Multiple sequence alignment - TraesCS1A01G125500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G125500 chr1A 100.000 4037 0 0 2312 6348 149513466 149509430 0.000000e+00 7456.0
1 TraesCS1A01G125500 chr1A 100.000 1723 0 0 1 1723 149515777 149514055 0.000000e+00 3182.0
2 TraesCS1A01G125500 chr1A 99.679 935 3 0 3695 4629 389872847 389873781 0.000000e+00 1711.0
3 TraesCS1A01G125500 chr1A 99.457 921 5 0 3698 4618 520766862 520765942 0.000000e+00 1674.0
4 TraesCS1A01G125500 chr1A 82.271 1004 84 38 3698 4629 575690980 575691961 0.000000e+00 782.0
5 TraesCS1A01G125500 chr1A 89.663 445 42 3 5828 6270 154580022 154579580 1.190000e-156 564.0
6 TraesCS1A01G125500 chr1A 94.444 90 4 1 6259 6348 584070210 584070122 3.090000e-28 137.0
7 TraesCS1A01G125500 chr1B 96.810 1536 30 7 198 1723 196465820 196464294 0.000000e+00 2547.0
8 TraesCS1A01G125500 chr1B 95.866 1016 27 7 2313 3323 196464229 196463224 0.000000e+00 1629.0
9 TraesCS1A01G125500 chr1B 97.188 569 10 4 4961 5526 196462465 196461900 0.000000e+00 957.0
10 TraesCS1A01G125500 chr1B 83.166 998 83 33 3698 4629 657187193 657186215 0.000000e+00 833.0
11 TraesCS1A01G125500 chr1B 96.073 382 11 3 3317 3697 196463147 196462769 2.510000e-173 619.0
12 TraesCS1A01G125500 chr1B 97.213 287 8 0 4627 4913 196462779 196462493 2.660000e-133 486.0
13 TraesCS1A01G125500 chr1B 97.297 37 1 0 4931 4967 196462510 196462474 5.310000e-06 63.9
14 TraesCS1A01G125500 chr1B 97.297 37 0 1 5780 5816 432213090 432213125 1.910000e-05 62.1
15 TraesCS1A01G125500 chr1D 94.862 1557 37 9 178 1723 141273656 141275180 0.000000e+00 2392.0
16 TraesCS1A01G125500 chr1D 94.975 1393 43 11 2313 3697 141275245 141276618 0.000000e+00 2159.0
17 TraesCS1A01G125500 chr1D 93.255 1364 64 13 4931 6270 141276877 141278236 0.000000e+00 1984.0
18 TraesCS1A01G125500 chr1D 84.176 752 67 29 3904 4626 354768450 354769178 0.000000e+00 682.0
19 TraesCS1A01G125500 chr1D 97.213 287 8 0 4627 4913 141276608 141276894 2.660000e-133 486.0
20 TraesCS1A01G125500 chr1D 80.505 277 32 10 3698 3956 398943482 398943754 6.490000e-45 193.0
21 TraesCS1A01G125500 chr4B 99.893 932 1 0 3698 4629 500254338 500253407 0.000000e+00 1716.0
22 TraesCS1A01G125500 chr4B 83.784 592 54 25 4068 4629 124595960 124596539 2.030000e-144 523.0
23 TraesCS1A01G125500 chr4B 93.617 94 4 2 6256 6348 40784480 40784388 8.580000e-29 139.0
24 TraesCS1A01G125500 chr4B 91.176 102 5 4 6250 6348 39295524 39295624 1.110000e-27 135.0
25 TraesCS1A01G125500 chr2D 99.893 932 1 0 3698 4629 542779062 542779993 0.000000e+00 1716.0
26 TraesCS1A01G125500 chr2D 89.663 445 42 3 5828 6270 120688005 120687563 1.190000e-156 564.0
27 TraesCS1A01G125500 chr2D 89.262 447 43 5 5827 6270 324103486 324103930 7.190000e-154 555.0
28 TraesCS1A01G125500 chrUn 97.866 937 16 3 3697 4629 307772983 307772047 0.000000e+00 1616.0
29 TraesCS1A01G125500 chr6B 92.696 753 38 12 3698 4448 4550984 4551721 0.000000e+00 1070.0
30 TraesCS1A01G125500 chr6B 78.378 555 59 34 4078 4620 4817430 4816925 2.880000e-78 303.0
31 TraesCS1A01G125500 chr3D 89.709 447 40 5 5827 6270 496494817 496494374 3.320000e-157 566.0
32 TraesCS1A01G125500 chr3D 80.505 277 32 10 3698 3956 19290067 19289795 6.490000e-45 193.0
33 TraesCS1A01G125500 chr4A 89.462 446 43 3 5827 6270 61099942 61100385 1.550000e-155 560.0
34 TraesCS1A01G125500 chr4A 96.471 85 3 0 6264 6348 718207562 718207478 2.390000e-29 141.0
35 TraesCS1A01G125500 chr7A 89.438 445 41 5 5828 6269 245995403 245994962 2.000000e-154 556.0
36 TraesCS1A01G125500 chr7A 96.471 85 3 0 6264 6348 647304613 647304697 2.390000e-29 141.0
37 TraesCS1A01G125500 chr5A 89.262 447 45 3 5826 6270 484553969 484553524 2.000000e-154 556.0
38 TraesCS1A01G125500 chr5A 91.919 99 5 2 6252 6348 402092622 402092719 1.110000e-27 135.0
39 TraesCS1A01G125500 chr6D 89.087 449 45 3 5824 6270 394370062 394370508 7.190000e-154 555.0
40 TraesCS1A01G125500 chr3A 84.576 590 51 24 4068 4629 46568345 46568922 3.350000e-152 549.0
41 TraesCS1A01G125500 chr3A 84.576 590 51 24 4068 4629 163805021 163805598 3.350000e-152 549.0
42 TraesCS1A01G125500 chr3A 93.548 93 4 2 6258 6348 43285123 43285031 3.090000e-28 137.0
43 TraesCS1A01G125500 chr2A 95.455 88 4 0 6261 6348 676458905 676458992 2.390000e-29 141.0
44 TraesCS1A01G125500 chr5B 92.553 94 7 0 6255 6348 697185051 697184958 1.110000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G125500 chr1A 149509430 149515777 6347 True 5319.000000 7456 100.000000 1 6348 2 chr1A.!!$R4 6347
1 TraesCS1A01G125500 chr1A 389872847 389873781 934 False 1711.000000 1711 99.679000 3695 4629 1 chr1A.!!$F1 934
2 TraesCS1A01G125500 chr1A 520765942 520766862 920 True 1674.000000 1674 99.457000 3698 4618 1 chr1A.!!$R2 920
3 TraesCS1A01G125500 chr1A 575690980 575691961 981 False 782.000000 782 82.271000 3698 4629 1 chr1A.!!$F2 931
4 TraesCS1A01G125500 chr1B 196461900 196465820 3920 True 1050.316667 2547 96.741167 198 5526 6 chr1B.!!$R2 5328
5 TraesCS1A01G125500 chr1B 657186215 657187193 978 True 833.000000 833 83.166000 3698 4629 1 chr1B.!!$R1 931
6 TraesCS1A01G125500 chr1D 141273656 141278236 4580 False 1755.250000 2392 95.076250 178 6270 4 chr1D.!!$F3 6092
7 TraesCS1A01G125500 chr1D 354768450 354769178 728 False 682.000000 682 84.176000 3904 4626 1 chr1D.!!$F1 722
8 TraesCS1A01G125500 chr4B 500253407 500254338 931 True 1716.000000 1716 99.893000 3698 4629 1 chr4B.!!$R2 931
9 TraesCS1A01G125500 chr4B 124595960 124596539 579 False 523.000000 523 83.784000 4068 4629 1 chr4B.!!$F2 561
10 TraesCS1A01G125500 chr2D 542779062 542779993 931 False 1716.000000 1716 99.893000 3698 4629 1 chr2D.!!$F2 931
11 TraesCS1A01G125500 chrUn 307772047 307772983 936 True 1616.000000 1616 97.866000 3697 4629 1 chrUn.!!$R1 932
