Multiple sequence alignment - TraesCS1A01G125200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G125200 chr1A 100.000 3067 0 0 1 3067 148743815 148746881 0.000000e+00 5664.0
1 TraesCS1A01G125200 chr1A 90.511 137 11 2 1 136 128053063 128053198 2.430000e-41 180.0
2 TraesCS1A01G125200 chr1B 94.212 1313 50 4 502 1790 196062826 196061516 0.000000e+00 1980.0
3 TraesCS1A01G125200 chr1B 86.244 836 87 12 2253 3067 196060276 196059448 0.000000e+00 881.0
4 TraesCS1A01G125200 chr1B 94.212 311 17 1 1881 2191 196061508 196061199 9.950000e-130 473.0
5 TraesCS1A01G125200 chr1B 90.580 138 12 1 1 138 240300340 240300476 6.760000e-42 182.0
6 TraesCS1A01G125200 chr1B 95.349 86 4 0 1797 1882 10053614 10053699 1.480000e-28 137.0
7 TraesCS1A01G125200 chr1B 92.045 88 7 0 1796 1883 686828874 686828787 1.150000e-24 124.0
8 TraesCS1A01G125200 chr1B 96.875 64 2 0 2187 2250 196060893 196060830 1.160000e-19 108.0
9 TraesCS1A01G125200 chr1D 94.388 1283 43 6 533 1790 141900553 141899275 0.000000e+00 1943.0
10 TraesCS1A01G125200 chr1D 86.022 837 86 13 2253 3067 141898311 141897484 0.000000e+00 869.0
11 TraesCS1A01G125200 chr1D 94.638 373 16 2 1881 2250 141899267 141898896 2.650000e-160 575.0
12 TraesCS1A01G125200 chr1D 87.977 341 41 0 2727 3067 338746558 338746218 1.320000e-108 403.0
13 TraesCS1A01G125200 chr1D 86.391 338 46 0 2724 3061 414244389 414244052 1.340000e-98 370.0
14 TraesCS1A01G125200 chr5D 80.695 834 109 25 2253 3067 512390474 512389674 4.380000e-168 601.0
15 TraesCS1A01G125200 chr5D 81.884 138 16 8 240 373 371292086 371292218 1.160000e-19 108.0
16 TraesCS1A01G125200 chr4B 83.408 669 87 9 2415 3061 168573730 168574396 1.570000e-167 599.0
17 TraesCS1A01G125200 chr4B 95.455 88 4 0 1795 1882 500267249 500267336 1.150000e-29 141.0
18 TraesCS1A01G125200 chr4A 80.211 758 105 16 2330 3067 518857205 518856473 7.530000e-146 527.0
19 TraesCS1A01G125200 chr4A 80.305 721 111 22 2353 3061 416226989 416227690 1.630000e-142 516.0
20 TraesCS1A01G125200 chr4A 85.294 102 12 3 229 328 100123311 100123411 5.410000e-18 102.0
21 TraesCS1A01G125200 chr3D 85.808 458 53 6 2621 3067 116088791 116088335 2.770000e-130 475.0
22 TraesCS1A01G125200 chr3D 91.176 136 10 2 1 136 238678251 238678384 1.880000e-42 183.0
23 TraesCS1A01G125200 chr3D 91.176 136 11 1 1 136 530763180 530763046 1.880000e-42 183.0
24 TraesCS1A01G125200 chr3D 80.556 180 18 15 202 373 26158597 26158767 4.150000e-24 122.0
25 TraesCS1A01G125200 chr3A 84.286 490 62 8 2583 3057 51696888 51696399 5.990000e-127 464.0
26 TraesCS1A01G125200 chr5B 84.868 456 53 5 2626 3067 439877650 439877197 2.170000e-121 446.0
27 TraesCS1A01G125200 chr5A 83.047 466 68 3 2606 3061 354971968 354971504 2.200000e-111 412.0
28 TraesCS1A01G125200 chr5A 79.803 203 26 7 203 401 608602929 608603120 1.920000e-27 134.0
29 TraesCS1A01G125200 chr2D 87.311 331 41 1 2727 3057 377054559 377054230 8.030000e-101 377.0
30 TraesCS1A01G125200 chr2D 90.141 142 12 2 1 142 517271136 517270997 1.880000e-42 183.0
31 TraesCS1A01G125200 chr2D 89.437 142 12 3 1 142 442433001 442432863 3.140000e-40 176.0
32 TraesCS1A01G125200 chr2D 94.318 88 5 0 1795 1882 384255185 384255272 5.330000e-28 135.0
33 TraesCS1A01G125200 chr2D 94.253 87 5 0 1796 1882 602668484 602668570 1.920000e-27 134.0
34 TraesCS1A01G125200 chr2D 93.258 89 6 0 1795 1883 567672210 567672298 6.900000e-27 132.0
35 TraesCS1A01G125200 chr7A 83.465 254 27 6 2527 2765 733715854 733715601 3.980000e-54 222.0
36 TraesCS1A01G125200 chr6A 91.912 136 10 1 1 136 444710813 444710679 4.040000e-44 189.0
37 TraesCS1A01G125200 chr6A 81.437 167 21 9 234 395 407078054 407078215 8.930000e-26 128.0
38 TraesCS1A01G125200 chr4D 91.304 138 10 2 1 137 280329402 280329266 1.450000e-43 187.0
39 TraesCS1A01G125200 chr3B 90.000 140 13 1 1 140 349853285 349853147 2.430000e-41 180.0
40 TraesCS1A01G125200 chr7D 94.444 90 4 1 1795 1883 510586432 510586343 1.480000e-28 137.0
41 TraesCS1A01G125200 chr6D 92.632 95 7 0 1795 1889 30079470 30079376 1.480000e-28 137.0
42 TraesCS1A01G125200 chr6D 97.297 37 1 0 263 299 308329274 308329310 2.550000e-06 63.9
43 TraesCS1A01G125200 chr2A 94.318 88 5 0 1795 1882 118440623 118440536 5.330000e-28 135.0
44 TraesCS1A01G125200 chr2A 79.412 136 24 4 206 341 542567812 542567943 3.260000e-15 93.5
45 TraesCS1A01G125200 chr2A 97.368 38 1 0 263 300 78602214 78602177 7.100000e-07 65.8
46 TraesCS1A01G125200 chr2B 78.756 193 31 8 213 401 103709783 103709597 1.490000e-23 121.0
47 TraesCS1A01G125200 chr7B 96.875 32 1 0 466 497 605658797 605658766 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G125200 chr1A 148743815 148746881 3066 False 5664.0 5664 100.000000 1 3067 1 chr1A.!!$F2 3066
1 TraesCS1A01G125200 chr1B 196059448 196062826 3378 True 860.5 1980 92.885750 502 3067 4 chr1B.!!$R2 2565
2 TraesCS1A01G125200 chr1D 141897484 141900553 3069 True 1129.0 1943 91.682667 533 3067 3 chr1D.!!$R3 2534
3 TraesCS1A01G125200 chr5D 512389674 512390474 800 True 601.0 601 80.695000 2253 3067 1 chr5D.!!$R1 814
4 TraesCS1A01G125200 chr4B 168573730 168574396 666 False 599.0 599 83.408000 2415 3061 1 chr4B.!!$F1 646
5 TraesCS1A01G125200 chr4A 518856473 518857205 732 True 527.0 527 80.211000 2330 3067 1 chr4A.!!$R1 737
6 TraesCS1A01G125200 chr4A 416226989 416227690 701 False 516.0 516 80.305000 2353 3061 1 chr4A.!!$F2 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.033208 GACAATCTGGGATGGGCCAA 60.033 55.0 11.89 0.0 38.95 4.52 F
187 188 0.040692 GTTTCAGGGCGAAAACCGTC 60.041 55.0 0.00 0.0 45.11 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1546 0.251354 AGTCGTAGTAGAGGTCGCCA 59.749 55.0 0.00 0.0 0.0 5.69 R
2142 2167 0.258774 ACCAATCTATGTGCACCCCC 59.741 55.0 15.69 0.0 0.0 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.721704 AGGACGTAGGGTTTTACCTATTAG 57.278 41.667 0.00 0.00 44.48 1.73
24 25 6.435164 AGGACGTAGGGTTTTACCTATTAGA 58.565 40.000 0.00 0.00 44.48 2.10
25 26 6.548993 AGGACGTAGGGTTTTACCTATTAGAG 59.451 42.308 0.00 0.00 44.48 2.43
26 27 6.547510 GGACGTAGGGTTTTACCTATTAGAGA 59.452 42.308 0.00 0.00 44.48 3.10
27 28 7.255416 GGACGTAGGGTTTTACCTATTAGAGAG 60.255 44.444 0.00 0.00 44.48 3.20
28 29 6.548993 ACGTAGGGTTTTACCTATTAGAGAGG 59.451 42.308 0.00 0.00 44.48 3.69
29 30 6.015603 CGTAGGGTTTTACCTATTAGAGAGGG 60.016 46.154 0.00 0.00 44.48 4.30
30 31 4.659368 AGGGTTTTACCTATTAGAGAGGGC 59.341 45.833 0.00 0.00 39.65 5.19
31 32 4.202440 GGGTTTTACCTATTAGAGAGGGCC 60.202 50.000 0.00 0.00 38.64 5.80
32 33 4.202440 GGTTTTACCTATTAGAGAGGGCCC 60.202 50.000 16.46 16.46 38.52 5.80
33 34 3.271153 TTACCTATTAGAGAGGGCCCC 57.729 52.381 21.43 10.60 38.52 5.80
34 35 0.949582 ACCTATTAGAGAGGGCCCCA 59.050 55.000 21.43 0.00 38.52 4.96
35 36 1.297141 ACCTATTAGAGAGGGCCCCAA 59.703 52.381 21.43 5.42 38.52 4.12
36 37 1.700186 CCTATTAGAGAGGGCCCCAAC 59.300 57.143 21.43 10.95 0.00 3.77
37 38 1.700186 CTATTAGAGAGGGCCCCAACC 59.300 57.143 21.43 5.45 0.00 3.77
38 39 0.046397 ATTAGAGAGGGCCCCAACCT 59.954 55.000 21.43 13.44 42.18 3.50
39 40 0.720232 TTAGAGAGGGCCCCAACCTA 59.280 55.000 21.43 12.34 38.79 3.08
40 41 0.264955 TAGAGAGGGCCCCAACCTAG 59.735 60.000 21.43 0.00 38.79 3.02
41 42 2.042930 AGAGGGCCCCAACCTAGG 59.957 66.667 21.43 7.41 38.79 3.02
42 43 2.286197 GAGGGCCCCAACCTAGGT 60.286 66.667 21.43 9.21 38.79 3.08
43 44 1.003835 GAGGGCCCCAACCTAGGTA 59.996 63.158 21.43 0.00 38.79 3.08
44 45 0.622446 GAGGGCCCCAACCTAGGTAA 60.622 60.000 21.43 0.00 38.79 2.85
45 46 0.178825 AGGGCCCCAACCTAGGTAAA 60.179 55.000 21.43 0.00 36.32 2.01
46 47 0.033796 GGGCCCCAACCTAGGTAAAC 60.034 60.000 16.67 3.32 0.00 2.01
47 48 0.699981 GGCCCCAACCTAGGTAAACA 59.300 55.000 16.67 0.00 0.00 2.83
48 49 1.615116 GGCCCCAACCTAGGTAAACAC 60.615 57.143 16.67 5.22 0.00 3.32
49 50 1.615116 GCCCCAACCTAGGTAAACACC 60.615 57.143 16.67 0.00 0.00 4.16
50 51 1.339342 CCCCAACCTAGGTAAACACCG 60.339 57.143 16.67 0.00 34.28 4.94
51 52 1.348696 CCCAACCTAGGTAAACACCGT 59.651 52.381 16.67 0.00 34.28 4.83
52 53 2.419667 CCAACCTAGGTAAACACCGTG 58.580 52.381 16.67 6.93 34.28 4.94
53 54 2.224354 CCAACCTAGGTAAACACCGTGT 60.224 50.000 16.67 0.00 34.28 4.49
54 55 3.062042 CAACCTAGGTAAACACCGTGTC 58.938 50.000 16.67 0.00 34.28 3.67
55 56 1.620323 ACCTAGGTAAACACCGTGTCC 59.380 52.381 14.41 2.09 34.28 4.02
56 57 1.897802 CCTAGGTAAACACCGTGTCCT 59.102 52.381 13.39 13.39 34.28 3.85
57 58 2.301009 CCTAGGTAAACACCGTGTCCTT 59.699 50.000 13.93 5.04 34.28 3.36
58 59 2.538512 AGGTAAACACCGTGTCCTTC 57.461 50.000 4.23 0.00 34.28 3.46
59 60 1.142474 GGTAAACACCGTGTCCTTCG 58.858 55.000 4.23 0.00 0.00 3.79
60 61 1.538849 GGTAAACACCGTGTCCTTCGT 60.539 52.381 4.23 0.00 0.00 3.85
61 62 1.523934 GTAAACACCGTGTCCTTCGTG 59.476 52.381 4.23 0.00 0.00 4.35
62 63 1.433837 AAACACCGTGTCCTTCGTGC 61.434 55.000 4.23 0.00 0.00 5.34
