Multiple sequence alignment - TraesCS1A01G123100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G123100 chr1A 100.000 2213 0 0 1 2213 142100618 142102830 0.000000e+00 4087
1 TraesCS1A01G123100 chr1D 97.380 916 23 1 937 1852 126971980 126972894 0.000000e+00 1557
2 TraesCS1A01G123100 chr1D 92.491 799 57 3 34 831 126971022 126971818 0.000000e+00 1140
3 TraesCS1A01G123100 chr1B 93.738 1038 38 6 830 1852 195102793 195101768 0.000000e+00 1531
4 TraesCS1A01G123100 chr1B 92.788 832 56 4 3 831 195103652 195102822 0.000000e+00 1201
5 TraesCS1A01G123100 chr5B 83.582 335 44 7 1885 2213 32562502 32562831 9.930000e-79 303
6 TraesCS1A01G123100 chr6D 89.474 209 16 3 991 1196 17317660 17317865 2.180000e-65 259
7 TraesCS1A01G123100 chr6A 88.995 209 17 3 991 1196 17943204 17943409 1.010000e-63 254
8 TraesCS1A01G123100 chr6B 88.293 205 18 3 991 1192 30324030 30324231 7.900000e-60 241
9 TraesCS1A01G123100 chr3B 84.133 271 18 11 1943 2213 424720678 424720433 2.840000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G123100 chr1A 142100618 142102830 2212 False 4087.0 4087 100.0000 1 2213 1 chr1A.!!$F1 2212
1 TraesCS1A01G123100 chr1D 126971022 126972894 1872 False 1348.5 1557 94.9355 34 1852 2 chr1D.!!$F1 1818
2 TraesCS1A01G123100 chr1B 195101768 195103652 1884 True 1366.0 1531 93.2630 3 1852 2 chr1B.!!$R1 1849

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 872 0.481128 AAACTCGAATGGTTGGGGGT 59.519 50.0 0.0 0.0 0.0 4.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2170 2259 0.026674 CGTCCACGCGTATTCGTCTA 59.973 55.0 13.44 0.0 41.21 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 4.165372 ACACCTTCTCCCTCTGTTTTACAA 59.835 41.667 0.00 0.00 0.00 2.41
129 130 8.062065 TGTTTTACAACACCTTGAAGAGAAAT 57.938 30.769 0.00 0.00 38.03 2.17
159 160 4.508662 AGCTCTAACTAACTGCAACATCC 58.491 43.478 0.00 0.00 0.00 3.51
200 201 6.141211 GCATTGCAGTTCATATCAAACATACG 59.859 38.462 3.15 0.00 0.00 3.06
235 236 1.586028 GCGCAAATCCAAAGAGGCA 59.414 52.632 0.30 0.00 37.29 4.75
285 287 1.442886 ATTTCTTGGGGTGGCCTCCA 61.443 55.000 24.81 16.37 0.00 3.86
299 301 1.004560 CTCCACGAGCCAAAGCAGA 60.005 57.895 0.00 0.00 43.56 4.26
409 411 1.691976 ACAACACCTGAGGAATGACGA 59.308 47.619 4.99 0.00 0.00 4.20
466 468 1.376037 CGGAAGTCACAGAAGGGGC 60.376 63.158 0.00 0.00 0.00 5.80
475 477 1.078848 CAGAAGGGGCCGAAGTGAG 60.079 63.158 0.00 0.00 0.00 3.51
508 510 2.820787 AGAGTGACAACTAGGGTTCTCG 59.179 50.000 0.00 0.00 36.52 4.04
557 560 2.751436 CAACCCAGCCATCCACGG 60.751 66.667 0.00 0.00 0.00 4.94
559 562 2.534396 AACCCAGCCATCCACGGAA 61.534 57.895 0.00 0.00 0.00 4.30
560 563 1.863155 AACCCAGCCATCCACGGAAT 61.863 55.000 0.00 0.00 0.00 3.01
561 564 0.986019 ACCCAGCCATCCACGGAATA 60.986 55.000 0.00 0.00 0.00 1.75
603 606 0.984230 AATCTTGGAACTGCCCTCGA 59.016 50.000 0.00 0.00 34.97 4.04
657 660 0.540830 ATGCGCCCCACTAAAACCAA 60.541 50.000 4.18 0.00 0.00 3.67
723 726 4.754667 GCCGACCCCGACTTCCAC 62.755 72.222 0.00 0.00 38.22 4.02
794 798 1.827969 CTCTCCTCACCGGTCTTGATT 59.172 52.381 2.59 0.00 0.00 2.57
822 826 3.183373 GCTCGGATCAATCGATCTCAAAC 59.817 47.826 0.00 0.00 46.30 2.93
831 835 3.868757 TCGATCTCAAACTCGAATGGT 57.131 42.857 0.00 0.00 40.64 3.55
838 872 0.481128 AAACTCGAATGGTTGGGGGT 59.519 50.000 0.00 0.00 0.00 4.95
849 883 2.451273 TGGTTGGGGGTTCCATTTCTTA 59.549 45.455 0.00 0.00 46.52 2.10
852 922 1.706305 TGGGGGTTCCATTTCTTACGT 59.294 47.619 0.00 0.00 41.46 3.57
861 931 6.149807 GGTTCCATTTCTTACGTGGTAATTGA 59.850 38.462 0.00 0.00 34.61 2.57
897 967 3.181443 ACCTTCTCCCATAAATAAGCCCG 60.181 47.826 0.00 0.00 0.00 6.13
913 983 1.358759 CCGTGGAAACAAGCACCAC 59.641 57.895 0.00 0.00 46.06 4.16
930 1000 1.300697 ACCGAAACAGAGACGCACC 60.301 57.895 0.00 0.00 0.00 5.01
931 1001 2.027625 CCGAAACAGAGACGCACCC 61.028 63.158 0.00 0.00 0.00 4.61
933 1003 1.371558 GAAACAGAGACGCACCCCT 59.628 57.895 0.00 0.00 0.00 4.79
934 1004 0.606604 GAAACAGAGACGCACCCCTA 59.393 55.000 0.00 0.00 0.00 3.53
1333 1417 3.637998 TTCGTTAGCTTTCTCGTGTCT 57.362 42.857 0.00 0.00 0.00 3.41
1337 1421 4.023792 TCGTTAGCTTTCTCGTGTCTGTTA 60.024 41.667 0.00 0.00 0.00 2.41
1555 1643 1.421410 GCGGACGTATGCTGTCTTGG 61.421 60.000 4.36 0.00 36.58 3.61
1598 1686 5.062308 GCTTAGTTGTGATTTCGTAGGAGTG 59.938 44.000 0.00 0.00 0.00 3.51
1606 1694 5.631512 GTGATTTCGTAGGAGTGCTATGATC 59.368 44.000 13.68 10.12 0.00 2.92
1617 1705 5.010922 GGAGTGCTATGATCTCTGAATCAGT 59.989 44.000 10.36 0.00 38.96 3.41
1681 1769 4.809958 AGTCTTGCATCGAGATTGAAGATG 59.190 41.667 0.00 0.77 43.22 2.90
1683 1771 5.466058 GTCTTGCATCGAGATTGAAGATGAT 59.534 40.000 8.62 0.00 43.06 2.45
1757 1846 0.475475 GTGGCCATGATCATCCTGGA 59.525 55.000 9.72 0.00 34.57 3.86
1776 1865 4.388485 TGGACCACCAATATGATTGATCG 58.612 43.478 0.00 0.00 43.91 3.69
1852 1941 4.718858 GGTTTAATTCAACCAAAACCGC 57.281 40.909 15.30 0.00 45.12 5.68
1853 1942 4.373527 GGTTTAATTCAACCAAAACCGCT 58.626 39.130 15.30 0.00 45.12 5.52
1854 1943 4.812091 GGTTTAATTCAACCAAAACCGCTT 59.188 37.500 15.30 0.00 45.12 4.68
1855 1944 5.050634 GGTTTAATTCAACCAAAACCGCTTC 60.051 40.000 15.30 0.00 45.12 3.86
1856 1945 5.523438 TTAATTCAACCAAAACCGCTTCT 57.477 34.783 0.00 0.00 0.00 2.85
1857 1946 4.400529 AATTCAACCAAAACCGCTTCTT 57.599 36.364 0.00 0.00 0.00 2.52
1858 1947 3.878160 TTCAACCAAAACCGCTTCTTT 57.122 38.095 0.00 0.00 0.00 2.52
1859 1948 4.985538 TTCAACCAAAACCGCTTCTTTA 57.014 36.364 0.00 0.00 0.00 1.85
1860 1949 4.985538 TCAACCAAAACCGCTTCTTTAA 57.014 36.364 0.00 0.00 0.00 1.52
1861 1950 4.927422 TCAACCAAAACCGCTTCTTTAAG 58.073 39.130 0.00 0.00 35.68 1.85
1862 1951 4.048504 CAACCAAAACCGCTTCTTTAAGG 58.951 43.478 0.00 0.00 32.98 2.69
1863 1952 2.626266 ACCAAAACCGCTTCTTTAAGGG 59.374 45.455 0.00 0.00 43.45 3.95
1864 1953 2.888414 CCAAAACCGCTTCTTTAAGGGA 59.112 45.455 3.99 0.00 45.94 4.20
1865 1954 3.319689 CCAAAACCGCTTCTTTAAGGGAA 59.680 43.478 3.99 0.00 45.94 3.97
1866 1955 4.202172 CCAAAACCGCTTCTTTAAGGGAAA 60.202 41.667 3.99 0.00 45.94 3.13
1867 1956 4.579454 AAACCGCTTCTTTAAGGGAAAC 57.421 40.909 3.99 0.00 45.94 2.78
1868 1957 2.148768 ACCGCTTCTTTAAGGGAAACG 58.851 47.619 3.99 8.23 45.94 3.60
1869 1958 2.148768 CCGCTTCTTTAAGGGAAACGT 58.851 47.619 11.92 0.00 45.94 3.99