12 TraesCS1A01G125500 chr6B 4550984 4551721 737 False 1070.000000 1070 92.696000 3698 4448 1 chr6B.!!$F1 750
13 TraesCS1A01G125500 chr6B 4816925 4817430 505 True 303.000000 303 78.378000 4078 4620 1 chr6B.!!$R1 542
14 TraesCS1A01G125500 chr3A 46568345 46568922 577 False 549.000000 549 84.576000 4068 4629 1 chr3A.!!$F1 561
15 TraesCS1A01G125500 chr3A 163805021 163805598 577 False 549.000000 549 84.576000 4068 4629 1 chr3A.!!$F2 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.037232 AAGCACGCCTAACCTGAGAC 60.037 55.000 0.00 0.00 0.00 3.36 F
333 335 0.445436 GATGATGAATGGATCGCCGC 59.555 55.000 0.00 0.00 36.79 6.53 F
1052 1080 0.749649 ATCGGCCAGCTCTTGAGTAG 59.250 55.000 2.24 0.00 0.00 2.57 F
2338 2370 3.263425 GGTGGTGTAATCTCTTCCTTGGA 59.737 47.826 0.00 0.00 0.00 3.53 F
3203 3242 0.946221 GAGGCTGTTATCGGCGGATG 60.946 60.000 16.41 1.35 46.03 3.51 F
4635 4918 0.460284 AGCTACGCCACTGTATGTGC 60.460 55.000 0.00 0.00 44.92 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1052 1080 3.668656 GCAAACTGATTTACCGTTGCTTC 59.331 43.478 0.00 0.00 0.00 3.86 R
1479 1511 4.778143 AGCATGGCGACGAACCCC 62.778 66.667 0.00 0.00 0.00 4.95 R
2338 2370 2.029649 GGCAGTGCATCAAACAGTGAAT 60.030 45.455 18.61 0.00 40.50 2.57 R
3517 3642 1.345741 CAGTTGCTCCTGGAGAGTGAA 59.654 52.381 27.53 10.33 45.21 3.18 R
4933 5216 0.318441 GGGCAAGGGCAAAAGAGAAC 59.682 55.000 0.00 0.00 43.71 3.01 R
5630 5939 1.061799 GCACGAATCACAAAGCAGCG 61.062 55.000 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.998316 TTTTGGTTGCCCCTTTTCAG 57.002 45.000 0.00 0.00 0.00 3.02
23 24 2.166907 TTTGGTTGCCCCTTTTCAGA 57.833 45.000 0.00 0.00 0.00 3.27
24 25 2.397044 TTGGTTGCCCCTTTTCAGAT 57.603 45.000 0.00 0.00 0.00 2.90
25 26 2.397044 TGGTTGCCCCTTTTCAGATT 57.603 45.000 0.00 0.00 0.00 2.40
26 27 2.247358 TGGTTGCCCCTTTTCAGATTC 58.753 47.619 0.00 0.00 0.00 2.52
27 28 2.247358 GGTTGCCCCTTTTCAGATTCA 58.753 47.619 0.00 0.00 0.00 2.57
28 29 2.632512 GGTTGCCCCTTTTCAGATTCAA 59.367 45.455 0.00 0.00 0.00 2.69
29 30 3.070878 GGTTGCCCCTTTTCAGATTCAAA 59.929 43.478 0.00 0.00 0.00 2.69
30 31 4.263025 GGTTGCCCCTTTTCAGATTCAAAT 60.263 41.667 0.00 0.00 0.00 2.32
31 32 4.540359 TGCCCCTTTTCAGATTCAAATG 57.460 40.909 0.00 0.00 0.00 2.32
32 33 3.261390 TGCCCCTTTTCAGATTCAAATGG 59.739 43.478 0.00 0.00 0.00 3.16
33 34 3.261643 GCCCCTTTTCAGATTCAAATGGT 59.738 43.478 0.00 0.00 0.00 3.55
34 35 4.621510 GCCCCTTTTCAGATTCAAATGGTC 60.622 45.833 0.00 0.00 0.00 4.02
35 36 4.380867 CCCCTTTTCAGATTCAAATGGTCG 60.381 45.833 0.00 0.00 0.00 4.79
36 37 4.458989 CCCTTTTCAGATTCAAATGGTCGA 59.541 41.667 0.00 0.00 0.00 4.20
37 38 5.048083 CCCTTTTCAGATTCAAATGGTCGAA 60.048 40.000 0.00 0.00 0.00 3.71
38 39 6.350445 CCCTTTTCAGATTCAAATGGTCGAAT 60.350 38.462 0.00 0.00 34.58 3.34
39 40 6.749118 CCTTTTCAGATTCAAATGGTCGAATC 59.251 38.462 0.00 0.00 45.15 2.52
45 46 6.204075 GATTCAAATGGTCGAATCTACGAG 57.796 41.667 0.00 0.00 42.71 4.18
46 47 4.041740 TCAAATGGTCGAATCTACGAGG 57.958 45.455 0.00 0.00 42.88 4.63
47 48 3.697542 TCAAATGGTCGAATCTACGAGGA 59.302 43.478 0.00 0.00 42.88 3.71
48 49 3.712091 AATGGTCGAATCTACGAGGAC 57.288 47.619 0.00 0.00 42.88 3.85
49 50 2.118313 TGGTCGAATCTACGAGGACA 57.882 50.000 0.00 0.00 42.88 4.02
50 51 2.439409 TGGTCGAATCTACGAGGACAA 58.561 47.619 0.00 0.00 42.88 3.18
51 52 2.821378 TGGTCGAATCTACGAGGACAAA 59.179 45.455 0.00 0.00 42.88 2.83
52 53 3.256383 TGGTCGAATCTACGAGGACAAAA 59.744 43.478 0.00 0.00 42.88 2.44
53 54 4.240096 GGTCGAATCTACGAGGACAAAAA 58.760 43.478 0.00 0.00 42.88 1.94
72 73 5.733620 AAAAACTCTCTACCCGTATGACA 57.266 39.130 0.00 0.00 0.00 3.58
73 74 4.715527 AAACTCTCTACCCGTATGACAC 57.284 45.455 0.00 0.00 0.00 3.67
74 75 2.652590 ACTCTCTACCCGTATGACACC 58.347 52.381 0.00 0.00 0.00 4.16
75 76 1.602851 CTCTCTACCCGTATGACACCG 59.397 57.143 0.00 0.00 0.00 4.94
76 77 0.666913 CTCTACCCGTATGACACCGG 59.333 60.000 0.00 0.00 43.82 5.28
77 78 1.066918 CTACCCGTATGACACCGGC 59.933 63.158 0.00 0.00 42.87 6.13
78 79 1.669049 CTACCCGTATGACACCGGCA 61.669 60.000 0.00 0.00 42.87 5.69
79 80 1.256361 TACCCGTATGACACCGGCAA 61.256 55.000 0.00 0.00 42.87 4.52
80 81 1.376166 CCCGTATGACACCGGCAAA 60.376 57.895 0.00 0.00 42.87 3.68
81 82 0.956410 CCCGTATGACACCGGCAAAA 60.956 55.000 0.00 0.00 42.87 2.44
82 83 0.446222 CCGTATGACACCGGCAAAAG 59.554 55.000 0.00 0.00 37.43 2.27
83 84 1.434555 CGTATGACACCGGCAAAAGA 58.565 50.000 0.00 0.00 0.00 2.52
84 85 1.801771 CGTATGACACCGGCAAAAGAA 59.198 47.619 0.00 0.00 0.00 2.52
85 86 2.418628 CGTATGACACCGGCAAAAGAAT 59.581 45.455 0.00 0.00 0.00 2.40
86 87 3.619483 CGTATGACACCGGCAAAAGAATA 59.381 43.478 0.00 0.00 0.00 1.75
87 88 4.260212 CGTATGACACCGGCAAAAGAATAG 60.260 45.833 0.00 0.00 0.00 1.73
88 89 2.432444 TGACACCGGCAAAAGAATAGG 58.568 47.619 0.00 0.00 0.00 2.57
89 90 2.039216 TGACACCGGCAAAAGAATAGGA 59.961 45.455 0.00 0.00 0.00 2.94
90 91 2.678336 GACACCGGCAAAAGAATAGGAG 59.322 50.000 0.00 0.00 0.00 3.69
91 92 2.039879 ACACCGGCAAAAGAATAGGAGT 59.960 45.455 0.00 0.00 0.00 3.85
92 93 3.262405 ACACCGGCAAAAGAATAGGAGTA 59.738 43.478 0.00 0.00 0.00 2.59
93 94 4.258543 CACCGGCAAAAGAATAGGAGTAA 58.741 43.478 0.00 0.00 0.00 2.24
94 95 4.698304 CACCGGCAAAAGAATAGGAGTAAA 59.302 41.667 0.00 0.00 0.00 2.01
95 96 5.357032 CACCGGCAAAAGAATAGGAGTAAAT 59.643 40.000 0.00 0.00 0.00 1.40
96 97 5.949952 ACCGGCAAAAGAATAGGAGTAAATT 59.050 36.000 0.00 0.00 0.00 1.82
97 98 6.436218 ACCGGCAAAAGAATAGGAGTAAATTT 59.564 34.615 0.00 0.00 0.00 1.82
98 99 7.612633 ACCGGCAAAAGAATAGGAGTAAATTTA 59.387 33.333 0.00 0.00 0.00 1.40
99 100 8.630037 CCGGCAAAAGAATAGGAGTAAATTTAT 58.370 33.333 0.31 0.00 0.00 1.40
122 123 9.825109 TTATATTCACTTGAAATACGATGACCA 57.175 29.630 0.00 0.00 37.61 4.02
123 124 8.908786 ATATTCACTTGAAATACGATGACCAT 57.091 30.769 0.00 0.00 37.61 3.55
