Multiple sequence alignment - TraesCS1A01G125700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G125700 chr1A 100.000 2849 0 0 1 2849 150005810 150008658 0.000000e+00 5262.0
1 TraesCS1A01G125700 chr1A 95.041 121 5 1 42 161 523010172 523010052 3.750000e-44 189.0
2 TraesCS1A01G125700 chr1D 93.014 2548 80 35 157 2613 140786344 140783804 0.000000e+00 3629.0
3 TraesCS1A01G125700 chr1D 98.182 110 2 0 49 158 464736227 464736336 2.900000e-45 193.0
4 TraesCS1A01G125700 chr1B 94.186 1892 65 18 762 2613 197428130 197430016 0.000000e+00 2843.0
5 TraesCS1A01G125700 chr1B 86.949 590 23 13 157 693 197427547 197428135 5.220000e-172 614.0
6 TraesCS1A01G125700 chr1B 97.143 35 1 0 2815 2849 669804623 669804589 3.070000e-05 60.2
7 TraesCS1A01G125700 chr3D 78.631 599 116 8 1089 1678 59256704 59257299 1.240000e-103 387.0
8 TraesCS1A01G125700 chr3A 78.631 599 116 8 1089 1678 68120370 68120965 1.240000e-103 387.0
9 TraesCS1A01G125700 chr3B 78.297 599 118 8 1089 1678 94856302 94856897 2.680000e-100 375.0
10 TraesCS1A01G125700 chr2A 95.902 122 4 1 37 158 205919765 205919885 2.240000e-46 196.0
11 TraesCS1A01G125700 chr2B 98.198 111 2 0 49 159 25365982 25366092 8.050000e-46 195.0
12 TraesCS1A01G125700 chr5B 96.552 116 4 0 45 160 531199956 531200071 2.900000e-45 193.0
13 TraesCS1A01G125700 chr5B 97.368 114 2 1 49 161 558558587 558558700 2.900000e-45 193.0
14 TraesCS1A01G125700 chr5A 98.182 110 2 0 49 158 350570287 350570178 2.900000e-45 193.0
15 TraesCS1A01G125700 chr4D 97.321 112 3 0 48 159 127149708 127149819 1.040000e-44 191.0
16 TraesCS1A01G125700 chrUn 91.603 131 9 2 28 158 150795929 150796057 2.260000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G125700 chr1A 150005810 150008658 2848 False 5262.0 5262 100.0000 1 2849 1 chr1A.!!$F1 2848
1 TraesCS1A01G125700 chr1D 140783804 140786344 2540 True 3629.0 3629 93.0140 157 2613 1 chr1D.!!$R1 2456
2 TraesCS1A01G125700 chr1B 197427547 197430016 2469 False 1728.5 2843 90.5675 157 2613 2 chr1B.!!$F1 2456
3 TraesCS1A01G125700 chr3D 59256704 59257299 595 False 387.0 387 78.6310 1089 1678 1 chr3D.!!$F1 589
4 TraesCS1A01G125700 chr3A 68120370 68120965 595 False 387.0 387 78.6310 1089 1678 1 chr3A.!!$F1 589
5 TraesCS1A01G125700 chr3B 94856302 94856897 595 False 375.0 375 78.2970 1089 1678 1 chr3B.!!$F1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
68 69 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.0 14.79 0.04 33.41 4.30 F
1254 1322 0.381089 CCTTCTACGTGCTCTACCGG 59.619 60.0 0.00 0.00 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1770 1.366854 CCCTTTACCTTCTTCGGCGC 61.367 60.0 0.00 0.0 0.0 6.53 R
2637 2742 0.107066 TGTATCCCGTGACGAGCCTA 60.107 55.0 6.54 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.986929 AATTATATTTCTTCCTTGCTGCTACT 57.013 30.769 0.00 0.00 0.00 2.57
33 34 8.986929 ATTATATTTCTTCCTTGCTGCTACTT 57.013 30.769 0.00 0.00 0.00 2.24
34 35 6.934048 ATATTTCTTCCTTGCTGCTACTTC 57.066 37.500 0.00 0.00 0.00 3.01
35 36 2.770164 TCTTCCTTGCTGCTACTTCC 57.230 50.000 0.00 0.00 0.00 3.46
36 37 2.260822 TCTTCCTTGCTGCTACTTCCT 58.739 47.619 0.00 0.00 0.00 3.36
37 38 2.234908 TCTTCCTTGCTGCTACTTCCTC 59.765 50.000 0.00 0.00 0.00 3.71
38 39 1.944177 TCCTTGCTGCTACTTCCTCT 58.056 50.000 0.00 0.00 0.00 3.69
39 40 1.827969 TCCTTGCTGCTACTTCCTCTC 59.172 52.381 0.00 0.00 0.00 3.20
40 41 1.552337 CCTTGCTGCTACTTCCTCTCA 59.448 52.381 0.00 0.00 0.00 3.27
41 42 2.170187 CCTTGCTGCTACTTCCTCTCAT 59.830 50.000 0.00 0.00 0.00 2.90
42 43 3.456280 CTTGCTGCTACTTCCTCTCATC 58.544 50.000 0.00 0.00 0.00 2.92
43 44 2.744760 TGCTGCTACTTCCTCTCATCT 58.255 47.619 0.00 0.00 0.00 2.90
44 45 3.102972 TGCTGCTACTTCCTCTCATCTT 58.897 45.455 0.00 0.00 0.00 2.40
45 46 3.118847 TGCTGCTACTTCCTCTCATCTTG 60.119 47.826 0.00 0.00 0.00 3.02
46 47 3.740764 GCTGCTACTTCCTCTCATCTTGG 60.741 52.174 0.00 0.00 0.00 3.61
47 48 2.768527 TGCTACTTCCTCTCATCTTGGG 59.231 50.000 0.00 0.00 0.00 4.12
48 49 3.034635 GCTACTTCCTCTCATCTTGGGA 58.965 50.000 0.00 0.00 0.00 4.37
49 50 3.645687 GCTACTTCCTCTCATCTTGGGAT 59.354 47.826 0.00 0.00 0.00 3.85
50 51 4.262420 GCTACTTCCTCTCATCTTGGGATC 60.262 50.000 0.00 0.00 0.00 3.36
51 52 4.006247 ACTTCCTCTCATCTTGGGATCT 57.994 45.455 0.00 0.00 0.00 2.75
52 53 5.149584 ACTTCCTCTCATCTTGGGATCTA 57.850 43.478 0.00 0.00 0.00 1.98
53 54 4.898861 ACTTCCTCTCATCTTGGGATCTAC 59.101 45.833 0.00 0.00 0.00 2.59
54 55 4.823364 TCCTCTCATCTTGGGATCTACT 57.177 45.455 0.00 0.00 0.00 2.57
55 56 4.735369 TCCTCTCATCTTGGGATCTACTC 58.265 47.826 0.00 0.00 0.00 2.59
56 57 3.831911 CCTCTCATCTTGGGATCTACTCC 59.168 52.174 0.00 0.00 44.11 3.85
65 66 0.953003 GGATCTACTCCCTCCGTTCG 59.047 60.000 0.00 0.00 38.19 3.95
66 67 0.953003 GATCTACTCCCTCCGTTCGG 59.047 60.000 4.74 4.74 0.00 4.30
67 68 0.549950 ATCTACTCCCTCCGTTCGGA 59.450 55.000 13.34 13.34 0.00 4.55
68 69 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
69 70 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
70 71 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
71 72 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
72 73 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
73 74 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
74 75 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
75 76 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
