Multiple sequence alignment - TraesCS1A01G123000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G123000 chr1A 100.000 6277 0 0 1 6277 141438486 141432210 0.000000e+00 11592.0
1 TraesCS1A01G123000 chr1A 91.364 220 9 5 3318 3528 452450242 452450460 6.150000e-75 292.0
2 TraesCS1A01G123000 chr1A 97.101 69 2 0 1372 1440 141437041 141436973 3.980000e-22 117.0
3 TraesCS1A01G123000 chr1A 97.101 69 2 0 1446 1514 141437115 141437047 3.980000e-22 117.0
4 TraesCS1A01G123000 chr1B 94.612 2487 70 16 3527 6002 190884939 190882506 0.000000e+00 3792.0
5 TraesCS1A01G123000 chr1B 95.693 952 29 7 2279 3228 190885946 190885005 0.000000e+00 1520.0
6 TraesCS1A01G123000 chr1B 94.361 869 43 3 1413 2281 190886890 190886028 0.000000e+00 1328.0
7 TraesCS1A01G123000 chr1B 95.803 691 21 3 689 1378 190887698 190887015 0.000000e+00 1109.0
8 TraesCS1A01G123000 chr1B 87.988 641 52 12 1 630 190888777 190888151 0.000000e+00 734.0
9 TraesCS1A01G123000 chr1B 90.667 225 13 1 3318 3534 455204878 455204654 6.150000e-75 292.0
10 TraesCS1A01G123000 chr1B 93.684 190 10 1 5997 6186 190882475 190882288 3.700000e-72 283.0
11 TraesCS1A01G123000 chr1B 100.000 65 0 0 1376 1440 190886854 190886790 3.070000e-23 121.0
12 TraesCS1A01G123000 chr1B 95.714 70 3 0 3250 3319 190885007 190884938 5.140000e-21 113.0
13 TraesCS1A01G123000 chr1D 95.123 1907 76 6 1413 3319 126675796 126673907 0.000000e+00 2990.0
14 TraesCS1A01G123000 chr1D 97.087 1442 38 3 4175 5614 126673287 126671848 0.000000e+00 2427.0
15 TraesCS1A01G123000 chr1D 97.616 713 17 0 666 1378 126676613 126675901 0.000000e+00 1223.0
16 TraesCS1A01G123000 chr1D 96.998 633 12 3 3527 4154 126673908 126673278 0.000000e+00 1057.0
17 TraesCS1A01G123000 chr1D 91.479 399 23 5 5605 6002 126670077 126669689 7.160000e-149 538.0
18 TraesCS1A01G123000 chr1D 90.377 239 15 5 1 238 126677164 126676933 2.200000e-79 307.0
19 TraesCS1A01G123000 chr1D 90.583 223 12 2 3314 3528 229032762 229032541 2.860000e-73 287.0
20 TraesCS1A01G123000 chr1D 93.684 190 12 0 5997 6186 126669659 126669470 1.030000e-72 285.0
21 TraesCS1A01G123000 chr1D 92.040 201 13 2 424 621 126676927 126676727 4.790000e-71 279.0
22 TraesCS1A01G123000 chr1D 98.551 69 1 0 1372 1440 126675763 126675695 8.550000e-24 122.0
23 TraesCS1A01G123000 chr1D 93.333 45 3 0 5469 5513 372861130 372861174 4.060000e-07 67.6
24 TraesCS1A01G123000 chr1D 100.000 28 0 0 1487 1514 126675796 126675769 1.100000e-02 52.8
25 TraesCS1A01G123000 chr2A 85.649 439 41 15 137 562 136337991 136338420 5.780000e-120 442.0
26 TraesCS1A01G123000 chr2A 79.433 141 28 1 3638 3778 677046786 677046925 1.440000e-16 99.0
