCA 59.742 38.462 0.00 0.00 0.00 3.41
4407 5769 6.257849 TGTCTGTGTGTCATTTCTTTGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
4408 5770 6.112734 TGTCTGTGTGTCATTTCTTTGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
4409 5771 6.603237 TGTCTGTGTGTCATTTCTTTGTAG 57.397 37.500 0.00 0.00 0.00 2.74
4410 5772 6.993786 TTGTCTGTGTGTCATTTCTTTGTA 57.006 33.333 0.00 0.00 0.00 2.41
4412 5774 6.497437 TCATTGTCTGTGTGTCATTTCTTTG 58.503 36.000 0.00 0.00 0.00 2.77
4413 5775 6.698008 TCATTGTCTGTGTGTCATTTCTTT 57.302 33.333 0.00 0.00 0.00 2.52
4414 5776 6.487668 TGATCATTGTCTGTGTGTCATTTCTT 59.512 34.615 0.00 0.00 0.00 2.52
4415 5777 5.999600 TGATCATTGTCTGTGTGTCATTTCT 59.000 36.000 0.00 0.00 0.00 2.52
4416 5778 6.245115 TGATCATTGTCTGTGTGTCATTTC 57.755 37.500 0.00 0.00 0.00 2.17
4418 5780 6.178324 AGATGATCATTGTCTGTGTGTCATT 58.822 36.000 10.14 0.00 0.00 2.57
4419 5781 5.742063 AGATGATCATTGTCTGTGTGTCAT 58.258 37.500 10.14 0.00 0.00 3.06
4420 5782 5.156608 AGATGATCATTGTCTGTGTGTCA 57.843 39.130 10.14 0.00 0.00 3.58
4421 5783 6.101997 TGTAGATGATCATTGTCTGTGTGTC 58.898 40.000 10.14 0.00 0.00 3.67
4422 5784 6.041423 TGTAGATGATCATTGTCTGTGTGT 57.959 37.500 10.14 0.00 0.00 3.72
4423 5785 6.335777 TCTGTAGATGATCATTGTCTGTGTG 58.664 40.000 10.14 0.00 0.00 3.82
4425 5787 7.222417 GTCTTCTGTAGATGATCATTGTCTGTG 59.778 40.741 10.14 0.00 34.79 3.66
4426 5788 7.123997 AGTCTTCTGTAGATGATCATTGTCTGT 59.876 37.037 10.14 0.00 34.79 3.41
4427 5789 7.490840 AGTCTTCTGTAGATGATCATTGTCTG 58.509 38.462 10.14 7.40 34.79 3.51
4428 5790 7.658525 AGTCTTCTGTAGATGATCATTGTCT 57.341 36.000 10.14 6.10 34.79 3.41
4435 5797 8.584157 ACCATGATAAGTCTTCTGTAGATGATC 58.416 37.037 0.00 0.00 34.79 2.92
4436 5798 8.489676 ACCATGATAAGTCTTCTGTAGATGAT 57.510 34.615 0.00 0.00 34.79 2.45
4438 5800 7.950512 AGACCATGATAAGTCTTCTGTAGATG 58.049 38.462 0.00 0.00 40.43 2.90
4849 6293 7.793927 AGAGCTTTAAGGCATACTGAAATAC 57.206 36.000 12.54 0.00 29.05 1.89
4850 6294 8.482943 TGTAGAGCTTTAAGGCATACTGAAATA 58.517 33.333 12.54 0.00 29.05 1.40
4851 6295 7.338710 TGTAGAGCTTTAAGGCATACTGAAAT 58.661 34.615 12.54 0.00 29.05 2.17
4852 6296 6.707290 TGTAGAGCTTTAAGGCATACTGAAA 58.293 36.000 12.54 0.00 32.02 2.69
4853 6297 6.294361 TGTAGAGCTTTAAGGCATACTGAA 57.706 37.500 12.54 0.00 32.02 3.02
4854 6298 5.932619 TGTAGAGCTTTAAGGCATACTGA 57.067 39.130 12.54 0.00 32.02 3.41
4855 6299 6.595716 AGTTTGTAGAGCTTTAAGGCATACTG 59.404 38.462 12.54 0.00 32.02 2.74
4856 6300 6.595716 CAGTTTGTAGAGCTTTAAGGCATACT 59.404 38.462 12.54 10.06 32.02 2.12
4857 6301 6.675728 GCAGTTTGTAGAGCTTTAAGGCATAC 60.676 42.308 12.54 13.61 34.17 2.39
4858 6302 5.354234 GCAGTTTGTAGAGCTTTAAGGCATA 59.646 40.000 12.54 1.58 34.17 3.14
4859 6303 4.156739 GCAGTTTGTAGAGCTTTAAGGCAT 59.843 41.667 12.54 2.57 34.17 4.40
4860 6304 3.502211 GCAGTTTGTAGAGCTTTAAGGCA 59.498 43.478 12.54 0.00 34.17 4.75
4861 6305 3.119814 GGCAGTTTGTAGAGCTTTAAGGC 60.120 47.826 0.39 0.39 0.00 4.35
4862 6306 3.440522 GGGCAGTTTGTAGAGCTTTAAGG 59.559 47.826 0.00 0.00 0.00 2.69
4863 6307 4.072131 TGGGCAGTTTGTAGAGCTTTAAG 58.928 43.478 0.00 0.00 0.00 1.85