1870 1959 2.551032 CCGCTTCTTTAAGGGAAACGTT 59.449 45.455 0.00 0.00 45.94 3.99
1871 1960 3.004002 CCGCTTCTTTAAGGGAAACGTTT 59.996 43.478 14.57 14.57 45.94 3.60
1872 1961 3.972502 CGCTTCTTTAAGGGAAACGTTTG 59.027 43.478 20.10 1.02 45.94 2.93
1873 1962 4.295870 GCTTCTTTAAGGGAAACGTTTGG 58.704 43.478 20.10 0.00 39.53 3.28
1874 1963 4.037089 GCTTCTTTAAGGGAAACGTTTGGA 59.963 41.667 20.10 0.00 39.53 3.53
1875 1964 5.278808 GCTTCTTTAAGGGAAACGTTTGGAT 60.279 40.000 20.10 4.44 39.53 3.41
1876 1965 6.718522 TTCTTTAAGGGAAACGTTTGGATT 57.281 33.333 20.10 11.72 39.53 3.01
1877 1966 6.321848 TCTTTAAGGGAAACGTTTGGATTC 57.678 37.500 20.10 2.98 39.53 2.52
1878 1967 4.752661 TTAAGGGAAACGTTTGGATTCG 57.247 40.909 20.10 0.00 39.53 3.34
1879 1968 1.530323 AGGGAAACGTTTGGATTCGG 58.470 50.000 20.10 0.00 0.00 4.30
1880 1969 0.109458 GGGAAACGTTTGGATTCGGC 60.109 55.000 20.10 0.57 0.00 5.54
1881 1970 0.453782 GGAAACGTTTGGATTCGGCG 60.454 55.000 20.10 0.00 0.00 6.46
1882 1971 1.063412 GAAACGTTTGGATTCGGCGC 61.063 55.000 20.10 0.00 0.00 6.53
1883 1972 2.773767 AAACGTTTGGATTCGGCGCG 62.774 55.000 13.81 0.00 0.00 6.86
1885 1974 4.829518 GTTTGGATTCGGCGCGCC 62.830 66.667 39.82 39.82 0.00 6.53
1900 1989 3.434319 GCCAGCACCGGTCACATG 61.434 66.667 2.59 0.35 0.00 3.21
1901 1990 2.032528 CCAGCACCGGTCACATGT 59.967 61.111 2.59 0.00 0.00 3.21
1902 1991 2.327343 CCAGCACCGGTCACATGTG 61.327 63.158 20.18 20.18 0.00 3.21
1903 1992 1.301637 CAGCACCGGTCACATGTGA 60.302 57.895 24.56 24.56 37.24 3.58
1904 1993 1.004560 AGCACCGGTCACATGTGAG 60.005 57.895 28.54 18.93 40.75 3.51
1905 1994 2.034879 GCACCGGTCACATGTGAGG 61.035 63.158 28.54 26.60 40.75 3.86
1906 1995 2.034879 CACCGGTCACATGTGAGGC 61.035 63.158 28.54 17.37 40.75 4.70
1907 1996 2.815211 CCGGTCACATGTGAGGCG 60.815 66.667 28.54 14.23 40.75 5.52
1908 1997 2.048222 CGGTCACATGTGAGGCGT 60.048 61.111 28.54 0.00 40.75 5.68
1909 1998 1.667830 CGGTCACATGTGAGGCGTT 60.668 57.895 28.54 0.00 40.75 4.84
1910 1999 1.868997 GGTCACATGTGAGGCGTTG 59.131 57.895 28.54 0.00 40.75 4.10
1911 2000 1.577328 GGTCACATGTGAGGCGTTGG 61.577 60.000 28.54 0.00 40.75 3.77
1912 2001 0.602638 GTCACATGTGAGGCGTTGGA 60.603 55.000 28.54 1.02 40.75 3.53
1913 2002 0.324614 TCACATGTGAGGCGTTGGAT 59.675 50.000 24.56 0.00 34.14 3.41
1914 2003 0.729116 CACATGTGAGGCGTTGGATC 59.271 55.000 21.64 0.00 0.00 3.36
1915 2004 0.615331 ACATGTGAGGCGTTGGATCT 59.385 50.000 0.00 0.00 0.00 2.75
1916 2005 1.012086 CATGTGAGGCGTTGGATCTG 58.988 55.000 0.00 0.00 0.00 2.90
1917 2006 0.904649 ATGTGAGGCGTTGGATCTGA 59.095 50.000 0.00 0.00 0.00 3.27
1918 2007 0.037326 TGTGAGGCGTTGGATCTGAC 60.037 55.000 0.00 0.00 0.00 3.51
1919 2008 1.078759 GTGAGGCGTTGGATCTGACG 61.079 60.000 14.30 14.30 41.89 4.35
1924 2013 2.301505 CGTTGGATCTGACGCATCC 58.698 57.895 8.11 0.00 40.46 3.51
1925 2014 1.482621 CGTTGGATCTGACGCATCCG 61.483 60.000 8.11 0.00 42.69 4.18
1940 2029 4.208355 CGCATCCGTTGTTTTATATTCCG 58.792 43.478 0.00 0.00 0.00 4.30
1941 2030 4.260456 CGCATCCGTTGTTTTATATTCCGT 60.260 41.667 0.00 0.00 0.00 4.69
1942 2031 5.202640 GCATCCGTTGTTTTATATTCCGTC 58.797 41.667 0.00 0.00 0.00 4.79
1943 2032 5.744490 CATCCGTTGTTTTATATTCCGTCC 58.256 41.667 0.00 0.00 0.00 4.79
1944 2033 4.190772 TCCGTTGTTTTATATTCCGTCCC 58.809 43.478 0.00 0.00 0.00 4.46
1945 2034 3.001533 CCGTTGTTTTATATTCCGTCCCG 59.998 47.826 0.00 0.00 0.00 5.14
1946 2035 3.618150 CGTTGTTTTATATTCCGTCCCGT 59.382 43.478 0.00 0.00 0.00 5.28
1947 2036 4.093261 CGTTGTTTTATATTCCGTCCCGTT 59.907 41.667 0.00 0.00 0.00 4.44
1948 2037 5.390779 CGTTGTTTTATATTCCGTCCCGTTT 60.391 40.000 0.00 0.00 0.00 3.60
1949 2038 5.548706 TGTTTTATATTCCGTCCCGTTTG 57.451 39.130 0.00 0.00 0.00 2.93
1950 2039 4.142643 TGTTTTATATTCCGTCCCGTTTGC 60.143 41.667 0.00 0.00 0.00 3.68
1951 2040 2.243602 TATATTCCGTCCCGTTTGCC 57.756 50.000 0.00 0.00 0.00 4.52
1952 2041 0.544697 ATATTCCGTCCCGTTTGCCT 59.455 50.000 0.00 0.00 0.00 4.75
1953 2042 0.325602 TATTCCGTCCCGTTTGCCTT 59.674 50.000 0.00 0.00 0.00 4.35
1954 2043 1.241315 ATTCCGTCCCGTTTGCCTTG 61.241 55.000 0.00 0.00 0.00 3.61
1955 2044 2.593436 CCGTCCCGTTTGCCTTGT 60.593 61.111 0.00 0.00 0.00 3.16
1956 2045 2.613506 CCGTCCCGTTTGCCTTGTC 61.614 63.158 0.00 0.00 0.00 3.18
1957 2046 2.613506 CGTCCCGTTTGCCTTGTCC 61.614 63.158 0.00 0.00 0.00 4.02
1958 2047 2.114411 TCCCGTTTGCCTTGTCCC 59.886 61.111 0.00 0.00 0.00 4.46
1959 2048 2.115266 CCCGTTTGCCTTGTCCCT 59.885 61.111 0.00 0.00 0.00 4.20
1960 2049 1.530655 CCCGTTTGCCTTGTCCCTT 60.531 57.895 0.00 0.00 0.00 3.95
1961 2050 1.112916 CCCGTTTGCCTTGTCCCTTT 61.113 55.000 0.00 0.00 0.00 3.11
1962 2051 0.313987 CCGTTTGCCTTGTCCCTTTC 59.686 55.000 0.00 0.00 0.00 2.62
1963 2052 0.313987 CGTTTGCCTTGTCCCTTTCC 59.686 55.000 0.00 0.00 0.00 3.13
1964 2053 0.679505 GTTTGCCTTGTCCCTTTCCC 59.320 55.000 0.00 0.00 0.00 3.97
1965 2054 0.560688 TTTGCCTTGTCCCTTTCCCT 59.439 50.000 0.00 0.00 0.00 4.20
1966 2055 0.112412 TTGCCTTGTCCCTTTCCCTC 59.888 55.000 0.00 0.00 0.00 4.30
1967 2056 0.772124 TGCCTTGTCCCTTTCCCTCT 60.772 55.000 0.00 0.00 0.00 3.69
1968 2057 0.322906 GCCTTGTCCCTTTCCCTCTG 60.323 60.000 0.00 0.00 0.00 3.35
1969 2058 0.329596 CCTTGTCCCTTTCCCTCTGG 59.670 60.000 0.00 0.00 0.00 3.86
1970 2059 1.362224 CTTGTCCCTTTCCCTCTGGA 58.638 55.000 0.00 0.00 39.54 3.86
1971 2060 1.003696 CTTGTCCCTTTCCCTCTGGAC 59.996 57.143 0.00 0.00 45.99 4.02
1972 2061 0.840722 TGTCCCTTTCCCTCTGGACC 60.841 60.000 5.17 0.00 45.36 4.46
1973 2062 1.229853 TCCCTTTCCCTCTGGACCC 60.230 63.158 0.00 0.00 41.57 4.46
1974 2063 2.670148 CCCTTTCCCTCTGGACCCG 61.670 68.421 0.00 0.00 41.57 5.28
1975 2064 2.269241 CTTTCCCTCTGGACCCGC 59.731 66.667 0.00 0.00 41.57 6.13
1976 2065 3.327404 TTTCCCTCTGGACCCGCC 61.327 66.667 0.00 0.00 41.57 6.13
1980 2069 3.411517 CCTCTGGACCCGCCCATT 61.412 66.667 0.00 0.00 35.33 3.16
1981 2070 2.190578 CTCTGGACCCGCCCATTC 59.809 66.667 0.00 0.00 35.33 2.67
1982 2071 3.740128 CTCTGGACCCGCCCATTCG 62.740 68.421 0.00 0.00 35.33 3.34
1983 2072 4.096003 CTGGACCCGCCCATTCGT 62.096 66.667 0.00 0.00 35.33 3.85
1984 2073 3.622060 CTGGACCCGCCCATTCGTT 62.622 63.158 0.00 0.00 35.33 3.85
1985 2074 2.822701 GGACCCGCCCATTCGTTC 60.823 66.667 0.00 0.00 0.00 3.95