76 77 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
77 78 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
78 79 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
79 80 4.243270 CTCCGTTCGGAATTACTTGTCTT 58.757 43.478 14.79 0.00 33.41 3.01
80 81 3.991773 TCCGTTCGGAATTACTTGTCTTG 59.008 43.478 11.66 0.00 0.00 3.02
81 82 3.991773 CCGTTCGGAATTACTTGTCTTGA 59.008 43.478 5.19 0.00 0.00 3.02
82 83 4.449743 CCGTTCGGAATTACTTGTCTTGAA 59.550 41.667 5.19 0.00 0.00 2.69
83 84 5.049954 CCGTTCGGAATTACTTGTCTTGAAA 60.050 40.000 5.19 0.00 0.00 2.69
84 85 6.423862 CGTTCGGAATTACTTGTCTTGAAAA 58.576 36.000 0.00 0.00 0.00 2.29
85 86 7.075741 CGTTCGGAATTACTTGTCTTGAAAAT 58.924 34.615 0.00 0.00 0.00 1.82
86 87 7.059488 CGTTCGGAATTACTTGTCTTGAAAATG 59.941 37.037 0.00 0.00 0.00 2.32
87 88 6.908825 TCGGAATTACTTGTCTTGAAAATGG 58.091 36.000 0.00 0.00 0.00 3.16
88 89 6.712998 TCGGAATTACTTGTCTTGAAAATGGA 59.287 34.615 0.00 0.00 0.00 3.41
89 90 7.393234 TCGGAATTACTTGTCTTGAAAATGGAT 59.607 33.333 0.00 0.00 0.00 3.41
90 91 7.485913 CGGAATTACTTGTCTTGAAAATGGATG 59.514 37.037 0.00 0.00 0.00 3.51
91 92 8.306761 GGAATTACTTGTCTTGAAAATGGATGT 58.693 33.333 0.00 0.00 0.00 3.06
95 96 9.739276 TTACTTGTCTTGAAAATGGATGTATCT 57.261 29.630 0.00 0.00 0.00 1.98
97 98 9.388506 ACTTGTCTTGAAAATGGATGTATCTAG 57.611 33.333 0.00 0.00 0.00 2.43
98 99 9.605275 CTTGTCTTGAAAATGGATGTATCTAGA 57.395 33.333 0.00 0.00 0.00 2.43
99 100 9.958180 TTGTCTTGAAAATGGATGTATCTAGAA 57.042 29.630 0.00 0.00 0.00 2.10
100 101 9.383519 TGTCTTGAAAATGGATGTATCTAGAAC 57.616 33.333 0.00 0.00 0.00 3.01
101 102 9.606631 GTCTTGAAAATGGATGTATCTAGAACT 57.393 33.333 0.00 0.00 0.00 3.01
131 132 6.604012 ACGTCTAGATACATCTATTTCTGCG 58.396 40.000 0.00 0.00 38.60 5.18
132 133 6.427242 ACGTCTAGATACATCTATTTCTGCGA 59.573 38.462 0.00 0.00 38.60 5.10
133 134 6.739100 CGTCTAGATACATCTATTTCTGCGAC 59.261 42.308 0.00 2.21 38.60 5.19
134 135 7.571428 CGTCTAGATACATCTATTTCTGCGACA 60.571 40.741 0.00 0.00 38.60 4.35
135 136 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
136 137 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
137 138 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
138 139 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
139 140 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
140 141 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
141 142 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
142 143 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
143 144 6.903883 TCTATTTCTGCGACAAGTAATTCC 57.096 37.500 0.00 0.00 0.00 3.01
144 145 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
145 146 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
146 147 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
147 148 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
148 149 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
149 150 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
150 151 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
151 152 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
152 153 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
153 154 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
154 155 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
155 156 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
265 269 4.644685 TCAAAGCACTAAAGTCAAAGGCTT 59.355 37.500 0.00 0.00 41.42 4.35
325 330 6.406370 TGGTTACTGAAGGATACACATCAAG 58.594 40.000 0.00 0.00 41.41 3.02
353 358 5.163683 GCTGCATGTTTGAATATGACACTCT 60.164 40.000 4.87 0.00 30.04 3.24
356 361 6.037500 TGCATGTTTGAATATGACACTCTAGC 59.962 38.462 4.87 0.00 30.04 3.42
359 364 7.834068 TGTTTGAATATGACACTCTAGCTTC 57.166 36.000 0.00 0.00 0.00 3.86
361 366 4.611943 TGAATATGACACTCTAGCTTCGC 58.388 43.478 0.00 0.00 0.00 4.70
396 401 5.039480 AGTGAAGAAACTTGCATGAATCG 57.961 39.130 6.60 0.00 0.00 3.34
476 510 8.210946 TGGTAGCAAAGCAGTAAACATATATCT 58.789 33.333 0.00 0.00 0.00 1.98
552 586 3.379372 TGGCTTTGATATGCTCTTTCTGC 59.621 43.478 0.00 0.00 0.00 4.26
554 588 4.261114 GGCTTTGATATGCTCTTTCTGCTC 60.261 45.833 0.00 0.00 0.00 4.26
555 589 4.552378 GCTTTGATATGCTCTTTCTGCTCG 60.552 45.833 0.00 0.00 0.00 5.03
556 590 3.808466 TGATATGCTCTTTCTGCTCGT 57.192 42.857 0.00 0.00 0.00 4.18
557 591 3.711086 TGATATGCTCTTTCTGCTCGTC 58.289 45.455 0.00 0.00 0.00 4.20
558 592 2.586258 TATGCTCTTTCTGCTCGTCC 57.414 50.000 0.00 0.00 0.00 4.79
559 593 0.610174 ATGCTCTTTCTGCTCGTCCA 59.390 50.000 0.00 0.00 0.00 4.02
667 724 5.577164 CGTCACAAAACAAAACCACCAAATA 59.423 36.000 0.00 0.00 0.00 1.40
669 726 7.201565 CGTCACAAAACAAAACCACCAAATATT 60.202 33.333 0.00 0.00 0.00 1.28
693 750 7.778470 TTTATGTTGGCCTTTGTTTTGTTAG 57.222 32.000 3.32 0.00 0.00 2.34
765 823 6.404293 CGCACTAGGCAAAGTACCAAATTATT 60.404 38.462 0.00 0.00 45.17 1.40
766 824 7.201661 CGCACTAGGCAAAGTACCAAATTATTA 60.202 37.037 0.00 0.00 45.17 0.98
767 825 8.129211 GCACTAGGCAAAGTACCAAATTATTAG 58.871 37.037 0.00 0.00 43.97 1.73
855 913 1.097722 ACTTTCTCTCTCCCCTCCCT 58.902 55.000 0.00 0.00 0.00 4.20
859 917 2.018086 CTCTCTCCCCTCCCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
1059 1121 4.374584 CCCCCAATGGCCAACGGA 62.375 66.667 22.38 0.00 0.00 4.69
1111 1173 1.382009 TACCAGCGCCCCATCTACA 60.382 57.895 2.29 0.00 0.00 2.74