124 125 9.996554 ATATTCACTTGAAATACGATGACCATA 57.003 29.630 0.00 0.00 37.61 2.74
125 126 8.908786 ATTCACTTGAAATACGATGACCATAT 57.091 30.769 0.00 0.00 37.61 1.78
126 127 9.996554 ATTCACTTGAAATACGATGACCATATA 57.003 29.630 0.00 0.00 37.61 0.86
127 128 8.812147 TCACTTGAAATACGATGACCATATAC 57.188 34.615 0.00 0.00 0.00 1.47
128 129 7.593644 TCACTTGAAATACGATGACCATATACG 59.406 37.037 0.00 0.00 0.00 3.06
129 130 7.593644 CACTTGAAATACGATGACCATATACGA 59.406 37.037 0.00 0.00 0.00 3.43
130 131 8.304596 ACTTGAAATACGATGACCATATACGAT 58.695 33.333 0.00 0.00 0.00 3.73
131 132 8.460831 TTGAAATACGATGACCATATACGATG 57.539 34.615 0.00 0.00 0.00 3.84
132 133 7.822658 TGAAATACGATGACCATATACGATGA 58.177 34.615 0.00 0.00 0.00 2.92
133 134 7.753580 TGAAATACGATGACCATATACGATGAC 59.246 37.037 0.00 0.00 0.00 3.06
134 135 4.079665 ACGATGACCATATACGATGACG 57.920 45.455 0.00 0.00 45.75 4.35
135 136 3.749609 ACGATGACCATATACGATGACGA 59.250 43.478 0.00 0.00 42.66 4.20
136 137 4.214758 ACGATGACCATATACGATGACGAA 59.785 41.667 0.00 0.00 42.66 3.85
137 138 4.788609 CGATGACCATATACGATGACGAAG 59.211 45.833 0.00 0.00 42.66 3.79
138 139 5.390567 CGATGACCATATACGATGACGAAGA 60.391 44.000 0.00 0.00 42.66 2.87
139 140 5.761165 TGACCATATACGATGACGAAGAA 57.239 39.130 0.00 0.00 42.66 2.52
140 141 5.516996 TGACCATATACGATGACGAAGAAC 58.483 41.667 0.00 0.00 42.66 3.01
141 142 5.066764 TGACCATATACGATGACGAAGAACA 59.933 40.000 0.00 0.00 42.66 3.18
142 143 6.085555 ACCATATACGATGACGAAGAACAT 57.914 37.500 0.00 0.00 42.66 2.71
143 144 7.040961 TGACCATATACGATGACGAAGAACATA 60.041 37.037 0.00 0.00 42.66 2.29
144 145 7.306213 ACCATATACGATGACGAAGAACATAG 58.694 38.462 0.00 0.00 42.66 2.23
145 146 6.747739 CCATATACGATGACGAAGAACATAGG 59.252 42.308 0.00 0.00 42.66 2.57
146 147 2.810650 ACGATGACGAAGAACATAGGC 58.189 47.619 0.00 0.00 42.66 3.93
147 148 2.128035 CGATGACGAAGAACATAGGCC 58.872 52.381 0.00 0.00 42.66 5.19
148 149 2.223829 CGATGACGAAGAACATAGGCCT 60.224 50.000 11.78 11.78 42.66 5.19
149 150 3.738281 CGATGACGAAGAACATAGGCCTT 60.738 47.826 12.58 0.00 42.66 4.35
150 151 3.695830 TGACGAAGAACATAGGCCTTT 57.304 42.857 12.58 0.00 0.00 3.11
151 152 4.015872 TGACGAAGAACATAGGCCTTTT 57.984 40.909 12.58 1.21 0.00 2.27
152 153 5.155278 TGACGAAGAACATAGGCCTTTTA 57.845 39.130 12.58 0.00 0.00 1.52
153 154 5.553123 TGACGAAGAACATAGGCCTTTTAA 58.447 37.500 12.58 0.00 0.00 1.52
154 155 5.998981 TGACGAAGAACATAGGCCTTTTAAA 59.001 36.000 12.58 0.00 0.00 1.52
155 156 6.487331 TGACGAAGAACATAGGCCTTTTAAAA 59.513 34.615 12.58 0.00 0.00 1.52
156 157 7.013464 TGACGAAGAACATAGGCCTTTTAAAAA 59.987 33.333 12.58 0.00 0.00 1.94
157 158 7.892609 ACGAAGAACATAGGCCTTTTAAAAAT 58.107 30.769 12.58 0.00 0.00 1.82
158 159 9.016438 ACGAAGAACATAGGCCTTTTAAAAATA 57.984 29.630 12.58 0.00 0.00 1.40
165 166 9.884636 ACATAGGCCTTTTAAAAATATGAAACC 57.115 29.630 12.58 7.55 0.00 3.27
166 167 9.325198 CATAGGCCTTTTAAAAATATGAAACCC 57.675 33.333 12.58 0.00 0.00 4.11
167 168 7.568128 AGGCCTTTTAAAAATATGAAACCCT 57.432 32.000 0.00 0.00 0.00 4.34
168 169 7.620880 AGGCCTTTTAAAAATATGAAACCCTC 58.379 34.615 0.00 0.00 0.00 4.30
169 170 6.533723 GGCCTTTTAAAAATATGAAACCCTCG 59.466 38.462 1.66 0.00 0.00 4.63
170 171 6.533723 GCCTTTTAAAAATATGAAACCCTCGG 59.466 38.462 1.66 0.00 0.00 4.63
171 172 7.577998 GCCTTTTAAAAATATGAAACCCTCGGA 60.578 37.037 1.66 0.00 0.00 4.55
172 173 8.308207 CCTTTTAAAAATATGAAACCCTCGGAA 58.692 33.333 1.66 0.00 0.00 4.30
173 174 9.353999 CTTTTAAAAATATGAAACCCTCGGAAG 57.646 33.333 1.66 0.00 0.00 3.46
174 175 4.983671 AAAATATGAAACCCTCGGAAGC 57.016 40.909 0.00 0.00 0.00 3.86
175 176 3.644966 AATATGAAACCCTCGGAAGCA 57.355 42.857 0.00 0.00 0.00 3.91
176 177 2.396590 TATGAAACCCTCGGAAGCAC 57.603 50.000 0.00 0.00 0.00 4.40
186 187 2.100631 CGGAAGCACGCCTAACCTG 61.101 63.158 0.00 0.00 0.00 4.00
190 191 0.037232 AAGCACGCCTAACCTGAGAC 60.037 55.000 0.00 0.00 0.00 3.36
214 216 5.783654 CGAAATATGAACATTCGTAATCGGC 59.216 40.000 16.74 0.00 40.62 5.54
216 218 3.944422 ATGAACATTCGTAATCGGCAC 57.056 42.857 0.00 0.00 37.69 5.01
217 219 2.689646 TGAACATTCGTAATCGGCACA 58.310 42.857 0.00 0.00 37.69 4.57
218 220 3.067833 TGAACATTCGTAATCGGCACAA 58.932 40.909 0.00 0.00 37.69 3.33
219 221 3.124466 TGAACATTCGTAATCGGCACAAG 59.876 43.478 0.00 0.00 37.69 3.16
220 222 1.396996 ACATTCGTAATCGGCACAAGC 59.603 47.619 0.00 0.00 41.10 4.01
221 223 1.396648 CATTCGTAATCGGCACAAGCA 59.603 47.619 0.00 0.00 44.61 3.91
222 224 0.793861 TTCGTAATCGGCACAAGCAC 59.206 50.000 0.00 0.00 44.61 4.40
283 285 1.202463 CGTTCTGAAGGCCGATGAGAT 60.202 52.381 0.00 0.00 0.00 2.75
292 294 2.037620 GCCGATGAGATGAGCCCAGT 62.038 60.000 0.00 0.00 0.00 4.00
333 335 0.445436 GATGATGAATGGATCGCCGC 59.555 55.000 0.00 0.00 36.79 6.53
334 336 0.957395 ATGATGAATGGATCGCCGCC 60.957 55.000 0.00 0.00 36.79 6.13
335 337 2.666190 ATGAATGGATCGCCGCCG 60.666 61.111 0.00 0.00 36.79 6.46
540 542 2.124570 CCCATCCCTGCCGAAGTG 60.125 66.667 0.00 0.00 0.00 3.16
666 675 4.715523 CCCTCGCGCTTTTCCCCA 62.716 66.667 5.56 0.00 0.00 4.96
667 676 3.431725 CCTCGCGCTTTTCCCCAC 61.432 66.667 5.56 0.00 0.00 4.61
668 677 3.431725 CTCGCGCTTTTCCCCACC 61.432 66.667 5.56 0.00 0.00 4.61
672 681 2.746277 CGCTTTTCCCCACCGGAG 60.746 66.667 9.46 0.00 43.39 4.63
734 762 1.492319 CGAAACGCGACCTTCCAACA 61.492 55.000 15.93 0.00 44.57 3.33
943 971 1.587034 GCGAAGAGGTTAACGAATCCG 59.413 52.381 0.00 2.17 42.50 4.18
995 1023 2.278857 CACCGCTCGGGATTCTCG 60.279 66.667 13.31 0.00 39.97 4.04
1024 1052 3.665675 ATCGGTGTCGCAGGCTTCC 62.666 63.158 0.00 0.00 36.13 3.46
1052 1080 0.749649 ATCGGCCAGCTCTTGAGTAG 59.250 55.000 2.24 0.00 0.00 2.57
2338 2370 3.263425 GGTGGTGTAATCTCTTCCTTGGA 59.737 47.826 0.00 0.00 0.00 3.53
2636 2671 2.696707 TGGAACGACCACAACTTCTACT 59.303 45.455 0.00 0.00 44.64 2.57