1986 2075 2.822701 GACCCGCCCATTCGTTCC 60.823 66.667 0.00 0.00 0.00 3.62
1987 2076 3.325201 GACCCGCCCATTCGTTCCT 62.325 63.158 0.00 0.00 0.00 3.36
1988 2077 2.045340 CCCGCCCATTCGTTCCTT 60.045 61.111 0.00 0.00 0.00 3.36
1989 2078 1.677633 CCCGCCCATTCGTTCCTTT 60.678 57.895 0.00 0.00 0.00 3.11
1990 2079 1.654023 CCCGCCCATTCGTTCCTTTC 61.654 60.000 0.00 0.00 0.00 2.62
1991 2080 0.676782 CCGCCCATTCGTTCCTTTCT 60.677 55.000 0.00 0.00 0.00 2.52
1992 2081 0.727398 CGCCCATTCGTTCCTTTCTC 59.273 55.000 0.00 0.00 0.00 2.87
1993 2082 1.095600 GCCCATTCGTTCCTTTCTCC 58.904 55.000 0.00 0.00 0.00 3.71
1994 2083 1.369625 CCCATTCGTTCCTTTCTCCG 58.630 55.000 0.00 0.00 0.00 4.63
1995 2084 0.727398 CCATTCGTTCCTTTCTCCGC 59.273 55.000 0.00 0.00 0.00 5.54
1996 2085 1.438651 CATTCGTTCCTTTCTCCGCA 58.561 50.000 0.00 0.00 0.00 5.69
1997 2086 1.128692 CATTCGTTCCTTTCTCCGCAC 59.871 52.381 0.00 0.00 0.00 5.34
1998 2087 0.105224 TTCGTTCCTTTCTCCGCACA 59.895 50.000 0.00 0.00 0.00 4.57
1999 2088 0.599204 TCGTTCCTTTCTCCGCACAC 60.599 55.000 0.00 0.00 0.00 3.82
2000 2089 0.878523 CGTTCCTTTCTCCGCACACA 60.879 55.000 0.00 0.00 0.00 3.72
2001 2090 1.523758 GTTCCTTTCTCCGCACACAT 58.476 50.000 0.00 0.00 0.00 3.21
2002 2091 1.880027 GTTCCTTTCTCCGCACACATT 59.120 47.619 0.00 0.00 0.00 2.71
2003 2092 1.522668 TCCTTTCTCCGCACACATTG 58.477 50.000 0.00 0.00 0.00 2.82
2004 2093 1.202758 TCCTTTCTCCGCACACATTGT 60.203 47.619 0.00 0.00 0.00 2.71
2005 2094 1.197721 CCTTTCTCCGCACACATTGTC 59.802 52.381 0.00 0.00 0.00 3.18
2006 2095 2.146342 CTTTCTCCGCACACATTGTCT 58.854 47.619 0.00 0.00 0.00 3.41
2007 2096 2.254546 TTCTCCGCACACATTGTCTT 57.745 45.000 0.00 0.00 0.00 3.01
2008 2097 1.795768 TCTCCGCACACATTGTCTTC 58.204 50.000 0.00 0.00 0.00 2.87
2009 2098 1.344438 TCTCCGCACACATTGTCTTCT 59.656 47.619 0.00 0.00 0.00 2.85
2010 2099 2.560981 TCTCCGCACACATTGTCTTCTA 59.439 45.455 0.00 0.00 0.00 2.10
2011 2100 2.668457 CTCCGCACACATTGTCTTCTAC 59.332 50.000 0.00 0.00 0.00 2.59
2012 2101 1.732259 CCGCACACATTGTCTTCTACC 59.268 52.381 0.00 0.00 0.00 3.18
2013 2102 2.612972 CCGCACACATTGTCTTCTACCT 60.613 50.000 0.00 0.00 0.00 3.08
2014 2103 2.668457 CGCACACATTGTCTTCTACCTC 59.332 50.000 0.00 0.00 0.00 3.85
2015 2104 2.668457 GCACACATTGTCTTCTACCTCG 59.332 50.000 0.00 0.00 0.00 4.63
2016 2105 2.668457 CACACATTGTCTTCTACCTCGC 59.332 50.000 0.00 0.00 0.00 5.03
2017 2106 1.920574 CACATTGTCTTCTACCTCGCG 59.079 52.381 0.00 0.00 0.00 5.87
2018 2107 0.924090 CATTGTCTTCTACCTCGCGC 59.076 55.000 0.00 0.00 0.00 6.86
2019 2108 0.525668 ATTGTCTTCTACCTCGCGCG 60.526 55.000 26.76 26.76 0.00 6.86
2020 2109 1.579964 TTGTCTTCTACCTCGCGCGA 61.580 55.000 32.60 32.60 0.00 5.87
2021 2110 1.355916 GTCTTCTACCTCGCGCGAT 59.644 57.895 34.86 22.45 0.00 4.58
2022 2111 0.930742 GTCTTCTACCTCGCGCGATG 60.931 60.000 34.86 31.84 0.00 3.84
2023 2112 2.278596 TTCTACCTCGCGCGATGC 60.279 61.111 34.86 0.00 41.47 3.91
2024 2113 2.936829 CTTCTACCTCGCGCGATGCA 62.937 60.000 34.86 20.47 46.97 3.96
2025 2114 2.936829 TTCTACCTCGCGCGATGCAG 62.937 60.000 34.86 28.63 46.97 4.41
2033 2122 4.607606 CGCGATGCAGCAGCCATG 62.608 66.667 4.74 0.00 41.13 3.66
2034 2123 4.266070 GCGATGCAGCAGCCATGG 62.266 66.667 7.63 7.63 41.13 3.66
2035 2124 2.515290 CGATGCAGCAGCCATGGA 60.515 61.111 18.40 0.00 41.13 3.41
2036 2125 1.897137 CGATGCAGCAGCCATGGAT 60.897 57.895 18.40 6.18 41.13 3.41
2037 2126 0.604511 CGATGCAGCAGCCATGGATA 60.605 55.000 18.40 0.00 41.13 2.59
2038 2127 1.612676 GATGCAGCAGCCATGGATAA 58.387 50.000 18.40 0.00 41.13 1.75
2039 2128 1.268899 GATGCAGCAGCCATGGATAAC 59.731 52.381 18.40 4.79 41.13 1.89
2040 2129 0.752743 TGCAGCAGCCATGGATAACC 60.753 55.000 18.40 0.57 41.13 2.85
2041 2130 0.466922 GCAGCAGCCATGGATAACCT 60.467 55.000 18.40 3.30 33.92 3.50
2042 2131 1.602311 CAGCAGCCATGGATAACCTC 58.398 55.000 18.40 0.00 37.04 3.85
2043 2132 1.142465 CAGCAGCCATGGATAACCTCT 59.858 52.381 18.40 0.00 37.04 3.69
2044 2133 1.419387 AGCAGCCATGGATAACCTCTC 59.581 52.381 18.40 0.00 37.04 3.20
2045 2134 1.875576 GCAGCCATGGATAACCTCTCG 60.876 57.143 18.40 0.00 37.04 4.04
2046 2135 1.051812 AGCCATGGATAACCTCTCGG 58.948 55.000 18.40 0.00 37.04 4.63
2047 2136 0.603975 GCCATGGATAACCTCTCGGC 60.604 60.000 18.40 0.00 37.04 5.54
2048 2137 0.035458 CCATGGATAACCTCTCGGCC 59.965 60.000 5.56 0.00 37.04 6.13
2049 2138 0.758734 CATGGATAACCTCTCGGCCA 59.241 55.000 2.24 0.00 37.04 5.36
2050 2139 1.140852 CATGGATAACCTCTCGGCCAA 59.859 52.381 2.24 0.00 37.04 4.52
2051 2140 0.539986 TGGATAACCTCTCGGCCAAC 59.460 55.000 2.24 0.00 37.04 3.77
2052 2141 0.179054 GGATAACCTCTCGGCCAACC 60.179 60.000 2.24 0.00 0.00 3.77
2053 2142 0.539986 GATAACCTCTCGGCCAACCA 59.460 55.000 2.24 0.00 34.57 3.67
2054 2143 1.141053 GATAACCTCTCGGCCAACCAT 59.859 52.381 2.24 0.00 34.57 3.55
2055 2144 0.539986 TAACCTCTCGGCCAACCATC 59.460 55.000 2.24 0.00 34.57 3.51
2056 2145 1.201429 AACCTCTCGGCCAACCATCT 61.201 55.000 2.24 0.00 34.57 2.90
2057 2146 1.144936 CCTCTCGGCCAACCATCTC 59.855 63.158 2.24 0.00 34.57 2.75
2058 2147 1.144936 CTCTCGGCCAACCATCTCC 59.855 63.158 2.24 0.00 34.57 3.71
2059 2148 2.190578 CTCGGCCAACCATCTCCC 59.809 66.667 2.24 0.00 34.57 4.30
2060 2149 2.609299 TCGGCCAACCATCTCCCA 60.609 61.111 2.24 0.00 34.57 4.37
2061 2150 1.987807 CTCGGCCAACCATCTCCCAT 61.988 60.000 2.24 0.00 34.57 4.00
2062 2151 1.825191 CGGCCAACCATCTCCCATG 60.825 63.158 2.24 0.00 34.57 3.66
2063 2152 2.129785 GGCCAACCATCTCCCATGC 61.130 63.158 0.00 0.00 35.26 4.06
2064 2153 2.129785 GCCAACCATCTCCCATGCC 61.130 63.158 0.00 0.00 0.00 4.40
2065 2154 1.456331 CCAACCATCTCCCATGCCC 60.456 63.158 0.00 0.00 0.00 5.36
2066 2155 1.307309 CAACCATCTCCCATGCCCA 59.693 57.895 0.00 0.00 0.00 5.36
2067 2156 0.105862 CAACCATCTCCCATGCCCAT 60.106 55.000 0.00 0.00 0.00 4.00
2068 2157 0.186873 AACCATCTCCCATGCCCATC 59.813 55.000 0.00 0.00 0.00 3.51
2069 2158 1.076192 CCATCTCCCATGCCCATCC 59.924 63.158 0.00 0.00 0.00 3.51
2070 2159 1.722110 CCATCTCCCATGCCCATCCA 61.722 60.000 0.00 0.00 0.00 3.41
2071 2160 0.538977 CATCTCCCATGCCCATCCAC 60.539 60.000 0.00 0.00 0.00 4.02
2072 2161 1.723128 ATCTCCCATGCCCATCCACC 61.723 60.000 0.00 0.00 0.00 4.61
2073 2162 2.287117 TCCCATGCCCATCCACCT 60.287 61.111 0.00 0.00 0.00 4.00