1254 1322 0.381089 CCTTCTACGTGCTCTACCGG 59.619 60.000 0.00 0.00 0.00 5.28
1410 1478 6.104439 GTCTATTTCTACGACGACTTCTCA 57.896 41.667 0.00 0.00 0.00 3.27
1506 1574 1.010125 CACCACCGTTTTCACTGCG 60.010 57.895 0.00 0.00 0.00 5.18
1565 1633 0.466124 GCCGGCTCTGACCTTAAGAT 59.534 55.000 22.15 0.00 0.00 2.40
1702 1770 4.087892 CCAGTCCACCTCCGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
1899 1967 7.980662 CCATGCAAAACATTCAGGAAACATATA 59.019 33.333 0.00 0.00 36.64 0.86
1963 2032 4.517453 TCGGTGTAAATTCCCTCAAAGTTG 59.483 41.667 0.00 0.00 0.00 3.16
1968 2037 7.039714 GGTGTAAATTCCCTCAAAGTTGATTCT 60.040 37.037 0.00 0.00 36.46 2.40
1969 2038 9.010029 GTGTAAATTCCCTCAAAGTTGATTCTA 57.990 33.333 0.00 0.00 36.46 2.10
2050 2120 9.498307 GGTGATTTGTTATTTGTAAGATTACGG 57.502 33.333 0.00 0.00 36.45 4.02
2063 2133 8.356533 TGTAAGATTACGGTTCGAATAAATCC 57.643 34.615 0.00 0.00 36.45 3.01
2105 2175 1.478510 CGAGCTACTCCATGTGAGGTT 59.521 52.381 13.60 0.00 46.01 3.50
2110 2180 4.471386 AGCTACTCCATGTGAGGTTGTTAT 59.529 41.667 13.60 0.00 46.01 1.89
2114 2184 6.374417 ACTCCATGTGAGGTTGTTATTACT 57.626 37.500 13.60 0.00 46.01 2.24
2149 2245 4.111916 GCTCATCTGAAGCAGTAGACTTC 58.888 47.826 0.00 0.00 43.15 3.01
2151 2247 5.065704 TCATCTGAAGCAGTAGACTTCAC 57.934 43.478 2.21 0.00 46.46 3.18
2152 2248 4.769488 TCATCTGAAGCAGTAGACTTCACT 59.231 41.667 2.21 0.00 46.46 3.41
2191 2294 9.609346 ACAAAGTACTGAAAATTGTGTAGTAGT 57.391 29.630 8.70 0.00 33.29 2.73
2216 2321 4.265904 ACATGTGATTGTGTCGGTAAGA 57.734 40.909 0.00 0.00 0.00 2.10
2227 2332 5.849510 TGTGTCGGTAAGAAGAATCTTTCA 58.150 37.500 0.00 0.00 43.43 2.69
2229 2334 4.929808 TGTCGGTAAGAAGAATCTTTCAGC 59.070 41.667 0.00 0.00 43.43 4.26
2284 2389 5.221621 ACAAAAACTGTATGGTGGAAATGGG 60.222 40.000 0.00 0.00 36.10 4.00
2317 2422 1.276138 TGTCATGTGAAGGACAGCGAT 59.724 47.619 0.00 0.00 39.00 4.58
2351 2456 0.976641 TTTTGGTTGTTGGTGTGGCA 59.023 45.000 0.00 0.00 0.00 4.92
2442 2547 3.004629 TGTTTAATCAAGTGCTGGTGCTG 59.995 43.478 0.00 0.00 40.48 4.41
2609 2714 2.232941 TGGAGTCACGGGATACAAGTTC 59.767 50.000 0.00 0.00 39.74 3.01
2613 2718 3.326880 AGTCACGGGATACAAGTTCCTTT 59.673 43.478 0.00 0.00 39.74 3.11
2614 2719 3.683340 GTCACGGGATACAAGTTCCTTTC 59.317 47.826 0.00 0.00 39.74 2.62
2615 2720 3.325425 TCACGGGATACAAGTTCCTTTCA 59.675 43.478 0.00 0.00 39.74 2.69
2616 2721 4.069304 CACGGGATACAAGTTCCTTTCAA 58.931 43.478 0.00 0.00 39.74 2.69
2617 2722 4.154195 CACGGGATACAAGTTCCTTTCAAG 59.846 45.833 0.00 0.00 39.74 3.02
2618 2723 4.202430 ACGGGATACAAGTTCCTTTCAAGT 60.202 41.667 0.00 0.00 39.74 3.16
2619 2724 4.154195 CGGGATACAAGTTCCTTTCAAGTG 59.846 45.833 0.00 0.00 39.74 3.16
2620 2725 5.070685 GGGATACAAGTTCCTTTCAAGTGT 58.929 41.667 0.00 0.00 39.74 3.55
2621 2726 6.235664 GGGATACAAGTTCCTTTCAAGTGTA 58.764 40.000 0.00 0.00 39.74 2.90
2622 2727 6.148976 GGGATACAAGTTCCTTTCAAGTGTAC 59.851 42.308 0.00 0.00 39.74 2.90
2623 2728 6.128634 GGATACAAGTTCCTTTCAAGTGTACG 60.129 42.308 0.00 0.00 0.00 3.67
2624 2729 3.311596 ACAAGTTCCTTTCAAGTGTACGC 59.688 43.478 0.00 0.00 0.00 4.42
2625 2730 2.132762 AGTTCCTTTCAAGTGTACGCG 58.867 47.619 3.53 3.53 0.00 6.01
2626 2731 0.863144 TTCCTTTCAAGTGTACGCGC 59.137 50.000 5.73 0.00 0.00 6.86
2627 2732 1.129809 CCTTTCAAGTGTACGCGCG 59.870 57.895 30.96 30.96 0.00 6.86
2628 2733 1.507096 CTTTCAAGTGTACGCGCGC 60.507 57.895 32.58 23.91 0.00 6.86
2642 2747 4.918201 GCGCGGGCAGATTAGGCT 62.918 66.667 20.76 0.00 39.62 4.58
2643 2748 2.663188 CGCGGGCAGATTAGGCTC 60.663 66.667 0.00 0.00 0.00 4.70
2646 2751 4.760757 GGGCAGATTAGGCTCGTC 57.239 61.111 0.00 0.00 0.00 4.20
2647 2752 1.823295 GGGCAGATTAGGCTCGTCA 59.177 57.895 0.00 0.00 0.00 4.35
2648 2753 0.530870 GGGCAGATTAGGCTCGTCAC 60.531 60.000 0.00 0.00 0.00 3.67
2649 2754 0.872021 GGCAGATTAGGCTCGTCACG 60.872 60.000 0.00 0.00 0.00 4.35
2650 2755 0.872021 GCAGATTAGGCTCGTCACGG 60.872 60.000 0.00 0.00 0.00 4.94
2651 2756 0.249073 CAGATTAGGCTCGTCACGGG 60.249 60.000 0.00 0.00 0.00 5.28
2652 2757 0.395311 AGATTAGGCTCGTCACGGGA 60.395 55.000 0.00 0.00 0.00 5.14
2653 2758 0.674534 GATTAGGCTCGTCACGGGAT 59.325 55.000 0.00 0.00 0.00 3.85
2654 2759 1.884579 GATTAGGCTCGTCACGGGATA 59.115 52.381 0.00 0.00 0.00 2.59
2655 2760 1.027357 TTAGGCTCGTCACGGGATAC 58.973 55.000 0.00 0.00 0.00 2.24
2656 2761 0.107066 TAGGCTCGTCACGGGATACA 60.107 55.000 0.00 0.00 39.74 2.29
2657 2762 0.968901 AGGCTCGTCACGGGATACAA 60.969 55.000 0.00 0.00 39.74 2.41
2658 2763 0.527817 GGCTCGTCACGGGATACAAG 60.528 60.000 0.00 0.00 39.74 3.16
2659 2764 0.172803 GCTCGTCACGGGATACAAGT 59.827 55.000 0.00 0.00 39.74 3.16
2660 2765 1.403780 GCTCGTCACGGGATACAAGTT 60.404 52.381 0.00 0.00 39.74 2.66
2661 2766 2.527100 CTCGTCACGGGATACAAGTTC 58.473 52.381 0.00 0.00 39.74 3.01
2662 2767 1.203052 TCGTCACGGGATACAAGTTCC 59.797 52.381 0.00 0.00 39.74 3.62
2663 2768 1.203994 CGTCACGGGATACAAGTTCCT 59.796 52.381 0.00 0.00 39.74 3.36
2664 2769 2.353406 CGTCACGGGATACAAGTTCCTT 60.353 50.000 0.00 0.00 39.74 3.36
2665 2770 3.259902 GTCACGGGATACAAGTTCCTTC 58.740 50.000 0.00 0.00 39.74 3.46
2666 2771 2.235402 TCACGGGATACAAGTTCCTTCC 59.765 50.000 0.00 0.00 39.74 3.46
2667 2772 2.027561 CACGGGATACAAGTTCCTTCCA 60.028 50.000 0.00 0.00 39.74 3.53
2668 2773 2.640826 ACGGGATACAAGTTCCTTCCAA 59.359 45.455 0.00 0.00 39.74 3.53