63 64 3.041940 CACCGTGTCCTTCGTGCC 61.042 66.667 0.00 0.00 0.00 5.01
64 65 3.231736 ACCGTGTCCTTCGTGCCT 61.232 61.111 0.00 0.00 0.00 4.75
65 66 2.030562 CCGTGTCCTTCGTGCCTT 59.969 61.111 0.00 0.00 0.00 4.35
66 67 1.597027 CCGTGTCCTTCGTGCCTTT 60.597 57.895 0.00 0.00 0.00 3.11
67 68 1.569493 CGTGTCCTTCGTGCCTTTG 59.431 57.895 0.00 0.00 0.00 2.77
68 69 1.157870 CGTGTCCTTCGTGCCTTTGT 61.158 55.000 0.00 0.00 0.00 2.83
69 70 1.021968 GTGTCCTTCGTGCCTTTGTT 58.978 50.000 0.00 0.00 0.00 2.83
70 71 1.404035 GTGTCCTTCGTGCCTTTGTTT 59.596 47.619 0.00 0.00 0.00 2.83
71 72 1.673920 TGTCCTTCGTGCCTTTGTTTC 59.326 47.619 0.00 0.00 0.00 2.78
72 73 1.001706 GTCCTTCGTGCCTTTGTTTCC 60.002 52.381 0.00 0.00 0.00 3.13
73 74 0.313987 CCTTCGTGCCTTTGTTTCCC 59.686 55.000 0.00 0.00 0.00 3.97
74 75 1.028905 CTTCGTGCCTTTGTTTCCCA 58.971 50.000 0.00 0.00 0.00 4.37
75 76 1.613437 CTTCGTGCCTTTGTTTCCCAT 59.387 47.619 0.00 0.00 0.00 4.00
76 77 1.698506 TCGTGCCTTTGTTTCCCATT 58.301 45.000 0.00 0.00 0.00 3.16
77 78 1.339610 TCGTGCCTTTGTTTCCCATTG 59.660 47.619 0.00 0.00 0.00 2.82
78 79 1.339610 CGTGCCTTTGTTTCCCATTGA 59.660 47.619 0.00 0.00 0.00 2.57
79 80 2.029110 CGTGCCTTTGTTTCCCATTGAT 60.029 45.455 0.00 0.00 0.00 2.57
80 81 3.588955 GTGCCTTTGTTTCCCATTGATC 58.411 45.455 0.00 0.00 0.00 2.92
81 82 2.566724 TGCCTTTGTTTCCCATTGATCC 59.433 45.455 0.00 0.00 0.00 3.36
82 83 2.566724 GCCTTTGTTTCCCATTGATCCA 59.433 45.455 0.00 0.00 0.00 3.41
83 84 3.007831 GCCTTTGTTTCCCATTGATCCAA 59.992 43.478 0.00 0.00 0.00 3.53
84 85 4.824289 CCTTTGTTTCCCATTGATCCAAG 58.176 43.478 0.00 0.00 0.00 3.61
85 86 4.527816 CCTTTGTTTCCCATTGATCCAAGA 59.472 41.667 0.00 0.00 0.00 3.02
86 87 5.188359 CCTTTGTTTCCCATTGATCCAAGAT 59.812 40.000 0.00 0.00 0.00 2.40
87 88 5.920193 TTGTTTCCCATTGATCCAAGATC 57.080 39.130 0.00 0.00 0.00 2.75
88 89 4.280819 TGTTTCCCATTGATCCAAGATCC 58.719 43.478 2.29 0.00 0.00 3.36
89 90 4.264307 TGTTTCCCATTGATCCAAGATCCA 60.264 41.667 2.29 0.00 0.00 3.41
90 91 3.582998 TCCCATTGATCCAAGATCCAC 57.417 47.619 2.29 0.00 0.00 4.02
91 92 2.851821 TCCCATTGATCCAAGATCCACA 59.148 45.455 2.29 0.00 0.00 4.17
92 93 3.269118 TCCCATTGATCCAAGATCCACAA 59.731 43.478 2.29 0.00 0.00 3.33
93 94 3.382546 CCCATTGATCCAAGATCCACAAC 59.617 47.826 2.29 0.00 0.00 3.32
94 95 4.275810 CCATTGATCCAAGATCCACAACT 58.724 43.478 2.29 0.00 0.00 3.16
95 96 4.337555 CCATTGATCCAAGATCCACAACTC 59.662 45.833 2.29 0.00 0.00 3.01
96 97 3.251479 TGATCCAAGATCCACAACTCG 57.749 47.619 2.29 0.00 0.00 4.18
97 98 2.093500 TGATCCAAGATCCACAACTCGG 60.093 50.000 2.29 0.00 0.00 4.63
98 99 0.613260 TCCAAGATCCACAACTCGGG 59.387 55.000 0.00 0.00 0.00 5.14
99 100 1.026718 CCAAGATCCACAACTCGGGC 61.027 60.000 0.00 0.00 0.00 6.13
100 101 1.026718 CAAGATCCACAACTCGGGCC 61.027 60.000 0.00 0.00 0.00 5.80
101 102 2.124695 GATCCACAACTCGGGCCC 60.125 66.667 13.57 13.57 0.00 5.80
102 103 3.699134 GATCCACAACTCGGGCCCC 62.699 68.421 18.66 0.00 0.00 5.80
117 118 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
118 119 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
119 120 2.203509 CCCTACCCGAGATCCGCT 60.204 66.667 0.00 0.00 36.84 5.52
120 121 2.565645 CCCTACCCGAGATCCGCTG 61.566 68.421 0.00 0.00 36.84 5.18
121 122 2.565645 CCTACCCGAGATCCGCTGG 61.566 68.421 0.00 0.00 36.84 4.85
122 123 1.828660 CTACCCGAGATCCGCTGGT 60.829 63.158 4.98 4.98 36.85 4.00
123 124 1.380785 TACCCGAGATCCGCTGGTT 60.381 57.895 4.92 0.00 35.12 3.67
124 125 0.974010 TACCCGAGATCCGCTGGTTT 60.974 55.000 4.92 0.00 35.12 3.27
125 126 1.078426 CCCGAGATCCGCTGGTTTT 60.078 57.895 0.00 0.00 36.84 2.43
126 127 1.369091 CCCGAGATCCGCTGGTTTTG 61.369 60.000 0.00 0.00 36.84 2.44
127 128 0.391130 CCGAGATCCGCTGGTTTTGA 60.391 55.000 0.00 0.00 36.84 2.69
128 129 0.721718 CGAGATCCGCTGGTTTTGAC 59.278 55.000 0.00 0.00 0.00 3.18
129 130 1.808411 GAGATCCGCTGGTTTTGACA 58.192 50.000 0.00 0.00 0.00 3.58
130 131 1.464997 GAGATCCGCTGGTTTTGACAC 59.535 52.381 0.00 0.00 0.00 3.67
131 132 0.521735 GATCCGCTGGTTTTGACACC 59.478 55.000 0.00 0.00 37.34 4.16
132 133 1.234615 ATCCGCTGGTTTTGACACCG 61.235 55.000 0.00 0.00 40.09 4.94
133 134 1.890041 CCGCTGGTTTTGACACCGA 60.890 57.895 0.00 0.00 40.09 4.69
134 135 1.278637 CGCTGGTTTTGACACCGAC 59.721 57.895 0.00 0.00 40.09 4.79
135 136 1.433053 CGCTGGTTTTGACACCGACA 61.433 55.000 0.00 0.00 40.09 4.35
136 137 0.736053 GCTGGTTTTGACACCGACAA 59.264 50.000 0.00 0.00 40.09 3.18
137 138 1.336755 GCTGGTTTTGACACCGACAAT 59.663 47.619 0.00 0.00 40.09 2.71
138 139 2.604614 GCTGGTTTTGACACCGACAATC 60.605 50.000 0.00 0.00 40.09 2.67
139 140 2.878406 CTGGTTTTGACACCGACAATCT 59.122 45.455 0.00 0.00 40.09 2.40
140 141 2.616376 TGGTTTTGACACCGACAATCTG 59.384 45.455 0.00 0.00 40.09 2.90
141 142 2.031157 GGTTTTGACACCGACAATCTGG 60.031 50.000 0.00 0.00 0.00 3.86
142 143 1.890876 TTTGACACCGACAATCTGGG 58.109 50.000 0.00 0.00 0.00 4.45
143 144 1.052617 TTGACACCGACAATCTGGGA 58.947 50.000 0.00 0.00 0.00 4.37
144 145 1.275666 TGACACCGACAATCTGGGAT 58.724 50.000 0.00 0.00 0.00 3.85
145 146 1.066215 TGACACCGACAATCTGGGATG 60.066 52.381 0.00 0.00 0.00 3.51
146 147 0.253044 ACACCGACAATCTGGGATGG 59.747 55.000 0.00 0.00 0.00 3.51
147 148 0.464373 CACCGACAATCTGGGATGGG 60.464 60.000 0.00 0.00 0.00 4.00
148 149 1.526917 CCGACAATCTGGGATGGGC 60.527 63.158 0.00 0.00 0.00 5.36
149 150 1.526917 CGACAATCTGGGATGGGCC 60.527 63.158 0.00 0.00 0.00 5.80
150 151 1.614711 GACAATCTGGGATGGGCCA 59.385 57.895 9.61 9.61 38.95 5.36
151 152 0.033208 GACAATCTGGGATGGGCCAA 60.033 55.000 11.89 0.00 38.95 4.52
152 153 0.324645 ACAATCTGGGATGGGCCAAC 60.325 55.000 11.89 8.12 38.95 3.77
153 154 1.076777 AATCTGGGATGGGCCAACG 60.077 57.895 11.89 0.00 38.95 4.10
154 155 2.572333 AATCTGGGATGGGCCAACGG 62.572 60.000 11.89 9.62 38.95 4.44
155 156 4.820744 CTGGGATGGGCCAACGGG 62.821 72.222 11.89 0.00 38.95 5.28
174 175 4.404654 GGCGGCGGCAAGTTTCAG 62.405 66.667 29.41 0.00 42.47 3.02
175 176 4.404654 GCGGCGGCAAGTTTCAGG 62.405 66.667 9.78 0.00 39.62 3.86
176 177 3.737172 CGGCGGCAAGTTTCAGGG 61.737 66.667 10.53 0.00 0.00 4.45
177 178 4.056125 GGCGGCAAGTTTCAGGGC 62.056 66.667 3.07 0.00 0.00 5.19
180 181 3.758172 GGCAAGTTTCAGGGCGAA 58.242 55.556 0.00 0.00 0.00 4.70
181 182 2.037871 GGCAAGTTTCAGGGCGAAA 58.962 52.632 0.00 0.00 41.40 3.46
182 183 0.387565 GGCAAGTTTCAGGGCGAAAA 59.612 50.000 0.00 0.00 45.11 2.29
183 184 1.487482 GCAAGTTTCAGGGCGAAAAC 58.513 50.000 0.00 0.00 45.11 2.43
184 185 1.868109 GCAAGTTTCAGGGCGAAAACC 60.868 52.381 0.00 0.00 45.11 3.27
185 186 0.666374 AAGTTTCAGGGCGAAAACCG 59.334 50.000 0.00 0.00 45.11 4.44
186 187 0.464916 AGTTTCAGGGCGAAAACCGT 60.465 50.000 0.00 0.00 45.11 4.83
187 188 0.040692 GTTTCAGGGCGAAAACCGTC 60.041 55.000 0.00 0.00 45.11 4.79
188 189 0.464013 TTTCAGGGCGAAAACCGTCA 60.464 50.000 0.00 0.00 46.37 4.35
189 190 0.464013 TTCAGGGCGAAAACCGTCAA 60.464 50.000 0.00 0.00 46.37 3.18
190 191 1.161563 TCAGGGCGAAAACCGTCAAC 61.162 55.000 0.00 0.00 46.37 3.18
191 192 2.248835 AGGGCGAAAACCGTCAACG 61.249 57.895 0.00 0.00 46.37 4.10
201 202 4.351938 CGTCAACGGGCGGAGTGA 62.352 66.667 0.00 0.00 35.37 3.41
202 203 2.029964 GTCAACGGGCGGAGTGAA 59.970 61.111 0.00 0.00 0.00 3.18
203 204 1.595929 GTCAACGGGCGGAGTGAAA 60.596 57.895 0.00 0.00 0.00 2.69
204 205 0.953960 GTCAACGGGCGGAGTGAAAT 60.954 55.000 0.00 0.00 0.00 2.17
205 206 0.953471 TCAACGGGCGGAGTGAAATG 60.953 55.000 0.00 0.00 0.00 2.32
206 207 0.953471 CAACGGGCGGAGTGAAATGA 60.953 55.000 0.00 0.00 0.00 2.57
207 208 0.250553 AACGGGCGGAGTGAAATGAA 60.251 50.000 0.00 0.00 0.00 2.57
208 209 0.673644 ACGGGCGGAGTGAAATGAAG 60.674 55.000 0.00 0.00 0.00 3.02
209 210 1.369091 CGGGCGGAGTGAAATGAAGG 61.369 60.000 0.00 0.00 0.00 3.46
210 211 1.657751 GGGCGGAGTGAAATGAAGGC 61.658 60.000 0.00 0.00 0.00 4.35
211 212 1.425428 GCGGAGTGAAATGAAGGCG 59.575 57.895 0.00 0.00 0.00 5.52
212 213 1.982073 GCGGAGTGAAATGAAGGCGG 61.982 60.000 0.00 0.00 0.00 6.13
213 214 0.673644 CGGAGTGAAATGAAGGCGGT 60.674 55.000 0.00 0.00 0.00 5.68
214 215 1.534729 GGAGTGAAATGAAGGCGGTT 58.465 50.000 0.00 0.00 0.00 4.44
215 216 1.200020 GGAGTGAAATGAAGGCGGTTG 59.800 52.381 0.00 0.00 0.00 3.77
216 217 1.200020 GAGTGAAATGAAGGCGGTTGG 59.800 52.381 0.00 0.00 0.00 3.77
217 218 0.243636 GTGAAATGAAGGCGGTTGGG 59.756 55.000 0.00 0.00 0.00 4.12
218 219 1.215382 GAAATGAAGGCGGTTGGGC 59.785 57.895 0.00 0.00 42.69 5.36
228 229 4.114997 GGTTGGGCGATTGGCGTG 62.115 66.667 0.00 0.00 44.92 5.34
229 230 3.361977 GTTGGGCGATTGGCGTGT 61.362 61.111 0.00 0.00 44.92 4.49
230 231 3.361158 TTGGGCGATTGGCGTGTG 61.361 61.111 0.00 0.00 44.92 3.82
231 232 3.834013 TTGGGCGATTGGCGTGTGA 62.834 57.895 0.00 0.00 44.92 3.58
232 233 3.499737 GGGCGATTGGCGTGTGAG 61.500 66.667 0.00 0.00 44.92 3.51
233 234 4.166011 GGCGATTGGCGTGTGAGC 62.166 66.667 0.00 0.00 44.92 4.26