2074 2163 1.935400 TCCCATGCCCATCCACCTT 60.935 57.895 0.00 0.00 0.00 3.50
2075 2164 1.002017 CCCATGCCCATCCACCTTT 59.998 57.895 0.00 0.00 0.00 3.11
2076 2165 0.261402 CCCATGCCCATCCACCTTTA 59.739 55.000 0.00 0.00 0.00 1.85
2077 2166 1.402787 CCATGCCCATCCACCTTTAC 58.597 55.000 0.00 0.00 0.00 2.01
2078 2167 1.402787 CATGCCCATCCACCTTTACC 58.597 55.000 0.00 0.00 0.00 2.85
2079 2168 0.261696 ATGCCCATCCACCTTTACCC 59.738 55.000 0.00 0.00 0.00 3.69
2080 2169 1.076265 GCCCATCCACCTTTACCCC 60.076 63.158 0.00 0.00 0.00 4.95
2081 2170 1.869824 GCCCATCCACCTTTACCCCA 61.870 60.000 0.00 0.00 0.00 4.96
2082 2171 0.033503 CCCATCCACCTTTACCCCAC 60.034 60.000 0.00 0.00 0.00 4.61
2083 2172 0.033503 CCATCCACCTTTACCCCACC 60.034 60.000 0.00 0.00 0.00 4.61
2084 2173 0.701731 CATCCACCTTTACCCCACCA 59.298 55.000 0.00 0.00 0.00 4.17
2085 2174 1.287739 CATCCACCTTTACCCCACCAT 59.712 52.381 0.00 0.00 0.00 3.55
2086 2175 0.701731 TCCACCTTTACCCCACCATG 59.298 55.000 0.00 0.00 0.00 3.66
2087 2176 0.324275 CCACCTTTACCCCACCATGG 60.324 60.000 11.19 11.19 37.25 3.66
2088 2177 0.701731 CACCTTTACCCCACCATGGA 59.298 55.000 21.47 0.00 40.96 3.41
2089 2178 0.999712 ACCTTTACCCCACCATGGAG 59.000 55.000 21.47 11.19 40.96 3.86
2090 2179 0.999712 CCTTTACCCCACCATGGAGT 59.000 55.000 21.47 12.32 40.96 3.85
2091 2180 1.340991 CCTTTACCCCACCATGGAGTG 60.341 57.143 21.47 7.12 40.96 3.51
2092 2181 1.354368 CTTTACCCCACCATGGAGTGT 59.646 52.381 21.47 12.43 40.96 3.55
2093 2182 0.988832 TTACCCCACCATGGAGTGTC 59.011 55.000 21.47 0.00 40.96 3.67
2094 2183 1.261938 TACCCCACCATGGAGTGTCG 61.262 60.000 21.47 2.73 40.96 4.35
2095 2184 2.592993 CCCCACCATGGAGTGTCGT 61.593 63.158 21.47 0.00 40.96 4.34
2096 2185 1.375908 CCCACCATGGAGTGTCGTG 60.376 63.158 21.47 3.74 40.96 4.35
2097 2186 2.034879 CCACCATGGAGTGTCGTGC 61.035 63.158 21.47 0.00 40.96 5.34
2098 2187 1.004560 CACCATGGAGTGTCGTGCT 60.005 57.895 21.47 0.00 32.89 4.40
2099 2188 1.004560 ACCATGGAGTGTCGTGCTG 60.005 57.895 21.47 0.00 0.00 4.41
2100 2189 2.393768 CCATGGAGTGTCGTGCTGC 61.394 63.158 5.56 0.00 0.00 5.25
2101 2190 1.375140 CATGGAGTGTCGTGCTGCT 60.375 57.895 0.00 0.00 0.00 4.24
2102 2191 0.952497 CATGGAGTGTCGTGCTGCTT 60.952 55.000 0.00 0.00 0.00 3.91
2103 2192 0.671781 ATGGAGTGTCGTGCTGCTTC 60.672 55.000 0.00 0.00 0.00 3.86
2104 2193 2.029844 GGAGTGTCGTGCTGCTTCC 61.030 63.158 0.00 0.00 0.00 3.46
2105 2194 1.300931 GAGTGTCGTGCTGCTTCCA 60.301 57.895 0.00 0.00 0.00 3.53
2106 2195 1.560860 GAGTGTCGTGCTGCTTCCAC 61.561 60.000 0.00 2.93 0.00 4.02
2107 2196 2.280797 TGTCGTGCTGCTTCCACC 60.281 61.111 0.00 0.00 0.00 4.61
2108 2197 3.050275 GTCGTGCTGCTTCCACCC 61.050 66.667 0.00 0.00 0.00 4.61
2109 2198 3.241530 TCGTGCTGCTTCCACCCT 61.242 61.111 0.00 0.00 0.00 4.34
2110 2199 2.743928 CGTGCTGCTTCCACCCTC 60.744 66.667 0.00 0.00 0.00 4.30
2111 2200 2.360475 GTGCTGCTTCCACCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
2112 2201 3.650950 TGCTGCTTCCACCCTCCC 61.651 66.667 0.00 0.00 0.00 4.30
2113 2202 4.432741 GCTGCTTCCACCCTCCCC 62.433 72.222 0.00 0.00 0.00 4.81
2114 2203 3.732849 CTGCTTCCACCCTCCCCC 61.733 72.222 0.00 0.00 0.00 5.40
2115 2204 4.608514 TGCTTCCACCCTCCCCCA 62.609 66.667 0.00 0.00 0.00 4.96
2116 2205 4.048470 GCTTCCACCCTCCCCCAC 62.048 72.222 0.00 0.00 0.00 4.61
2117 2206 3.717294 CTTCCACCCTCCCCCACG 61.717 72.222 0.00 0.00 0.00 4.94
2121 2210 4.489771 CACCCTCCCCCACGCATC 62.490 72.222 0.00 0.00 0.00 3.91
2122 2211 4.741239 ACCCTCCCCCACGCATCT 62.741 66.667 0.00 0.00 0.00 2.90
2123 2212 3.866582 CCCTCCCCCACGCATCTC 61.867 72.222 0.00 0.00 0.00 2.75
2124 2213 2.765807 CCTCCCCCACGCATCTCT 60.766 66.667 0.00 0.00 0.00 3.10
2125 2214 2.370445 CCTCCCCCACGCATCTCTT 61.370 63.158 0.00 0.00 0.00 2.85
2126 2215 1.144936 CTCCCCCACGCATCTCTTC 59.855 63.158 0.00 0.00 0.00 2.87
2127 2216 2.190578 CCCCCACGCATCTCTTCC 59.809 66.667 0.00 0.00 0.00 3.46
2128 2217 2.190578 CCCCACGCATCTCTTCCC 59.809 66.667 0.00 0.00 0.00 3.97
2129 2218 2.669133 CCCCACGCATCTCTTCCCA 61.669 63.158 0.00 0.00 0.00 4.37
2130 2219 1.153289 CCCACGCATCTCTTCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
2131 2220 1.817099 CCACGCATCTCTTCCCAGC 60.817 63.158 0.00 0.00 0.00 4.85
2132 2221 1.078918 CACGCATCTCTTCCCAGCA 60.079 57.895 0.00 0.00 0.00 4.41
2133 2222 0.674581 CACGCATCTCTTCCCAGCAA 60.675 55.000 0.00 0.00 0.00 3.91
2134 2223 0.674895 ACGCATCTCTTCCCAGCAAC 60.675 55.000 0.00 0.00 0.00 4.17
2135 2224 0.392193 CGCATCTCTTCCCAGCAACT 60.392 55.000 0.00 0.00 0.00 3.16
2136 2225 1.831580 GCATCTCTTCCCAGCAACTT 58.168 50.000 0.00 0.00 0.00 2.66
2137 2226 1.471684 GCATCTCTTCCCAGCAACTTG 59.528 52.381 0.00 0.00 0.00 3.16
2138 2227 2.877300 GCATCTCTTCCCAGCAACTTGA 60.877 50.000 0.00 0.00 0.00 3.02
2139 2228 3.618351 CATCTCTTCCCAGCAACTTGAT 58.382 45.455 0.00 0.00 0.00 2.57
2140 2229 4.774124 CATCTCTTCCCAGCAACTTGATA 58.226 43.478 0.00 0.00 0.00 2.15
2141 2230 4.207891 TCTCTTCCCAGCAACTTGATAC 57.792 45.455 0.00 0.00 0.00 2.24
2142 2231 3.840666 TCTCTTCCCAGCAACTTGATACT 59.159 43.478 0.00 0.00 0.00 2.12
2143 2232 5.023452 TCTCTTCCCAGCAACTTGATACTA 58.977 41.667 0.00 0.00 0.00 1.82
2144 2233 5.086104 TCTTCCCAGCAACTTGATACTAC 57.914 43.478 0.00 0.00 0.00 2.73
2145 2234 4.530553 TCTTCCCAGCAACTTGATACTACA 59.469 41.667 0.00 0.00 0.00 2.74
2146 2235 4.901197 TCCCAGCAACTTGATACTACAA 57.099 40.909 0.00 0.00 0.00 2.41
2155 2244 4.946478 CTTGATACTACAAGGAGGGAGG 57.054 50.000 0.00 0.00 42.17 4.30
2156 2245 3.330126 TGATACTACAAGGAGGGAGGG 57.670 52.381 0.00 0.00 0.00 4.30
2157 2246 2.090719 TGATACTACAAGGAGGGAGGGG 60.091 54.545 0.00 0.00 0.00 4.79
2158 2247 1.702699 TACTACAAGGAGGGAGGGGA 58.297 55.000 0.00 0.00 0.00 4.81
2159 2248 0.340208 ACTACAAGGAGGGAGGGGAG 59.660 60.000 0.00 0.00 0.00 4.30
2160 2249 0.399233 CTACAAGGAGGGAGGGGAGG 60.399 65.000 0.00 0.00 0.00 4.30
2161 2250 1.898190 TACAAGGAGGGAGGGGAGGG 61.898 65.000 0.00 0.00 0.00 4.30
2162 2251 4.439901 AAGGAGGGAGGGGAGGGC 62.440 72.222 0.00 0.00 0.00 5.19
2168 2257 4.741239 GGAGGGGAGGGCTGGTCA 62.741 72.222 0.00 0.00 0.00 4.02
2169 2258 3.086600 GAGGGGAGGGCTGGTCAG 61.087 72.222 0.00 0.00 0.00 3.51
2170 2259 3.933542 GAGGGGAGGGCTGGTCAGT 62.934 68.421 0.00 0.00 0.00 3.41