2669 2774 3.270877 CGGGATACAAGTTCCTTCCAAG 58.729 50.000 0.00 0.00 39.74 3.61
2670 2775 3.017442 GGGATACAAGTTCCTTCCAAGC 58.983 50.000 0.00 0.00 39.74 4.01
2671 2776 3.561313 GGGATACAAGTTCCTTCCAAGCA 60.561 47.826 0.00 0.00 39.74 3.91
2672 2777 4.079253 GGATACAAGTTCCTTCCAAGCAA 58.921 43.478 0.00 0.00 0.00 3.91
2673 2778 4.156739 GGATACAAGTTCCTTCCAAGCAAG 59.843 45.833 0.00 0.00 0.00 4.01
2674 2779 3.297134 ACAAGTTCCTTCCAAGCAAGA 57.703 42.857 0.00 0.00 0.00 3.02
2675 2780 3.217626 ACAAGTTCCTTCCAAGCAAGAG 58.782 45.455 0.00 0.00 0.00 2.85
2676 2781 1.902938 AGTTCCTTCCAAGCAAGAGC 58.097 50.000 0.00 0.00 42.56 4.09
2686 2791 3.787458 GCAAGAGCGTCTACAGCC 58.213 61.111 0.00 0.00 34.64 4.85
2687 2792 2.161486 GCAAGAGCGTCTACAGCCG 61.161 63.158 0.00 0.00 34.64 5.52
2693 2798 4.849329 CGTCTACAGCCGCGTCCC 62.849 72.222 4.92 0.00 0.00 4.46
2694 2799 4.509737 GTCTACAGCCGCGTCCCC 62.510 72.222 4.92 0.00 0.00 4.81
2696 2801 4.077184 CTACAGCCGCGTCCCCAA 62.077 66.667 4.92 0.00 0.00 4.12
2697 2802 4.382320 TACAGCCGCGTCCCCAAC 62.382 66.667 4.92 0.00 0.00 3.77
2701 2806 4.778143 GCCGCGTCCCCAACAGAT 62.778 66.667 4.92 0.00 0.00 2.90
2702 2807 2.511600 CCGCGTCCCCAACAGATC 60.512 66.667 4.92 0.00 0.00 2.75
2703 2808 2.511600 CGCGTCCCCAACAGATCC 60.512 66.667 0.00 0.00 0.00 3.36
2704 2809 2.990479 GCGTCCCCAACAGATCCT 59.010 61.111 0.00 0.00 0.00 3.24
2705 2810 1.299976 GCGTCCCCAACAGATCCTT 59.700 57.895 0.00 0.00 0.00 3.36
2706 2811 0.322546 GCGTCCCCAACAGATCCTTT 60.323 55.000 0.00 0.00 0.00 3.11
2707 2812 1.065709 GCGTCCCCAACAGATCCTTTA 60.066 52.381 0.00 0.00 0.00 1.85
2708 2813 2.906354 CGTCCCCAACAGATCCTTTAG 58.094 52.381 0.00 0.00 0.00 1.85
2709 2814 2.500098 CGTCCCCAACAGATCCTTTAGA 59.500 50.000 0.00 0.00 0.00 2.10
2710 2815 3.134804 CGTCCCCAACAGATCCTTTAGAT 59.865 47.826 0.00 0.00 38.17 1.98
2731 2836 4.746361 TTTTTCGGCGTCGGTGTA 57.254 50.000 10.62 0.00 36.95 2.90
2732 2837 2.983433 TTTTTCGGCGTCGGTGTAA 58.017 47.368 10.62 0.00 36.95 2.41
2733 2838 1.293924 TTTTTCGGCGTCGGTGTAAA 58.706 45.000 10.62 0.00 36.95 2.01
2734 2839 1.293924 TTTTCGGCGTCGGTGTAAAA 58.706 45.000 10.62 6.07 36.95 1.52
2735 2840 1.293924 TTTCGGCGTCGGTGTAAAAA 58.706 45.000 10.62 0.00 36.95 1.94
2751 2856 0.955905 AAAAACCCGTCCCAATCACG 59.044 50.000 0.00 0.00 36.99 4.35
2752 2857 0.179012 AAAACCCGTCCCAATCACGT 60.179 50.000 0.00 0.00 35.39 4.49
2753 2858 0.179012 AAACCCGTCCCAATCACGTT 60.179 50.000 0.00 0.00 35.39 3.99
2754 2859 0.179012 AACCCGTCCCAATCACGTTT 60.179 50.000 0.00 0.00 35.39 3.60
2755 2860 0.179012 ACCCGTCCCAATCACGTTTT 60.179 50.000 0.00 0.00 35.39 2.43
2756 2861 0.519961 CCCGTCCCAATCACGTTTTC 59.480 55.000 0.00 0.00 35.39 2.29
2757 2862 1.231221 CCGTCCCAATCACGTTTTCA 58.769 50.000 0.00 0.00 35.39 2.69
2758 2863 1.196808 CCGTCCCAATCACGTTTTCAG 59.803 52.381 0.00 0.00 35.39 3.02
2759 2864 1.196808 CGTCCCAATCACGTTTTCAGG 59.803 52.381 0.00 0.00 32.41 3.86
2760 2865 2.500229 GTCCCAATCACGTTTTCAGGA 58.500 47.619 0.00 0.00 0.00 3.86
2761 2866 2.225727 GTCCCAATCACGTTTTCAGGAC 59.774 50.000 7.78 7.78 36.12 3.85
2762 2867 1.196808 CCCAATCACGTTTTCAGGACG 59.803 52.381 0.00 0.00 45.46 4.79
2770 2875 2.887733 CGTTTTCAGGACGTCGAAAAG 58.112 47.619 23.23 16.22 40.69 2.27
2771 2876 2.636519 GTTTTCAGGACGTCGAAAAGC 58.363 47.619 23.23 15.25 40.69 3.51
2772 2877 0.856641 TTTCAGGACGTCGAAAAGCG 59.143 50.000 13.94 0.00 42.69 4.68
2773 2878 1.554042 TTCAGGACGTCGAAAAGCGC 61.554 55.000 9.92 0.00 40.61 5.92
2774 2879 3.103911 AGGACGTCGAAAAGCGCG 61.104 61.111 9.92 0.00 42.33 6.86
2776 2881 2.201885 GACGTCGAAAAGCGCGTG 60.202 61.111 8.43 0.00 46.69 5.34
2777 2882 2.924285 GACGTCGAAAAGCGCGTGT 61.924 57.895 8.43 0.00 46.69 4.49
2778 2883 2.244382 CGTCGAAAAGCGCGTGTT 59.756 55.556 8.43 0.00 40.61 3.32
2779 2884 1.367195 CGTCGAAAAGCGCGTGTTT 60.367 52.632 8.43 8.52 40.61 2.83
2780 2885 1.576527 CGTCGAAAAGCGCGTGTTTG 61.577 55.000 8.43 3.72 40.61 2.93
2781 2886 0.315544 GTCGAAAAGCGCGTGTTTGA 60.316 50.000 8.43 6.19 40.61 2.69
2782 2887 0.584396 TCGAAAAGCGCGTGTTTGAT 59.416 45.000 8.43 0.00 40.61 2.57
2783 2888 0.967803 CGAAAAGCGCGTGTTTGATC 59.032 50.000 8.43 3.14 0.00 2.92
2784 2889 1.398451 CGAAAAGCGCGTGTTTGATCT 60.398 47.619 8.43 0.00 0.00 2.75
2785 2890 1.971962 GAAAAGCGCGTGTTTGATCTG 59.028 47.619 8.43 0.00 0.00 2.90
2786 2891 0.944386 AAAGCGCGTGTTTGATCTGT 59.056 45.000 8.43 0.00 0.00 3.41
2787 2892 0.944386 AAGCGCGTGTTTGATCTGTT 59.056 45.000 8.43 0.00 0.00 3.16
2788 2893 0.944386 AGCGCGTGTTTGATCTGTTT 59.056 45.000 8.43 0.00 0.00 2.83
2789 2894 1.333619 AGCGCGTGTTTGATCTGTTTT 59.666 42.857 8.43 0.00 0.00 2.43
2790 2895 2.116366 GCGCGTGTTTGATCTGTTTTT 58.884 42.857 8.43 0.00 0.00 1.94
2791 2896 2.097925 GCGCGTGTTTGATCTGTTTTTG 60.098 45.455 8.43 0.00 0.00 2.44
2792 2897 2.467305 CGCGTGTTTGATCTGTTTTTGG 59.533 45.455 0.00 0.00 0.00 3.28
2793 2898 3.443976 GCGTGTTTGATCTGTTTTTGGT 58.556 40.909 0.00 0.00 0.00 3.67
2794 2899 3.485743 GCGTGTTTGATCTGTTTTTGGTC 59.514 43.478 0.00 0.00 0.00 4.02
2795 2900 4.041723 CGTGTTTGATCTGTTTTTGGTCC 58.958 43.478 0.00 0.00 0.00 4.46
2796 2901 4.041723 GTGTTTGATCTGTTTTTGGTCCG 58.958 43.478 0.00 0.00 0.00 4.79
2797 2902 3.948473 TGTTTGATCTGTTTTTGGTCCGA 59.052 39.130 0.00 0.00 0.00 4.55
2798 2903 4.201970 TGTTTGATCTGTTTTTGGTCCGAC 60.202 41.667 0.00 0.00 0.00 4.79