234 235 4.505217 GCGATTGGCGTGTGAGCG 62.505 66.667 0.00 0.00 43.41 5.03
242 243 3.022287 CGTGTGAGCGCCAGTTTT 58.978 55.556 2.29 0.00 0.00 2.43
243 244 2.230892 CGTGTGAGCGCCAGTTTTA 58.769 52.632 2.29 0.00 0.00 1.52
244 245 0.110823 CGTGTGAGCGCCAGTTTTAC 60.111 55.000 2.29 0.00 0.00 2.01
245 246 0.941542 GTGTGAGCGCCAGTTTTACA 59.058 50.000 2.29 0.00 0.00 2.41
246 247 1.535462 GTGTGAGCGCCAGTTTTACAT 59.465 47.619 2.29 0.00 0.00 2.29
247 248 1.804151 TGTGAGCGCCAGTTTTACATC 59.196 47.619 2.29 0.00 0.00 3.06
248 249 2.076863 GTGAGCGCCAGTTTTACATCT 58.923 47.619 2.29 0.00 0.00 2.90
249 250 2.094417 GTGAGCGCCAGTTTTACATCTC 59.906 50.000 2.29 0.00 0.00 2.75
250 251 1.666189 GAGCGCCAGTTTTACATCTCC 59.334 52.381 2.29 0.00 0.00 3.71
251 252 1.279271 AGCGCCAGTTTTACATCTCCT 59.721 47.619 2.29 0.00 0.00 3.69
252 253 2.084546 GCGCCAGTTTTACATCTCCTT 58.915 47.619 0.00 0.00 0.00 3.36
253 254 2.159517 GCGCCAGTTTTACATCTCCTTG 60.160 50.000 0.00 0.00 0.00 3.61
254 255 3.074412 CGCCAGTTTTACATCTCCTTGT 58.926 45.455 0.00 0.00 0.00 3.16
255 256 4.250464 CGCCAGTTTTACATCTCCTTGTA 58.750 43.478 0.00 0.00 0.00 2.41
256 257 4.330074 CGCCAGTTTTACATCTCCTTGTAG 59.670 45.833 0.00 0.00 33.81 2.74
257 258 4.636206 GCCAGTTTTACATCTCCTTGTAGG 59.364 45.833 0.00 0.00 33.81 3.18
258 259 5.803470 GCCAGTTTTACATCTCCTTGTAGGT 60.803 44.000 0.00 0.00 36.53 3.08
259 260 5.643777 CCAGTTTTACATCTCCTTGTAGGTG 59.356 44.000 0.00 0.00 36.53 4.00
260 261 5.643777 CAGTTTTACATCTCCTTGTAGGTGG 59.356 44.000 0.00 0.00 36.53 4.61
261 262 5.546499 AGTTTTACATCTCCTTGTAGGTGGA 59.454 40.000 0.00 0.00 36.53 4.02
274 275 7.719633 TCCTTGTAGGTGGAGATATAAATTTGC 59.280 37.037 0.00 0.00 36.53 3.68
275 276 7.502226 CCTTGTAGGTGGAGATATAAATTTGCA 59.498 37.037 0.00 0.00 0.00 4.08
276 277 8.995027 TTGTAGGTGGAGATATAAATTTGCAT 57.005 30.769 0.00 0.00 0.00 3.96
277 278 8.621532 TGTAGGTGGAGATATAAATTTGCATC 57.378 34.615 0.00 3.57 0.00 3.91
278 279 6.808008 AGGTGGAGATATAAATTTGCATCG 57.192 37.500 0.00 0.00 0.00 3.84
279 280 5.182001 AGGTGGAGATATAAATTTGCATCGC 59.818 40.000 0.00 5.19 0.00 4.58
280 281 5.082059 GTGGAGATATAAATTTGCATCGCG 58.918 41.667 0.00 0.00 0.00 5.87
281 282 4.994217 TGGAGATATAAATTTGCATCGCGA 59.006 37.500 13.09 13.09 0.00 5.87
282 283 5.120674 TGGAGATATAAATTTGCATCGCGAG 59.879 40.000 16.66 8.11 0.00 5.03
283 284 5.446473 GGAGATATAAATTTGCATCGCGAGG 60.446 44.000 17.78 17.78 0.00 4.63
284 285 4.997395 AGATATAAATTTGCATCGCGAGGT 59.003 37.500 22.83 3.43 0.00 3.85
286 287 0.881118 AAATTTGCATCGCGAGGTGT 59.119 45.000 22.83 0.00 46.24 4.16
287 288 0.881118 AATTTGCATCGCGAGGTGTT 59.119 45.000 22.83 9.14 46.24 3.32
288 289 0.168788 ATTTGCATCGCGAGGTGTTG 59.831 50.000 22.83 12.47 46.24 3.33
289 290 1.163420 TTTGCATCGCGAGGTGTTGT 61.163 50.000 22.83 0.00 46.24 3.32
290 291 0.319986 TTGCATCGCGAGGTGTTGTA 60.320 50.000 22.83 8.03 46.24 2.41
291 292 0.108377 TGCATCGCGAGGTGTTGTAT 60.108 50.000 22.83 0.00 46.24 2.29
292 293 1.006832 GCATCGCGAGGTGTTGTATT 58.993 50.000 22.83 0.00 46.24 1.89
293 294 1.396996 GCATCGCGAGGTGTTGTATTT 59.603 47.619 22.83 0.00 46.24 1.40
294 295 2.159572 GCATCGCGAGGTGTTGTATTTT 60.160 45.455 22.83 0.00 46.24 1.82
295 296 3.062909 GCATCGCGAGGTGTTGTATTTTA 59.937 43.478 22.83 0.00 46.24 1.52
296 297 4.574759 CATCGCGAGGTGTTGTATTTTAC 58.425 43.478 16.66 0.00 37.47 2.01
297 298 3.651206 TCGCGAGGTGTTGTATTTTACA 58.349 40.909 3.71 0.00 36.79 2.41
298 299 4.247258 TCGCGAGGTGTTGTATTTTACAT 58.753 39.130 3.71 0.00 38.68 2.29
299 300 4.691685 TCGCGAGGTGTTGTATTTTACATT 59.308 37.500 3.71 0.00 38.68 2.71
300 301 5.179742 TCGCGAGGTGTTGTATTTTACATTT 59.820 36.000 3.71 0.00 38.68 2.32
301 302 5.854338 CGCGAGGTGTTGTATTTTACATTTT 59.146 36.000 0.00 0.00 38.68 1.82
302 303 6.032042 CGCGAGGTGTTGTATTTTACATTTTC 59.968 38.462 0.00 0.00 38.68 2.29
303 304 6.032042 GCGAGGTGTTGTATTTTACATTTTCG 59.968 38.462 0.00 0.00 38.68 3.46
304 305 7.292292 CGAGGTGTTGTATTTTACATTTTCGA 58.708 34.615 0.00 0.00 38.68 3.71
305 306 7.799447 CGAGGTGTTGTATTTTACATTTTCGAA 59.201 33.333 0.00 0.00 38.68 3.71
306 307 9.453325 GAGGTGTTGTATTTTACATTTTCGAAA 57.547 29.630 6.47 6.47 38.68 3.46
307 308 9.458374 AGGTGTTGTATTTTACATTTTCGAAAG 57.542 29.630 10.98 3.11 38.68 2.62
308 309 9.453325 GGTGTTGTATTTTACATTTTCGAAAGA 57.547 29.630 10.98 3.16 38.68 2.52
310 311 9.160576 TGTTGTATTTTACATTTTCGAAAGACG 57.839 29.630 10.98 6.25 38.10 4.18
311 312 9.372541 GTTGTATTTTACATTTTCGAAAGACGA 57.627 29.630 10.98 0.00 43.01 4.20
312 313 9.932699 TTGTATTTTACATTTTCGAAAGACGAA 57.067 25.926 10.98 0.00 46.93 3.85
313 314 9.588774 TGTATTTTACATTTTCGAAAGACGAAG 57.411 29.630 10.98 0.00 46.02 3.79
352 353 7.830940 TTGCATCTACAATATTTTGCAAAGG 57.169 32.000 12.41 3.98 44.39 3.11
353 354 6.934056 TGCATCTACAATATTTTGCAAAGGT 58.066 32.000 12.41 8.07 37.17 3.50
354 355 6.812656 TGCATCTACAATATTTTGCAAAGGTG 59.187 34.615 12.41 11.08 37.17 4.00
355 356 6.813152 GCATCTACAATATTTTGCAAAGGTGT 59.187 34.615 12.41 15.66 36.22 4.16
356 357 7.331687 GCATCTACAATATTTTGCAAAGGTGTT 59.668 33.333 12.41 7.30 36.22 3.32
357 358 9.206870 CATCTACAATATTTTGCAAAGGTGTTT 57.793 29.630 12.41 1.12 36.22 2.83
358 359 9.777297 ATCTACAATATTTTGCAAAGGTGTTTT 57.223 25.926 12.41 6.11 36.22 2.43
359 360 9.606631 TCTACAATATTTTGCAAAGGTGTTTTT 57.393 25.926 12.41 3.11 36.22 1.94
360 361 9.649024 CTACAATATTTTGCAAAGGTGTTTTTG 57.351 29.630 12.41 12.03 40.25 2.44
361 362 8.273780 ACAATATTTTGCAAAGGTGTTTTTGA 57.726 26.923 12.41 0.00 39.27 2.69
362 363 8.180920 ACAATATTTTGCAAAGGTGTTTTTGAC 58.819 29.630 12.41 0.00 39.27 3.18
363 364 5.559427 ATTTTGCAAAGGTGTTTTTGACC 57.441 34.783 12.41 0.00 39.79 4.02
364 365 3.971245 TTGCAAAGGTGTTTTTGACCT 57.029 38.095 0.00 0.00 46.36 3.85
365 366 3.518634 TGCAAAGGTGTTTTTGACCTC 57.481 42.857 2.90 0.00 43.42 3.85
366 367 2.159310 TGCAAAGGTGTTTTTGACCTCG 60.159 45.455 2.90 0.00 43.42 4.63
367 368 2.798145 GCAAAGGTGTTTTTGACCTCGG 60.798 50.000 2.90 0.00 43.42 4.63
368 369 2.685897 CAAAGGTGTTTTTGACCTCGGA 59.314 45.455 0.00 0.00 43.42 4.55
369 370 2.256117 AGGTGTTTTTGACCTCGGAG 57.744 50.000 0.00 0.00 39.89 4.63
370 371 1.766496 AGGTGTTTTTGACCTCGGAGA 59.234 47.619 6.58 0.00 39.89 3.71
371 372 2.372172 AGGTGTTTTTGACCTCGGAGAT 59.628 45.455 6.58 0.00 39.89 2.75
372 373 2.484264 GGTGTTTTTGACCTCGGAGATG 59.516 50.000 6.58 0.00 33.89 2.90
373 374 3.139077 GTGTTTTTGACCTCGGAGATGT 58.861 45.455 6.58 0.00 38.30 3.06
374 375 4.312443 GTGTTTTTGACCTCGGAGATGTA 58.688 43.478 6.58 0.00 35.02 2.29
375 376 4.753107 GTGTTTTTGACCTCGGAGATGTAA 59.247 41.667 6.58 0.00 35.02 2.41
376 377 5.237779 GTGTTTTTGACCTCGGAGATGTAAA 59.762 40.000 6.58 0.19 35.02 2.01
377 378 5.823570 TGTTTTTGACCTCGGAGATGTAAAA 59.176 36.000 6.58 6.06 35.02 1.52
378 379 6.488683 TGTTTTTGACCTCGGAGATGTAAAAT 59.511 34.615 6.58 0.00 35.85 1.82
379 380 7.662258 TGTTTTTGACCTCGGAGATGTAAAATA 59.338 33.333 6.58 4.20 35.85 1.40
380 381 8.674607 GTTTTTGACCTCGGAGATGTAAAATAT 58.325 33.333 6.58 0.00 35.85 1.28
381 382 9.893634 TTTTTGACCTCGGAGATGTAAAATATA 57.106 29.630 6.58 0.00 35.85 0.86
382 383 9.542462 TTTTGACCTCGGAGATGTAAAATATAG 57.458 33.333 6.58 0.00 35.85 1.31
383 384 7.834881 TGACCTCGGAGATGTAAAATATAGT 57.165 36.000 6.58 0.00 35.02 2.12
384 385 8.246430 TGACCTCGGAGATGTAAAATATAGTT 57.754 34.615 6.58 0.00 35.02 2.24
385 386 8.141909 TGACCTCGGAGATGTAAAATATAGTTG 58.858 37.037 6.58 0.00 35.02 3.16
386 387 8.019656 ACCTCGGAGATGTAAAATATAGTTGT 57.980 34.615 6.58 0.00 32.56 3.32
387 388 8.483758 ACCTCGGAGATGTAAAATATAGTTGTT 58.516 33.333 6.58 0.00 32.56 2.83
388 389 9.326413 CCTCGGAGATGTAAAATATAGTTGTTT 57.674 33.333 6.58 0.00 33.89 2.83
403 404 5.789643 AGTTGTTTTTGCATCTACATGGT 57.210 34.783 0.00 0.00 0.00 3.55
404 405 6.892658 AGTTGTTTTTGCATCTACATGGTA 57.107 33.333 0.00 0.00 0.00 3.25
405 406 7.283625 AGTTGTTTTTGCATCTACATGGTAA 57.716 32.000 0.00 0.00 0.00 2.85
406 407 7.895759 AGTTGTTTTTGCATCTACATGGTAAT 58.104 30.769 0.00 0.00 0.00 1.89
407 408 9.019656 AGTTGTTTTTGCATCTACATGGTAATA 57.980 29.630 0.00 0.00 0.00 0.98
408 409 9.289303 GTTGTTTTTGCATCTACATGGTAATAG 57.711 33.333 0.00 0.00 0.00 1.73
409 410 7.479980 TGTTTTTGCATCTACATGGTAATAGC 58.520 34.615 0.00 0.00 0.00 2.97
410 411 7.339212 TGTTTTTGCATCTACATGGTAATAGCT 59.661 33.333 0.00 0.00 0.00 3.32
411 412 7.880160 TTTTGCATCTACATGGTAATAGCTT 57.120 32.000 0.00 0.00 0.00 3.74
412 413 7.880160 TTTGCATCTACATGGTAATAGCTTT 57.120 32.000 0.00 0.00 0.00 3.51
413 414 7.496529 TTGCATCTACATGGTAATAGCTTTC 57.503 36.000 0.00 0.00 0.00 2.62
414 415 5.696270 TGCATCTACATGGTAATAGCTTTCG 59.304 40.000 0.00 0.00 0.00 3.46
415 416 5.389935 GCATCTACATGGTAATAGCTTTCGC 60.390 44.000 0.00 0.00 0.00 4.70
427 428 3.477899 AGCTTTCGCTGCATAGAAAAC 57.522 42.857 14.81 11.63 46.86 2.43
428 429 2.162408 AGCTTTCGCTGCATAGAAAACC 59.838 45.455 14.81 10.26 46.86 3.27