2171 2260 2.040606 GGGGAGGGCTGGTCAGTA 59.959 66.667 0.00 0.00 0.00 2.74
2172 2261 2.066999 GGGGAGGGCTGGTCAGTAG 61.067 68.421 0.00 0.00 0.00 2.57
2173 2262 1.001760 GGGAGGGCTGGTCAGTAGA 59.998 63.158 0.00 0.00 0.00 2.59
2174 2263 1.331399 GGGAGGGCTGGTCAGTAGAC 61.331 65.000 0.00 0.00 44.21 2.59
2175 2264 1.668101 GGAGGGCTGGTCAGTAGACG 61.668 65.000 0.00 0.00 45.92 4.18
2176 2265 0.680280 GAGGGCTGGTCAGTAGACGA 60.680 60.000 0.00 0.00 45.92 4.20
2177 2266 0.251653 AGGGCTGGTCAGTAGACGAA 60.252 55.000 0.00 0.00 45.92 3.85
2178 2267 0.824759 GGGCTGGTCAGTAGACGAAT 59.175 55.000 0.00 0.00 45.92 3.34
2179 2268 2.029623 GGGCTGGTCAGTAGACGAATA 58.970 52.381 0.00 0.00 45.92 1.75
2180 2269 2.223758 GGGCTGGTCAGTAGACGAATAC 60.224 54.545 0.00 0.00 45.92 1.89
2181 2270 2.541178 GGCTGGTCAGTAGACGAATACG 60.541 54.545 0.00 0.00 45.92 3.06
2182 2271 2.717530 CTGGTCAGTAGACGAATACGC 58.282 52.381 0.00 0.00 45.92 4.42
2183 2272 1.063027 TGGTCAGTAGACGAATACGCG 59.937 52.381 3.53 3.53 45.92 6.01
2185 2274 2.099621 GTCAGTAGACGAATACGCGTG 58.900 52.381 24.59 7.50 45.72 5.34
2186 2275 1.063027 TCAGTAGACGAATACGCGTGG 59.937 52.381 24.59 10.89 45.72 4.94
2187 2276 1.063027 CAGTAGACGAATACGCGTGGA 59.937 52.381 24.59 2.06 45.72 4.02
2188 2277 1.063174 AGTAGACGAATACGCGTGGAC 59.937 52.381 24.59 11.47 45.72 4.02
2189 2278 0.026674 TAGACGAATACGCGTGGACG 59.973 55.000 24.59 24.01 45.72 4.79
2203 2292 3.793144 GACGCGGCCTGCTTTGAG 61.793 66.667 12.47 4.47 43.27 3.02
2207 2296 3.793144 CGGCCTGCTTTGAGCGAC 61.793 66.667 0.00 0.00 46.26 5.19
2208 2297 3.793144 GGCCTGCTTTGAGCGACG 61.793 66.667 0.00 0.00 46.26 5.12
2209 2298 2.738521 GCCTGCTTTGAGCGACGA 60.739 61.111 0.00 0.00 46.26 4.20
2210 2299 2.734673 GCCTGCTTTGAGCGACGAG 61.735 63.158 0.00 0.00 46.26 4.18
2211 2300 2.097038 CCTGCTTTGAGCGACGAGG 61.097 63.158 0.00 0.00 46.26 4.63
2212 2301 1.080501 CTGCTTTGAGCGACGAGGA 60.081 57.895 0.00 0.00 46.26 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.444056 ACGAAATTTGGATTCAGCAAAACG 59.556 37.500 7.24 0.00 0.00 3.60
1 2 5.905480 ACGAAATTTGGATTCAGCAAAAC 57.095 34.783 7.24 0.00 0.00 2.43
3 4 6.811170 GGAATACGAAATTTGGATTCAGCAAA 59.189 34.615 17.47 0.00 0.00 3.68
5 6 5.652014 AGGAATACGAAATTTGGATTCAGCA 59.348 36.000 17.47 0.00 0.00 4.41
6 7 6.136541 AGGAATACGAAATTTGGATTCAGC 57.863 37.500 17.47 4.05 0.00 4.26
49 50 4.210331 CATGCCTACAAAGCCCTCTAAAT 58.790 43.478 0.00 0.00 0.00 1.40
72 73 7.255942 AGAAGGTGTTATTCTTCCAAACATTGG 60.256 37.037 2.65 2.65 39.61 3.16
113 114 4.990526 ACCATCATTTCTCTTCAAGGTGT 58.009 39.130 0.00 0.00 0.00 4.16
129 130 5.186992 TGCAGTTAGTTAGAGCTTACCATCA 59.813 40.000 0.00 0.00 0.00 3.07
159 160 5.834169 TGCAATGCACATAAGTTGGATATG 58.166 37.500 2.72 0.00 36.92 1.78
200 201 4.504132 CCTAGAAGGCGTCTGCAC 57.496 61.111 13.41 0.00 45.35 4.57
285 287 0.036732 TTCCATCTGCTTTGGCTCGT 59.963 50.000 0.00 0.00 39.59 4.18
288 290 2.376109 CATCTTCCATCTGCTTTGGCT 58.624 47.619 0.00 0.00 39.59 4.75
292 294 1.287146 AGGGCATCTTCCATCTGCTTT 59.713 47.619 0.00 0.00 36.18 3.51
299 301 0.399454 CGATGGAGGGCATCTTCCAT 59.601 55.000 9.34 9.34 44.76 3.41
378 380 3.031013 TCAGGTGTTGTTGTCTCTCTCA 58.969 45.455 0.00 0.00 0.00 3.27
409 411 2.604686 TCTCTCTGCTTGCCCCGT 60.605 61.111 0.00 0.00 0.00 5.28
450 452 1.376037 CGGCCCCTTCTGTGACTTC 60.376 63.158 0.00 0.00 0.00 3.01
459 461 2.269241 CCTCACTTCGGCCCCTTC 59.731 66.667 0.00 0.00 0.00 3.46
466 468 0.319555 TTTCGCAGTCCTCACTTCGG 60.320 55.000 0.00 0.00 39.47 4.30
475 477 1.000163 TGTCACTCTCTTTCGCAGTCC 60.000 52.381 0.00 0.00 0.00 3.85
508 510 2.416162 CGAAGAGAGTGACTAGTTGGGC 60.416 54.545 0.00 0.00 0.00 5.36
542 544 0.986019 TATTCCGTGGATGGCTGGGT 60.986 55.000 0.00 0.00 0.00 4.51
557 560 0.963355 TTGGCCCTTGCGTGGTATTC 60.963 55.000 0.00 0.00 38.85 1.75
559 562 1.677633 GTTGGCCCTTGCGTGGTAT 60.678 57.895 0.00 0.00 38.85 2.73
560 563 2.281900 GTTGGCCCTTGCGTGGTA 60.282 61.111 0.00 0.00 38.85 3.25
561 564 4.514585 TGTTGGCCCTTGCGTGGT 62.515 61.111 0.00 0.00 38.85 4.16
603 606 1.598685 CGTAGTTTTGGGTGGCCGT 60.599 57.895 0.00 0.00 0.00 5.68
638 641 0.540830 TTGGTTTTAGTGGGGCGCAT 60.541 50.000 10.83 0.00 0.00 4.73
707 710 3.296709 CTGTGGAAGTCGGGGTCGG 62.297 68.421 0.00 0.00 36.95 4.79
723 726 5.119279 CACGTTCTACCATTTTGTCTCTCTG 59.881 44.000 0.00 0.00 0.00 3.35
794 798 0.527600 CGATTGATCCGAGCCGTTGA 60.528 55.000 0.00 0.00 0.00 3.18
822 826 0.679960 GGAACCCCCAACCATTCGAG 60.680 60.000 0.00 0.00 34.14 4.04
831 835 2.108601 ACGTAAGAAATGGAACCCCCAA 59.891 45.455 0.00 0.00 45.78 4.12
838 872 7.747155 TTCAATTACCACGTAAGAAATGGAA 57.253 32.000 0.00 0.00 43.62 3.53
849 883 3.761218 TCATGCCAATTCAATTACCACGT 59.239 39.130 0.00 0.00 0.00 4.49
852 922 6.339730 GTCAATCATGCCAATTCAATTACCA 58.660 36.000 0.00 0.00 0.00 3.25
861 931 3.703052 GGAGAAGGTCAATCATGCCAATT 59.297 43.478 0.00 0.00 0.00 2.32
913 983 2.027625 GGGTGCGTCTCTGTTTCGG 61.028 63.158 0.00 0.00 0.00 4.30
1555 1643 1.663161 GCAAGGACTAAACGCAGCAAC 60.663 52.381 0.00 0.00 0.00 4.17
1598 1686 6.279123 TGTCAACTGATTCAGAGATCATAGC 58.721 40.000 20.33 5.62 35.62 2.97
1606 1694 5.811613 GGATCTTCTGTCAACTGATTCAGAG 59.188 44.000 20.33 11.72 38.03 3.35
1617 1705 2.466846 TCCCGATGGATCTTCTGTCAA 58.533 47.619 0.00 0.00 35.03 3.18
1683 1771 9.967451 TTCCAAGTATGTGAAGGTGAAAATATA 57.033 29.630 0.00 0.00 0.00 0.86
1757 1846 5.034852 TGACGATCAATCATATTGGTGGT 57.965 39.130 0.87 0.87 0.00 4.16
1776 1865 5.886960 ACAATTTGCTAGAGTTGGATGAC 57.113 39.130 0.00 0.00 0.00 3.06
1852 1941 5.761165 TCCAAACGTTTCCCTTAAAGAAG 57.239 39.130 11.37 0.00 0.00 2.85
1853 1942 6.513720 CGAATCCAAACGTTTCCCTTAAAGAA 60.514 38.462 11.37 0.00 0.00 2.52
1854 1943 5.049267 CGAATCCAAACGTTTCCCTTAAAGA 60.049 40.000 11.37 0.00 0.00 2.52
1855 1944 5.151389 CGAATCCAAACGTTTCCCTTAAAG 58.849 41.667 11.37 0.00 0.00 1.85
1856 1945 4.023021 CCGAATCCAAACGTTTCCCTTAAA 60.023 41.667 11.37 0.00 0.00 1.52
1857 1946 3.502979 CCGAATCCAAACGTTTCCCTTAA 59.497 43.478 11.37 0.00 0.00 1.85
1858 1947 3.075884 CCGAATCCAAACGTTTCCCTTA 58.924 45.455 11.37 0.00 0.00 2.69
1859 1948 1.883926 CCGAATCCAAACGTTTCCCTT 59.116 47.619 11.37 4.43 0.00 3.95
1860 1949 1.530323 CCGAATCCAAACGTTTCCCT 58.470 50.000 11.37 0.00 0.00 4.20