27 TraesCS1A01G123000 chr2D 86.528 386 35 8 137 512 130427647 130428025 5.860000e-110 409.0
28 TraesCS1A01G123000 chr2D 91.781 219 10 1 3318 3528 284559957 284560175 1.320000e-76 298.0
29 TraesCS1A01G123000 chr2B 86.528 386 35 8 137 512 183656231 183656609 5.860000e-110 409.0
30 TraesCS1A01G123000 chr2B 86.141 368 29 13 145 499 137614686 137614328 1.650000e-100 377.0
31 TraesCS1A01G123000 chr2B 84.158 101 15 1 3654 3754 632516467 632516566 5.180000e-16 97.1
32 TraesCS1A01G123000 chr7D 85.294 408 44 10 159 555 71841212 71840810 2.110000e-109 407.0
33 TraesCS1A01G123000 chr7D 89.823 226 15 1 3315 3532 326052542 326052767 3.700000e-72 283.0
34 TraesCS1A01G123000 chr7B 84.149 429 50 12 143 559 1365608 1365186 3.530000e-107 399.0
35 TraesCS1A01G123000 chr7B 83.715 393 48 11 148 530 589951924 589951538 2.150000e-94 357.0
36 TraesCS1A01G123000 chr5A 82.775 418 54 11 148 554 637103420 637103830 2.150000e-94 357.0
37 TraesCS1A01G123000 chr5A 90.909 220 12 1 3318 3529 129611880 129611661 7.960000e-74 289.0
38 TraesCS1A01G123000 chr5A 93.023 43 2 1 10 51 232947338 232947296 1.890000e-05 62.1
39 TraesCS1A01G123000 chr5D 90.541 222 13 1 3315 3528 421982364 421982585 2.860000e-73 287.0
40 TraesCS1A01G123000 chr6D 89.912 228 13 3 3309 3528 3331659 3331884 1.030000e-72 285.0
41 TraesCS1A01G123000 chr6D 89.912 228 13 3 3309 3528 3337539 3337764 1.030000e-72 285.0
42 TraesCS1A01G123000 chr5B 74.719 178 26 13 3604 3778 308564645 308564806 1.890000e-05 62.1
43 TraesCS1A01G123000 chr3D 100.000 28 0 0 5483 5510 33170056 33170083 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G123000 chr1A 141432210 141438486 6276 True 3942.00 11592 98.067333 1 6277 3 chr1A.!!$R1 6276
1 TraesCS1A01G123000 chr1B 190882288 190888777 6489 True 1125.00 3792 94.731875 1 6186 8 chr1B.!!$R2 6185
2 TraesCS1A01G123000 chr1D 126669470 126677164 7694 True 928.08 2990 95.295500 1 6186 10 chr1D.!!$R2 6185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.178955 TCACGGGGGAGACTTGTACA 60.179 55.0 0.00 0.0 0.00 2.90 F
1389 1796 0.178964 TTGCTTTAGGCCTGGTTGCT 60.179 50.0 17.99 0.0 40.92 3.91 F
1628 2127 0.763035 ACCGCCAGTTACAAAGTCCT 59.237 50.0 0.00 0.0 0.00 3.85 F
3369 3954 0.323087 GTACCCCTCGGTTGCCAATT 60.323 55.0 0.00 0.0 40.58 2.32 F
3515 4100 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.0 0.00 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1805 0.174162 GACAAATGCATCAGGCCCAC 59.826 55.000 0.00 0.0 43.89 4.61 R
3333 3918 0.444651 TACGCGCATGCCTTGTAAAC 59.555 50.000 13.15 0.0 38.08 2.01 R
3496 4081 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.0 0.00 5.34 R