429 430 2.162408 GCTTTCGCTGCATAGAAAACCT 59.838 45.455 14.81 0.00 36.14 3.50
430 431 3.729163 GCTTTCGCTGCATAGAAAACCTC 60.729 47.826 14.81 4.80 36.14 3.85
431 432 2.024176 TCGCTGCATAGAAAACCTCC 57.976 50.000 0.00 0.00 0.00 4.30
432 433 0.652592 CGCTGCATAGAAAACCTCCG 59.347 55.000 0.00 0.00 0.00 4.63
433 434 1.017387 GCTGCATAGAAAACCTCCGG 58.983 55.000 0.00 0.00 0.00 5.14
434 435 1.406887 GCTGCATAGAAAACCTCCGGA 60.407 52.381 2.93 2.93 0.00 5.14
435 436 2.555199 CTGCATAGAAAACCTCCGGAG 58.445 52.381 25.36 25.36 0.00 4.63
436 437 1.300481 GCATAGAAAACCTCCGGAGC 58.700 55.000 26.87 11.98 0.00 4.70
437 438 1.406887 GCATAGAAAACCTCCGGAGCA 60.407 52.381 26.87 4.49 0.00 4.26
438 439 2.555199 CATAGAAAACCTCCGGAGCAG 58.445 52.381 26.87 15.92 0.00 4.24
439 440 1.933021 TAGAAAACCTCCGGAGCAGA 58.067 50.000 26.87 3.22 0.00 4.26
440 441 0.610687 AGAAAACCTCCGGAGCAGAG 59.389 55.000 26.87 14.76 0.00 3.35
441 442 0.321996 GAAAACCTCCGGAGCAGAGT 59.678 55.000 26.87 15.47 0.00 3.24
442 443 0.765510 AAAACCTCCGGAGCAGAGTT 59.234 50.000 26.87 20.42 0.00 3.01
443 444 0.765510 AAACCTCCGGAGCAGAGTTT 59.234 50.000 26.87 24.58 0.00 2.66
444 445 0.765510 AACCTCCGGAGCAGAGTTTT 59.234 50.000 26.87 6.50 0.00 2.43
445 446 0.321996 ACCTCCGGAGCAGAGTTTTC 59.678 55.000 26.87 0.00 0.00 2.29
446 447 0.391793 CCTCCGGAGCAGAGTTTTCC 60.392 60.000 26.87 0.00 0.00 3.13
447 448 0.610687 CTCCGGAGCAGAGTTTTCCT 59.389 55.000 20.67 0.00 0.00 3.36
448 449 1.002544 CTCCGGAGCAGAGTTTTCCTT 59.997 52.381 20.67 0.00 0.00 3.36
449 450 1.420138 TCCGGAGCAGAGTTTTCCTTT 59.580 47.619 0.00 0.00 0.00 3.11
450 451 1.807142 CCGGAGCAGAGTTTTCCTTTC 59.193 52.381 0.00 0.00 0.00 2.62
451 452 2.551071 CCGGAGCAGAGTTTTCCTTTCT 60.551 50.000 0.00 0.00 0.00 2.52
452 453 3.142174 CGGAGCAGAGTTTTCCTTTCTT 58.858 45.455 0.00 0.00 0.00 2.52
453 454 3.565902 CGGAGCAGAGTTTTCCTTTCTTT 59.434 43.478 0.00 0.00 0.00 2.52
454 455 4.555511 CGGAGCAGAGTTTTCCTTTCTTTG 60.556 45.833 0.00 0.00 0.00 2.77
455 456 4.580580 GGAGCAGAGTTTTCCTTTCTTTGA 59.419 41.667 0.00 0.00 0.00 2.69
456 457 5.067805 GGAGCAGAGTTTTCCTTTCTTTGAA 59.932 40.000 0.00 0.00 0.00 2.69
457 458 6.405842 GGAGCAGAGTTTTCCTTTCTTTGAAA 60.406 38.462 0.00 0.00 0.00 2.69
458 459 6.333416 AGCAGAGTTTTCCTTTCTTTGAAAC 58.667 36.000 0.00 0.00 30.64 2.78
459 460 6.071391 AGCAGAGTTTTCCTTTCTTTGAAACA 60.071 34.615 0.00 0.00 30.64 2.83
460 461 6.589907 GCAGAGTTTTCCTTTCTTTGAAACAA 59.410 34.615 0.00 0.00 30.64 2.83
461 462 7.411912 GCAGAGTTTTCCTTTCTTTGAAACAAC 60.412 37.037 0.00 0.00 30.64 3.32
462 463 7.063426 CAGAGTTTTCCTTTCTTTGAAACAACC 59.937 37.037 0.00 0.00 30.64 3.77
463 464 7.004555 AGTTTTCCTTTCTTTGAAACAACCT 57.995 32.000 0.00 0.00 30.64 3.50
464 465 6.873605 AGTTTTCCTTTCTTTGAAACAACCTG 59.126 34.615 0.00 0.00 30.64 4.00
465 466 5.993748 TTCCTTTCTTTGAAACAACCTGT 57.006 34.783 0.00 0.00 0.00 4.00
466 467 5.576447 TCCTTTCTTTGAAACAACCTGTC 57.424 39.130 0.00 0.00 0.00 3.51
467 468 5.013547 TCCTTTCTTTGAAACAACCTGTCA 58.986 37.500 0.00 0.00 0.00 3.58
468 469 5.656416 TCCTTTCTTTGAAACAACCTGTCAT 59.344 36.000 0.00 0.00 0.00 3.06
469 470 6.154363 TCCTTTCTTTGAAACAACCTGTCATT 59.846 34.615 0.00 0.00 0.00 2.57
470 471 6.476706 CCTTTCTTTGAAACAACCTGTCATTC 59.523 38.462 0.00 0.00 0.00 2.67
471 472 5.514274 TCTTTGAAACAACCTGTCATTCC 57.486 39.130 0.00 0.00 0.00 3.01
472 473 5.200483 TCTTTGAAACAACCTGTCATTCCT 58.800 37.500 0.00 0.00 0.00 3.36
473 474 4.916983 TTGAAACAACCTGTCATTCCTG 57.083 40.909 0.00 0.00 0.00 3.86
474 475 3.221771 TGAAACAACCTGTCATTCCTGG 58.778 45.455 0.00 0.00 0.00 4.45
475 476 3.117701 TGAAACAACCTGTCATTCCTGGA 60.118 43.478 0.00 0.00 0.00 3.86
476 477 3.814504 AACAACCTGTCATTCCTGGAT 57.185 42.857 0.00 0.00 0.00 3.41
477 478 3.814504 ACAACCTGTCATTCCTGGATT 57.185 42.857 0.00 0.00 0.00 3.01
478 479 4.118168 ACAACCTGTCATTCCTGGATTT 57.882 40.909 0.00 0.00 0.00 2.17
479 480 4.082125 ACAACCTGTCATTCCTGGATTTC 58.918 43.478 0.00 0.00 0.00 2.17
480 481 3.372440 ACCTGTCATTCCTGGATTTCC 57.628 47.619 0.00 0.00 0.00 3.13
481 482 2.649312 ACCTGTCATTCCTGGATTTCCA 59.351 45.455 0.00 0.00 45.30 3.53
482 483 3.075882 ACCTGTCATTCCTGGATTTCCAA 59.924 43.478 0.00 0.00 46.97 3.53
483 484 4.088634 CCTGTCATTCCTGGATTTCCAAA 58.911 43.478 0.00 0.00 46.97 3.28
484 485 4.713321 CCTGTCATTCCTGGATTTCCAAAT 59.287 41.667 0.00 0.00 46.97 2.32
485 486 5.893255 CCTGTCATTCCTGGATTTCCAAATA 59.107 40.000 0.00 0.00 46.97 1.40
486 487 6.183360 CCTGTCATTCCTGGATTTCCAAATAC 60.183 42.308 0.00 0.78 46.97 1.89
487 488 6.252233 TGTCATTCCTGGATTTCCAAATACA 58.748 36.000 0.00 0.00 46.97 2.29
488 489 6.152661 TGTCATTCCTGGATTTCCAAATACAC 59.847 38.462 0.00 1.12 46.97 2.90
489 490 5.656416 TCATTCCTGGATTTCCAAATACACC 59.344 40.000 0.00 0.00 46.97 4.16
490 491 4.666412 TCCTGGATTTCCAAATACACCA 57.334 40.909 0.18 0.00 46.97 4.17
491 492 4.340617 TCCTGGATTTCCAAATACACCAC 58.659 43.478 0.18 0.00 46.97 4.16
492 493 4.085733 CCTGGATTTCCAAATACACCACA 58.914 43.478 0.18 0.00 46.97 4.17
493 494 4.526262 CCTGGATTTCCAAATACACCACAA 59.474 41.667 0.18 0.00 46.97 3.33
494 495 5.461032 TGGATTTCCAAATACACCACAAC 57.539 39.130 0.00 0.00 44.35 3.32
495 496 4.895889 TGGATTTCCAAATACACCACAACA 59.104 37.500 0.00 0.00 44.35 3.33
496 497 5.363868 TGGATTTCCAAATACACCACAACAA 59.636 36.000 0.00 0.00 44.35 2.83
497 498 5.694458 GGATTTCCAAATACACCACAACAAC 59.306 40.000 0.00 0.00 35.64 3.32
498 499 4.657436 TTCCAAATACACCACAACAACC 57.343 40.909 0.00 0.00 0.00 3.77
499 500 2.619177 TCCAAATACACCACAACAACCG 59.381 45.455 0.00 0.00 0.00 4.44
500 501 2.359531 CCAAATACACCACAACAACCGT 59.640 45.455 0.00 0.00 0.00 4.83
543 545 2.930040 CGTCATATGGCCGGAATATGTC 59.070 50.000 25.21 21.18 38.56 3.06
575 577 4.619437 TTTGTTACGTCGCTTTTTCCTT 57.381 36.364 0.00 0.00 0.00 3.36
588 590 4.202212 GCTTTTTCCTTGCCAAAAGTAGGA 60.202 41.667 6.32 0.00 40.63 2.94
606 608 2.671619 TGGGCTACCAGCAAACGC 60.672 61.111 0.00 0.00 44.75 4.84
626 628 0.101219 CAGCGCCTAAATTTCCCTGC 59.899 55.000 2.29 0.00 0.00 4.85
795 797 1.398390 GTGCCCATTTAGCTCTTCACG 59.602 52.381 0.00 0.00 0.00 4.35
966 982 4.201980 ACTCGACGAACCGATTAATCATCA 60.202 41.667 15.57 0.00 37.96 3.07
991 1007 2.102438 ACGATCACGACCTCGCGTA 61.102 57.895 5.77 0.00 43.59 4.42
1017 1033 2.501128 ATGGCGGTCATGGACGAG 59.499 61.111 12.95 1.17 34.22 4.18
1222 1247 2.434185 GCATTCCCGCACTCGACA 60.434 61.111 0.00 0.00 38.10 4.35
1425 1450 2.167219 ATCGATGTTCCGCACGCAG 61.167 57.895 0.00 0.00 0.00 5.18
1521 1546 1.969589 CGGCCCGCTTTACCTTGTT 60.970 57.895 0.00 0.00 0.00 2.83
1540 1565 0.251354 TGGCGACCTCTACTACGACT 59.749 55.000 0.00 0.00 34.69 4.18
1541 1566 0.936600 GGCGACCTCTACTACGACTC 59.063 60.000 0.00 0.00 0.00 3.36
1675 1700 2.056577 GCACAAGCATGAACAAGAAGC 58.943 47.619 0.00 0.00 41.58 3.86
1689 1714 3.591254 GAAGCCCGTCAGGTTCGCT 62.591 63.158 0.00 0.00 38.26 4.93
1741 1766 4.096003 CACCCGTCTTCCCGGCAT 62.096 66.667 0.00 0.00 46.71 4.40
1745 1770 2.514592 CGTCTTCCCGGCATGCAT 60.515 61.111 21.36 0.00 0.00 3.96
1746 1771 2.537560 CGTCTTCCCGGCATGCATC 61.538 63.158 21.36 1.35 0.00 3.91
1781 1806 2.957052 ATTACGTGCGCGCGGTTTT 61.957 52.632 41.57 26.04 42.83 2.43
1790 1815 0.440758 CGCGCGGTTTTTCTGTATCA 59.559 50.000 24.84 0.00 0.00 2.15
1791 1816 1.785518 CGCGCGGTTTTTCTGTATCAC 60.786 52.381 24.84 0.00 0.00 3.06
1794 1819 3.669557 GCGCGGTTTTTCTGTATCACATT 60.670 43.478 8.83 0.00 0.00 2.71
1795 1820 4.436317 GCGCGGTTTTTCTGTATCACATTA 60.436 41.667 8.83 0.00 0.00 1.90
1796 1821 5.255596 CGCGGTTTTTCTGTATCACATTAG 58.744 41.667 0.00 0.00 0.00 1.73
1797 1822 5.163893 CGCGGTTTTTCTGTATCACATTAGT 60.164 40.000 0.00 0.00 0.00 2.24
1798 1823 6.035220 CGCGGTTTTTCTGTATCACATTAGTA 59.965 38.462 0.00 0.00 0.00 1.82
1799 1824 7.178074 GCGGTTTTTCTGTATCACATTAGTAC 58.822 38.462 0.00 0.00 0.00 2.73
1800 1825 7.064253 GCGGTTTTTCTGTATCACATTAGTACT 59.936 37.037 0.00 0.00 0.00 2.73
1801 1826 8.592998 CGGTTTTTCTGTATCACATTAGTACTC 58.407 37.037 0.00 0.00 0.00 2.59
1802 1827 8.880750 GGTTTTTCTGTATCACATTAGTACTCC 58.119 37.037 0.00 0.00 0.00 3.85
1803 1828 8.880750 GTTTTTCTGTATCACATTAGTACTCCC 58.119 37.037 0.00 0.00 0.00 4.30
1804 1829 7.973048 TTTCTGTATCACATTAGTACTCCCT 57.027 36.000 0.00 0.00 0.00 4.20
1805 1830 7.584122 TTCTGTATCACATTAGTACTCCCTC 57.416 40.000 0.00 0.00 0.00 4.30
1806 1831 6.912426 TCTGTATCACATTAGTACTCCCTCT 58.088 40.000 0.00 0.00 0.00 3.69
1807 1832 8.042286 TCTGTATCACATTAGTACTCCCTCTA 57.958 38.462 0.00 0.00 0.00 2.43
1808 1833 8.670490 TCTGTATCACATTAGTACTCCCTCTAT 58.330 37.037 0.00 0.00 0.00 1.98
1809 1834 9.961264 CTGTATCACATTAGTACTCCCTCTATA 57.039 37.037 0.00 0.00 0.00 1.31
1813 1838 9.884814 ATCACATTAGTACTCCCTCTATAAACT 57.115 33.333 0.00 0.00 0.00 2.66
1879 1904 9.680315 CGTTCTTATATTAGTTTACAGAGGGAG 57.320 37.037 0.00 0.00 0.00 4.30