1861 1950 0.109458 GCCGAATCCAAACGTTTCCC 60.109 55.000 11.37 0.00 0.00 3.97
1862 1951 0.453782 CGCCGAATCCAAACGTTTCC 60.454 55.000 11.37 0.00 0.00 3.13
1863 1952 1.063412 GCGCCGAATCCAAACGTTTC 61.063 55.000 11.37 0.00 0.00 2.78
1864 1953 1.081708 GCGCCGAATCCAAACGTTT 60.082 52.632 7.96 7.96 0.00 3.60
1865 1954 2.559330 GCGCCGAATCCAAACGTT 59.441 55.556 0.00 0.00 0.00 3.99
1866 1955 3.784412 CGCGCCGAATCCAAACGT 61.784 61.111 0.00 0.00 0.00 3.99
1868 1957 4.829518 GGCGCGCCGAATCCAAAC 62.830 66.667 37.24 7.78 0.00 2.93
1883 1972 3.434319 CATGTGACCGGTGCTGGC 61.434 66.667 14.63 0.00 0.00 4.85
1884 1973 2.032528 ACATGTGACCGGTGCTGG 59.967 61.111 14.63 0.00 0.00 4.85
1885 1974 1.293963 CTCACATGTGACCGGTGCTG 61.294 60.000 24.56 8.66 35.46 4.41
1886 1975 1.004560 CTCACATGTGACCGGTGCT 60.005 57.895 24.56 0.00 35.46 4.40
1887 1976 2.034879 CCTCACATGTGACCGGTGC 61.035 63.158 24.56 5.08 35.46 5.01
1888 1977 2.034879 GCCTCACATGTGACCGGTG 61.035 63.158 26.44 17.00 35.46 4.94
1889 1978 2.347490 GCCTCACATGTGACCGGT 59.653 61.111 26.44 6.92 35.46 5.28
1890 1979 2.815211 CGCCTCACATGTGACCGG 60.815 66.667 24.56 23.95 35.46 5.28
1891 1980 1.667830 AACGCCTCACATGTGACCG 60.668 57.895 28.72 28.72 35.46 4.79
1892 1981 1.577328 CCAACGCCTCACATGTGACC 61.577 60.000 24.56 16.39 35.46 4.02
1893 1982 0.602638 TCCAACGCCTCACATGTGAC 60.603 55.000 24.56 14.72 35.46 3.67
1894 1983 0.324614 ATCCAACGCCTCACATGTGA 59.675 50.000 26.33 26.33 38.06 3.58
1895 1984 0.729116 GATCCAACGCCTCACATGTG 59.271 55.000 20.18 20.18 0.00 3.21
1896 1985 0.615331 AGATCCAACGCCTCACATGT 59.385 50.000 0.00 0.00 0.00 3.21
1897 1986 1.012086 CAGATCCAACGCCTCACATG 58.988 55.000 0.00 0.00 0.00 3.21
1898 1987 0.904649 TCAGATCCAACGCCTCACAT 59.095 50.000 0.00 0.00 0.00 3.21
1899 1988 0.037326 GTCAGATCCAACGCCTCACA 60.037 55.000 0.00 0.00 0.00 3.58
1900 1989 1.078759 CGTCAGATCCAACGCCTCAC 61.079 60.000 4.74 0.00 31.48 3.51
1901 1990 1.215382 CGTCAGATCCAACGCCTCA 59.785 57.895 4.74 0.00 31.48 3.86
1902 1991 4.094684 CGTCAGATCCAACGCCTC 57.905 61.111 4.74 0.00 31.48 4.70
1906 1995 1.482621 CGGATGCGTCAGATCCAACG 61.483 60.000 8.47 11.92 39.65 4.10
1907 1996 0.460284 ACGGATGCGTCAGATCCAAC 60.460 55.000 6.39 0.00 39.65 3.77
1908 1997 0.249120 AACGGATGCGTCAGATCCAA 59.751 50.000 14.18 0.00 39.65 3.53
1909 1998 0.460109 CAACGGATGCGTCAGATCCA 60.460 55.000 14.18 0.00 39.65 3.41
1910 1999 0.460284 ACAACGGATGCGTCAGATCC 60.460 55.000 14.18 1.34 36.73 3.36
1911 2000 1.359848 AACAACGGATGCGTCAGATC 58.640 50.000 14.18 0.00 0.00 2.75
1912 2001 1.808411 AAACAACGGATGCGTCAGAT 58.192 45.000 14.18 0.56 0.00 2.90
1913 2002 1.588674 AAAACAACGGATGCGTCAGA 58.411 45.000 14.18 0.00 0.00 3.27
1914 2003 3.740044 ATAAAACAACGGATGCGTCAG 57.260 42.857 14.18 11.64 0.00 3.51
1915 2004 5.220700 GGAATATAAAACAACGGATGCGTCA 60.221 40.000 14.18 0.00 0.00 4.35
1916 2005 5.202640 GGAATATAAAACAACGGATGCGTC 58.797 41.667 14.18 0.00 0.00 5.19
1917 2006 4.260456 CGGAATATAAAACAACGGATGCGT 60.260 41.667 6.39 6.39 0.00 5.24
1918 2007 4.208355 CGGAATATAAAACAACGGATGCG 58.792 43.478 4.58 4.58 0.00 4.73
1919 2008 5.164606 ACGGAATATAAAACAACGGATGC 57.835 39.130 0.00 0.00 0.00 3.91
1920 2009 5.277634 GGGACGGAATATAAAACAACGGATG 60.278 44.000 0.00 0.00 0.00 3.51
1921 2010 4.818005 GGGACGGAATATAAAACAACGGAT 59.182 41.667 0.00 0.00 0.00 4.18
1922 2011 4.190772 GGGACGGAATATAAAACAACGGA 58.809 43.478 0.00 0.00 0.00 4.69
1923 2012 4.541085 GGGACGGAATATAAAACAACGG 57.459 45.455 0.00 0.00 0.00 4.44
1940 2029 2.265904 GGGACAAGGCAAACGGGAC 61.266 63.158 0.00 0.00 0.00 4.46
1941 2030 2.002018 AAGGGACAAGGCAAACGGGA 62.002 55.000 0.00 0.00 0.00 5.14
1942 2031 1.112916 AAAGGGACAAGGCAAACGGG 61.113 55.000 0.00 0.00 0.00 5.28
1943 2032 0.313987 GAAAGGGACAAGGCAAACGG 59.686 55.000 0.00 0.00 0.00 4.44
1944 2033 0.313987 GGAAAGGGACAAGGCAAACG 59.686 55.000 0.00 0.00 0.00 3.60
1945 2034 0.679505 GGGAAAGGGACAAGGCAAAC 59.320 55.000 0.00 0.00 0.00 2.93
1946 2035 0.560688 AGGGAAAGGGACAAGGCAAA 59.439 50.000 0.00 0.00 0.00 3.68
1947 2036 0.112412 GAGGGAAAGGGACAAGGCAA 59.888 55.000 0.00 0.00 0.00 4.52
1948 2037 0.772124 AGAGGGAAAGGGACAAGGCA 60.772 55.000 0.00 0.00 0.00 4.75
1949 2038 0.322906 CAGAGGGAAAGGGACAAGGC 60.323 60.000 0.00 0.00 0.00 4.35
1950 2039 0.329596 CCAGAGGGAAAGGGACAAGG 59.670 60.000 0.00 0.00 35.59 3.61
1951 2040 1.362224 TCCAGAGGGAAAGGGACAAG 58.638 55.000 0.00 0.00 41.32 3.16
1952 2041 3.589232 TCCAGAGGGAAAGGGACAA 57.411 52.632 0.00 0.00 41.32 3.18
1963 2052 3.406595 GAATGGGCGGGTCCAGAGG 62.407 68.421 0.00 0.00 40.56 3.69
1964 2053 2.190578 GAATGGGCGGGTCCAGAG 59.809 66.667 0.00 0.00 40.56 3.35
1965 2054 3.781307 CGAATGGGCGGGTCCAGA 61.781 66.667 0.00 0.00 40.56 3.86
1966 2055 3.622060 AACGAATGGGCGGGTCCAG 62.622 63.158 0.00 0.00 40.56 3.86
1967 2056 3.615509 GAACGAATGGGCGGGTCCA 62.616 63.158 0.00 0.00 41.60 4.02
1968 2057 2.822701 GAACGAATGGGCGGGTCC 60.823 66.667 0.00 0.00 35.12 4.46
1969 2058 2.814913 AAGGAACGAATGGGCGGGTC 62.815 60.000 0.00 0.00 35.12 4.46
1970 2059 2.420466 AAAGGAACGAATGGGCGGGT 62.420 55.000 0.00 0.00 35.12 5.28
1971 2060 1.654023 GAAAGGAACGAATGGGCGGG 61.654 60.000 0.00 0.00 35.12 6.13
1972 2061 0.676782 AGAAAGGAACGAATGGGCGG 60.677 55.000 0.00 0.00 35.12 6.13
1973 2062 0.727398 GAGAAAGGAACGAATGGGCG 59.273 55.000 0.00 0.00 37.29 6.13
1974 2063 1.095600 GGAGAAAGGAACGAATGGGC 58.904 55.000 0.00 0.00 0.00 5.36
1975 2064 1.369625 CGGAGAAAGGAACGAATGGG 58.630 55.000 0.00 0.00 0.00 4.00
1976 2065 0.727398 GCGGAGAAAGGAACGAATGG 59.273 55.000 0.00 0.00 0.00 3.16
1977 2066 1.128692 GTGCGGAGAAAGGAACGAATG 59.871 52.381 0.00 0.00 0.00 2.67
1978 2067 1.270625 TGTGCGGAGAAAGGAACGAAT 60.271 47.619 0.00 0.00 0.00 3.34
1979 2068 0.105224 TGTGCGGAGAAAGGAACGAA 59.895 50.000 0.00 0.00 0.00 3.85
1980 2069 0.599204 GTGTGCGGAGAAAGGAACGA 60.599 55.000 0.00 0.00 0.00 3.85
1981 2070 0.878523 TGTGTGCGGAGAAAGGAACG 60.879 55.000 0.00 0.00 0.00 3.95
1982 2071 1.523758 ATGTGTGCGGAGAAAGGAAC 58.476 50.000 0.00 0.00 0.00 3.62
1983 2072 1.879380 CAATGTGTGCGGAGAAAGGAA 59.121 47.619 0.00 0.00 0.00 3.36
1984 2073 1.202758 ACAATGTGTGCGGAGAAAGGA 60.203 47.619 0.00 0.00 0.00 3.36
1985 2074 1.197721 GACAATGTGTGCGGAGAAAGG 59.802 52.381 0.00 0.00 0.00 3.11