2637 2672 3.057734 GGAACGACCACAACTTCTACTG 58.942 50.000 0.00 0.00 38.79 2.74
2638 2673 3.492137 GGAACGACCACAACTTCTACTGT 60.492 47.826 0.00 0.00 38.79 3.55
2639 2674 3.814005 ACGACCACAACTTCTACTGTT 57.186 42.857 0.00 0.00 0.00 3.16
2640 2675 3.714391 ACGACCACAACTTCTACTGTTC 58.286 45.455 0.00 0.00 0.00 3.18
2641 2676 3.383825 ACGACCACAACTTCTACTGTTCT 59.616 43.478 0.00 0.00 0.00 3.01
2642 2677 4.581824 ACGACCACAACTTCTACTGTTCTA 59.418 41.667 0.00 0.00 0.00 2.10
2643 2678 4.916249 CGACCACAACTTCTACTGTTCTAC 59.084 45.833 0.00 0.00 0.00 2.59
2715 2754 3.058016 CGTCCATTTTTCACAGTGATGCT 60.058 43.478 3.45 0.00 0.00 3.79
2893 2932 9.813446 AAGCTGGAAATATCAAGATTTTCATTC 57.187 29.630 14.04 0.00 31.03 2.67
3146 3185 3.053693 TGTTAATTGGATGGAGGAGGGTG 60.054 47.826 0.00 0.00 0.00 4.61
3192 3231 9.528489 TCTACCTATTTTAAATTTGAGGCTGTT 57.472 29.630 0.00 0.00 0.00 3.16
3203 3242 0.946221 GAGGCTGTTATCGGCGGATG 60.946 60.000 16.41 1.35 46.03 3.51
3242 3281 7.332003 TGTTTTTCATTTGCAACTATTAGCG 57.668 32.000 0.00 0.00 0.00 4.26
3351 3475 9.941664 CTTTTATAGTGTATGAATTGGCTTCTG 57.058 33.333 0.00 0.00 34.75 3.02
3411 3535 6.072452 TGCTTATCGTCAGTATCTATCTGTGG 60.072 42.308 0.00 0.00 34.86 4.17
3413 3537 5.950758 ATCGTCAGTATCTATCTGTGGTC 57.049 43.478 0.00 0.00 34.86 4.02
3427 3551 1.143889 TGTGGTCAGGCACATAACCAA 59.856 47.619 0.00 0.00 43.09 3.67
3517 3642 3.011708 AGGTCCAGGATTATTTGTGGCTT 59.988 43.478 0.00 0.00 0.00 4.35
3541 3666 1.622811 CTCTCCAGGAGCAACTGTCTT 59.377 52.381 12.26 0.00 36.75 3.01
3582 3707 9.520204 TGATTTGATTTCTTCTTTGTGAGAAAC 57.480 29.630 1.11 0.00 43.56 2.78
3616 3741 6.920569 ACTCGACGCTTAATCCAATATTTT 57.079 33.333 0.00 0.00 0.00 1.82
4437 4686 1.827969 CAAGAGGAGACGGGAATCAGT 59.172 52.381 0.00 0.00 0.00 3.41
4630 4913 1.100510 CCTACAGCTACGCCACTGTA 58.899 55.000 10.47 10.47 45.09 2.74
4631 4914 1.681793 CCTACAGCTACGCCACTGTAT 59.318 52.381 11.13 0.00 45.63 2.29
4632 4915 2.543861 CCTACAGCTACGCCACTGTATG 60.544 54.545 11.13 6.41 45.63 2.39
4633 4916 0.895530 ACAGCTACGCCACTGTATGT 59.104 50.000 3.25 0.00 45.09 2.29
4634 4917 1.280982 CAGCTACGCCACTGTATGTG 58.719 55.000 0.00 0.00 45.80 3.21
4635 4918 0.460284 AGCTACGCCACTGTATGTGC 60.460 55.000 0.00 0.00 44.92 4.57
4636 4919 0.739462 GCTACGCCACTGTATGTGCA 60.739 55.000 0.00 0.00 44.92 4.57
4696 4979 7.255070 CCCTGGTGTTTCCAAAATATTGTTTTG 60.255 37.037 10.64 10.64 46.59 2.44
4913 5196 5.978814 TGACTATAGTTCTCTTTTGCCCTC 58.021 41.667 6.88 0.00 0.00 4.30
4914 5197 5.104900 TGACTATAGTTCTCTTTTGCCCTCC 60.105 44.000 6.88 0.00 0.00 4.30
4915 5198 5.033522 ACTATAGTTCTCTTTTGCCCTCCT 58.966 41.667 0.00 0.00 0.00 3.69
4916 5199 4.936685 ATAGTTCTCTTTTGCCCTCCTT 57.063 40.909 0.00 0.00 0.00 3.36
4917 5200 3.602205 AGTTCTCTTTTGCCCTCCTTT 57.398 42.857 0.00 0.00 0.00 3.11
4918 5201 3.916035 AGTTCTCTTTTGCCCTCCTTTT 58.084 40.909 0.00 0.00 0.00 2.27
4919 5202 3.638627 AGTTCTCTTTTGCCCTCCTTTTG 59.361 43.478 0.00 0.00 0.00 2.44
4920 5203 3.312736 TCTCTTTTGCCCTCCTTTTGT 57.687 42.857 0.00 0.00 0.00 2.83
4921 5204 4.447138 TCTCTTTTGCCCTCCTTTTGTA 57.553 40.909 0.00 0.00 0.00 2.41
4922 5205 4.798882 TCTCTTTTGCCCTCCTTTTGTAA 58.201 39.130 0.00 0.00 0.00 2.41
4923 5206 5.205056 TCTCTTTTGCCCTCCTTTTGTAAA 58.795 37.500 0.00 0.00 0.00 2.01
4924 5207 5.659079 TCTCTTTTGCCCTCCTTTTGTAAAA 59.341 36.000 0.00 0.00 0.00 1.52
4925 5208 6.155393 TCTCTTTTGCCCTCCTTTTGTAAAAA 59.845 34.615 0.00 0.00 0.00 1.94
4982 5279 8.999431 TGTTTTCTCTAAGTAGCTTTATTGTGG 58.001 33.333 0.00 0.00 0.00 4.17
5182 5480 0.824109 TAGTGGTCGAAGGCATCCTG 59.176 55.000 0.00 0.00 32.13 3.86
5269 5567 0.984230 GTGGGAAGATGACAGGGTCA 59.016 55.000 1.05 1.05 46.90 4.02
5443 5741 0.883153 TGCATGTGCCTGTGTTCATC 59.117 50.000 2.07 0.00 41.18 2.92
5498 5796 3.760151 TGTTTTTGATGGGCATGAGAGAG 59.240 43.478 0.00 0.00 0.00 3.20
5499 5797 4.012374 GTTTTTGATGGGCATGAGAGAGA 58.988 43.478 0.00 0.00 0.00 3.10
5501 5799 2.996249 TGATGGGCATGAGAGAGAAC 57.004 50.000 0.00 0.00 0.00 3.01
5502 5800 2.190538 TGATGGGCATGAGAGAGAACA 58.809 47.619 0.00 0.00 0.00 3.18
5505 5803 0.809241 GGGCATGAGAGAGAACAGCG 60.809 60.000 0.00 0.00 0.00 5.18
5506 5804 1.427592 GGCATGAGAGAGAACAGCGC 61.428 60.000 0.00 0.00 0.00 5.92
5507 5805 1.427592 GCATGAGAGAGAACAGCGCC 61.428 60.000 2.29 0.00 0.00 6.53
5559 5862 7.390823 TGTGTATACTCTTGCTAAATCACCAA 58.609 34.615 4.17 0.00 0.00 3.67
5560 5863 7.549134 TGTGTATACTCTTGCTAAATCACCAAG 59.451 37.037 4.17 0.00 37.80 3.61
5561 5864 6.538742 TGTATACTCTTGCTAAATCACCAAGC 59.461 38.462 4.17 0.00 36.72 4.01
5562 5865 3.754965 ACTCTTGCTAAATCACCAAGCA 58.245 40.909 0.00 0.00 44.15 3.91
5630 5939 1.008194 CATGCATGCATGTACCGGC 60.008 57.895 40.30 12.66 46.20 6.13
5705 6015 5.281693 TCAGAGTGTTGCATAATGTTTCG 57.718 39.130 0.00 0.00 0.00 3.46
5731 6041 9.811995 GGTAGTTTTATTTTCTTGTTCCAAAGT 57.188 29.630 0.00 0.00 0.00 2.66
5796 6113 3.862267 CGAGAGAGCAAGTAAGTTGGATG 59.138 47.826 0.00 0.00 36.56 3.51
5802 6119 2.554032 GCAAGTAAGTTGGATGCACACT 59.446 45.455 0.00 0.00 36.56 3.55
5803 6120 3.004734 GCAAGTAAGTTGGATGCACACTT 59.995 43.478 15.21 15.21 36.56 3.16
5810 6127 5.483685 AGTTGGATGCACACTTACTTAGA 57.516 39.130 0.00 0.00 0.00 2.10
5815 6132 6.472016 TGGATGCACACTTACTTAGATTTCA 58.528 36.000 0.00 0.00 0.00 2.69
5831 6148 8.902540 TTAGATTTCAGTTGAGCTTTCTGTTA 57.097 30.769 11.50 4.45 0.00 2.41
5841 6158 6.683974 TGAGCTTTCTGTTAGAAATATGCC 57.316 37.500 4.64 1.94 42.66 4.40
5848 6165 7.914427 TTCTGTTAGAAATATGCCCTAGAGA 57.086 36.000 0.00 0.00 29.99 3.10
5971 6288 5.193099 ACATAAGCAAATACCAAGTCCCT 57.807 39.130 0.00 0.00 0.00 4.20
5973 6290 6.911308 ACATAAGCAAATACCAAGTCCCTAT 58.089 36.000 0.00 0.00 0.00 2.57
5974 6291 6.772716 ACATAAGCAAATACCAAGTCCCTATG 59.227 38.462 0.00 0.00 0.00 2.23