2799 2904 2.139917 TGATCTGTTTTTGGTCCGACG 58.860 47.619 0.00 0.00 0.00 5.12
2800 2905 1.463444 GATCTGTTTTTGGTCCGACGG 59.537 52.381 7.84 7.84 0.00 4.79
2801 2906 0.178533 TCTGTTTTTGGTCCGACGGT 59.821 50.000 14.79 0.00 0.00 4.83
2802 2907 0.584876 CTGTTTTTGGTCCGACGGTC 59.415 55.000 14.79 8.37 0.00 4.79
2803 2908 1.152989 TGTTTTTGGTCCGACGGTCG 61.153 55.000 22.88 22.88 40.07 4.79
2804 2909 2.246042 TTTTTGGTCCGACGGTCGC 61.246 57.895 24.26 11.90 38.82 5.19
2805 2910 2.919960 TTTTTGGTCCGACGGTCGCA 62.920 55.000 24.26 14.33 38.82 5.10
2806 2911 3.851845 TTTGGTCCGACGGTCGCAG 62.852 63.158 24.26 12.30 38.82 5.18
2821 2926 4.292178 CAGGGCGATCGGAGGCTC 62.292 72.222 18.30 5.78 0.00 4.70
2834 2939 4.760047 GGCTCCGGCGCAAGAGAA 62.760 66.667 25.07 1.91 39.81 2.87
2835 2940 2.742372 GCTCCGGCGCAAGAGAAA 60.742 61.111 25.07 0.00 43.02 2.52
2836 2941 2.325082 GCTCCGGCGCAAGAGAAAA 61.325 57.895 25.07 0.00 43.02 2.29
2837 2942 1.790387 CTCCGGCGCAAGAGAAAAG 59.210 57.895 18.28 0.00 43.02 2.27
2838 2943 2.176792 CCGGCGCAAGAGAAAAGC 59.823 61.111 10.83 0.00 43.02 3.51
2843 2948 4.424266 GCAAGAGAAAAGCGCGAC 57.576 55.556 12.10 0.04 0.00 5.19
2844 2949 1.862806 GCAAGAGAAAAGCGCGACT 59.137 52.632 12.10 3.13 0.00 4.18
2845 2950 0.451792 GCAAGAGAAAAGCGCGACTG 60.452 55.000 12.10 0.00 0.00 3.51
2846 2951 0.164647 CAAGAGAAAAGCGCGACTGG 59.835 55.000 12.10 0.00 0.00 4.00
2847 2952 1.569479 AAGAGAAAAGCGCGACTGGC 61.569 55.000 12.10 0.00 38.69 4.85
2848 2953 3.028366 GAGAAAAGCGCGACTGGCC 62.028 63.158 12.10 0.00 38.94 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 8.986929 AGTAGCAGCAAGGAAGAAATATAATT 57.013 30.769 0.00 0.00 0.00 1.40
8 9 8.986929 AAGTAGCAGCAAGGAAGAAATATAAT 57.013 30.769 0.00 0.00 0.00 1.28
9 10 7.499232 GGAAGTAGCAGCAAGGAAGAAATATAA 59.501 37.037 0.00 0.00 0.00 0.98
10 11 6.992715 GGAAGTAGCAGCAAGGAAGAAATATA 59.007 38.462 0.00 0.00 0.00 0.86
11 12 5.825151 GGAAGTAGCAGCAAGGAAGAAATAT 59.175 40.000 0.00 0.00 0.00 1.28
12 13 5.045578 AGGAAGTAGCAGCAAGGAAGAAATA 60.046 40.000 0.00 0.00 0.00 1.40
13 14 4.013050 GGAAGTAGCAGCAAGGAAGAAAT 58.987 43.478 0.00 0.00 0.00 2.17
14 15 3.073062 AGGAAGTAGCAGCAAGGAAGAAA 59.927 43.478 0.00 0.00 0.00 2.52
15 16 2.639839 AGGAAGTAGCAGCAAGGAAGAA 59.360 45.455 0.00 0.00 0.00 2.52
16 17 2.234908 GAGGAAGTAGCAGCAAGGAAGA 59.765 50.000 0.00 0.00 0.00 2.87
17 18 2.235898 AGAGGAAGTAGCAGCAAGGAAG 59.764 50.000 0.00 0.00 0.00 3.46
18 19 2.234908 GAGAGGAAGTAGCAGCAAGGAA 59.765 50.000 0.00 0.00 0.00 3.36
19 20 1.827969 GAGAGGAAGTAGCAGCAAGGA 59.172 52.381 0.00 0.00 0.00 3.36
20 21 1.552337 TGAGAGGAAGTAGCAGCAAGG 59.448 52.381 0.00 0.00 0.00 3.61
21 22 3.132646 AGATGAGAGGAAGTAGCAGCAAG 59.867 47.826 0.00 0.00 0.00 4.01
22 23 3.102972 AGATGAGAGGAAGTAGCAGCAA 58.897 45.455 0.00 0.00 0.00 3.91
23 24 2.744760 AGATGAGAGGAAGTAGCAGCA 58.255 47.619 0.00 0.00 0.00 4.41
24 25 3.456280 CAAGATGAGAGGAAGTAGCAGC 58.544 50.000 0.00 0.00 0.00 5.25
25 26 3.181467 CCCAAGATGAGAGGAAGTAGCAG 60.181 52.174 0.00 0.00 0.00 4.24
26 27 2.768527 CCCAAGATGAGAGGAAGTAGCA 59.231 50.000 0.00 0.00 0.00 3.49
27 28 3.034635 TCCCAAGATGAGAGGAAGTAGC 58.965 50.000 0.00 0.00 0.00 3.58
28 29 5.147032 AGATCCCAAGATGAGAGGAAGTAG 58.853 45.833 0.00 0.00 30.90 2.57
29 30 5.149584 AGATCCCAAGATGAGAGGAAGTA 57.850 43.478 0.00 0.00 30.90 2.24
30 31 4.006247 AGATCCCAAGATGAGAGGAAGT 57.994 45.455 0.00 0.00 30.90 3.01
31 32 5.147032 AGTAGATCCCAAGATGAGAGGAAG 58.853 45.833 0.00 0.00 30.90 3.46
32 33 5.144100 GAGTAGATCCCAAGATGAGAGGAA 58.856 45.833 0.00 0.00 30.90 3.36
33 34 4.448493 GGAGTAGATCCCAAGATGAGAGGA 60.448 50.000 0.00 0.00 43.01 3.71
34 35 3.831911 GGAGTAGATCCCAAGATGAGAGG 59.168 52.174 0.00 0.00 43.01 3.69
46 47 2.422871 CCGAACGGAGGGAGTAGATCC 61.423 61.905 7.53 0.00 42.14 3.36
47 48 0.953003 CCGAACGGAGGGAGTAGATC 59.047 60.000 7.53 0.00 37.50 2.75
48 49 0.549950 TCCGAACGGAGGGAGTAGAT 59.450 55.000 12.04 0.00 39.76 1.98
49 50 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
50 51 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
51 52 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
52 53 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
53 54 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
54 55 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
55 56 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
56 57 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
57 58 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
58 59 3.947910 AGACAAGTAATTCCGAACGGA 57.052 42.857 12.04 12.04 43.52 4.69
59 60 3.991773 TCAAGACAAGTAATTCCGAACGG 59.008 43.478 6.94 6.94 0.00 4.44
60 61 5.585500 TTCAAGACAAGTAATTCCGAACG 57.415 39.130 0.00 0.00 0.00 3.95
61 62 7.326063 CCATTTTCAAGACAAGTAATTCCGAAC 59.674 37.037 0.00 0.00 0.00 3.95
62 63 7.229707 TCCATTTTCAAGACAAGTAATTCCGAA 59.770 33.333 0.00 0.00 0.00 4.30
63 64 6.712998 TCCATTTTCAAGACAAGTAATTCCGA 59.287 34.615 0.00 0.00 0.00 4.55
64 65 6.908825 TCCATTTTCAAGACAAGTAATTCCG 58.091 36.000 0.00 0.00 0.00 4.30
65 66 8.306761 ACATCCATTTTCAAGACAAGTAATTCC 58.693 33.333 0.00 0.00 0.00 3.01
69 70 9.739276 AGATACATCCATTTTCAAGACAAGTAA 57.261 29.630 0.00 0.00 0.00 2.24
71 72 9.388506 CTAGATACATCCATTTTCAAGACAAGT 57.611 33.333 0.00 0.00 0.00 3.16
72 73 9.605275 TCTAGATACATCCATTTTCAAGACAAG 57.395 33.333 0.00 0.00 0.00 3.16