4864 6308 4.093472 TGGGCAGTTTGTAGAGCTTTAA 57.907 40.909 0.00 0.00 0.00 1.52
4865 6309 3.780804 TGGGCAGTTTGTAGAGCTTTA 57.219 42.857 0.00 0.00 0.00 1.85
4866 6310 2.656947 TGGGCAGTTTGTAGAGCTTT 57.343 45.000 0.00 0.00 0.00 3.51
4867 6311 2.887151 ATGGGCAGTTTGTAGAGCTT 57.113 45.000 0.00 0.00 0.00 3.74
4868 6312 3.107601 TCTATGGGCAGTTTGTAGAGCT 58.892 45.455 0.00 0.00 0.00 4.09
4869 6313 3.543680 TCTATGGGCAGTTTGTAGAGC 57.456 47.619 0.00 0.00 0.00 4.09
4870 6314 3.812053 GCATCTATGGGCAGTTTGTAGAG 59.188 47.826 0.00 0.00 0.00 2.43
4871 6315 3.455910 AGCATCTATGGGCAGTTTGTAGA 59.544 43.478 0.00 0.00 0.00 2.59
4872 6316 3.813443 AGCATCTATGGGCAGTTTGTAG 58.187 45.455 0.00 0.00 0.00 2.74
4873 6317 3.931907 AGCATCTATGGGCAGTTTGTA 57.068 42.857 0.00 0.00 0.00 2.41
4874 6318 2.814805 AGCATCTATGGGCAGTTTGT 57.185 45.000 0.00 0.00 0.00 2.83
4875 6319 4.083643 CGATAAGCATCTATGGGCAGTTTG 60.084 45.833 0.00 0.00 0.00 2.93
4876 6320 4.067896 CGATAAGCATCTATGGGCAGTTT 58.932 43.478 0.00 0.00 0.00 2.66
4877 6321 3.071602 ACGATAAGCATCTATGGGCAGTT 59.928 43.478 0.00 0.00 0.00 3.16
4878 6322 2.634940 ACGATAAGCATCTATGGGCAGT 59.365 45.455 0.00 0.00 0.00 4.40
4879 6323 3.325293 ACGATAAGCATCTATGGGCAG 57.675 47.619 0.00 0.00 0.00 4.85
4880 6324 3.769739 AACGATAAGCATCTATGGGCA 57.230 42.857 0.00 0.00 0.00 5.36
4881 6325 5.874810 TCATAAACGATAAGCATCTATGGGC 59.125 40.000 0.00 0.00 0.00 5.36
4882 6326 7.905604 TTCATAAACGATAAGCATCTATGGG 57.094 36.000 0.00 0.00 0.00 4.00
4890 6334 9.220635 CGAATTGATTTTCATAAACGATAAGCA 57.779 29.630 0.00 0.00 0.00 3.91
4891 6335 9.433317 TCGAATTGATTTTCATAAACGATAAGC 57.567 29.630 0.00 0.00 0.00 3.09
4895 6339 9.438291 GATGTCGAATTGATTTTCATAAACGAT 57.562 29.630 0.00 0.00 0.00 3.73
4896 6340 8.664798 AGATGTCGAATTGATTTTCATAAACGA 58.335 29.630 0.00 0.00 0.00 3.85
4897 6341 8.826546 AGATGTCGAATTGATTTTCATAAACG 57.173 30.769 0.00 0.00 0.00 3.60
4927 6420 7.229306 CAGCTCTATTAACATCTAAAATGCCCA 59.771 37.037 0.00 0.00 0.00 5.36
5018 6511 4.257267 TCATATCAGGTATGAGCAACCG 57.743 45.455 0.00 0.00 43.25 4.44
5061 6554 1.343465 TCCAAAGAGACGTCACCTTCC 59.657 52.381 19.50 0.00 0.00 3.46
5792 7285 7.912250 GTCAAGTCAGCATATAAATTCAACCAG 59.088 37.037 0.00 0.00 0.00 4.00
5793 7286 7.611467 AGTCAAGTCAGCATATAAATTCAACCA 59.389 33.333 0.00 0.00 0.00 3.67
5947 7442 4.162320 CCTGAGTGGGTATGAACAGTACAT 59.838 45.833 0.00 0.00 0.00 2.29
6004 7504 2.607892 AAAGGCACGCGAGCAAGTC 61.608 57.895 28.89 12.28 35.83 3.01
6071 7571 5.849510 TCCACTTTCAACAAGATAAGACGA 58.150 37.500 0.00 0.00 0.00 4.20
6072 7572 6.402550 CCATCCACTTTCAACAAGATAAGACG 60.403 42.308 0.00 0.00 0.00 4.18
6088 7597 4.747931 GCCTAGCACATATTCCATCCACTT 60.748 45.833 0.00 0.00 0.00 3.16
6089 7598 3.244700 GCCTAGCACATATTCCATCCACT 60.245 47.826 0.00 0.00 0.00 4.00
6264 7773 0.548510 CCTTCCAATCCTGGGACCTC 59.451 60.000 0.00 0.00 43.71 3.85
6275 7784 0.539438 TGCGTTGGCTTCCTTCCAAT 60.539 50.000 0.00 0.00 44.49 3.16
6303 7812 0.035534 TCACACACACACCTGCACTT 60.036 50.000 0.00 0.00 0.00 3.16
6325 7837 3.576259 AACCTCCCACCCCCAACG 61.576 66.667 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.