5981 6298 2.279173 ACCAAGTCCCTATGAAGCCTT 58.721 47.619 0.00 0.00 0.00 4.35
5987 6304 6.183361 CCAAGTCCCTATGAAGCCTTTACTAT 60.183 42.308 0.00 0.00 0.00 2.12
5995 6312 8.463607 CCTATGAAGCCTTTACTATACTAGCTC 58.536 40.741 0.00 0.00 0.00 4.09
6010 6327 9.469807 CTATACTAGCTCGTTGATCAAAAGATT 57.530 33.333 18.65 11.42 0.00 2.40
6021 6338 8.690840 CGTTGATCAAAAGATTGTTAAGGTTTC 58.309 33.333 10.35 0.00 37.79 2.78
6098 6415 9.585099 GAATGATGTGATAGATAAGACTCATCC 57.415 37.037 0.00 0.00 34.50 3.51
6109 6426 6.773685 AGATAAGACTCATCCGTTAGCTTAGT 59.226 38.462 0.00 0.00 0.00 2.24
6117 6434 8.679100 ACTCATCCGTTAGCTTAGTATATGATC 58.321 37.037 0.00 0.00 0.00 2.92
6121 6438 7.879070 TCCGTTAGCTTAGTATATGATCGTTT 58.121 34.615 0.00 0.00 0.00 3.60
6141 6458 7.867752 TCGTTTAGTTTATTGCTACTGCTTTT 58.132 30.769 0.00 0.00 40.48 2.27
6197 6515 1.934589 TCATGCAACTTCGGGTATCG 58.065 50.000 0.00 0.00 40.90 2.92
6220 6538 5.509670 CGGAGGAATATCTTGTGTGCTATCA 60.510 44.000 0.00 0.00 0.00 2.15
6231 6549 3.874543 TGTGTGCTATCAAACGTCACTTT 59.125 39.130 0.00 0.00 33.01 2.66
6232 6550 4.211389 GTGTGCTATCAAACGTCACTTTG 58.789 43.478 0.00 0.00 33.14 2.77
6239 6557 6.292703 GCTATCAAACGTCACTTTGTAACTGT 60.293 38.462 0.00 0.00 33.54 3.55
6244 6562 4.247258 ACGTCACTTTGTAACTGTGTGAA 58.753 39.130 0.00 0.00 39.01 3.18
6245 6563 4.873827 ACGTCACTTTGTAACTGTGTGAAT 59.126 37.500 0.00 0.00 39.01 2.57
6257 6575 7.663905 TGTAACTGTGTGAATATAAAGGTGCTT 59.336 33.333 0.00 0.00 0.00 3.91
6271 6589 5.037598 AAAGGTGCTTTATAGGTACTCCCT 58.962 41.667 0.00 0.00 38.44 4.20
6272 6590 4.224762 AGGTGCTTTATAGGTACTCCCTC 58.775 47.826 0.00 0.00 44.81 4.30
6273 6591 3.324268 GGTGCTTTATAGGTACTCCCTCC 59.676 52.174 0.00 0.00 44.81 4.30
6274 6592 3.005578 GTGCTTTATAGGTACTCCCTCCG 59.994 52.174 0.00 0.00 44.81 4.63
6275 6593 3.229293 GCTTTATAGGTACTCCCTCCGT 58.771 50.000 0.00 0.00 44.81 4.69
6276 6594 3.640498 GCTTTATAGGTACTCCCTCCGTT 59.360 47.826 0.00 0.00 44.81 4.44
6277 6595 4.261952 GCTTTATAGGTACTCCCTCCGTTC 60.262 50.000 0.00 0.00 44.81 3.95
6278 6596 1.978454 ATAGGTACTCCCTCCGTTCG 58.022 55.000 0.00 0.00 44.81 3.95
6279 6597 0.107017 TAGGTACTCCCTCCGTTCGG 60.107 60.000 4.74 4.74 44.81 4.30
6280 6598 1.379044 GGTACTCCCTCCGTTCGGA 60.379 63.158 13.34 13.34 0.00 4.55
6281 6599 0.967380 GGTACTCCCTCCGTTCGGAA 60.967 60.000 14.79 0.04 33.41 4.30
6282 6600 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
6283 6601 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
6284 6602 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
6285 6603 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
6286 6604 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
6287 6605 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
6288 6606 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
6289 6607 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
6290 6608 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
6291 6609 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
6292 6610 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
6293 6611 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
6294 6612 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
6295 6613 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
6296 6614 4.561606 CGTTCGGAATTACTTGTCTCGAAT 59.438 41.667 0.00 0.00 37.46 3.34
6297 6615 5.740569 CGTTCGGAATTACTTGTCTCGAATA 59.259 40.000 0.00 0.00 37.46 1.75
6298 6616 6.417044 CGTTCGGAATTACTTGTCTCGAATAT 59.583 38.462 0.00 0.00 37.46 1.28
6299 6617 7.556433 GTTCGGAATTACTTGTCTCGAATATG 58.444 38.462 0.00 0.00 37.46 1.78
6300 6618 7.034685 TCGGAATTACTTGTCTCGAATATGA 57.965 36.000 0.00 0.00 0.00 2.15
6301 6619 7.485810 TCGGAATTACTTGTCTCGAATATGAA 58.514 34.615 0.00 0.00 0.00 2.57
6302 6620 8.141909 TCGGAATTACTTGTCTCGAATATGAAT 58.858 33.333 0.00 0.00 0.00 2.57
6303 6621 8.217115 CGGAATTACTTGTCTCGAATATGAATG 58.783 37.037 0.00 0.00 0.00 2.67
6304 6622 9.046296 GGAATTACTTGTCTCGAATATGAATGT 57.954 33.333 0.00 0.00 0.00 2.71
6343 6661 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
6344 6662 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
6345 6663 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
6346 6664 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
6347 6665 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.335400 TTTGAATCTGAAAAGGGGCAAC 57.665 40.909 0.00 0.00 0.00 4.17
9 10 4.262981 CCATTTGAATCTGAAAAGGGGCAA 60.263 41.667 0.00 0.00 34.40 4.52
10 11 3.261390 CCATTTGAATCTGAAAAGGGGCA 59.739 43.478 0.00 0.00 34.40 5.36
11 12 3.261643 ACCATTTGAATCTGAAAAGGGGC 59.738 43.478 8.37 0.00 40.62 5.80
12 13 4.380867 CGACCATTTGAATCTGAAAAGGGG 60.381 45.833 8.37 2.24 40.62 4.79
13 14 4.458989 TCGACCATTTGAATCTGAAAAGGG 59.541 41.667 3.24 3.24 41.74 3.95
14 15 5.627499 TCGACCATTTGAATCTGAAAAGG 57.373 39.130 0.00 0.00 0.00 3.11
15 16 7.731556 GATTCGACCATTTGAATCTGAAAAG 57.268 36.000 7.50 0.00 44.64 2.27
22 23 5.175856 CCTCGTAGATTCGACCATTTGAATC 59.824 44.000 6.80 6.80 46.96 2.52
23 24 5.050490 CCTCGTAGATTCGACCATTTGAAT 58.950 41.667 0.00 0.00 38.40 2.57
24 25 4.158949 TCCTCGTAGATTCGACCATTTGAA 59.841 41.667 0.00 0.00 35.91 2.69
25 26 3.697542 TCCTCGTAGATTCGACCATTTGA 59.302 43.478 0.00 0.00 35.91 2.69
26 27 3.797256 GTCCTCGTAGATTCGACCATTTG 59.203 47.826 0.00 0.00 35.91 2.32
27 28 3.446161 TGTCCTCGTAGATTCGACCATTT 59.554 43.478 0.00 0.00 35.91 2.32
28 29 3.021695 TGTCCTCGTAGATTCGACCATT 58.978 45.455 0.00 0.00 35.91 3.16
29 30 2.651455 TGTCCTCGTAGATTCGACCAT 58.349 47.619 0.00 0.00 35.91 3.55
30 31 2.118313 TGTCCTCGTAGATTCGACCA 57.882 50.000 0.00 0.00 35.91 4.02
31 32 3.498927 TTTGTCCTCGTAGATTCGACC 57.501 47.619 0.00 0.00 35.91 4.79
50 51 5.476614 GTGTCATACGGGTAGAGAGTTTTT 58.523 41.667 0.00 0.00 0.00 1.94