1904 1929 3.069586 CCTGCTAATTATGTCCCTCGTCA 59.930 47.826 0.00 0.00 0.00 4.35
1909 1934 4.608948 AATTATGTCCCTCGTCATCCTC 57.391 45.455 0.00 0.00 0.00 3.71
1915 1940 0.684479 CCCTCGTCATCCTCACCTGA 60.684 60.000 0.00 0.00 0.00 3.86
1964 1989 1.878522 CGCGTTGGAGGATTCGGAG 60.879 63.158 0.00 0.00 0.00 4.63
2114 2139 4.766891 AGTTTGGACATGTCGAATCCATTT 59.233 37.500 21.85 5.07 42.09 2.32
2142 2167 0.798776 GTTGTTGATCGGCTGTGGAG 59.201 55.000 0.00 0.00 0.00 3.86
2143 2168 0.321564 TTGTTGATCGGCTGTGGAGG 60.322 55.000 0.00 0.00 0.00 4.30
2166 2191 2.421388 GGTGCACATAGATTGGTAGGCA 60.421 50.000 20.43 0.00 0.00 4.75
2292 3232 8.863872 ACTTTTGCCAGAATAGTATACACTTT 57.136 30.769 5.50 0.00 36.14 2.66
2313 3253 0.918799 TAATTGGGCCTGGCTGAGGA 60.919 55.000 19.68 0.99 46.33 3.71
2316 3256 2.044551 GGGCCTGGCTGAGGAAAG 60.045 66.667 19.68 0.00 46.33 2.62
2325 3265 2.147150 GGCTGAGGAAAGACAGACAAC 58.853 52.381 0.00 0.00 41.31 3.32
2362 3302 3.860641 TCTGCATCTAGTTTGATTGCGA 58.139 40.909 0.00 0.00 0.00 5.10
2377 3317 1.403814 TGCGAGCATACCTTCTAGCT 58.596 50.000 0.00 0.00 40.60 3.32
2408 3348 2.601266 CGTAACGAAAGGTGGCTTGTTG 60.601 50.000 0.00 0.00 0.00 3.33
2425 3365 2.028925 GGGTTGGCCGCTTGTTTG 59.971 61.111 0.00 0.00 34.97 2.93
2480 3424 2.450609 AACGCCTGTTGTCTCGTAAT 57.549 45.000 0.00 0.00 36.81 1.89
2486 3430 4.084013 CGCCTGTTGTCTCGTAATCTTTTT 60.084 41.667 0.00 0.00 0.00 1.94
2501 3445 4.801330 TCTTTTTAGCGAGGTGATGAGA 57.199 40.909 0.00 0.00 0.00 3.27
2514 3458 4.045104 GGTGATGAGATTACTAGCACACG 58.955 47.826 0.00 0.00 0.00 4.49
2515 3459 3.487574 GTGATGAGATTACTAGCACACGC 59.512 47.826 0.00 0.00 38.99 5.34
2525 3475 2.259618 CTAGCACACGCGTAGAACAAT 58.740 47.619 13.44 0.00 45.49 2.71
2535 3486 3.370978 CGCGTAGAACAATCCAAAGACAT 59.629 43.478 0.00 0.00 0.00 3.06
2565 3516 6.578023 AGATAGCAAGGAGTAAGCAGTTTAG 58.422 40.000 0.00 0.00 0.00 1.85
2650 3606 8.709386 TTAAACATAGCAGTTTTCAAGCAAAA 57.291 26.923 7.16 0.00 41.58 2.44
2670 3626 8.129840 AGCAAAATAGTACGATATAGCCGATAG 58.870 37.037 4.59 0.00 0.00 2.08
2676 3632 9.829507 ATAGTACGATATAGCCGATAGTAAACT 57.170 33.333 4.59 0.00 0.00 2.66
2690 3646 2.561419 AGTAAACTAGCTGGAGCAACGA 59.439 45.455 3.17 0.00 45.16 3.85
2695 3651 1.474478 CTAGCTGGAGCAACGAAGAGA 59.526 52.381 0.00 0.00 45.16 3.10
2722 3678 1.671054 ACATTCACGGCGAAGGTGG 60.671 57.895 16.62 0.30 46.43 4.61
2826 3794 4.466370 TCACCATATACCCGATCTTGATCC 59.534 45.833 5.18 0.00 0.00 3.36
2831 3799 0.034059 ACCCGATCTTGATCCGATGC 59.966 55.000 5.18 0.00 0.00 3.91
2922 3891 2.029844 GAGCAGCTGGTGTTCGTCC 61.030 63.158 25.60 2.56 0.00 4.79
2936 3905 1.328279 TCGTCCTGAGCTTGAACTCA 58.672 50.000 0.00 0.00 44.32 3.41
2945 3914 0.880278 GCTTGAACTCAGTCGGCACA 60.880 55.000 0.00 0.00 0.00 4.57
2946 3915 1.581934 CTTGAACTCAGTCGGCACAA 58.418 50.000 0.00 0.00 0.00 3.33
2973 3942 2.609747 AGTGCTTGGTGAAGTCTAGGA 58.390 47.619 0.00 0.00 0.00 2.94
3062 4035 1.610554 GGTAGTGCCCGTAGCTCCAA 61.611 60.000 0.00 0.00 44.23 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.435164 TCTAATAGGTAAAACCCTACGTCCT 58.565 40.000 0.00 0.00 39.86 3.85
1 2 6.547510 TCTCTAATAGGTAAAACCCTACGTCC 59.452 42.308 0.00 0.00 39.86 4.79
2 3 7.255416 CCTCTCTAATAGGTAAAACCCTACGTC 60.255 44.444 0.00 0.00 39.86 4.34
3 4 6.548993 CCTCTCTAATAGGTAAAACCCTACGT 59.451 42.308 0.00 0.00 39.86 3.57
4 5 6.015603 CCCTCTCTAATAGGTAAAACCCTACG 60.016 46.154 0.00 0.00 39.86 3.51
5 6 6.239543 GCCCTCTCTAATAGGTAAAACCCTAC 60.240 46.154 0.00 0.00 39.86 3.18
6 7 5.842874 GCCCTCTCTAATAGGTAAAACCCTA 59.157 44.000 0.00 0.00 39.75 3.53
7 8 4.659368 GCCCTCTCTAATAGGTAAAACCCT 59.341 45.833 0.00 0.00 39.75 4.34
8 9 4.202440 GGCCCTCTCTAATAGGTAAAACCC 60.202 50.000 0.00 0.00 39.75 4.11
9 10 4.202440 GGGCCCTCTCTAATAGGTAAAACC 60.202 50.000 17.04 0.00 38.99 3.27
10 11 4.202440 GGGGCCCTCTCTAATAGGTAAAAC 60.202 50.000 24.38 0.00 31.70 2.43
11 12 3.978672 GGGGCCCTCTCTAATAGGTAAAA 59.021 47.826 24.38 0.00 31.70 1.52
12 13 3.050876 TGGGGCCCTCTCTAATAGGTAAA 60.051 47.826 25.93 0.00 31.70 2.01
13 14 2.525310 TGGGGCCCTCTCTAATAGGTAA 59.475 50.000 25.93 0.00 31.70 2.85
14 15 2.158154 TGGGGCCCTCTCTAATAGGTA 58.842 52.381 25.93 0.00 31.70 3.08
15 16 0.949582 TGGGGCCCTCTCTAATAGGT 59.050 55.000 25.93 0.00 31.70 3.08
16 17 1.700186 GTTGGGGCCCTCTCTAATAGG 59.300 57.143 25.93 0.00 0.00 2.57
17 18 1.700186 GGTTGGGGCCCTCTCTAATAG 59.300 57.143 25.93 0.00 0.00 1.73
18 19 1.297141 AGGTTGGGGCCCTCTCTAATA 59.703 52.381 25.93 0.00 0.00 0.98
19 20 0.046397 AGGTTGGGGCCCTCTCTAAT 59.954 55.000 25.93 0.00 0.00 1.73
20 21 0.720232 TAGGTTGGGGCCCTCTCTAA 59.280 55.000 25.93 6.08 33.35 2.10
21 22 0.264955 CTAGGTTGGGGCCCTCTCTA 59.735 60.000 25.93 19.17 33.35 2.43
22 23 1.003573 CTAGGTTGGGGCCCTCTCT 59.996 63.158 25.93 19.08 33.35 3.10
23 24 2.073101 CCTAGGTTGGGGCCCTCTC 61.073 68.421 25.93 13.53 33.35 3.20
24 25 1.533808 TACCTAGGTTGGGGCCCTCT 61.534 60.000 25.93 19.78 33.35 3.69
25 26 0.622446 TTACCTAGGTTGGGGCCCTC 60.622 60.000 25.93 16.53 33.35 4.30
26 27 0.178825 TTTACCTAGGTTGGGGCCCT 60.179 55.000 25.93 5.55 36.04 5.19
27 28 0.033796 GTTTACCTAGGTTGGGGCCC 60.034 60.000 22.11 18.17 0.00 5.80
28 29 0.699981 TGTTTACCTAGGTTGGGGCC 59.300 55.000 22.11 0.00 0.00 5.80
29 30 1.615116 GGTGTTTACCTAGGTTGGGGC 60.615 57.143 22.11 8.24 43.97 5.80
30 31 1.339342 CGGTGTTTACCTAGGTTGGGG 60.339 57.143 22.11 0.00 45.22 4.96
31 32 1.348696 ACGGTGTTTACCTAGGTTGGG 59.651 52.381 22.11 5.57 45.22 4.12
32 33 2.224354 ACACGGTGTTTACCTAGGTTGG 60.224 50.000 22.11 4.50 45.22 3.77
33 34 3.062042 GACACGGTGTTTACCTAGGTTG 58.938 50.000 22.11 12.05 45.22 3.77
34 35 2.037641 GGACACGGTGTTTACCTAGGTT 59.962 50.000 22.11 4.29 45.22 3.50
35 36 1.620323 GGACACGGTGTTTACCTAGGT 59.380 52.381 20.57 20.57 45.22 3.08
36 37 1.897802 AGGACACGGTGTTTACCTAGG 59.102 52.381 15.94 7.41 45.22 3.02
37 38 3.582780 GAAGGACACGGTGTTTACCTAG 58.417 50.000 15.94 0.00 45.22 3.02
38 39 2.030007 CGAAGGACACGGTGTTTACCTA 60.030 50.000 15.94 0.00 45.22 3.08
39 40 1.269936 CGAAGGACACGGTGTTTACCT 60.270 52.381 15.94 14.13 45.22 3.08
40 41 1.142474 CGAAGGACACGGTGTTTACC 58.858 55.000 15.94 12.00 43.89 2.85
41 42 1.523934 CACGAAGGACACGGTGTTTAC 59.476 52.381 15.94 9.08 34.93 2.01
42 43 1.855513 CACGAAGGACACGGTGTTTA 58.144 50.000 15.94 0.00 34.93 2.01
43 44 1.433837 GCACGAAGGACACGGTGTTT 61.434 55.000 15.94 6.57 34.93 2.83
44 45 1.885850 GCACGAAGGACACGGTGTT 60.886 57.895 15.94 0.00 34.93 3.32
45 46 2.279918 GCACGAAGGACACGGTGT 60.280 61.111 14.66 14.66 34.93 4.16
46 47 2.989055 AAGGCACGAAGGACACGGTG 62.989 60.000 6.58 6.58 34.93 4.94
47 48 2.319890 AAAGGCACGAAGGACACGGT 62.320 55.000 0.00 0.00 34.93 4.83
48 49 1.597027 AAAGGCACGAAGGACACGG 60.597 57.895 0.00 0.00 34.93 4.94
49 50 1.157870 ACAAAGGCACGAAGGACACG 61.158 55.000 0.00 0.00 0.00 4.49
50 51 1.021968 AACAAAGGCACGAAGGACAC 58.978 50.000 0.00 0.00 0.00 3.67
51 52 1.673920 GAAACAAAGGCACGAAGGACA 59.326 47.619 0.00 0.00 0.00 4.02
52 53 1.001706 GGAAACAAAGGCACGAAGGAC 60.002 52.381 0.00 0.00 0.00 3.85
53 54 1.314730 GGAAACAAAGGCACGAAGGA 58.685 50.000 0.00 0.00 0.00 3.36
54 55 0.313987 GGGAAACAAAGGCACGAAGG 59.686 55.000 0.00 0.00 0.00 3.46
55 56 1.028905 TGGGAAACAAAGGCACGAAG 58.971 50.000 0.00 0.00 0.00 3.79
56 57 1.698506 ATGGGAAACAAAGGCACGAA 58.301 45.000 0.00 0.00 0.00 3.85
57 58 1.339610 CAATGGGAAACAAAGGCACGA 59.660 47.619 0.00 0.00 0.00 4.35
58 59 1.339610 TCAATGGGAAACAAAGGCACG 59.660 47.619 0.00 0.00 0.00 5.34
59 60 3.588955 GATCAATGGGAAACAAAGGCAC 58.411 45.455 0.00 0.00 0.00 5.01
60 61 2.566724 GGATCAATGGGAAACAAAGGCA 59.433 45.455 0.00 0.00 0.00 4.75
61 62 2.566724 TGGATCAATGGGAAACAAAGGC 59.433 45.455 0.00 0.00 0.00 4.35
62 63 4.527816 TCTTGGATCAATGGGAAACAAAGG 59.472 41.667 0.00 0.00 0.00 3.11
63 64 5.726980 TCTTGGATCAATGGGAAACAAAG 57.273 39.130 0.00 0.00 0.00 2.77
64 65 5.187576 GGATCTTGGATCAATGGGAAACAAA 59.812 40.000 9.33 0.00 0.00 2.83
65 66 4.711355 GGATCTTGGATCAATGGGAAACAA 59.289 41.667 9.33 0.00 0.00 2.83
66 67 4.264307 TGGATCTTGGATCAATGGGAAACA 60.264 41.667 9.33 0.00 0.00 2.83
67 68 4.098501 GTGGATCTTGGATCAATGGGAAAC 59.901 45.833 9.33 0.00 0.00 2.78
68 69 4.264307 TGTGGATCTTGGATCAATGGGAAA 60.264 41.667 9.33 0.00 0.00 3.13
69 70 3.269118 TGTGGATCTTGGATCAATGGGAA 59.731 43.478 9.33 0.00 0.00 3.97
70 71 2.851821 TGTGGATCTTGGATCAATGGGA 59.148 45.455 9.33 0.00 0.00 4.37
71 72 3.301794 TGTGGATCTTGGATCAATGGG 57.698 47.619 9.33 0.00 0.00 4.00
72 73 4.275810 AGTTGTGGATCTTGGATCAATGG 58.724 43.478 9.33 0.00 0.00 3.16
73 74 4.034858 CGAGTTGTGGATCTTGGATCAATG 59.965 45.833 9.33 0.00 0.00 2.82
74 75 4.194640 CGAGTTGTGGATCTTGGATCAAT 58.805 43.478 9.33 0.00 0.00 2.57
75 76 3.599343 CGAGTTGTGGATCTTGGATCAA 58.401 45.455 9.33 0.00 0.00 2.57
76 77 2.093500 CCGAGTTGTGGATCTTGGATCA 60.093 50.000 9.33 0.00 37.40 2.92
77 78 2.555199 CCGAGTTGTGGATCTTGGATC 58.445 52.381 0.00 0.00 37.40 3.36