1986 2075 2.146342 AGACAATGTGTGCGGAGAAAG 58.854 47.619 0.00 0.00 0.00 2.62
1987 2076 2.254546 AGACAATGTGTGCGGAGAAA 57.745 45.000 0.00 0.00 0.00 2.52
1988 2077 2.143122 GAAGACAATGTGTGCGGAGAA 58.857 47.619 0.00 0.00 0.00 2.87
1989 2078 1.344438 AGAAGACAATGTGTGCGGAGA 59.656 47.619 0.00 0.00 0.00 3.71
1990 2079 1.800805 AGAAGACAATGTGTGCGGAG 58.199 50.000 0.00 0.00 0.00 4.63
1991 2080 2.611971 GGTAGAAGACAATGTGTGCGGA 60.612 50.000 0.00 0.00 0.00 5.54
1992 2081 1.732259 GGTAGAAGACAATGTGTGCGG 59.268 52.381 0.00 0.00 0.00 5.69
1993 2082 2.668457 GAGGTAGAAGACAATGTGTGCG 59.332 50.000 0.00 0.00 0.00 5.34
1994 2083 2.668457 CGAGGTAGAAGACAATGTGTGC 59.332 50.000 0.00 0.00 0.00 4.57
1995 2084 2.668457 GCGAGGTAGAAGACAATGTGTG 59.332 50.000 0.00 0.00 0.00 3.82
1996 2085 2.671351 CGCGAGGTAGAAGACAATGTGT 60.671 50.000 0.00 0.00 0.00 3.72
1997 2086 1.920574 CGCGAGGTAGAAGACAATGTG 59.079 52.381 0.00 0.00 0.00 3.21
1998 2087 1.736032 GCGCGAGGTAGAAGACAATGT 60.736 52.381 12.10 0.00 0.00 2.71
1999 2088 0.924090 GCGCGAGGTAGAAGACAATG 59.076 55.000 12.10 0.00 0.00 2.82
2000 2089 0.525668 CGCGCGAGGTAGAAGACAAT 60.526 55.000 28.94 0.00 0.00 2.71
2001 2090 1.154093 CGCGCGAGGTAGAAGACAA 60.154 57.895 28.94 0.00 0.00 3.18
2002 2091 1.374343 ATCGCGCGAGGTAGAAGACA 61.374 55.000 36.99 10.51 0.00 3.41
2003 2092 0.930742 CATCGCGCGAGGTAGAAGAC 60.931 60.000 36.99 0.00 0.00 3.01
2004 2093 1.355563 CATCGCGCGAGGTAGAAGA 59.644 57.895 36.99 11.94 0.00 2.87
2005 2094 2.296480 GCATCGCGCGAGGTAGAAG 61.296 63.158 39.38 22.06 0.00 2.85
2006 2095 2.278596 GCATCGCGCGAGGTAGAA 60.279 61.111 39.38 16.89 0.00 2.10
2007 2096 3.469754 CTGCATCGCGCGAGGTAGA 62.470 63.158 44.48 27.96 46.97 2.59
2008 2097 3.026879 CTGCATCGCGCGAGGTAG 61.027 66.667 38.82 38.82 46.97 3.18
2016 2105 4.607606 CATGGCTGCTGCATCGCG 62.608 66.667 17.89 0.00 41.91 5.87
2017 2106 4.266070 CCATGGCTGCTGCATCGC 62.266 66.667 17.89 3.74 41.91 4.58
2018 2107 0.604511 TATCCATGGCTGCTGCATCG 60.605 55.000 17.89 4.30 41.91 3.84
2019 2108 1.268899 GTTATCCATGGCTGCTGCATC 59.731 52.381 17.89 0.00 41.91 3.91
2020 2109 1.325355 GTTATCCATGGCTGCTGCAT 58.675 50.000 17.89 6.33 41.91 3.96
2021 2110 0.752743 GGTTATCCATGGCTGCTGCA 60.753 55.000 17.89 0.88 41.91 4.41
2022 2111 0.466922 AGGTTATCCATGGCTGCTGC 60.467 55.000 6.96 7.10 35.89 5.25
2023 2112 1.142465 AGAGGTTATCCATGGCTGCTG 59.858 52.381 6.96 0.00 35.89 4.41
2024 2113 1.419387 GAGAGGTTATCCATGGCTGCT 59.581 52.381 6.96 0.00 35.89 4.24
2025 2114 1.875576 CGAGAGGTTATCCATGGCTGC 60.876 57.143 6.96 0.00 35.89 5.25
2026 2115 2.160822 CGAGAGGTTATCCATGGCTG 57.839 55.000 6.96 0.00 35.89 4.85
2040 2129 1.144936 GGAGATGGTTGGCCGAGAG 59.855 63.158 0.00 0.00 37.67 3.20
2041 2130 2.367202 GGGAGATGGTTGGCCGAGA 61.367 63.158 0.00 0.00 37.67 4.04
2042 2131 1.987807 ATGGGAGATGGTTGGCCGAG 61.988 60.000 0.00 0.00 37.67 4.63
2043 2132 2.000701 ATGGGAGATGGTTGGCCGA 61.001 57.895 0.00 0.00 37.67 5.54
2044 2133 1.825191 CATGGGAGATGGTTGGCCG 60.825 63.158 0.00 0.00 37.67 6.13
2045 2134 2.129785 GCATGGGAGATGGTTGGCC 61.130 63.158 0.00 0.00 0.00 5.36
2046 2135 2.129785 GGCATGGGAGATGGTTGGC 61.130 63.158 0.00 0.00 0.00 4.52
2047 2136 1.456331 GGGCATGGGAGATGGTTGG 60.456 63.158 0.00 0.00 0.00 3.77
2048 2137 0.105862 ATGGGCATGGGAGATGGTTG 60.106 55.000 0.00 0.00 0.00 3.77
2049 2138 0.186873 GATGGGCATGGGAGATGGTT 59.813 55.000 0.00 0.00 0.00 3.67
2050 2139 1.723128 GGATGGGCATGGGAGATGGT 61.723 60.000 0.00 0.00 0.00 3.55
2051 2140 1.076192 GGATGGGCATGGGAGATGG 59.924 63.158 0.00 0.00 0.00 3.51
2052 2141 0.538977 GTGGATGGGCATGGGAGATG 60.539 60.000 0.00 0.00 0.00 2.90
2053 2142 1.723128 GGTGGATGGGCATGGGAGAT 61.723 60.000 0.00 0.00 0.00 2.75
2054 2143 2.386100 GGTGGATGGGCATGGGAGA 61.386 63.158 0.00 0.00 0.00 3.71
2055 2144 1.941403 AAGGTGGATGGGCATGGGAG 61.941 60.000 0.00 0.00 0.00 4.30
2056 2145 1.517538 AAAGGTGGATGGGCATGGGA 61.518 55.000 0.00 0.00 0.00 4.37
2057 2146 0.261402 TAAAGGTGGATGGGCATGGG 59.739 55.000 0.00 0.00 0.00 4.00
2058 2147 1.402787 GTAAAGGTGGATGGGCATGG 58.597 55.000 0.00 0.00 0.00 3.66
2059 2148 1.402787 GGTAAAGGTGGATGGGCATG 58.597 55.000 0.00 0.00 0.00 4.06
2060 2149 0.261696 GGGTAAAGGTGGATGGGCAT 59.738 55.000 0.00 0.00 0.00 4.40
2061 2150 1.694856 GGGTAAAGGTGGATGGGCA 59.305 57.895 0.00 0.00 0.00 5.36
2062 2151 1.076265 GGGGTAAAGGTGGATGGGC 60.076 63.158 0.00 0.00 0.00 5.36
2063 2152 0.033503 GTGGGGTAAAGGTGGATGGG 60.034 60.000 0.00 0.00 0.00 4.00
2064 2153 0.033503 GGTGGGGTAAAGGTGGATGG 60.034 60.000 0.00 0.00 0.00 3.51
2065 2154 0.701731 TGGTGGGGTAAAGGTGGATG 59.298 55.000 0.00 0.00 0.00 3.51
2066 2155 1.287739 CATGGTGGGGTAAAGGTGGAT 59.712 52.381 0.00 0.00 0.00 3.41
2067 2156 0.701731 CATGGTGGGGTAAAGGTGGA 59.298 55.000 0.00 0.00 0.00 4.02
2068 2157 0.324275 CCATGGTGGGGTAAAGGTGG 60.324 60.000 2.57 0.00 32.67 4.61
2069 2158 0.701731 TCCATGGTGGGGTAAAGGTG 59.298 55.000 12.58 0.00 38.32 4.00
2070 2159 0.999712 CTCCATGGTGGGGTAAAGGT 59.000 55.000 12.58 0.00 38.32 3.50
2071 2160 3.903208 CTCCATGGTGGGGTAAAGG 57.097 57.895 12.58 0.00 38.32 3.11
2077 2166 2.268920 CGACACTCCATGGTGGGG 59.731 66.667 19.85 13.53 45.84 4.96
2078 2167 1.375908 CACGACACTCCATGGTGGG 60.376 63.158 14.57 14.57 41.09 4.61
2079 2168 2.034879 GCACGACACTCCATGGTGG 61.035 63.158 17.76 11.57 41.09 4.61
2080 2169 1.004560 AGCACGACACTCCATGGTG 60.005 57.895 12.58 12.42 42.34 4.17
2081 2170 1.004560 CAGCACGACACTCCATGGT 60.005 57.895 12.58 0.00 0.00 3.55
2082 2171 2.393768 GCAGCACGACACTCCATGG 61.394 63.158 4.97 4.97 0.00 3.66
2083 2172 0.952497 AAGCAGCACGACACTCCATG 60.952 55.000 0.00 0.00 0.00 3.66
2084 2173 0.671781 GAAGCAGCACGACACTCCAT 60.672 55.000 0.00 0.00 0.00 3.41
2085 2174 1.300931 GAAGCAGCACGACACTCCA 60.301 57.895 0.00 0.00 0.00 3.86
2086 2175 2.029844 GGAAGCAGCACGACACTCC 61.030 63.158 0.00 0.00 0.00 3.85
2087 2176 1.300931 TGGAAGCAGCACGACACTC 60.301 57.895 0.00 0.00 0.00 3.51
2088 2177 1.595382 GTGGAAGCAGCACGACACT 60.595 57.895 0.00 0.00 0.00 3.55
2089 2178 2.607892 GGTGGAAGCAGCACGACAC 61.608 63.158 0.00 0.00 0.00 3.67
2090 2179 2.280797 GGTGGAAGCAGCACGACA 60.281 61.111 0.00 0.00 0.00 4.35
2091 2180 3.050275 GGGTGGAAGCAGCACGAC 61.050 66.667 0.00 0.00 34.77 4.34