51 52 4.081807 GGTGTCATACGGGTAGAGAGTTTT 60.082 45.833 0.00 0.00 0.00 2.43
52 53 3.446516 GGTGTCATACGGGTAGAGAGTTT 59.553 47.826 0.00 0.00 0.00 2.66
53 54 3.022406 GGTGTCATACGGGTAGAGAGTT 58.978 50.000 0.00 0.00 0.00 3.01
54 55 2.652590 GGTGTCATACGGGTAGAGAGT 58.347 52.381 0.00 0.00 0.00 3.24
55 56 1.602851 CGGTGTCATACGGGTAGAGAG 59.397 57.143 0.00 0.00 0.00 3.20
56 57 1.671979 CGGTGTCATACGGGTAGAGA 58.328 55.000 0.00 0.00 0.00 3.10
57 58 0.666913 CCGGTGTCATACGGGTAGAG 59.333 60.000 10.20 0.00 46.08 2.43
58 59 2.797837 CCGGTGTCATACGGGTAGA 58.202 57.895 10.20 0.00 46.08 2.59
64 65 1.434555 TCTTTTGCCGGTGTCATACG 58.565 50.000 1.90 0.00 0.00 3.06
65 66 4.035208 CCTATTCTTTTGCCGGTGTCATAC 59.965 45.833 1.90 0.00 0.00 2.39
66 67 4.080807 TCCTATTCTTTTGCCGGTGTCATA 60.081 41.667 1.90 0.00 0.00 2.15
67 68 3.016736 CCTATTCTTTTGCCGGTGTCAT 58.983 45.455 1.90 0.00 0.00 3.06
68 69 2.039216 TCCTATTCTTTTGCCGGTGTCA 59.961 45.455 1.90 0.00 0.00 3.58
69 70 2.678336 CTCCTATTCTTTTGCCGGTGTC 59.322 50.000 1.90 0.00 0.00 3.67
70 71 2.039879 ACTCCTATTCTTTTGCCGGTGT 59.960 45.455 1.90 0.00 0.00 4.16
71 72 2.711542 ACTCCTATTCTTTTGCCGGTG 58.288 47.619 1.90 0.00 0.00 4.94
72 73 4.563140 TTACTCCTATTCTTTTGCCGGT 57.437 40.909 1.90 0.00 0.00 5.28
73 74 6.451064 AATTTACTCCTATTCTTTTGCCGG 57.549 37.500 0.00 0.00 0.00 6.13
96 97 9.825109 TGGTCATCGTATTTCAAGTGAATATAA 57.175 29.630 0.00 0.00 33.54 0.98
97 98 9.996554 ATGGTCATCGTATTTCAAGTGAATATA 57.003 29.630 0.00 0.00 33.54 0.86
98 99 8.908786 ATGGTCATCGTATTTCAAGTGAATAT 57.091 30.769 0.00 0.00 33.54 1.28
99 100 9.996554 ATATGGTCATCGTATTTCAAGTGAATA 57.003 29.630 0.00 0.00 33.54 1.75
100 101 8.908786 ATATGGTCATCGTATTTCAAGTGAAT 57.091 30.769 0.00 0.00 33.54 2.57
101 102 9.256477 GTATATGGTCATCGTATTTCAAGTGAA 57.744 33.333 0.00 0.00 0.00 3.18
102 103 7.593644 CGTATATGGTCATCGTATTTCAAGTGA 59.406 37.037 0.00 0.00 0.00 3.41
103 104 7.593644 TCGTATATGGTCATCGTATTTCAAGTG 59.406 37.037 0.00 0.00 0.00 3.16
104 105 7.654568 TCGTATATGGTCATCGTATTTCAAGT 58.345 34.615 0.00 0.00 0.00 3.16
105 106 8.587111 CATCGTATATGGTCATCGTATTTCAAG 58.413 37.037 0.00 0.00 0.00 3.02
106 107 8.301002 TCATCGTATATGGTCATCGTATTTCAA 58.699 33.333 0.00 0.00 0.00 2.69
107 108 7.753580 GTCATCGTATATGGTCATCGTATTTCA 59.246 37.037 0.00 0.00 0.00 2.69
108 109 7.044901 CGTCATCGTATATGGTCATCGTATTTC 60.045 40.741 0.00 0.00 0.00 2.17
109 110 6.745907 CGTCATCGTATATGGTCATCGTATTT 59.254 38.462 0.00 0.00 0.00 1.40
110 111 6.093082 TCGTCATCGTATATGGTCATCGTATT 59.907 38.462 0.00 0.00 38.33 1.89
111 112 5.583457 TCGTCATCGTATATGGTCATCGTAT 59.417 40.000 0.00 0.00 38.33 3.06
112 113 4.931002 TCGTCATCGTATATGGTCATCGTA 59.069 41.667 0.00 0.00 38.33 3.43
113 114 3.749609 TCGTCATCGTATATGGTCATCGT 59.250 43.478 0.00 0.00 38.33 3.73
114 115 4.336532 TCGTCATCGTATATGGTCATCG 57.663 45.455 0.00 0.00 38.33 3.84
115 116 5.939457 TCTTCGTCATCGTATATGGTCATC 58.061 41.667 0.00 0.00 38.33 2.92
116 117 5.959618 TCTTCGTCATCGTATATGGTCAT 57.040 39.130 0.00 0.00 38.33 3.06
117 118 5.066764 TGTTCTTCGTCATCGTATATGGTCA 59.933 40.000 0.00 0.00 38.33 4.02
118 119 5.516996 TGTTCTTCGTCATCGTATATGGTC 58.483 41.667 0.00 0.00 38.33 4.02
119 120 5.509716 TGTTCTTCGTCATCGTATATGGT 57.490 39.130 0.00 0.00 38.33 3.55
120 121 6.747739 CCTATGTTCTTCGTCATCGTATATGG 59.252 42.308 0.00 0.00 38.33 2.74
121 122 6.251589 GCCTATGTTCTTCGTCATCGTATATG 59.748 42.308 0.00 0.00 38.33 1.78
122 123 6.323266 GCCTATGTTCTTCGTCATCGTATAT 58.677 40.000 0.00 0.00 38.33 0.86
123 124 5.335426 GGCCTATGTTCTTCGTCATCGTATA 60.335 44.000 0.00 0.00 38.33 1.47
124 125 4.547532 GCCTATGTTCTTCGTCATCGTAT 58.452 43.478 0.00 0.00 38.33 3.06
125 126 3.243301 GGCCTATGTTCTTCGTCATCGTA 60.243 47.826 0.00 0.00 38.33 3.43
126 127 2.481449 GGCCTATGTTCTTCGTCATCGT 60.481 50.000 0.00 0.00 38.33 3.73
127 128 2.128035 GGCCTATGTTCTTCGTCATCG 58.872 52.381 0.00 0.00 38.55 3.84
128 129 3.460857 AGGCCTATGTTCTTCGTCATC 57.539 47.619 1.29 0.00 0.00 2.92
129 130 3.914426 AAGGCCTATGTTCTTCGTCAT 57.086 42.857 5.16 0.00 0.00 3.06
130 131 3.695830 AAAGGCCTATGTTCTTCGTCA 57.304 42.857 5.16 0.00 0.00 4.35
131 132 6.490566 TTTAAAAGGCCTATGTTCTTCGTC 57.509 37.500 5.16 0.00 0.00 4.20
132 133 6.887626 TTTTAAAAGGCCTATGTTCTTCGT 57.112 33.333 5.16 0.00 0.00 3.85
139 140 9.884636 GGTTTCATATTTTTAAAAGGCCTATGT 57.115 29.630 5.16 0.00 0.00 2.29
140 141 9.325198 GGGTTTCATATTTTTAAAAGGCCTATG 57.675 33.333 5.16 2.31 0.00 2.23
141 142 9.279233 AGGGTTTCATATTTTTAAAAGGCCTAT 57.721 29.630 5.16 0.00 0.00 2.57
142 143 8.673456 AGGGTTTCATATTTTTAAAAGGCCTA 57.327 30.769 5.16 0.00 0.00 3.93
143 144 7.568128 AGGGTTTCATATTTTTAAAAGGCCT 57.432 32.000 0.00 0.00 0.00 5.19
144 145 6.533723 CGAGGGTTTCATATTTTTAAAAGGCC 59.466 38.462 0.00 0.00 0.00 5.19
145 146 6.533723 CCGAGGGTTTCATATTTTTAAAAGGC 59.466 38.462 0.14 0.00 0.00 4.35
146 147 7.832769 TCCGAGGGTTTCATATTTTTAAAAGG 58.167 34.615 0.14 0.00 0.00 3.11
147 148 9.353999 CTTCCGAGGGTTTCATATTTTTAAAAG 57.646 33.333 0.14 0.00 0.00 2.27
148 149 7.815549 GCTTCCGAGGGTTTCATATTTTTAAAA 59.184 33.333 0.00 0.00 0.00 1.52
149 150 7.039644 TGCTTCCGAGGGTTTCATATTTTTAAA 60.040 33.333 0.00 0.00 0.00 1.52
150 151 6.434652 TGCTTCCGAGGGTTTCATATTTTTAA 59.565 34.615 0.00 0.00 0.00 1.52
151 152 5.946972 TGCTTCCGAGGGTTTCATATTTTTA 59.053 36.000 0.00 0.00 0.00 1.52
152 153 4.770010 TGCTTCCGAGGGTTTCATATTTTT 59.230 37.500 0.00 0.00 0.00 1.94
153 154 4.157840 GTGCTTCCGAGGGTTTCATATTTT 59.842 41.667 0.00 0.00 0.00 1.82
154 155 3.694566 GTGCTTCCGAGGGTTTCATATTT 59.305 43.478 0.00 0.00 0.00 1.40
155 156 3.279434 GTGCTTCCGAGGGTTTCATATT 58.721 45.455 0.00 0.00 0.00 1.28
156 157 2.741878 CGTGCTTCCGAGGGTTTCATAT 60.742 50.000 0.00 0.00 0.00 1.78
157 158 1.404986 CGTGCTTCCGAGGGTTTCATA 60.405 52.381 0.00 0.00 0.00 2.15