73 74 9.958180 TTCTAGATACATCCATTTTCAAGACAA 57.042 29.630 0.00 0.00 0.00 3.18
74 75 9.383519 GTTCTAGATACATCCATTTTCAAGACA 57.616 33.333 0.00 0.00 0.00 3.41
75 76 9.606631 AGTTCTAGATACATCCATTTTCAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
105 106 8.391859 CGCAGAAATAGATGTATCTAGACGTAT 58.608 37.037 0.00 0.00 42.20 3.06
106 107 7.601508 TCGCAGAAATAGATGTATCTAGACGTA 59.398 37.037 0.00 0.00 42.20 3.57
107 108 6.427242 TCGCAGAAATAGATGTATCTAGACGT 59.573 38.462 0.00 0.00 42.20 4.34
108 109 6.739100 GTCGCAGAAATAGATGTATCTAGACG 59.261 42.308 0.00 5.27 39.84 4.18
109 110 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
110 111 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
111 112 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
112 113 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
113 114 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
114 115 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
115 116 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
116 117 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
117 118 7.011482 GGAATTACTTGTCGCAGAAATAGATGT 59.989 37.037 0.00 0.00 39.69 3.06
118 119 7.348201 GGAATTACTTGTCGCAGAAATAGATG 58.652 38.462 0.00 0.00 39.69 2.90
119 120 6.201044 CGGAATTACTTGTCGCAGAAATAGAT 59.799 38.462 0.00 0.00 39.69 1.98
120 121 5.518847 CGGAATTACTTGTCGCAGAAATAGA 59.481 40.000 0.00 0.00 39.69 1.98
121 122 5.518847 TCGGAATTACTTGTCGCAGAAATAG 59.481 40.000 0.00 0.00 39.69 1.73
122 123 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
123 124 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
124 125 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
125 126 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
126 127 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
127 128 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
128 129 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
129 130 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
130 131 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
131 132 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
132 133 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
133 134 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
134 135 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
135 136 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
136 137 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
137 138 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
138 139 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
139 140 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
140 141 2.092212 ACTATACTCCCTCCGTTCGGAA 60.092 50.000 14.79 0.00 33.41 4.30
141 142 1.492176 ACTATACTCCCTCCGTTCGGA 59.508 52.381 13.34 13.34 0.00 4.55
142 143 1.878734 GACTATACTCCCTCCGTTCGG 59.121 57.143 4.74 4.74 0.00 4.30
143 144 1.878734 GGACTATACTCCCTCCGTTCG 59.121 57.143 0.00 0.00 0.00 3.95
144 145 2.622470 GTGGACTATACTCCCTCCGTTC 59.378 54.545 0.00 0.00 0.00 3.95
145 146 2.244252 AGTGGACTATACTCCCTCCGTT 59.756 50.000 0.00 0.00 0.00 4.44
146 147 1.851653 AGTGGACTATACTCCCTCCGT 59.148 52.381 0.00 0.00 0.00 4.69
147 148 2.660670 AGTGGACTATACTCCCTCCG 57.339 55.000 0.00 0.00 0.00 4.63
148 149 4.997545 TCTAGTGGACTATACTCCCTCC 57.002 50.000 0.00 0.00 0.00 4.30
149 150 6.129414 TCATCTAGTGGACTATACTCCCTC 57.871 45.833 0.00 0.00 0.00 4.30
150 151 6.468066 CCTTCATCTAGTGGACTATACTCCCT 60.468 46.154 0.00 0.00 0.00 4.20
151 152 5.712917 CCTTCATCTAGTGGACTATACTCCC 59.287 48.000 0.00 0.00 0.00 4.30
152 153 6.544650 TCCTTCATCTAGTGGACTATACTCC 58.455 44.000 0.00 0.00 0.00 3.85
153 154 6.657541 CCTCCTTCATCTAGTGGACTATACTC 59.342 46.154 0.00 0.00 0.00 2.59
154 155 6.333168 TCCTCCTTCATCTAGTGGACTATACT 59.667 42.308 0.00 0.00 0.00 2.12
155 156 6.544650 TCCTCCTTCATCTAGTGGACTATAC 58.455 44.000 0.00 0.00 0.00 1.47
265 269 2.645951 TAGCTGGTGGGGGTAGTTAA 57.354 50.000 0.00 0.00 0.00 2.01
325 330 2.945447 TATTCAAACATGCAGCTGGC 57.055 45.000 17.12 8.54 45.13 4.85
356 361 3.244345 TCACTTACTTTCAACACGCGAAG 59.756 43.478 15.93 7.35 0.00 3.79
359 364 3.244345 TCTTCACTTACTTTCAACACGCG 59.756 43.478 3.53 3.53 0.00 6.01
361 366 6.772078 AGTTTCTTCACTTACTTTCAACACG 58.228 36.000 0.00 0.00 0.00 4.49
396 401 6.839033 TGTATATGAGATAATCGTCGTGGAC 58.161 40.000 0.00 0.00 0.00 4.02
433 438 6.356556 TGCTACCATGAACTAATTGCACTAT 58.643 36.000 0.00 0.00 0.00 2.12
434 439 5.739959 TGCTACCATGAACTAATTGCACTA 58.260 37.500 0.00 0.00 0.00 2.74
435 440 4.588899 TGCTACCATGAACTAATTGCACT 58.411 39.130 0.00 0.00 0.00 4.40
440 474 5.711976 ACTGCTTTGCTACCATGAACTAATT 59.288 36.000 0.00 0.00 0.00 1.40
476 510 9.881649 TTGCAATGAACTAATGGCATTATAAAA 57.118 25.926 19.55 7.64 36.38 1.52
580 637 1.963338 GCATGTAGGATGGCTCGGC 60.963 63.158 0.00 0.00 0.00 5.54
667 724 7.637631 AACAAAACAAAGGCCAACATAAAAT 57.362 28.000 5.01 0.00 0.00 1.82
669 726 7.331791 ACTAACAAAACAAAGGCCAACATAAA 58.668 30.769 5.01 0.00 0.00 1.40
673 730 4.810191 ACTAACAAAACAAAGGCCAACA 57.190 36.364 5.01 0.00 0.00 3.33
747 805 8.403236 CACCTACTAATAATTTGGTACTTTGCC 58.597 37.037 0.00 0.00 0.00 4.52
765 823 3.635373 CGATGGCTTTACCTCACCTACTA 59.365 47.826 0.00 0.00 40.22 1.82
766 824 2.431057 CGATGGCTTTACCTCACCTACT 59.569 50.000 0.00 0.00 40.22 2.57
767 825 2.483188 CCGATGGCTTTACCTCACCTAC 60.483 54.545 0.00 0.00 40.22 3.18