2092 2181 3.240134 GAGGGTGGAAGCAGCACGA 62.240 63.158 0.00 0.00 34.77 4.35
2093 2182 2.743928 GAGGGTGGAAGCAGCACG 60.744 66.667 0.00 0.00 34.77 5.34
2094 2183 2.360475 GGAGGGTGGAAGCAGCAC 60.360 66.667 0.00 0.00 34.77 4.40
2095 2184 3.650950 GGGAGGGTGGAAGCAGCA 61.651 66.667 0.00 0.00 34.77 4.41
2096 2185 4.432741 GGGGAGGGTGGAAGCAGC 62.433 72.222 0.00 0.00 34.77 5.25
2097 2186 3.732849 GGGGGAGGGTGGAAGCAG 61.733 72.222 0.00 0.00 34.77 4.24
2098 2187 4.608514 TGGGGGAGGGTGGAAGCA 62.609 66.667 0.00 0.00 34.77 3.91
2099 2188 4.048470 GTGGGGGAGGGTGGAAGC 62.048 72.222 0.00 0.00 0.00 3.86
2100 2189 3.717294 CGTGGGGGAGGGTGGAAG 61.717 72.222 0.00 0.00 0.00 3.46
2104 2193 4.489771 GATGCGTGGGGGAGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
2105 2194 4.741239 AGATGCGTGGGGGAGGGT 62.741 66.667 0.00 0.00 0.00 4.34
2106 2195 3.866582 GAGATGCGTGGGGGAGGG 61.867 72.222 0.00 0.00 0.00 4.30
2107 2196 2.317149 GAAGAGATGCGTGGGGGAGG 62.317 65.000 0.00 0.00 0.00 4.30
2108 2197 1.144936 GAAGAGATGCGTGGGGGAG 59.855 63.158 0.00 0.00 0.00 4.30
2109 2198 2.367202 GGAAGAGATGCGTGGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
2110 2199 2.190578 GGAAGAGATGCGTGGGGG 59.809 66.667 0.00 0.00 0.00 5.40
2111 2200 2.190578 GGGAAGAGATGCGTGGGG 59.809 66.667 0.00 0.00 0.00 4.96
2112 2201 1.153289 CTGGGAAGAGATGCGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
2113 2202 1.817099 GCTGGGAAGAGATGCGTGG 60.817 63.158 0.00 0.00 0.00 4.94
2114 2203 0.674581 TTGCTGGGAAGAGATGCGTG 60.675 55.000 0.00 0.00 0.00 5.34
2115 2204 0.674895 GTTGCTGGGAAGAGATGCGT 60.675 55.000 0.00 0.00 0.00 5.24
2116 2205 0.392193 AGTTGCTGGGAAGAGATGCG 60.392 55.000 0.00 0.00 0.00 4.73
2117 2206 1.471684 CAAGTTGCTGGGAAGAGATGC 59.528 52.381 0.00 0.00 0.00 3.91
2118 2207 3.063510 TCAAGTTGCTGGGAAGAGATG 57.936 47.619 0.00 0.00 0.00 2.90
2119 2208 4.472833 AGTATCAAGTTGCTGGGAAGAGAT 59.527 41.667 0.00 0.00 0.00 2.75
2120 2209 3.840666 AGTATCAAGTTGCTGGGAAGAGA 59.159 43.478 0.00 0.00 0.00 3.10
2121 2210 4.213564 AGTATCAAGTTGCTGGGAAGAG 57.786 45.455 0.00 0.00 0.00 2.85
2122 2211 4.530553 TGTAGTATCAAGTTGCTGGGAAGA 59.469 41.667 0.00 0.00 0.00 2.87
2123 2212 4.832248 TGTAGTATCAAGTTGCTGGGAAG 58.168 43.478 0.00 0.00 0.00 3.46
2124 2213 4.901197 TGTAGTATCAAGTTGCTGGGAA 57.099 40.909 0.00 0.00 0.00 3.97
2125 2214 4.323485 CCTTGTAGTATCAAGTTGCTGGGA 60.323 45.833 0.00 0.00 42.01 4.37
2126 2215 3.941483 CCTTGTAGTATCAAGTTGCTGGG 59.059 47.826 0.00 0.00 42.01 4.45
2127 2216 4.832248 TCCTTGTAGTATCAAGTTGCTGG 58.168 43.478 0.00 0.00 42.01 4.85
2128 2217 4.872691 CCTCCTTGTAGTATCAAGTTGCTG 59.127 45.833 0.00 0.00 42.01 4.41
2129 2218 4.080863 CCCTCCTTGTAGTATCAAGTTGCT 60.081 45.833 0.00 0.00 42.01 3.91
2130 2219 4.081087 TCCCTCCTTGTAGTATCAAGTTGC 60.081 45.833 0.00 0.00 42.01 4.17
2131 2220 5.395768 CCTCCCTCCTTGTAGTATCAAGTTG 60.396 48.000 0.00 0.00 42.01 3.16
2132 2221 4.717280 CCTCCCTCCTTGTAGTATCAAGTT 59.283 45.833 5.86 0.00 42.01 2.66
2133 2222 4.290942 CCTCCCTCCTTGTAGTATCAAGT 58.709 47.826 5.86 0.00 42.01 3.16
2134 2223 3.643792 CCCTCCCTCCTTGTAGTATCAAG 59.356 52.174 0.00 0.00 42.86 3.02
2135 2224 3.632645 CCCCTCCCTCCTTGTAGTATCAA 60.633 52.174 0.00 0.00 0.00 2.57
2136 2225 2.090719 CCCCTCCCTCCTTGTAGTATCA 60.091 54.545 0.00 0.00 0.00 2.15
2137 2226 2.179424 TCCCCTCCCTCCTTGTAGTATC 59.821 54.545 0.00 0.00 0.00 2.24
2138 2227 2.180308 CTCCCCTCCCTCCTTGTAGTAT 59.820 54.545 0.00 0.00 0.00 2.12
2139 2228 1.574339 CTCCCCTCCCTCCTTGTAGTA 59.426 57.143 0.00 0.00 0.00 1.82
2140 2229 0.340208 CTCCCCTCCCTCCTTGTAGT 59.660 60.000 0.00 0.00 0.00 2.73
2141 2230 0.399233 CCTCCCCTCCCTCCTTGTAG 60.399 65.000 0.00 0.00 0.00 2.74
2142 2231 1.710341 CCTCCCCTCCCTCCTTGTA 59.290 63.158 0.00 0.00 0.00 2.41
2143 2232 2.456840 CCTCCCCTCCCTCCTTGT 59.543 66.667 0.00 0.00 0.00 3.16
2144 2233 2.367512 CCCTCCCCTCCCTCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
2145 2234 4.439901 GCCCTCCCCTCCCTCCTT 62.440 72.222 0.00 0.00 0.00 3.36
2151 2240 4.741239 TGACCAGCCCTCCCCTCC 62.741 72.222 0.00 0.00 0.00 4.30
2152 2241 2.531483 TACTGACCAGCCCTCCCCTC 62.531 65.000 0.00 0.00 0.00 4.30
2153 2242 2.537714 CTACTGACCAGCCCTCCCCT 62.538 65.000 0.00 0.00 0.00 4.79
2154 2243 2.040606 TACTGACCAGCCCTCCCC 59.959 66.667 0.00 0.00 0.00 4.81
2155 2244 1.001760 TCTACTGACCAGCCCTCCC 59.998 63.158 0.00 0.00 0.00 4.30
2156 2245 1.668101 CGTCTACTGACCAGCCCTCC 61.668 65.000 0.00 0.00 39.94 4.30
2157 2246 0.680280 TCGTCTACTGACCAGCCCTC 60.680 60.000 0.00 0.00 39.94 4.30
2158 2247 0.251653 TTCGTCTACTGACCAGCCCT 60.252 55.000 0.00 0.00 39.94 5.19
2159 2248 0.824759 ATTCGTCTACTGACCAGCCC 59.175 55.000 0.00 0.00 39.94 5.19
2160 2249 2.541178 CGTATTCGTCTACTGACCAGCC 60.541 54.545 0.00 0.00 39.94 4.85
2161 2250 2.717530 CGTATTCGTCTACTGACCAGC 58.282 52.381 0.00 0.00 39.94 4.85
2162 2251 2.717530 GCGTATTCGTCTACTGACCAG 58.282 52.381 0.00 0.00 39.94 4.00
2163 2252 1.063027 CGCGTATTCGTCTACTGACCA 59.937 52.381 0.00 0.00 39.94 4.02
2164 2253 1.063174 ACGCGTATTCGTCTACTGACC 59.937 52.381 11.67 0.00 38.44 4.02
2165 2254 2.099621 CACGCGTATTCGTCTACTGAC 58.900 52.381 13.44 0.00 41.21 3.51
2166 2255 1.063027 CCACGCGTATTCGTCTACTGA 59.937 52.381 13.44 0.00 41.21 3.41
2167 2256 1.063027 TCCACGCGTATTCGTCTACTG 59.937 52.381 13.44 0.00 41.21 2.74
2168 2257 1.063174 GTCCACGCGTATTCGTCTACT 59.937 52.381 13.44 0.00 41.21 2.57
2169 2258 1.460766 GTCCACGCGTATTCGTCTAC 58.539 55.000 13.44 0.00 41.21 2.59
2170 2259 0.026674 CGTCCACGCGTATTCGTCTA 59.973 55.000 13.44 0.00 41.21 2.59
2171 2260 1.226211 CGTCCACGCGTATTCGTCT 60.226 57.895 13.44 0.00 41.21 4.18
2172 2261 3.282740 CGTCCACGCGTATTCGTC 58.717 61.111 13.44 0.00 41.21 4.20
2190 2279 3.793144 GTCGCTCAAAGCAGGCCG 61.793 66.667 0.00 0.00 42.58 6.13
2191 2280 3.793144 CGTCGCTCAAAGCAGGCC 61.793 66.667 0.00 0.00 42.58 5.19
2192 2281 2.734673 CTCGTCGCTCAAAGCAGGC 61.735 63.158 0.00 0.00 42.58 4.85
2193 2282 2.097038 CCTCGTCGCTCAAAGCAGG 61.097 63.158 0.00 0.00 42.58 4.85
2194 2283 1.080501 TCCTCGTCGCTCAAAGCAG 60.081 57.895 0.00 0.00 42.58 4.24
2195 2284 3.047735 TCCTCGTCGCTCAAAGCA 58.952 55.556 0.00 0.00 42.58 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.