5270 5865 1.515088 CGTCGCAGCAGTCTACTGG 60.515 63.158 11.86 0.0 43.94 4.00 R
5301 5896 4.469657 TGTTAACCTGTTCATGCCTCTTT 58.530 39.130 2.48 0.0 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
118 119 1.228552 AGGGATTGTGTGCCGCTTT 60.229 52.632 0.00 0.00 44.37 3.51
156 157 1.134788 CATCACGGGGGAGACTTGTAC 60.135 57.143 0.00 0.00 0.00 2.90
157 158 0.178955 TCACGGGGGAGACTTGTACA 60.179 55.000 0.00 0.00 0.00 2.90
202 204 4.697352 CGTGAGAGAGATCAACCCAAAAAT 59.303 41.667 0.00 0.00 0.00 1.82
267 276 2.835764 GTGGGGTATGTCTACAACTCCA 59.164 50.000 10.90 10.90 0.00 3.86
305 314 5.817816 GGAACTCGATGTACATTTGGAGATT 59.182 40.000 26.18 19.35 0.00 2.40
351 360 1.680338 AGTGACAGCTTTGGGTGAAC 58.320 50.000 2.20 1.15 42.91 3.18
353 362 1.334869 GTGACAGCTTTGGGTGAACAG 59.665 52.381 2.20 0.00 42.91 3.16
377 386 9.731819 CAGTACTTTGATACTATTCACGTACAT 57.268 33.333 0.00 0.00 36.35 2.29
385 394 9.647797 TGATACTATTCACGTACATTTTTGTCT 57.352 29.630 0.00 0.00 0.00 3.41
416 425 9.791820 TGTTTCTATTAATGCATGTTGAATCAG 57.208 29.630 0.00 0.00 0.00 2.90
417 426 9.241317 GTTTCTATTAATGCATGTTGAATCAGG 57.759 33.333 0.00 0.00 0.00 3.86
523 533 4.764679 TCACAAAAATGAATCTCACCGG 57.235 40.909 0.00 0.00 0.00 5.28
529 539 4.494091 AAATGAATCTCACCGGTCTCAT 57.506 40.909 2.59 5.47 0.00 2.90
562 574 1.352352 CTCACAAGTCTCCCCCACATT 59.648 52.381 0.00 0.00 0.00 2.71
581 593 4.576873 ACATTATCACCGACAACAACACAA 59.423 37.500 0.00 0.00 0.00 3.33
583 595 5.562506 TTATCACCGACAACAACACAAAA 57.437 34.783 0.00 0.00 0.00 2.44
592 604 5.146010 ACAACAACACAAAATTCACCAGT 57.854 34.783 0.00 0.00 0.00 4.00
630 642 4.772886 ACTACGAAAGGCTTGGGATATT 57.227 40.909 0.00 0.00 0.00 1.28
632 644 5.506708 ACTACGAAAGGCTTGGGATATTTT 58.493 37.500 0.00 0.00 0.00 1.82
633 645 4.983671 ACGAAAGGCTTGGGATATTTTC 57.016 40.909 0.00 0.00 0.00 2.29
634 646 4.600062 ACGAAAGGCTTGGGATATTTTCT 58.400 39.130 0.00 0.00 0.00 2.52
822 1229 1.302511 GTCCGAACCACCTGCATGT 60.303 57.895 0.00 0.00 0.00 3.21
856 1263 0.460311 CCGACGGTCCATCTAGCTTT 59.540 55.000 5.48 0.00 0.00 3.51
1028 1435 1.254284 CCCGCAGAGTGAGTCCTCTT 61.254 60.000 8.05 0.00 39.81 2.85
1040 1447 3.449018 TGAGTCCTCTTGAATCCTACAGC 59.551 47.826 0.00 0.00 37.27 4.40
1102 1509 4.706527 GCACAGATGCGCTTATTCTTATC 58.293 43.478 9.73 0.00 43.33 1.75
1120 1527 1.223487 CGGGATCGATGGTTTGGGT 59.777 57.895 0.54 0.00 39.00 4.51
1157 1564 5.431765 GAGGAGCTGGAGAAATATTGTTCA 58.568 41.667 0.00 0.00 0.00 3.18
1296 1703 6.669485 AATGTTTTTGCGACGAATTTAGTC 57.331 33.333 0.00 0.03 35.41 2.59
1378 1785 4.332268 GGTCTGATCTGCTTCTTGCTTTAG 59.668 45.833 0.00 0.00 43.37 1.85
1379 1786 4.332268 GTCTGATCTGCTTCTTGCTTTAGG 59.668 45.833 0.00 0.00 43.37 2.69