78 79 1.210478 CCCGAGTTGTGGATCTTGGAT 59.790 52.381 0.00 0.00 37.40 3.41
79 80 0.613260 CCCGAGTTGTGGATCTTGGA 59.387 55.000 0.00 0.00 37.40 3.53
80 81 1.026718 GCCCGAGTTGTGGATCTTGG 61.027 60.000 0.00 0.00 35.57 3.61
81 82 1.026718 GGCCCGAGTTGTGGATCTTG 61.027 60.000 0.00 0.00 0.00 3.02
82 83 1.299976 GGCCCGAGTTGTGGATCTT 59.700 57.895 0.00 0.00 0.00 2.40
83 84 2.670148 GGGCCCGAGTTGTGGATCT 61.670 63.158 5.69 0.00 0.00 2.75
84 85 2.124695 GGGCCCGAGTTGTGGATC 60.125 66.667 5.69 0.00 0.00 3.36
85 86 3.728373 GGGGCCCGAGTTGTGGAT 61.728 66.667 17.79 0.00 0.00 3.41
100 101 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
101 102 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
102 103 2.203509 AGCGGATCTCGGGTAGGG 60.204 66.667 5.87 0.00 39.69 3.53
103 104 2.565645 CCAGCGGATCTCGGGTAGG 61.566 68.421 5.87 0.00 39.69 3.18
104 105 1.392710 AACCAGCGGATCTCGGGTAG 61.393 60.000 9.72 0.00 39.69 3.18
105 106 0.974010 AAACCAGCGGATCTCGGGTA 60.974 55.000 9.72 0.00 39.69 3.69
106 107 1.838073 AAAACCAGCGGATCTCGGGT 61.838 55.000 1.50 5.41 39.69 5.28
107 108 1.078426 AAAACCAGCGGATCTCGGG 60.078 57.895 1.50 4.86 39.69 5.14
108 109 0.391130 TCAAAACCAGCGGATCTCGG 60.391 55.000 1.50 0.00 39.69 4.63
109 110 0.721718 GTCAAAACCAGCGGATCTCG 59.278 55.000 1.50 0.00 42.76 4.04
110 111 1.464997 GTGTCAAAACCAGCGGATCTC 59.535 52.381 1.50 0.00 0.00 2.75
111 112 1.523758 GTGTCAAAACCAGCGGATCT 58.476 50.000 1.50 0.00 0.00 2.75
112 113 0.521735 GGTGTCAAAACCAGCGGATC 59.478 55.000 1.50 0.00 40.22 3.36
113 114 1.234615 CGGTGTCAAAACCAGCGGAT 61.235 55.000 4.26 0.00 46.71 4.18
114 115 1.890041 CGGTGTCAAAACCAGCGGA 60.890 57.895 4.26 0.00 46.71 5.54
115 116 2.637025 CGGTGTCAAAACCAGCGG 59.363 61.111 4.26 0.00 46.71 5.52
117 118 0.736053 TTGTCGGTGTCAAAACCAGC 59.264 50.000 0.00 0.00 40.53 4.85
118 119 2.878406 AGATTGTCGGTGTCAAAACCAG 59.122 45.455 0.00 0.00 40.53 4.00
119 120 2.616376 CAGATTGTCGGTGTCAAAACCA 59.384 45.455 0.00 0.00 40.53 3.67
120 121 2.031157 CCAGATTGTCGGTGTCAAAACC 60.031 50.000 0.00 0.00 36.82 3.27
121 122 2.031157 CCCAGATTGTCGGTGTCAAAAC 60.031 50.000 0.00 0.00 0.00 2.43
122 123 2.158740 TCCCAGATTGTCGGTGTCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
123 124 1.418264 TCCCAGATTGTCGGTGTCAAA 59.582 47.619 0.00 0.00 0.00 2.69
124 125 1.052617 TCCCAGATTGTCGGTGTCAA 58.947 50.000 0.00 0.00 0.00 3.18
125 126 1.066215 CATCCCAGATTGTCGGTGTCA 60.066 52.381 0.00 0.00 0.00 3.58
126 127 1.656652 CATCCCAGATTGTCGGTGTC 58.343 55.000 0.00 0.00 0.00 3.67
127 128 0.253044 CCATCCCAGATTGTCGGTGT 59.747 55.000 0.00 0.00 0.00 4.16
128 129 0.464373 CCCATCCCAGATTGTCGGTG 60.464 60.000 0.00 0.00 0.00 4.94
129 130 1.915228 CCCATCCCAGATTGTCGGT 59.085 57.895 0.00 0.00 0.00 4.69
130 131 1.526917 GCCCATCCCAGATTGTCGG 60.527 63.158 0.00 0.00 0.00 4.79
131 132 1.526917 GGCCCATCCCAGATTGTCG 60.527 63.158 0.00 0.00 0.00 4.35
132 133 0.033208 TTGGCCCATCCCAGATTGTC 60.033 55.000 0.00 0.00 36.00 3.18
133 134 0.324645 GTTGGCCCATCCCAGATTGT 60.325 55.000 0.00 0.00 36.00 2.71
134 135 1.386525 CGTTGGCCCATCCCAGATTG 61.387 60.000 0.00 0.00 36.00 2.67
135 136 1.076777 CGTTGGCCCATCCCAGATT 60.077 57.895 0.00 0.00 36.00 2.40
136 137 2.597340 CGTTGGCCCATCCCAGAT 59.403 61.111 0.00 0.00 36.00 2.90
137 138 3.727258 CCGTTGGCCCATCCCAGA 61.727 66.667 0.00 0.00 36.00 3.86
138 139 4.820744 CCCGTTGGCCCATCCCAG 62.821 72.222 0.00 0.00 36.00 4.45
157 158 4.404654 CTGAAACTTGCCGCCGCC 62.405 66.667 0.00 0.00 0.00 6.13
158 159 4.404654 CCTGAAACTTGCCGCCGC 62.405 66.667 0.00 0.00 0.00 6.53
159 160 3.737172 CCCTGAAACTTGCCGCCG 61.737 66.667 0.00 0.00 0.00 6.46
160 161 4.056125 GCCCTGAAACTTGCCGCC 62.056 66.667 0.00 0.00 0.00 6.13
161 162 4.404654 CGCCCTGAAACTTGCCGC 62.405 66.667 0.00 0.00 0.00 6.53
162 163 1.791103 TTTCGCCCTGAAACTTGCCG 61.791 55.000 0.00 0.00 41.59 5.69
163 164 0.387565 TTTTCGCCCTGAAACTTGCC 59.612 50.000 0.00 0.00 45.98 4.52
164 165 1.487482 GTTTTCGCCCTGAAACTTGC 58.513 50.000 0.00 0.00 45.98 4.01
165 166 1.599419 CGGTTTTCGCCCTGAAACTTG 60.599 52.381 0.00 0.00 45.98 3.16
166 167 0.666374 CGGTTTTCGCCCTGAAACTT 59.334 50.000 0.00 0.00 45.98 2.66
167 168 0.464916 ACGGTTTTCGCCCTGAAACT 60.465 50.000 0.00 0.00 45.98 2.66
168 169 0.040692 GACGGTTTTCGCCCTGAAAC 60.041 55.000 0.00 0.00 45.98 2.78
169 170 0.464013 TGACGGTTTTCGCCCTGAAA 60.464 50.000 0.00 0.00 44.70 2.69
170 171 0.464013 TTGACGGTTTTCGCCCTGAA 60.464 50.000 0.00 0.00 43.89 3.02
171 172 1.146485 TTGACGGTTTTCGCCCTGA 59.854 52.632 0.00 0.00 43.89 3.86
172 173 1.281656 GTTGACGGTTTTCGCCCTG 59.718 57.895 0.00 0.00 43.89 4.45
173 174 2.248835 CGTTGACGGTTTTCGCCCT 61.249 57.895 0.00 0.00 43.89 5.19
174 175 2.250190 CGTTGACGGTTTTCGCCC 59.750 61.111 0.00 0.00 43.89 6.13
184 185 3.851845 TTCACTCCGCCCGTTGACG 62.852 63.158 0.00 0.00 39.44 4.35
185 186 0.953960 ATTTCACTCCGCCCGTTGAC 60.954 55.000 0.00 0.00 0.00 3.18
186 187 0.953471 CATTTCACTCCGCCCGTTGA 60.953 55.000 0.00 0.00 0.00 3.18
187 188 0.953471 TCATTTCACTCCGCCCGTTG 60.953 55.000 0.00 0.00 0.00 4.10
188 189 0.250553 TTCATTTCACTCCGCCCGTT 60.251 50.000 0.00 0.00 0.00 4.44
189 190 0.673644 CTTCATTTCACTCCGCCCGT 60.674 55.000 0.00 0.00 0.00 5.28
190 191 1.369091 CCTTCATTTCACTCCGCCCG 61.369 60.000 0.00 0.00 0.00 6.13
191 192 1.657751 GCCTTCATTTCACTCCGCCC 61.658 60.000 0.00 0.00 0.00 6.13
192 193 1.803289 GCCTTCATTTCACTCCGCC 59.197 57.895 0.00 0.00 0.00 6.13
193 194 1.425428 CGCCTTCATTTCACTCCGC 59.575 57.895 0.00 0.00 0.00 5.54
194 195 0.673644 ACCGCCTTCATTTCACTCCG 60.674 55.000 0.00 0.00 0.00 4.63
195 196 1.200020 CAACCGCCTTCATTTCACTCC 59.800 52.381 0.00 0.00 0.00 3.85
196 197 1.200020 CCAACCGCCTTCATTTCACTC 59.800 52.381 0.00 0.00 0.00 3.51
197 198 1.247567 CCAACCGCCTTCATTTCACT 58.752 50.000 0.00 0.00 0.00 3.41
198 199 0.243636 CCCAACCGCCTTCATTTCAC 59.756 55.000 0.00 0.00 0.00 3.18
199 200 1.531739 GCCCAACCGCCTTCATTTCA 61.532 55.000 0.00 0.00 0.00 2.69
200 201 1.215382 GCCCAACCGCCTTCATTTC 59.785 57.895 0.00 0.00 0.00 2.17
201 202 2.635443 CGCCCAACCGCCTTCATTT 61.635 57.895 0.00 0.00 0.00 2.32
202 203 2.837031 ATCGCCCAACCGCCTTCATT 62.837 55.000 0.00 0.00 0.00 2.57
203 204 2.837031 AATCGCCCAACCGCCTTCAT 62.837 55.000 0.00 0.00 0.00 2.57
204 205 3.561120 AATCGCCCAACCGCCTTCA 62.561 57.895 0.00 0.00 0.00 3.02
205 206 2.750237 AATCGCCCAACCGCCTTC 60.750 61.111 0.00 0.00 0.00 3.46
206 207 3.061848 CAATCGCCCAACCGCCTT 61.062 61.111 0.00 0.00 0.00 4.35
211 212 4.114997 CACGCCAATCGCCCAACC 62.115 66.667 0.00 0.00 43.23 3.77
212 213 3.361977 ACACGCCAATCGCCCAAC 61.362 61.111 0.00 0.00 43.23 3.77
213 214 3.361158 CACACGCCAATCGCCCAA 61.361 61.111 0.00 0.00 43.23 4.12
214 215 4.321966 TCACACGCCAATCGCCCA 62.322 61.111 0.00 0.00 43.23 5.36
215 216 3.499737 CTCACACGCCAATCGCCC 61.500 66.667 0.00 0.00 43.23 6.13
216 217 4.166011 GCTCACACGCCAATCGCC 62.166 66.667 0.00 0.00 43.23 5.54
217 218 4.505217 CGCTCACACGCCAATCGC 62.505 66.667 0.00 0.00 43.23 4.58
225 226 0.110823 GTAAAACTGGCGCTCACACG 60.111 55.000 7.64 0.00 0.00 4.49
226 227 0.941542 TGTAAAACTGGCGCTCACAC 59.058 50.000 7.64 0.00 0.00 3.82
227 228 1.804151 GATGTAAAACTGGCGCTCACA 59.196 47.619 7.64 0.00 0.00 3.58
228 229 2.076863 AGATGTAAAACTGGCGCTCAC 58.923 47.619 7.64 0.00 0.00 3.51
229 230 2.346803 GAGATGTAAAACTGGCGCTCA 58.653 47.619 7.64 2.39 0.00 4.26
230 231 1.666189 GGAGATGTAAAACTGGCGCTC 59.334 52.381 7.64 0.00 0.00 5.03
231 232 1.279271 AGGAGATGTAAAACTGGCGCT 59.721 47.619 7.64 0.00 0.00 5.92
232 233 1.739067 AGGAGATGTAAAACTGGCGC 58.261 50.000 0.00 0.00 0.00 6.53
233 234 3.074412 ACAAGGAGATGTAAAACTGGCG 58.926 45.455 0.00 0.00 0.00 5.69
234 235 4.636206 CCTACAAGGAGATGTAAAACTGGC 59.364 45.833 0.00 0.00 37.67 4.85
235 236 5.643777 CACCTACAAGGAGATGTAAAACTGG 59.356 44.000 0.00 0.00 37.67 4.00
236 237 5.643777 CCACCTACAAGGAGATGTAAAACTG 59.356 44.000 0.00 0.00 37.67 3.16
237 238 5.546499 TCCACCTACAAGGAGATGTAAAACT 59.454 40.000 0.00 0.00 37.67 2.66
238 239 5.801380 TCCACCTACAAGGAGATGTAAAAC 58.199 41.667 0.00 0.00 37.67 2.43
248 249 7.719633 GCAAATTTATATCTCCACCTACAAGGA 59.280 37.037 0.00 0.00 37.67 3.36
249 250 7.502226 TGCAAATTTATATCTCCACCTACAAGG 59.498 37.037 0.00 0.00 42.49 3.61
250 251 8.450578 TGCAAATTTATATCTCCACCTACAAG 57.549 34.615 0.00 0.00 0.00 3.16
251 252 8.995027 ATGCAAATTTATATCTCCACCTACAA 57.005 30.769 0.00 0.00 0.00 2.41
252 253 7.387673 CGATGCAAATTTATATCTCCACCTACA 59.612 37.037 0.00 0.00 0.00 2.74
253 254 7.624344 GCGATGCAAATTTATATCTCCACCTAC 60.624 40.741 0.00 0.00 0.00 3.18
254 255 6.371548 GCGATGCAAATTTATATCTCCACCTA 59.628 38.462 0.00 0.00 0.00 3.08
255 256 5.182001 GCGATGCAAATTTATATCTCCACCT 59.818 40.000 0.00 0.00 0.00 4.00
256 257 5.393962 GCGATGCAAATTTATATCTCCACC 58.606 41.667 0.00 0.00 0.00 4.61