158 159 0.673644 CGTGCTTCCGAGGGTTTCAT 60.674 55.000 0.00 0.00 0.00 2.57
159 160 1.301401 CGTGCTTCCGAGGGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
160 161 2.677979 GCGTGCTTCCGAGGGTTTC 61.678 63.158 0.00 0.00 0.00 2.78
161 162 2.668550 GCGTGCTTCCGAGGGTTT 60.669 61.111 0.00 0.00 0.00 3.27
162 163 4.699522 GGCGTGCTTCCGAGGGTT 62.700 66.667 0.00 0.00 0.00 4.11
164 165 3.014085 TTAGGCGTGCTTCCGAGGG 62.014 63.158 0.00 0.00 0.00 4.30
165 166 1.810030 GTTAGGCGTGCTTCCGAGG 60.810 63.158 0.00 0.00 0.00 4.63
166 167 1.810030 GGTTAGGCGTGCTTCCGAG 60.810 63.158 0.00 0.00 0.00 4.63
167 168 2.263540 GGTTAGGCGTGCTTCCGA 59.736 61.111 0.00 0.00 0.00 4.55
168 169 2.100631 CAGGTTAGGCGTGCTTCCG 61.101 63.158 0.00 0.00 0.00 4.30
169 170 0.741221 CTCAGGTTAGGCGTGCTTCC 60.741 60.000 0.00 0.00 33.35 3.46
170 171 0.246635 TCTCAGGTTAGGCGTGCTTC 59.753 55.000 0.00 0.00 33.35 3.86
171 172 0.037232 GTCTCAGGTTAGGCGTGCTT 60.037 55.000 0.00 0.00 33.35 3.91
172 173 1.592223 GTCTCAGGTTAGGCGTGCT 59.408 57.895 0.00 0.00 33.35 4.40
173 174 1.805945 CGTCTCAGGTTAGGCGTGC 60.806 63.158 0.00 0.00 39.69 5.34
174 175 0.242825 TTCGTCTCAGGTTAGGCGTG 59.757 55.000 0.00 0.00 44.73 5.34
175 176 0.963962 TTTCGTCTCAGGTTAGGCGT 59.036 50.000 0.00 0.00 44.73 5.68
176 177 2.295253 ATTTCGTCTCAGGTTAGGCG 57.705 50.000 0.00 0.00 45.78 5.52
186 187 7.939910 CGATTACGAATGTTCATATTTCGTCTC 59.060 37.037 13.75 11.38 42.66 3.36
190 191 5.783654 GCCGATTACGAATGTTCATATTTCG 59.216 40.000 5.21 5.21 42.66 3.46
213 215 2.969443 ACGAGTTATTGTGCTTGTGC 57.031 45.000 0.00 0.00 40.20 4.57
214 216 6.128553 ACAGAATACGAGTTATTGTGCTTGTG 60.129 38.462 0.00 0.00 42.64 3.33
216 218 6.090763 TCACAGAATACGAGTTATTGTGCTTG 59.909 38.462 0.00 0.00 42.64 4.01
217 219 6.090898 GTCACAGAATACGAGTTATTGTGCTT 59.909 38.462 0.00 0.00 42.64 3.91
218 220 5.577164 GTCACAGAATACGAGTTATTGTGCT 59.423 40.000 0.00 0.00 42.64 4.40
219 221 5.220416 GGTCACAGAATACGAGTTATTGTGC 60.220 44.000 0.00 0.25 42.64 4.57
220 222 5.291128 GGGTCACAGAATACGAGTTATTGTG 59.709 44.000 0.00 2.82 43.86 3.33
221 223 5.416947 GGGTCACAGAATACGAGTTATTGT 58.583 41.667 0.00 0.00 29.85 2.71
222 224 4.503007 CGGGTCACAGAATACGAGTTATTG 59.497 45.833 0.00 0.00 29.85 1.90
283 285 2.519622 CCTGTGTGGACTGGGCTCA 61.520 63.158 0.00 0.00 37.50 4.26
292 294 0.764271 TGTCAGCATTCCTGTGTGGA 59.236 50.000 0.00 0.00 44.51 4.02
333 335 1.447314 GTGAGGTTAGGCGGTTCGG 60.447 63.158 0.00 0.00 0.00 4.30
334 336 0.813184 TAGTGAGGTTAGGCGGTTCG 59.187 55.000 0.00 0.00 0.00 3.95
335 337 2.167900 ACATAGTGAGGTTAGGCGGTTC 59.832 50.000 0.00 0.00 0.00 3.62
540 542 0.035739 TACGTTGTTCTCCAAGGGGC 59.964 55.000 0.00 0.00 42.01 5.80
880 908 0.510359 GATGCCTTGCTATCTTCGCG 59.490 55.000 0.00 0.00 0.00 5.87
943 971 5.614887 CGAGGACAAAAATCTCGGAAAAGAC 60.615 44.000 0.00 0.00 44.40 3.01
995 1023 0.886490 GACACCGATCATCATGGCCC 60.886 60.000 0.00 0.00 0.00 5.80
1052 1080 3.668656 GCAAACTGATTTACCGTTGCTTC 59.331 43.478 0.00 0.00 0.00 3.86
1185 1217 4.856607 GCCTTCTCCGCCTCGTCG 62.857 72.222 0.00 0.00 0.00 5.12
1479 1511 4.778143 AGCATGGCGACGAACCCC 62.778 66.667 0.00 0.00 0.00 4.95
2338 2370 2.029649 GGCAGTGCATCAAACAGTGAAT 60.030 45.455 18.61 0.00 40.50 2.57
2636 2671 6.110033 TCTACAAAGTGCAAACAGTAGAACA 58.890 36.000 14.35 0.00 36.12 3.18
2637 2672 6.258068 ACTCTACAAAGTGCAAACAGTAGAAC 59.742 38.462 16.31 0.00 37.91 3.01
2638 2673 6.346096 ACTCTACAAAGTGCAAACAGTAGAA 58.654 36.000 16.31 6.05 37.91 2.10
2639 2674 5.914033 ACTCTACAAAGTGCAAACAGTAGA 58.086 37.500 15.32 15.32 36.54 2.59
2640 2675 5.986135 AGACTCTACAAAGTGCAAACAGTAG 59.014 40.000 9.96 9.96 0.00 2.57
2641 2676 5.753438 CAGACTCTACAAAGTGCAAACAGTA 59.247 40.000 0.00 0.00 0.00 2.74
2642 2677 4.572389 CAGACTCTACAAAGTGCAAACAGT 59.428 41.667 0.00 0.00 0.00 3.55
2643 2678 4.572389 ACAGACTCTACAAAGTGCAAACAG 59.428 41.667 0.00 0.00 0.00 3.16
2674 2709 5.173664 GGACGCCCACATTAACCTATATAC 58.826 45.833 0.00 0.00 0.00 1.47
2692 2731 3.236816 CATCACTGTGAAAAATGGACGC 58.763 45.455 15.31 0.00 0.00 5.19
2731 2770 6.520021 TCCCTAAATCAAGACCATGATCAT 57.480 37.500 1.18 1.18 39.08 2.45
3192 3231 2.230508 GGTGATAGAACATCCGCCGATA 59.769 50.000 0.00 0.00 0.00 2.92
3203 3242 6.072112 TGAAAAACAAGCTGGTGATAGAAC 57.928 37.500 0.00 0.00 0.00 3.01
3242 3281 2.288334 TGTTGATGGCATGCAACTGAAC 60.288 45.455 27.29 13.40 43.52 3.18
3332 3456 4.307032 ACCAGAAGCCAATTCATACACT 57.693 40.909 0.00 0.00 40.67 3.55
3351 3475 4.753107 TGGTTCAAAGAAACTCGATGTACC 59.247 41.667 2.75 2.75 32.37 3.34
3517 3642 1.345741 CAGTTGCTCCTGGAGAGTGAA 59.654 52.381 27.53 10.33 45.21 3.18
3582 3707 7.148787 GGATTAAGCGTCGAGTATAAATTGGAG 60.149 40.741 0.00 0.00 0.00 3.86
3616 3741 5.293814 CACATGAAAGAAACACATTTTGCCA 59.706 36.000 0.00 0.00 0.00 4.92
4437 4686 2.815503 TGATCGACACCAGAAGACGTTA 59.184 45.455 0.00 0.00 0.00 3.18
4629 4912 2.831685 AAGGTCAGACGTTGCACATA 57.168 45.000 7.71 0.00 0.00 2.29
4630 4913 2.831685 TAAGGTCAGACGTTGCACAT 57.168 45.000 17.12 0.00 0.00 3.21
4631 4914 2.831685 ATAAGGTCAGACGTTGCACA 57.168 45.000 17.12 0.00 0.00 4.57
4632 4915 3.001330 GCATATAAGGTCAGACGTTGCAC 59.999 47.826 17.12 0.99 0.00 4.57
4633 4916 3.194861 GCATATAAGGTCAGACGTTGCA 58.805 45.455 17.12 6.34 0.00 4.08
4634 4917 2.544267 GGCATATAAGGTCAGACGTTGC 59.456 50.000 17.12 12.57 0.00 4.17
4635 4918 3.131396 GGGCATATAAGGTCAGACGTTG 58.869 50.000 17.12 3.89 0.00 4.10
4636 4919 2.104281 GGGGCATATAAGGTCAGACGTT 59.896 50.000 12.94 12.94 0.00 3.99
4696 4979 9.556030 GCTATTAAAAAGATCAACAAGTACACC 57.444 33.333 0.00 0.00 0.00 4.16
4901 5184 5.529581 TTTACAAAAGGAGGGCAAAAGAG 57.470 39.130 0.00 0.00 0.00 2.85
4926 5209 5.991606 GCAAGGGCAAAAGAGAACTATTTTT 59.008 36.000 4.73 0.00 40.72 1.94
4927 5210 5.511373 GGCAAGGGCAAAAGAGAACTATTTT 60.511 40.000 2.01 2.01 43.71 1.82