1380 1787 3.012518 TGATCTGCTTCTTGCTTTAGGC 58.987 45.455 0.00 0.00 43.37 3.93
1381 1788 1.826385 TCTGCTTCTTGCTTTAGGCC 58.174 50.000 0.00 0.00 43.37 5.19
1383 1790 1.471684 CTGCTTCTTGCTTTAGGCCTG 59.528 52.381 17.99 0.00 43.37 4.85
1384 1791 0.813821 GCTTCTTGCTTTAGGCCTGG 59.186 55.000 17.99 6.68 40.92 4.45
1385 1792 1.888391 GCTTCTTGCTTTAGGCCTGGT 60.888 52.381 17.99 0.00 40.92 4.00
1387 1794 1.909700 TCTTGCTTTAGGCCTGGTTG 58.090 50.000 17.99 3.90 40.92 3.77
1388 1795 0.244721 CTTGCTTTAGGCCTGGTTGC 59.755 55.000 17.99 14.71 40.92 4.17
1389 1796 0.178964 TTGCTTTAGGCCTGGTTGCT 60.179 50.000 17.99 0.00 40.92 3.91
1390 1797 0.895100 TGCTTTAGGCCTGGTTGCTG 60.895 55.000 17.99 0.00 40.92 4.41
1391 1798 1.885871 CTTTAGGCCTGGTTGCTGC 59.114 57.895 17.99 0.00 0.00 5.25
1396 1803 2.352805 GCCTGGTTGCTGCCTACT 59.647 61.111 0.00 0.00 0.00 2.57
1397 1804 2.042831 GCCTGGTTGCTGCCTACTG 61.043 63.158 0.00 0.00 0.00 2.74
1398 1805 1.377725 CCTGGTTGCTGCCTACTGG 60.378 63.158 0.00 0.00 0.00 4.00
1399 1806 1.376466 CTGGTTGCTGCCTACTGGT 59.624 57.895 0.00 0.00 35.27 4.00
1400 1807 0.957395 CTGGTTGCTGCCTACTGGTG 60.957 60.000 0.00 0.00 35.27 4.17
1401 1808 1.675641 GGTTGCTGCCTACTGGTGG 60.676 63.158 0.00 0.00 35.27 4.61
1402 1809 1.675641 GTTGCTGCCTACTGGTGGG 60.676 63.158 0.00 0.00 35.27 4.61
1410 1817 1.153086 CTACTGGTGGGCCTGATGC 60.153 63.158 4.53 0.00 37.43 3.91
1411 1818 1.913951 CTACTGGTGGGCCTGATGCA 61.914 60.000 4.53 0.00 43.89 3.96
1458 1957 1.005037 CAGTGTGCGTTAGGCCTGA 60.005 57.895 17.99 3.42 42.61 3.86
1570 2069 1.064758 TCCGACTGGCCAATAAGCATT 60.065 47.619 7.01 0.00 34.14 3.56
1624 2123 0.949105 AGCGACCGCCAGTTACAAAG 60.949 55.000 11.03 0.00 43.17 2.77
1628 2127 0.763035 ACCGCCAGTTACAAAGTCCT 59.237 50.000 0.00 0.00 0.00 3.85
1757 2256 3.191888 AGGATGTGAGAACTACTGGGT 57.808 47.619 0.00 0.00 0.00 4.51
1765 2264 6.014647 TGTGAGAACTACTGGGTTAGTATGT 58.985 40.000 0.00 0.00 40.94 2.29
1772 2271 9.933723 GAACTACTGGGTTAGTATGTAGAAAAA 57.066 33.333 0.00 0.00 40.94 1.94
1836 2335 4.462483 TGAAACTGAACTTGTTTTGGAGCT 59.538 37.500 0.00 0.00 37.70 4.09
1843 2342 6.503524 TGAACTTGTTTTGGAGCTAATGTTC 58.496 36.000 0.00 0.00 0.00 3.18
1901 2400 9.624373 TGGTTAGTATTAGTTTTTGGTTGTACA 57.376 29.630 0.00 0.00 0.00 2.90
1916 2415 3.341857 TGTACATGCCGAACACAAAAC 57.658 42.857 0.00 0.00 0.00 2.43
1976 2475 9.988815 TGCAAAGTTGTATTATACATGGTTTTT 57.011 25.926 5.85 1.40 38.68 1.94
2022 2521 6.152831 ACCTAAAAATTATTCTTGCCTTCGCT 59.847 34.615 0.00 0.00 35.36 4.93
2043 2542 5.563085 CGCTACTGGGTGTACATAAGAGATC 60.563 48.000 0.00 0.00 0.00 2.75