257 258 5.082059 CGCGATGCAAATTTATATCTCCAC 58.918 41.667 0.00 0.91 0.00 4.02
258 259 4.994217 TCGCGATGCAAATTTATATCTCCA 59.006 37.500 3.71 0.00 0.00 3.86
259 260 5.446473 CCTCGCGATGCAAATTTATATCTCC 60.446 44.000 10.36 3.55 0.00 3.71
260 261 5.120830 ACCTCGCGATGCAAATTTATATCTC 59.879 40.000 10.36 4.11 0.00 2.75
261 262 4.997395 ACCTCGCGATGCAAATTTATATCT 59.003 37.500 10.36 0.00 0.00 1.98
262 263 5.082059 CACCTCGCGATGCAAATTTATATC 58.918 41.667 10.36 0.00 0.00 1.63
263 264 4.515191 ACACCTCGCGATGCAAATTTATAT 59.485 37.500 10.36 0.00 0.00 0.86
264 265 3.874543 ACACCTCGCGATGCAAATTTATA 59.125 39.130 10.36 0.00 0.00 0.98
265 266 2.682856 ACACCTCGCGATGCAAATTTAT 59.317 40.909 10.36 0.00 0.00 1.40
266 267 2.080693 ACACCTCGCGATGCAAATTTA 58.919 42.857 10.36 0.00 0.00 1.40
267 268 0.881118 ACACCTCGCGATGCAAATTT 59.119 45.000 10.36 0.00 0.00 1.82
268 269 0.881118 AACACCTCGCGATGCAAATT 59.119 45.000 10.36 0.00 0.00 1.82
269 270 0.168788 CAACACCTCGCGATGCAAAT 59.831 50.000 10.36 0.00 0.00 2.32
270 271 1.163420 ACAACACCTCGCGATGCAAA 61.163 50.000 10.36 0.00 0.00 3.68
271 272 0.319986 TACAACACCTCGCGATGCAA 60.320 50.000 10.36 0.00 0.00 4.08
272 273 0.108377 ATACAACACCTCGCGATGCA 60.108 50.000 10.36 0.00 0.00 3.96
273 274 1.006832 AATACAACACCTCGCGATGC 58.993 50.000 10.36 0.00 0.00 3.91
274 275 3.740044 AAAATACAACACCTCGCGATG 57.260 42.857 10.36 10.15 0.00 3.84
275 276 4.247258 TGTAAAATACAACACCTCGCGAT 58.753 39.130 10.36 0.00 35.38 4.58
276 277 3.651206 TGTAAAATACAACACCTCGCGA 58.349 40.909 9.26 9.26 35.38 5.87
277 278 4.593597 ATGTAAAATACAACACCTCGCG 57.406 40.909 0.00 0.00 42.76 5.87
278 279 6.032042 CGAAAATGTAAAATACAACACCTCGC 59.968 38.462 0.00 0.00 42.76 5.03
279 280 7.292292 TCGAAAATGTAAAATACAACACCTCG 58.708 34.615 0.00 0.99 42.76 4.63
280 281 9.453325 TTTCGAAAATGTAAAATACAACACCTC 57.547 29.630 8.44 0.00 42.76 3.85
281 282 9.458374 CTTTCGAAAATGTAAAATACAACACCT 57.542 29.630 12.41 0.00 42.76 4.00
282 283 9.453325 TCTTTCGAAAATGTAAAATACAACACC 57.547 29.630 12.41 0.00 42.76 4.16
284 285 9.160576 CGTCTTTCGAAAATGTAAAATACAACA 57.839 29.630 12.41 0.00 41.27 3.33
285 286 9.372541 TCGTCTTTCGAAAATGTAAAATACAAC 57.627 29.630 12.41 0.00 45.98 3.32
329 330 6.812656 CACCTTTGCAAAATATTGTAGATGCA 59.187 34.615 13.84 0.00 41.57 3.96
330 331 6.813152 ACACCTTTGCAAAATATTGTAGATGC 59.187 34.615 13.84 0.00 38.85 3.91
331 332 8.761575 AACACCTTTGCAAAATATTGTAGATG 57.238 30.769 13.84 0.00 38.85 2.90
332 333 9.777297 AAAACACCTTTGCAAAATATTGTAGAT 57.223 25.926 13.84 2.43 38.85 1.98
333 334 9.606631 AAAAACACCTTTGCAAAATATTGTAGA 57.393 25.926 13.84 0.00 38.85 2.59
334 335 9.649024 CAAAAACACCTTTGCAAAATATTGTAG 57.351 29.630 13.84 0.00 38.85 2.74
335 336 9.383519 TCAAAAACACCTTTGCAAAATATTGTA 57.616 25.926 13.84 0.00 38.85 2.41
336 337 8.180920 GTCAAAAACACCTTTGCAAAATATTGT 58.819 29.630 13.84 10.45 38.85 2.71
337 338 7.643371 GGTCAAAAACACCTTTGCAAAATATTG 59.357 33.333 13.84 9.85 36.44 1.90
338 339 7.555914 AGGTCAAAAACACCTTTGCAAAATATT 59.444 29.630 13.84 2.83 41.95 1.28
339 340 7.053498 AGGTCAAAAACACCTTTGCAAAATAT 58.947 30.769 13.84 0.00 41.95 1.28
340 341 6.410540 AGGTCAAAAACACCTTTGCAAAATA 58.589 32.000 13.84 0.00 41.95 1.40
341 342 5.252547 AGGTCAAAAACACCTTTGCAAAAT 58.747 33.333 13.84 1.32 41.95 1.82
342 343 4.646572 AGGTCAAAAACACCTTTGCAAAA 58.353 34.783 13.84 0.00 41.95 2.44
343 344 4.249661 GAGGTCAAAAACACCTTTGCAAA 58.750 39.130 12.14 12.14 44.87 3.68
344 345 3.674682 CGAGGTCAAAAACACCTTTGCAA 60.675 43.478 0.00 0.00 44.87 4.08
345 346 2.159310 CGAGGTCAAAAACACCTTTGCA 60.159 45.455 0.00 0.00 44.87 4.08
346 347 2.459934 CGAGGTCAAAAACACCTTTGC 58.540 47.619 0.00 0.00 44.87 3.68
347 348 2.685897 TCCGAGGTCAAAAACACCTTTG 59.314 45.455 0.00 0.00 44.87 2.77
348 349 2.949644 CTCCGAGGTCAAAAACACCTTT 59.050 45.455 0.00 0.00 44.87 3.11
349 350 2.171870 TCTCCGAGGTCAAAAACACCTT 59.828 45.455 0.00 0.00 44.87 3.50
351 352 2.249844 TCTCCGAGGTCAAAAACACC 57.750 50.000 0.00 0.00 0.00 4.16
352 353 3.139077 ACATCTCCGAGGTCAAAAACAC 58.861 45.455 0.00 0.00 0.00 3.32
353 354 3.485463 ACATCTCCGAGGTCAAAAACA 57.515 42.857 0.00 0.00 0.00 2.83
354 355 5.934935 TTTACATCTCCGAGGTCAAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
355 356 8.801882 ATATTTTACATCTCCGAGGTCAAAAA 57.198 30.769 0.00 0.00 26.74 1.94
356 357 9.542462 CTATATTTTACATCTCCGAGGTCAAAA 57.458 33.333 0.00 0.00 26.74 2.44
357 358 8.701895 ACTATATTTTACATCTCCGAGGTCAAA 58.298 33.333 0.00 0.00 0.00 2.69
358 359 8.246430 ACTATATTTTACATCTCCGAGGTCAA 57.754 34.615 0.00 0.00 0.00 3.18
359 360 7.834881 ACTATATTTTACATCTCCGAGGTCA 57.165 36.000 0.00 0.00 0.00 4.02
360 361 8.142551 ACAACTATATTTTACATCTCCGAGGTC 58.857 37.037 0.00 0.00 0.00 3.85
361 362 8.019656 ACAACTATATTTTACATCTCCGAGGT 57.980 34.615 0.00 0.00 0.00 3.85
362 363 8.888579 AACAACTATATTTTACATCTCCGAGG 57.111 34.615 0.00 0.00 0.00 4.63
377 378 9.189156 ACCATGTAGATGCAAAAACAACTATAT 57.811 29.630 0.00 0.00 30.40 0.86
378 379 8.574251 ACCATGTAGATGCAAAAACAACTATA 57.426 30.769 0.00 0.00 29.13 1.31
379 380 7.466746 ACCATGTAGATGCAAAAACAACTAT 57.533 32.000 0.00 0.00 29.13 2.12
380 381 6.892658 ACCATGTAGATGCAAAAACAACTA 57.107 33.333 0.00 0.00 0.00 2.24
381 382 5.789643 ACCATGTAGATGCAAAAACAACT 57.210 34.783 0.00 0.00 0.00 3.16
382 383 9.289303 CTATTACCATGTAGATGCAAAAACAAC 57.711 33.333 0.00 0.00 0.00 3.32
383 384 7.973388 GCTATTACCATGTAGATGCAAAAACAA 59.027 33.333 0.00 0.00 0.00 2.83
384 385 7.339212 AGCTATTACCATGTAGATGCAAAAACA 59.661 33.333 0.00 0.00 0.00 2.83
385 386 7.707104 AGCTATTACCATGTAGATGCAAAAAC 58.293 34.615 0.00 0.00 0.00 2.43
386 387 7.880160 AGCTATTACCATGTAGATGCAAAAA 57.120 32.000 0.00 0.00 0.00 1.94
387 388 7.880160 AAGCTATTACCATGTAGATGCAAAA 57.120 32.000 0.00 0.00 0.00 2.44
388 389 7.254761 CGAAAGCTATTACCATGTAGATGCAAA 60.255 37.037 0.00 0.00 0.00 3.68
389 390 6.202762 CGAAAGCTATTACCATGTAGATGCAA 59.797 38.462 0.00 0.00 0.00 4.08
390 391 5.696270 CGAAAGCTATTACCATGTAGATGCA 59.304 40.000 0.00 0.00 0.00 3.96
391 392 6.158175 CGAAAGCTATTACCATGTAGATGC 57.842 41.667 0.00 0.00 0.00 3.91
409 410 3.181506 GGAGGTTTTCTATGCAGCGAAAG 60.182 47.826 11.51 0.00 31.52 2.62
410 411 2.747446 GGAGGTTTTCTATGCAGCGAAA 59.253 45.455 8.60 8.60 0.00 3.46
411 412 2.356135 GGAGGTTTTCTATGCAGCGAA 58.644 47.619 0.00 0.00 0.00 4.70
412 413 1.739035 CGGAGGTTTTCTATGCAGCGA 60.739 52.381 0.00 0.00 0.00 4.93
413 414 0.652592 CGGAGGTTTTCTATGCAGCG 59.347 55.000 0.00 0.00 0.00 5.18
428 429 0.610687 AGGAAAACTCTGCTCCGGAG 59.389 55.000 27.83 27.83 42.15 4.63
429 430 1.056660 AAGGAAAACTCTGCTCCGGA 58.943 50.000 2.93 2.93 34.22 5.14
430 431 1.807142 GAAAGGAAAACTCTGCTCCGG 59.193 52.381 0.00 0.00 34.22 5.14
431 432 2.772287 AGAAAGGAAAACTCTGCTCCG 58.228 47.619 0.00 0.00 34.22 4.63
432 433 4.580580 TCAAAGAAAGGAAAACTCTGCTCC 59.419 41.667 0.00 0.00 0.00 4.70
433 434 5.757850 TCAAAGAAAGGAAAACTCTGCTC 57.242 39.130 0.00 0.00 0.00 4.26
434 435 6.071391 TGTTTCAAAGAAAGGAAAACTCTGCT 60.071 34.615 0.00 0.00 35.03 4.24
435 436 6.099341 TGTTTCAAAGAAAGGAAAACTCTGC 58.901 36.000 0.00 0.00 35.03 4.26
436 437 7.063426 GGTTGTTTCAAAGAAAGGAAAACTCTG 59.937 37.037 0.00 0.00 35.03 3.35
437 438 7.039011 AGGTTGTTTCAAAGAAAGGAAAACTCT 60.039 33.333 0.00 0.00 35.03 3.24
438 439 7.063426 CAGGTTGTTTCAAAGAAAGGAAAACTC 59.937 37.037 0.00 0.00 35.03 3.01
439 440 6.873605 CAGGTTGTTTCAAAGAAAGGAAAACT 59.126 34.615 0.00 0.00 35.03 2.66
440 441 6.649141 ACAGGTTGTTTCAAAGAAAGGAAAAC 59.351 34.615 0.00 0.00 35.03 2.43
441 442 6.764379 ACAGGTTGTTTCAAAGAAAGGAAAA 58.236 32.000 0.00 0.00 35.03 2.29
442 443 6.015010 TGACAGGTTGTTTCAAAGAAAGGAAA 60.015 34.615 0.00 0.00 0.00 3.13
443 444 5.478679 TGACAGGTTGTTTCAAAGAAAGGAA 59.521 36.000 0.00 0.00 0.00 3.36
444 445 5.013547 TGACAGGTTGTTTCAAAGAAAGGA 58.986 37.500 0.00 0.00 0.00 3.36
445 446 5.323371 TGACAGGTTGTTTCAAAGAAAGG 57.677 39.130 0.00 0.00 0.00 3.11
446 447 6.476706 GGAATGACAGGTTGTTTCAAAGAAAG 59.523 38.462 0.00 0.00 0.00 2.62
447 448 6.154363 AGGAATGACAGGTTGTTTCAAAGAAA 59.846 34.615 0.00 0.00 0.00 2.52
448 449 5.656416 AGGAATGACAGGTTGTTTCAAAGAA 59.344 36.000 0.00 0.00 0.00 2.52
449 450 5.067674 CAGGAATGACAGGTTGTTTCAAAGA 59.932 40.000 0.00 0.00 0.00 2.52
450 451 5.284079 CAGGAATGACAGGTTGTTTCAAAG 58.716 41.667 0.00 0.00 0.00 2.77
451 452 4.099266 CCAGGAATGACAGGTTGTTTCAAA 59.901 41.667 0.00 0.00 0.00 2.69
452 453 3.636300 CCAGGAATGACAGGTTGTTTCAA 59.364 43.478 0.00 0.00 0.00 2.69
453 454 3.117701 TCCAGGAATGACAGGTTGTTTCA 60.118 43.478 0.00 0.00 0.00 2.69
454 455 3.486383 TCCAGGAATGACAGGTTGTTTC 58.514 45.455 0.00 0.00 0.00 2.78
455 456 3.593442 TCCAGGAATGACAGGTTGTTT 57.407 42.857 0.00 0.00 0.00 2.83
456 457 3.814504 ATCCAGGAATGACAGGTTGTT 57.185 42.857 0.00 0.00 0.00 2.83
457 458 3.814504 AATCCAGGAATGACAGGTTGT 57.185 42.857 0.00 0.00 0.00 3.32