855 913 5.636123 AGCGAGAGAGATCTAATAAAGGGA 58.364 41.667 0.00 0.00 0.00 4.20
859 917 7.334844 TGTTGAGCGAGAGAGATCTAATAAA 57.665 36.000 0.00 0.00 0.00 1.40
1164 1232 2.561885 CAGCAGAAGCAGCAGCAC 59.438 61.111 3.17 0.00 45.49 4.40
1198 1266 2.716864 GACTAGCGCGAGGAGGAC 59.283 66.667 21.83 4.18 0.00 3.85
1243 1311 4.752879 TTGCGGCCGGTAGAGCAC 62.753 66.667 29.38 7.83 39.51 4.40
1702 1770 1.366854 CCCTTTACCTTCTTCGGCGC 61.367 60.000 0.00 0.00 0.00 6.53
2063 2133 5.178623 TCGTAACCAGCAAGTGACTAATTTG 59.821 40.000 0.00 0.00 0.00 2.32
2102 2172 8.989980 GCCTGAATGATAGTAGTAATAACAACC 58.010 37.037 0.00 0.00 0.00 3.77
2105 2175 9.143155 TGAGCCTGAATGATAGTAGTAATAACA 57.857 33.333 0.00 0.00 0.00 2.41
2110 2180 7.725844 TCAGATGAGCCTGAATGATAGTAGTAA 59.274 37.037 0.00 0.00 39.96 2.24
2114 2184 6.983906 TTCAGATGAGCCTGAATGATAGTA 57.016 37.500 0.00 0.00 45.25 1.82
2183 2279 8.344446 ACACAATCACATGTACTACTACTACA 57.656 34.615 0.00 0.00 30.84 2.74
2191 2294 4.794278 ACCGACACAATCACATGTACTA 57.206 40.909 0.00 0.00 30.84 1.82
2216 2321 3.505293 GCTGGACAAGCTGAAAGATTCTT 59.495 43.478 0.00 0.00 38.98 2.52
2229 2334 0.877071 ACTCAAATGCGCTGGACAAG 59.123 50.000 9.73 1.70 0.00 3.16
2284 2389 5.885230 TCACATGACAAACATCTCCATTC 57.115 39.130 0.00 0.00 37.07 2.67
2317 2422 0.526524 CAAAACCAAGCCGCGTTTCA 60.527 50.000 4.92 0.00 31.09 2.69
2442 2547 1.940613 CCGGTAGTTAATTGCTCCAGC 59.059 52.381 0.00 0.00 42.50 4.85
2609 2714 1.129809 CGCGCGTACACTTGAAAGG 59.870 57.895 24.19 0.00 0.00 3.11
2625 2730 4.918201 AGCCTAATCTGCCCGCGC 62.918 66.667 0.00 0.00 0.00 6.86
2626 2731 2.663188 GAGCCTAATCTGCCCGCG 60.663 66.667 0.00 0.00 0.00 6.46
2627 2732 2.663188 CGAGCCTAATCTGCCCGC 60.663 66.667 0.00 0.00 0.00 6.13
2628 2733 1.300233 GACGAGCCTAATCTGCCCG 60.300 63.158 0.00 0.00 35.94 6.13
2629 2734 0.530870 GTGACGAGCCTAATCTGCCC 60.531 60.000 0.00 0.00 0.00 5.36
2630 2735 0.872021 CGTGACGAGCCTAATCTGCC 60.872 60.000 0.00 0.00 0.00 4.85
2631 2736 0.872021 CCGTGACGAGCCTAATCTGC 60.872 60.000 6.54 0.00 0.00 4.26
2632 2737 0.249073 CCCGTGACGAGCCTAATCTG 60.249 60.000 6.54 0.00 0.00 2.90
2633 2738 0.395311 TCCCGTGACGAGCCTAATCT 60.395 55.000 6.54 0.00 0.00 2.40
2634 2739 0.674534 ATCCCGTGACGAGCCTAATC 59.325 55.000 6.54 0.00 0.00 1.75
2635 2740 1.612463 GTATCCCGTGACGAGCCTAAT 59.388 52.381 6.54 0.00 0.00 1.73
2636 2741 1.027357 GTATCCCGTGACGAGCCTAA 58.973 55.000 6.54 0.00 0.00 2.69
2637 2742 0.107066 TGTATCCCGTGACGAGCCTA 60.107 55.000 6.54 0.00 0.00 3.93
2638 2743 0.968901 TTGTATCCCGTGACGAGCCT 60.969 55.000 6.54 0.00 0.00 4.58
2639 2744 0.527817 CTTGTATCCCGTGACGAGCC 60.528 60.000 6.54 0.00 0.00 4.70
2640 2745 0.172803 ACTTGTATCCCGTGACGAGC 59.827 55.000 6.54 0.00 31.20 5.03
2641 2746 2.527100 GAACTTGTATCCCGTGACGAG 58.473 52.381 6.54 0.00 33.86 4.18
2642 2747 1.203052 GGAACTTGTATCCCGTGACGA 59.797 52.381 6.54 0.00 0.00 4.20
2643 2748 1.203994 AGGAACTTGTATCCCGTGACG 59.796 52.381 0.00 0.00 37.71 4.35
2651 2756 8.272190 GCTCTTGCTTGGAAGGAACTTGTATC 62.272 46.154 2.24 0.00 42.54 2.24
2652 2757 6.550870 GCTCTTGCTTGGAAGGAACTTGTAT 61.551 44.000 2.24 0.00 42.54 2.29
2653 2758 5.282126 GCTCTTGCTTGGAAGGAACTTGTA 61.282 45.833 2.24 0.00 42.54 2.41
2654 2759 4.555778 GCTCTTGCTTGGAAGGAACTTGT 61.556 47.826 2.24 0.00 42.54 3.16
2655 2760 2.030451 GCTCTTGCTTGGAAGGAACTTG 60.030 50.000 2.24 0.00 42.54 3.16
2656 2761 2.234143 GCTCTTGCTTGGAAGGAACTT 58.766 47.619 2.24 0.00 44.31 2.66
2657 2762 1.879796 CGCTCTTGCTTGGAAGGAACT 60.880 52.381 2.24 0.00 37.38 3.01
2658 2763 0.519077 CGCTCTTGCTTGGAAGGAAC 59.481 55.000 2.24 0.00 36.97 3.62
2659 2764 0.108585 ACGCTCTTGCTTGGAAGGAA 59.891 50.000 2.24 0.00 36.97 3.36
2660 2765 0.320771 GACGCTCTTGCTTGGAAGGA 60.321 55.000 2.24 0.00 36.97 3.36
2661 2766 0.321122 AGACGCTCTTGCTTGGAAGG 60.321 55.000 2.24 0.00 36.97 3.46
2662 2767 1.996191 GTAGACGCTCTTGCTTGGAAG 59.004 52.381 0.00 0.00 36.97 3.46
2663 2768 1.343142 TGTAGACGCTCTTGCTTGGAA 59.657 47.619 0.00 0.00 36.97 3.53
2664 2769 0.966179 TGTAGACGCTCTTGCTTGGA 59.034 50.000 0.00 0.00 36.97 3.53
2665 2770 1.354040 CTGTAGACGCTCTTGCTTGG 58.646 55.000 0.00 0.00 36.97 3.61
2666 2771 0.718343 GCTGTAGACGCTCTTGCTTG 59.282 55.000 0.00 0.00 36.97 4.01
2667 2772 0.390472 GGCTGTAGACGCTCTTGCTT 60.390 55.000 0.00 0.00 36.97 3.91
2668 2773 1.216710 GGCTGTAGACGCTCTTGCT 59.783 57.895 0.00 0.00 36.97 3.91
2669 2774 2.161486 CGGCTGTAGACGCTCTTGC 61.161 63.158 0.00 0.00 40.91 4.01
2670 2775 4.079090 CGGCTGTAGACGCTCTTG 57.921 61.111 0.00 0.00 40.91 3.02
2677 2782 4.509737 GGGGACGCGGCTGTAGAC 62.510 72.222 13.91 0.00 0.00 2.59
2679 2784 4.077184 TTGGGGACGCGGCTGTAG 62.077 66.667 13.91 0.00 0.00 2.74
2680 2785 4.382320 GTTGGGGACGCGGCTGTA 62.382 66.667 13.91 0.00 0.00 2.74
2684 2789 4.778143 ATCTGTTGGGGACGCGGC 62.778 66.667 12.47 7.53 0.00 6.53
2685 2790 2.511600 GATCTGTTGGGGACGCGG 60.512 66.667 12.47 0.00 0.00 6.46
2686 2791 2.511600 GGATCTGTTGGGGACGCG 60.512 66.667 3.53 3.53 0.00 6.01
2687 2792 0.322546 AAAGGATCTGTTGGGGACGC 60.323 55.000 0.00 0.00 0.00 5.19
2688 2793 2.500098 TCTAAAGGATCTGTTGGGGACG 59.500 50.000 0.00 0.00 0.00 4.79
2689 2794 4.709250 GATCTAAAGGATCTGTTGGGGAC 58.291 47.826 0.00 0.00 45.38 4.46
2714 2819 1.293924 TTTACACCGACGCCGAAAAA 58.706 45.000 0.00 0.00 38.22 1.94
2715 2820 1.293924 TTTTACACCGACGCCGAAAA 58.706 45.000 0.00 0.00 38.22 2.29