4928 5211 4.021104 GGCAAGGGCAAAAGAGAACTATTT 60.021 41.667 0.00 0.00 43.71 1.40
4929 5212 3.511540 GGCAAGGGCAAAAGAGAACTATT 59.488 43.478 0.00 0.00 43.71 1.73
4930 5213 3.092301 GGCAAGGGCAAAAGAGAACTAT 58.908 45.455 0.00 0.00 43.71 2.12
4931 5214 2.514803 GGCAAGGGCAAAAGAGAACTA 58.485 47.619 0.00 0.00 43.71 2.24
4932 5215 1.332195 GGCAAGGGCAAAAGAGAACT 58.668 50.000 0.00 0.00 43.71 3.01
4933 5216 0.318441 GGGCAAGGGCAAAAGAGAAC 59.682 55.000 0.00 0.00 43.71 3.01
4934 5217 0.831711 GGGGCAAGGGCAAAAGAGAA 60.832 55.000 0.00 0.00 43.71 2.87
4935 5218 1.228862 GGGGCAAGGGCAAAAGAGA 60.229 57.895 0.00 0.00 43.71 3.10
4936 5219 0.906282 ATGGGGCAAGGGCAAAAGAG 60.906 55.000 0.00 0.00 43.71 2.85
4937 5220 0.473501 AATGGGGCAAGGGCAAAAGA 60.474 50.000 0.00 0.00 43.71 2.52
4938 5221 0.321830 CAATGGGGCAAGGGCAAAAG 60.322 55.000 0.00 0.00 43.71 2.27
4939 5222 1.059006 ACAATGGGGCAAGGGCAAAA 61.059 50.000 0.00 0.00 43.71 2.44
4940 5223 1.059006 AACAATGGGGCAAGGGCAAA 61.059 50.000 0.00 0.00 43.71 3.68
4941 5224 1.059006 AAACAATGGGGCAAGGGCAA 61.059 50.000 0.00 0.00 43.71 4.52
4942 5225 1.059006 AAAACAATGGGGCAAGGGCA 61.059 50.000 0.00 0.00 43.71 5.36
4943 5226 0.321564 GAAAACAATGGGGCAAGGGC 60.322 55.000 0.00 0.00 40.13 5.19
4944 5227 1.276138 GAGAAAACAATGGGGCAAGGG 59.724 52.381 0.00 0.00 0.00 3.95
4945 5228 2.250924 AGAGAAAACAATGGGGCAAGG 58.749 47.619 0.00 0.00 0.00 3.61
4946 5229 4.524328 ACTTAGAGAAAACAATGGGGCAAG 59.476 41.667 0.00 0.00 0.00 4.01
4947 5230 4.479158 ACTTAGAGAAAACAATGGGGCAA 58.521 39.130 0.00 0.00 0.00 4.52
4982 5279 9.113838 TGATAATCCAGATGAGAAAAGCTTTAC 57.886 33.333 13.10 7.94 0.00 2.01
5182 5480 4.436998 CCGGCCGACACAGAGTCC 62.437 72.222 30.73 0.00 44.66 3.85
5269 5567 1.968017 CATCACTTGCTGCCGTGGT 60.968 57.895 15.93 8.73 0.00 4.16
5443 5741 8.378421 CGTTATCTGATGTATGTATGCAATCAG 58.622 37.037 14.43 14.43 33.71 2.90
5506 5804 2.040544 AATGCTCAGGCGTTTCCGG 61.041 57.895 0.00 0.00 44.28 5.14
5507 5805 1.135315 CAATGCTCAGGCGTTTCCG 59.865 57.895 0.00 0.00 44.28 4.30
5561 5864 1.542915 CATCTCCCCAAAGCAACAGTG 59.457 52.381 0.00 0.00 0.00 3.66
5562 5865 1.145738 ACATCTCCCCAAAGCAACAGT 59.854 47.619 0.00 0.00 0.00 3.55
5623 5932 3.047877 ACAAAGCAGCGCCGGTAC 61.048 61.111 2.29 0.00 0.00 3.34
5630 5939 1.061799 GCACGAATCACAAAGCAGCG 61.062 55.000 0.00 0.00 0.00 5.18
5778 6088 3.077359 GTGCATCCAACTTACTTGCTCT 58.923 45.455 0.00 0.00 34.47 4.09
5779 6089 2.813754 TGTGCATCCAACTTACTTGCTC 59.186 45.455 0.00 0.00 34.47 4.26
5796 6113 7.421530 TCAACTGAAATCTAAGTAAGTGTGC 57.578 36.000 0.00 0.00 0.00 4.57
5802 6119 8.993121 CAGAAAGCTCAACTGAAATCTAAGTAA 58.007 33.333 8.45 0.00 34.07 2.24
5803 6120 8.150945 ACAGAAAGCTCAACTGAAATCTAAGTA 58.849 33.333 17.44 0.00 35.85 2.24
5810 6127 7.807977 TTCTAACAGAAAGCTCAACTGAAAT 57.192 32.000 17.44 8.62 35.85 2.17
5815 6132 7.148171 GGCATATTTCTAACAGAAAGCTCAACT 60.148 37.037 7.37 0.00 46.15 3.16
5942 6259 7.996385 ACTTGGTATTTGCTTATGTATTCACC 58.004 34.615 0.00 0.00 0.00 4.02
5971 6288 7.664731 ACGAGCTAGTATAGTAAAGGCTTCATA 59.335 37.037 0.00 0.00 41.93 2.15
5973 6290 5.826737 ACGAGCTAGTATAGTAAAGGCTTCA 59.173 40.000 0.00 0.00 41.93 3.02
5974 6291 6.316440 ACGAGCTAGTATAGTAAAGGCTTC 57.684 41.667 0.00 0.00 41.93 3.86
5981 6298 9.731819 CTTTTGATCAACGAGCTAGTATAGTAA 57.268 33.333 7.89 0.00 41.93 2.24
5987 6304 7.097192 ACAATCTTTTGATCAACGAGCTAGTA 58.903 34.615 7.89 0.00 38.40 1.82
5995 6312 8.574196 AAACCTTAACAATCTTTTGATCAACG 57.426 30.769 7.89 2.53 38.40 4.10
6093 6410 7.336176 ACGATCATATACTAAGCTAACGGATGA 59.664 37.037 0.00 0.00 0.00 2.92
6098 6415 9.823098 ACTAAACGATCATATACTAAGCTAACG 57.177 33.333 0.00 0.00 0.00 3.18
6117 6434 8.502161 AAAAAGCAGTAGCAATAAACTAAACG 57.498 30.769 0.00 0.00 45.49 3.60
6197 6515 5.858381 TGATAGCACACAAGATATTCCTCC 58.142 41.667 0.00 0.00 0.00 4.30
6206 6524 3.493129 GTGACGTTTGATAGCACACAAGA 59.507 43.478 0.00 0.00 0.00 3.02
6220 6538 4.691685 TCACACAGTTACAAAGTGACGTTT 59.308 37.500 8.99 0.00 34.59 3.60
6231 6549 7.165485 AGCACCTTTATATTCACACAGTTACA 58.835 34.615 0.00 0.00 0.00 2.41
6232 6550 7.611213 AGCACCTTTATATTCACACAGTTAC 57.389 36.000 0.00 0.00 0.00 2.50
6244 6562 8.823794 GGGAGTACCTATAAAGCACCTTTATAT 58.176 37.037 14.41 6.86 43.47 0.86
6245 6563 8.198807 GGGAGTACCTATAAAGCACCTTTATA 57.801 38.462 13.69 13.69 43.60 0.98
6266 6584 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
6267 6585 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
6268 6586 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
6271 6589 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
6272 6590 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
6273 6591 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
6274 6592 7.434307 TCATATTCGAGACAAGTAATTCCGAAC 59.566 37.037 0.00 0.00 37.38 3.95
6275 6593 7.485810 TCATATTCGAGACAAGTAATTCCGAA 58.514 34.615 0.00 0.00 38.59 4.30
6276 6594 7.034685 TCATATTCGAGACAAGTAATTCCGA 57.965 36.000 0.00 0.00 0.00 4.55
6277 6595 7.694388 TTCATATTCGAGACAAGTAATTCCG 57.306 36.000 0.00 0.00 0.00 4.30
6278 6596 9.046296 ACATTCATATTCGAGACAAGTAATTCC 57.954 33.333 0.00 0.00 0.00 3.01
6317 6635 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
6318 6636 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
6319 6637 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
6320 6638 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
6321 6639 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
6322 6640 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
6323 6641 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
6324 6642 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
6325 6643 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
6326 6644 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.