2070 2569 5.239306 CCTTGTGAGTTTGTGACATGTATGT 59.761 40.000 0.00 0.00 45.16 2.29
2136 2635 2.097629 GCCGCCTTTTCTATTTCAGGAC 59.902 50.000 0.00 0.00 0.00 3.85
2187 2686 7.102346 ACCAATTGATTTTTGTGAGTTGTGAA 58.898 30.769 7.12 0.00 0.00 3.18
2215 2714 0.818296 CAGCTAGGCCGTAGTTCTGT 59.182 55.000 0.00 0.00 0.00 3.41
2216 2715 1.204941 CAGCTAGGCCGTAGTTCTGTT 59.795 52.381 0.00 0.00 0.00 3.16
2231 2730 1.885887 TCTGTTGCTTAGCGCCAATTT 59.114 42.857 2.29 0.00 38.05 1.82
2312 2895 3.771216 ACAACAATTCTCCCAGATGCTT 58.229 40.909 0.00 0.00 0.00 3.91
2434 3017 3.592898 AATTTTGGTTTCGGAGGCATC 57.407 42.857 0.00 0.00 0.00 3.91
2488 3071 7.121168 TCTGGAATTTCGCAGTCTTCAATATTT 59.879 33.333 11.96 0.00 0.00 1.40
2545 3128 3.005684 TCTGGCAGTGAAAAATGCGAAAT 59.994 39.130 15.27 0.00 43.49 2.17
2606 3191 9.940166 GATTTCTTGCACAAAAATGAATTTCTT 57.060 25.926 5.18 0.00 0.00 2.52
2684 3269 6.666113 TCACATACAAGTGGAGAAGGTATACA 59.334 38.462 5.01 0.00 39.93 2.29
2695 3280 6.214615 TGGAGAAGGTATACATCAAAGGTTGA 59.785 38.462 5.01 0.00 45.01 3.18
2881 3466 5.334105 CGTGTTGGAAGTTTTCAGGATACAG 60.334 44.000 0.00 0.00 41.41 2.74
3062 3647 3.074412 ACACCAATTAGTTCTCTTGCGG 58.926 45.455 0.00 0.00 0.00 5.69
3304 3889 9.476202 ACTTTTCACTGGCATTAAAAATAGTTC 57.524 29.630 0.00 0.00 0.00 3.01
3323 3908 9.528489 AATAGTTCAGAGATCTCTAATACTCCC 57.472 37.037 24.69 7.40 37.98 4.30
3324 3909 7.161715 AGTTCAGAGATCTCTAATACTCCCT 57.838 40.000 24.69 9.34 37.98 4.20
3325 3910 7.231467 AGTTCAGAGATCTCTAATACTCCCTC 58.769 42.308 24.69 6.89 37.98 4.30
3326 3911 6.134535 TCAGAGATCTCTAATACTCCCTCC 57.865 45.833 24.69 0.00 37.98 4.30
3327 3912 4.941263 CAGAGATCTCTAATACTCCCTCCG 59.059 50.000 24.69 4.32 37.98 4.63
3328 3913 4.600111 AGAGATCTCTAATACTCCCTCCGT 59.400 45.833 23.98 0.00 38.35 4.69
3329 3914 5.073965 AGAGATCTCTAATACTCCCTCCGTT 59.926 44.000 23.98 0.00 38.35 4.44
3330 3915 5.707495 AGATCTCTAATACTCCCTCCGTTT 58.293 41.667 0.00 0.00 0.00 3.60
3331 3916 5.771165 AGATCTCTAATACTCCCTCCGTTTC 59.229 44.000 0.00 0.00 0.00 2.78
3332 3917 4.863548 TCTCTAATACTCCCTCCGTTTCA 58.136 43.478 0.00 0.00 0.00 2.69
3333 3918 4.888239 TCTCTAATACTCCCTCCGTTTCAG 59.112 45.833 0.00 0.00 0.00 3.02
3334 3919 4.607239 TCTAATACTCCCTCCGTTTCAGT 58.393 43.478 0.00 0.00 0.00 3.41
3335 3920 5.021458 TCTAATACTCCCTCCGTTTCAGTT 58.979 41.667 0.00 0.00 0.00 3.16
3336 3921 4.635699 AATACTCCCTCCGTTTCAGTTT 57.364 40.909 0.00 0.00 0.00 2.66
3337 3922 5.750352 AATACTCCCTCCGTTTCAGTTTA 57.250 39.130 0.00 0.00 0.00 2.01
3338 3923 3.397849 ACTCCCTCCGTTTCAGTTTAC 57.602 47.619 0.00 0.00 0.00 2.01
3339 3924 2.701951 ACTCCCTCCGTTTCAGTTTACA 59.298 45.455 0.00 0.00 0.00 2.41