458 459 3.445096 GGAAATCCAGGAATGACAGGTTG 59.555 47.826 0.00 0.00 35.64 3.77
459 460 3.075882 TGGAAATCCAGGAATGACAGGTT 59.924 43.478 0.00 0.00 42.01 3.50
460 461 2.649312 TGGAAATCCAGGAATGACAGGT 59.351 45.455 0.00 0.00 42.01 4.00
461 462 3.370840 TGGAAATCCAGGAATGACAGG 57.629 47.619 0.00 0.00 42.01 4.00
472 473 4.895889 TGTTGTGGTGTATTTGGAAATCCA 59.104 37.500 0.00 0.00 45.94 3.41
473 474 5.461032 TGTTGTGGTGTATTTGGAAATCC 57.539 39.130 0.00 0.00 0.00 3.01
474 475 5.694458 GGTTGTTGTGGTGTATTTGGAAATC 59.306 40.000 0.00 0.00 0.00 2.17
475 476 5.606505 GGTTGTTGTGGTGTATTTGGAAAT 58.393 37.500 0.00 0.00 0.00 2.17
476 477 4.440250 CGGTTGTTGTGGTGTATTTGGAAA 60.440 41.667 0.00 0.00 0.00 3.13
477 478 3.066900 CGGTTGTTGTGGTGTATTTGGAA 59.933 43.478 0.00 0.00 0.00 3.53
478 479 2.619177 CGGTTGTTGTGGTGTATTTGGA 59.381 45.455 0.00 0.00 0.00 3.53
479 480 2.359531 ACGGTTGTTGTGGTGTATTTGG 59.640 45.455 0.00 0.00 0.00 3.28
480 481 3.314080 AGACGGTTGTTGTGGTGTATTTG 59.686 43.478 0.00 0.00 0.00 2.32
481 482 3.547746 AGACGGTTGTTGTGGTGTATTT 58.452 40.909 0.00 0.00 0.00 1.40
482 483 3.202829 AGACGGTTGTTGTGGTGTATT 57.797 42.857 0.00 0.00 0.00 1.89
483 484 2.922740 AGACGGTTGTTGTGGTGTAT 57.077 45.000 0.00 0.00 0.00 2.29
484 485 2.695127 AAGACGGTTGTTGTGGTGTA 57.305 45.000 0.00 0.00 0.00 2.90
485 486 2.695127 TAAGACGGTTGTTGTGGTGT 57.305 45.000 0.00 0.00 0.00 4.16
486 487 3.363575 CGAATAAGACGGTTGTTGTGGTG 60.364 47.826 0.00 0.00 0.00 4.17
487 488 2.803956 CGAATAAGACGGTTGTTGTGGT 59.196 45.455 0.00 0.00 0.00 4.16
488 489 2.158841 CCGAATAAGACGGTTGTTGTGG 59.841 50.000 0.00 0.00 44.57 4.17
489 490 3.449322 CCGAATAAGACGGTTGTTGTG 57.551 47.619 0.00 0.00 44.57 3.33
518 519 0.528901 TTCCGGCCATATGACGAACG 60.529 55.000 17.63 8.69 0.00 3.95
543 545 3.143279 GACGTAACAAAACTTGCGATCG 58.857 45.455 11.69 11.69 33.90 3.69
575 577 0.704076 AGCCCATCCTACTTTTGGCA 59.296 50.000 0.00 0.00 41.33 4.92
588 590 2.046285 GCGTTTGCTGGTAGCCCAT 61.046 57.895 0.00 0.00 41.51 4.00
606 608 0.740737 CAGGGAAATTTAGGCGCTGG 59.259 55.000 7.64 0.00 38.48 4.85
643 645 0.880718 GGATCGATGAACGGGGAAGC 60.881 60.000 0.54 0.00 42.82 3.86
795 797 1.439543 AATCTCCCATCCTACCTGCC 58.560 55.000 0.00 0.00 0.00 4.85
829 845 5.702670 AGCGAGAACAGAAGAAATCAAATCA 59.297 36.000 0.00 0.00 0.00 2.57
835 851 3.997021 TGGAAGCGAGAACAGAAGAAATC 59.003 43.478 0.00 0.00 0.00 2.17
881 897 2.221286 CGCAGATCTACACGTACGAGAT 59.779 50.000 24.41 19.18 32.57 2.75
966 982 0.954449 AGGTCGTGATCGTGACTCGT 60.954 55.000 14.52 1.09 40.80 4.18
1015 1031 2.668280 GCGCAGAACCGTTGTCCTC 61.668 63.158 0.30 0.00 0.00 3.71
1017 1033 4.072088 CGCGCAGAACCGTTGTCC 62.072 66.667 8.75 0.00 0.00 4.02
1059 1075 1.227793 GCAGGAGTATGAGGGCTGC 60.228 63.158 0.00 0.00 0.00 5.25
1068 1084 3.144120 CTCGCCGCTGCAGGAGTAT 62.144 63.158 17.12 0.00 37.32 2.12
1222 1247 0.620556 AAGGATGAGTGCCGGTCAAT 59.379 50.000 1.90 0.00 0.00 2.57
1378 1403 1.390565 CTCTTCGGGTCGTATCCAGT 58.609 55.000 0.00 0.00 0.00 4.00
1383 1408 4.680487 AGCCTCTTCGGGTCGTAT 57.320 55.556 0.00 0.00 40.09 3.06
1521 1546 0.251354 AGTCGTAGTAGAGGTCGCCA 59.749 55.000 0.00 0.00 0.00 5.69
1561 1586 2.329690 CCTCGCGACGGATGAGAG 59.670 66.667 16.62 0.00 31.31 3.20
1595 1620 1.275291 TGGAGTTTCCTGTCGACATCC 59.725 52.381 20.40 21.04 37.46 3.51
1656 1681 2.608752 GGGCTTCTTGTTCATGCTTGTG 60.609 50.000 0.00 0.00 0.00 3.33
1675 1700 2.183555 GGTAGCGAACCTGACGGG 59.816 66.667 0.00 0.00 45.75 5.28
1741 1766 1.402613 CAAACCATGCGAGATGATGCA 59.597 47.619 0.00 0.00 46.51 3.96
1764 1789 3.165670 AAAAACCGCGCGCACGTAA 62.166 52.632 32.61 0.00 42.83 3.18
1766 1791 4.949125 GAAAAACCGCGCGCACGT 62.949 61.111 32.61 23.15 42.83 4.49
1775 1800 8.475331 AGTACTAATGTGATACAGAAAAACCG 57.525 34.615 0.00 0.00 0.00 4.44
1776 1801 8.880750 GGAGTACTAATGTGATACAGAAAAACC 58.119 37.037 0.00 0.00 0.00 3.27
1781 1806 7.355101 AGAGGGAGTACTAATGTGATACAGAA 58.645 38.462 0.00 0.00 0.00 3.02
1851 1876 9.813446 CCCTCTGTAAACTAATATAAGAACGTT 57.187 33.333 0.00 0.00 0.00 3.99
1852 1877 9.193806 TCCCTCTGTAAACTAATATAAGAACGT 57.806 33.333 0.00 0.00 0.00 3.99
1853 1878 9.680315 CTCCCTCTGTAAACTAATATAAGAACG 57.320 37.037 0.00 0.00 0.00 3.95
1859 1884 9.584008 CAGGTACTCCCTCTGTAAACTAATATA 57.416 37.037 0.00 0.00 43.86 0.86
1860 1885 7.015389 GCAGGTACTCCCTCTGTAAACTAATAT 59.985 40.741 0.00 0.00 43.86 1.28
1861 1886 6.323225 GCAGGTACTCCCTCTGTAAACTAATA 59.677 42.308 0.00 0.00 43.86 0.98
1862 1887 5.128991 GCAGGTACTCCCTCTGTAAACTAAT 59.871 44.000 0.00 0.00 43.86 1.73
1863 1888 4.465305 GCAGGTACTCCCTCTGTAAACTAA 59.535 45.833 0.00 0.00 43.86 2.24
1864 1889 4.021916 GCAGGTACTCCCTCTGTAAACTA 58.978 47.826 0.00 0.00 43.86 2.24
1865 1890 2.832733 GCAGGTACTCCCTCTGTAAACT 59.167 50.000 0.00 0.00 43.86 2.66
1866 1891 2.832733 AGCAGGTACTCCCTCTGTAAAC 59.167 50.000 0.00 0.00 43.86 2.01
1867 1892 3.185880 AGCAGGTACTCCCTCTGTAAA 57.814 47.619 0.00 0.00 43.86 2.01
1868 1893 2.921834 AGCAGGTACTCCCTCTGTAA 57.078 50.000 0.00 0.00 43.86 2.41
1869 1894 4.537945 ATTAGCAGGTACTCCCTCTGTA 57.462 45.455 0.00 0.00 43.86 2.74
1870 1895 2.921834 TTAGCAGGTACTCCCTCTGT 57.078 50.000 0.00 0.00 43.86 3.41
1871 1896 5.305644 ACATAATTAGCAGGTACTCCCTCTG 59.694 44.000 0.00 0.00 43.86 3.35
1872 1897 5.468658 ACATAATTAGCAGGTACTCCCTCT 58.531 41.667 0.00 0.00 43.86 3.69
1873 1898 5.279556 GGACATAATTAGCAGGTACTCCCTC 60.280 48.000 0.00 0.00 43.86 4.30
1875 1900 4.262938 GGGACATAATTAGCAGGTACTCCC 60.263 50.000 0.00 0.00 34.60 4.30
1876 1901 4.593634 AGGGACATAATTAGCAGGTACTCC 59.406 45.833 0.00 0.00 34.60 3.85
1879 1904 4.038883 ACGAGGGACATAATTAGCAGGTAC 59.961 45.833 0.00 0.00 0.00 3.34
1892 1917 1.115467 GTGAGGATGACGAGGGACAT 58.885 55.000 0.00 0.00 0.00 3.06
1904 1929 2.356535 GCCAACATTCTCAGGTGAGGAT 60.357 50.000 7.14 0.80 40.97 3.24
1909 1934 2.507484 TGAAGCCAACATTCTCAGGTG 58.493 47.619 0.00 0.00 0.00 4.00
1915 1940 3.322828 ACTGCAATTGAAGCCAACATTCT 59.677 39.130 13.78 0.00 34.72 2.40
1995 2020 1.076044 AACAGCACCAACCAGCCTT 60.076 52.632 0.00 0.00 0.00 4.35
2001 2026 3.977244 CGGCCAACAGCACCAACC 61.977 66.667 2.24 0.00 46.50 3.77
2059 2084 3.931907 TCCAAATTCAGGATCATCGGT 57.068 42.857 0.00 0.00 0.00 4.69
2066 2091 4.482025 TCCTACCCATTCCAAATTCAGGAT 59.518 41.667 0.86 0.00 34.56 3.24
2114 2139 3.006940 GCCGATCAACAACATGGAGTTA 58.993 45.455 0.00 0.00 38.74 2.24
2142 2167 0.258774 ACCAATCTATGTGCACCCCC 59.741 55.000 15.69 0.00 0.00 5.40
2143 2168 2.487265 CCTACCAATCTATGTGCACCCC 60.487 54.545 15.69 0.00 0.00 4.95
2166 2191 2.450609 ACGTAAGAACACGCCAAGAT 57.549 45.000 0.00 0.00 45.77 2.40
2214 2549 4.260334 GCAGCATTTGTGTTTTGTTTCCTC 60.260 41.667 0.00 0.00 0.00 3.71
2250 2588 3.577805 AAGTTGCTACCAGAACCAAGT 57.422 42.857 0.00 0.00 0.00 3.16
2251 2589 4.610945 CAAAAGTTGCTACCAGAACCAAG 58.389 43.478 0.00 0.00 0.00 3.61
2292 3232 1.619432 CCTCAGCCAGGCCCAATTAAA 60.619 52.381 8.22 0.00 34.56 1.52
2294 3234 0.918799 TCCTCAGCCAGGCCCAATTA 60.919 55.000 8.22 0.00 43.08 1.40
2338 3278 4.288531 GCAATCAAACTAGATGCAGATGC 58.711 43.478 0.00 0.00 42.50 3.91
2362 3302 3.274288 GTTGCAAGCTAGAAGGTATGCT 58.726 45.455 0.00 0.00 33.84 3.79
2377 3317 1.434622 TTTCGTTACGCCCGTTGCAA 61.435 50.000 0.00 0.00 41.33 4.08
2408 3348 2.028925 CAAACAAGCGGCCAACCC 59.971 61.111 2.24 0.00 0.00 4.11
2425 3365 0.667184 CATGCTTTGTGTTTCCGCCC 60.667 55.000 0.00 0.00 0.00 6.13
2480 3424 4.801330 TCTCATCACCTCGCTAAAAAGA 57.199 40.909 0.00 0.00 0.00 2.52
2486 3430 4.456222 GCTAGTAATCTCATCACCTCGCTA 59.544 45.833 0.00 0.00 0.00 4.26
2501 3445 3.119743 TGTTCTACGCGTGTGCTAGTAAT 60.120 43.478 24.59 0.00 39.65 1.89
2514 3458 4.946784 ATGTCTTTGGATTGTTCTACGC 57.053 40.909 0.00 0.00 0.00 4.42
2515 3459 6.961359 TGTATGTCTTTGGATTGTTCTACG 57.039 37.500 0.00 0.00 0.00 3.51
2525 3475 7.121168 CCTTGCTATCTTTTGTATGTCTTTGGA 59.879 37.037 0.00 0.00 0.00 3.53
2535 3486 6.707290 TGCTTACTCCTTGCTATCTTTTGTA 58.293 36.000 0.00 0.00 0.00 2.41
2618 3574 7.990917 TGAAAACTGCTATGTTTAAGTGTGAA 58.009 30.769 4.14 0.00 38.98 3.18
2650 3606 9.829507 AGTTTACTATCGGCTATATCGTACTAT 57.170 33.333 0.00 0.00 0.00 2.12
2664 3620 3.318275 TGCTCCAGCTAGTTTACTATCGG 59.682 47.826 0.00 0.00 42.66 4.18
2670 3626 2.955614 TCGTTGCTCCAGCTAGTTTAC 58.044 47.619 0.00 0.00 42.66 2.01
2676 3632 1.545841 TCTCTTCGTTGCTCCAGCTA 58.454 50.000 0.00 0.00 42.66 3.32
2722 3678 4.947147 TGGTGACCAAGTGCGGGC 62.947 66.667 0.00 0.00 33.00 6.13
2769 3735 4.373116 TCCCGACACGCTCAAGGC 62.373 66.667 0.00 0.00 37.64 4.35
2826 3794 3.853330 CTTCACCGCCGTGCATCG 61.853 66.667 0.00 0.00 40.04 3.84
2936 3905 0.756903 ACTTACTGGTTGTGCCGACT 59.243 50.000 0.00 0.00 41.21 4.18
2945 3914 3.214328 CTTCACCAAGCACTTACTGGTT 58.786 45.455 0.00 0.00 41.46 3.67
2946 3915 2.172717 ACTTCACCAAGCACTTACTGGT 59.827 45.455 0.00 0.00 32.09 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.