2716 2821 1.293924 TTTTTACACCGACGCCGAAA 58.706 45.000 0.00 0.00 38.22 3.46
2717 2822 2.983433 TTTTTACACCGACGCCGAA 58.017 47.368 0.00 0.00 38.22 4.30
2718 2823 4.746361 TTTTTACACCGACGCCGA 57.254 50.000 0.00 0.00 38.22 5.54
2732 2837 0.955905 CGTGATTGGGACGGGTTTTT 59.044 50.000 0.00 0.00 33.08 1.94
2733 2838 0.179012 ACGTGATTGGGACGGGTTTT 60.179 50.000 0.00 0.00 41.21 2.43
2734 2839 0.179012 AACGTGATTGGGACGGGTTT 60.179 50.000 0.00 0.00 41.21 3.27
2735 2840 0.179012 AAACGTGATTGGGACGGGTT 60.179 50.000 0.00 0.00 41.21 4.11
2736 2841 0.179012 AAAACGTGATTGGGACGGGT 60.179 50.000 0.00 0.00 41.21 5.28
2737 2842 0.519961 GAAAACGTGATTGGGACGGG 59.480 55.000 0.00 0.00 41.21 5.28
2738 2843 1.196808 CTGAAAACGTGATTGGGACGG 59.803 52.381 0.00 0.00 41.21 4.79
2739 2844 1.196808 CCTGAAAACGTGATTGGGACG 59.803 52.381 0.00 0.00 42.62 4.79
2740 2845 2.225727 GTCCTGAAAACGTGATTGGGAC 59.774 50.000 12.25 12.25 35.85 4.46
2741 2846 2.500229 GTCCTGAAAACGTGATTGGGA 58.500 47.619 0.00 0.00 0.00 4.37
2742 2847 1.196808 CGTCCTGAAAACGTGATTGGG 59.803 52.381 0.00 0.00 35.47 4.12
2743 2848 2.594529 CGTCCTGAAAACGTGATTGG 57.405 50.000 0.00 0.00 35.47 3.16
2750 2855 2.887733 CTTTTCGACGTCCTGAAAACG 58.112 47.619 20.51 14.97 45.37 3.60
2751 2856 2.636519 GCTTTTCGACGTCCTGAAAAC 58.363 47.619 20.51 15.47 38.70 2.43
2752 2857 1.259507 CGCTTTTCGACGTCCTGAAAA 59.740 47.619 22.01 22.01 40.65 2.29
2753 2858 0.856641 CGCTTTTCGACGTCCTGAAA 59.143 50.000 10.58 11.88 41.67 2.69
2754 2859 1.554042 GCGCTTTTCGACGTCCTGAA 61.554 55.000 10.58 5.86 41.67 3.02
2755 2860 2.019951 GCGCTTTTCGACGTCCTGA 61.020 57.895 10.58 0.00 41.67 3.86
2756 2861 2.470286 GCGCTTTTCGACGTCCTG 59.530 61.111 10.58 0.00 41.67 3.86
2757 2862 3.103911 CGCGCTTTTCGACGTCCT 61.104 61.111 10.58 0.00 41.67 3.85
2758 2863 3.400590 ACGCGCTTTTCGACGTCC 61.401 61.111 10.58 0.00 43.41 4.79
2759 2864 2.201885 CACGCGCTTTTCGACGTC 60.202 61.111 5.73 5.18 44.39 4.34
2760 2865 2.027628 AAACACGCGCTTTTCGACGT 62.028 50.000 5.73 0.00 46.01 4.34
2761 2866 1.367195 AAACACGCGCTTTTCGACG 60.367 52.632 5.73 0.00 41.67 5.12
2762 2867 0.315544 TCAAACACGCGCTTTTCGAC 60.316 50.000 5.73 0.00 41.67 4.20
2763 2868 0.584396 ATCAAACACGCGCTTTTCGA 59.416 45.000 5.73 6.80 41.67 3.71
2764 2869 0.967803 GATCAAACACGCGCTTTTCG 59.032 50.000 5.73 1.46 42.12 3.46
2765 2870 1.971962 CAGATCAAACACGCGCTTTTC 59.028 47.619 5.73 0.00 0.00 2.29
2766 2871 1.333619 ACAGATCAAACACGCGCTTTT 59.666 42.857 5.73 2.19 0.00 2.27
2767 2872 0.944386 ACAGATCAAACACGCGCTTT 59.056 45.000 5.73 0.27 0.00 3.51
2768 2873 0.944386 AACAGATCAAACACGCGCTT 59.056 45.000 5.73 0.00 0.00 4.68
2769 2874 0.944386 AAACAGATCAAACACGCGCT 59.056 45.000 5.73 0.00 0.00 5.92
2770 2875 1.753956 AAAACAGATCAAACACGCGC 58.246 45.000 5.73 0.00 0.00 6.86
2771 2876 2.467305 CCAAAAACAGATCAAACACGCG 59.533 45.455 3.53 3.53 0.00 6.01
2772 2877 3.443976 ACCAAAAACAGATCAAACACGC 58.556 40.909 0.00 0.00 0.00 5.34
2773 2878 4.041723 GGACCAAAAACAGATCAAACACG 58.958 43.478 0.00 0.00 0.00 4.49
2774 2879 4.041723 CGGACCAAAAACAGATCAAACAC 58.958 43.478 0.00 0.00 0.00 3.32
2775 2880 3.948473 TCGGACCAAAAACAGATCAAACA 59.052 39.130 0.00 0.00 0.00 2.83
2776 2881 4.287720 GTCGGACCAAAAACAGATCAAAC 58.712 43.478 0.00 0.00 0.00 2.93
2777 2882 3.002862 CGTCGGACCAAAAACAGATCAAA 59.997 43.478 1.91 0.00 0.00 2.69
2778 2883 2.546368 CGTCGGACCAAAAACAGATCAA 59.454 45.455 1.91 0.00 0.00 2.57
2779 2884 2.139917 CGTCGGACCAAAAACAGATCA 58.860 47.619 1.91 0.00 0.00 2.92
2780 2885 1.463444 CCGTCGGACCAAAAACAGATC 59.537 52.381 4.91 0.00 0.00 2.75
2781 2886 1.202722 ACCGTCGGACCAAAAACAGAT 60.203 47.619 20.51 0.00 0.00 2.90
2782 2887 0.178533 ACCGTCGGACCAAAAACAGA 59.821 50.000 20.51 0.00 0.00 3.41
2783 2888 0.584876 GACCGTCGGACCAAAAACAG 59.415 55.000 20.51 0.00 0.00 3.16
2784 2889 1.152989 CGACCGTCGGACCAAAAACA 61.153 55.000 20.51 0.00 36.00 2.83
2785 2890 1.566077 CGACCGTCGGACCAAAAAC 59.434 57.895 20.51 0.00 36.00 2.43
2786 2891 2.246042 GCGACCGTCGGACCAAAAA 61.246 57.895 20.51 0.00 40.84 1.94
2787 2892 2.662527 GCGACCGTCGGACCAAAA 60.663 61.111 20.51 0.00 40.84 2.44
2788 2893 3.851845 CTGCGACCGTCGGACCAAA 62.852 63.158 20.51 0.00 40.84 3.28
2789 2894 4.351938 CTGCGACCGTCGGACCAA 62.352 66.667 20.51 0.31 40.84 3.67
2804 2909 4.292178 GAGCCTCCGATCGCCCTG 62.292 72.222 10.32 0.00 0.00 4.45
2817 2922 4.760047 TTCTCTTGCGCCGGAGCC 62.760 66.667 27.98 10.16 36.02 4.70
2818 2923 2.245714 CTTTTCTCTTGCGCCGGAGC 62.246 60.000 24.58 24.58 37.71 4.70
2819 2924 1.790387 CTTTTCTCTTGCGCCGGAG 59.210 57.895 5.05 17.14 0.00 4.63
2820 2925 2.325082 GCTTTTCTCTTGCGCCGGA 61.325 57.895 5.05 1.50 0.00 5.14
2821 2926 2.176792 GCTTTTCTCTTGCGCCGG 59.823 61.111 4.18 0.00 0.00 6.13
2822 2927 2.202222 CGCTTTTCTCTTGCGCCG 60.202 61.111 4.18 0.00 43.08 6.46
2826 2931 0.451792 CAGTCGCGCTTTTCTCTTGC 60.452 55.000 5.56 0.00 0.00 4.01
2827 2932 0.164647 CCAGTCGCGCTTTTCTCTTG 59.835 55.000 5.56 0.00 0.00 3.02
2828 2933 1.569479 GCCAGTCGCGCTTTTCTCTT 61.569 55.000 5.56 0.00 0.00 2.85
2829 2934 2.029844 GCCAGTCGCGCTTTTCTCT 61.030 57.895 5.56 0.00 0.00 3.10
2830 2935 2.476499 GCCAGTCGCGCTTTTCTC 59.524 61.111 5.56 0.00 0.00 2.87
2831 2936 3.050275 GGCCAGTCGCGCTTTTCT 61.050 61.111 5.56 0.00 38.94 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.