3340 3925 3.135167 ACTCCCTCCGTTTCAGTTTACAA 59.865 43.478 0.00 0.00 0.00 2.41
3341 3926 3.735591 TCCCTCCGTTTCAGTTTACAAG 58.264 45.455 0.00 0.00 0.00 3.16
3342 3927 2.812011 CCCTCCGTTTCAGTTTACAAGG 59.188 50.000 0.00 0.00 0.00 3.61
3343 3928 2.225727 CCTCCGTTTCAGTTTACAAGGC 59.774 50.000 0.00 0.00 0.00 4.35
3344 3929 2.875933 CTCCGTTTCAGTTTACAAGGCA 59.124 45.455 0.00 0.00 0.00 4.75
3345 3930 3.482436 TCCGTTTCAGTTTACAAGGCAT 58.518 40.909 0.00 0.00 0.00 4.40
3346 3931 3.252215 TCCGTTTCAGTTTACAAGGCATG 59.748 43.478 0.00 0.00 0.00 4.06
3347 3932 2.979813 CGTTTCAGTTTACAAGGCATGC 59.020 45.455 9.90 9.90 0.00 4.06
3348 3933 2.979813 GTTTCAGTTTACAAGGCATGCG 59.020 45.455 12.44 0.00 0.00 4.73
3349 3934 0.521291 TCAGTTTACAAGGCATGCGC 59.479 50.000 12.44 0.00 37.44 6.09
3350 3935 0.794229 CAGTTTACAAGGCATGCGCG 60.794 55.000 12.44 0.00 39.92 6.86
3351 3936 1.209127 GTTTACAAGGCATGCGCGT 59.791 52.632 12.44 10.85 39.92 6.01
3352 3937 0.444651 GTTTACAAGGCATGCGCGTA 59.555 50.000 12.44 2.40 39.92 4.42
3353 3938 0.444651 TTTACAAGGCATGCGCGTAC 59.555 50.000 12.44 0.00 39.92 3.67
3354 3939 1.363145 TTACAAGGCATGCGCGTACC 61.363 55.000 11.17 11.17 39.92 3.34
3355 3940 3.876198 CAAGGCATGCGCGTACCC 61.876 66.667 15.48 12.36 39.92 3.69
3366 3951 3.697747 CGTACCCCTCGGTTGCCA 61.698 66.667 0.00 0.00 40.58 4.92
3367 3952 2.751688 GTACCCCTCGGTTGCCAA 59.248 61.111 0.00 0.00 40.58 4.52
3368 3953 1.301954 GTACCCCTCGGTTGCCAAT 59.698 57.895 0.00 0.00 40.58 3.16
3369 3954 0.323087 GTACCCCTCGGTTGCCAATT 60.323 55.000 0.00 0.00 40.58 2.32
3370 3955 0.406361 TACCCCTCGGTTGCCAATTT 59.594 50.000 0.00 0.00 40.58 1.82
3371 3956 0.471022 ACCCCTCGGTTGCCAATTTT 60.471 50.000 0.00 0.00 40.58 1.82
3372 3957 1.203075 ACCCCTCGGTTGCCAATTTTA 60.203 47.619 0.00 0.00 40.58 1.52
3373 3958 2.107366 CCCCTCGGTTGCCAATTTTAT 58.893 47.619 0.00 0.00 0.00 1.40
3374 3959 2.100749 CCCCTCGGTTGCCAATTTTATC 59.899 50.000 0.00 0.00 0.00 1.75
3375 3960 2.757868 CCCTCGGTTGCCAATTTTATCA 59.242 45.455 0.00 0.00 0.00 2.15
3376 3961 3.428862 CCCTCGGTTGCCAATTTTATCAC 60.429 47.826 0.00 0.00 0.00 3.06
3377 3962 3.428862 CCTCGGTTGCCAATTTTATCACC 60.429 47.826 0.00 0.00 0.00 4.02
3378 3963 2.162608 TCGGTTGCCAATTTTATCACCG 59.837 45.455 1.37 1.37 39.30 4.94
3379 3964 2.094957 CGGTTGCCAATTTTATCACCGT 60.095 45.455 0.00 0.00 34.05 4.83
3380 3965 3.127203 CGGTTGCCAATTTTATCACCGTA 59.873 43.478 0.00 0.00 34.05 4.02
3381 3966 4.379603 CGGTTGCCAATTTTATCACCGTAA 60.380 41.667 0.00 0.00 34.05 3.18
3382 3967 5.656480 GGTTGCCAATTTTATCACCGTAAT 58.344 37.500 0.00 0.00 0.00 1.89
3383 3968 6.458478 CGGTTGCCAATTTTATCACCGTAATA 60.458 38.462 0.00 0.00 34.05 0.98
3384 3969 7.430441 GGTTGCCAATTTTATCACCGTAATAT 58.570 34.615 0.00 0.00 0.00 1.28
3385 3970 8.569641 GGTTGCCAATTTTATCACCGTAATATA 58.430 33.333 0.00 0.00 0.00 0.86
3386 3971 9.953697 GTTGCCAATTTTATCACCGTAATATAA 57.046 29.630 0.00 0.00 0.00 0.98
3388 3973 9.953697 TGCCAATTTTATCACCGTAATATAAAC 57.046 29.630 0.00 0.00 0.00 2.01
3431 4016 8.786826 ATACCGTTTGAAAATAGAACATCTGA 57.213 30.769 0.00 0.00 0.00 3.27
3432 4017 7.504924 ACCGTTTGAAAATAGAACATCTGAA 57.495 32.000 0.00 0.00 0.00 3.02
3433 4018 7.584987 ACCGTTTGAAAATAGAACATCTGAAG 58.415 34.615 0.00 0.00 0.00 3.02
3434 4019 7.228706 ACCGTTTGAAAATAGAACATCTGAAGT 59.771 33.333 0.00 0.00 0.00 3.01
3435 4020 8.076178 CCGTTTGAAAATAGAACATCTGAAGTT 58.924 33.333 0.00 0.00 0.00 2.66
3436 4021 9.450807 CGTTTGAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
3485 4070 5.945466 TTAGGTTGGTTAAATTGACGACC 57.055 39.130 0.00 4.64 0.00 4.79
3486 4071 4.094830 AGGTTGGTTAAATTGACGACCT 57.905 40.909 8.18 8.18 32.66 3.85
3487 4072 5.231702 AGGTTGGTTAAATTGACGACCTA 57.768 39.130 11.08 0.91 34.50 3.08
3488 4073 5.243207 AGGTTGGTTAAATTGACGACCTAG 58.757 41.667 11.08 0.00 34.50 3.02
3489 4074 4.393990 GGTTGGTTAAATTGACGACCTAGG 59.606 45.833 7.41 7.41 33.33 3.02
3490 4075 4.210724 TGGTTAAATTGACGACCTAGGG 57.789 45.455 14.81 0.00 33.33 3.53
3491 4076 3.054948 TGGTTAAATTGACGACCTAGGGG 60.055 47.826 14.81 7.16 38.88 4.79
3508 4093 2.806198 GTACGCGCACGCCTTGTA 60.806 61.111 5.73 3.39 45.53 2.41
3509 4094 2.049341 TACGCGCACGCCTTGTAA 60.049 55.556 5.73 0.00 45.53 2.41
3510 4095 1.664017 TACGCGCACGCCTTGTAAA 60.664 52.632 5.73 0.00 45.53 2.01
3511 4096 1.888958 TACGCGCACGCCTTGTAAAC 61.889 55.000 5.73 0.00 45.53 2.01
3512 4097 2.943653 GCGCACGCCTTGTAAACT 59.056 55.556 0.30 0.00 34.56 2.66
3513 4098 1.440353 GCGCACGCCTTGTAAACTG 60.440 57.895 0.30 0.00 34.56 3.16
3514 4099 1.837538 GCGCACGCCTTGTAAACTGA 61.838 55.000 0.30 0.00 34.56 3.41
3515 4100 0.163788 CGCACGCCTTGTAAACTGAG 59.836 55.000 0.00 0.00 0.00 3.35
3516 4101 1.508632 GCACGCCTTGTAAACTGAGA 58.491 50.000 0.00 0.00 0.00 3.27
3517 4102 1.461127 GCACGCCTTGTAAACTGAGAG 59.539 52.381 0.00 0.00 0.00 3.20
3518 4103 2.866460 GCACGCCTTGTAAACTGAGAGA 60.866 50.000 0.00 0.00 0.00 3.10
3519 4104 2.989840 CACGCCTTGTAAACTGAGAGAG 59.010 50.000 0.00 0.00 0.00 3.20
3520 4105 2.891580 ACGCCTTGTAAACTGAGAGAGA 59.108 45.455 0.00 0.00 0.00 3.10
3521 4106 3.057174 ACGCCTTGTAAACTGAGAGAGAG 60.057 47.826 0.00 0.00 0.00 3.20
3522 4107 3.674682 CGCCTTGTAAACTGAGAGAGAGG 60.675 52.174 0.00 0.00 0.00 3.69
3523 4108 3.511934 GCCTTGTAAACTGAGAGAGAGGA 59.488 47.826 0.00 0.00 0.00 3.71
3524 4109 4.021016 GCCTTGTAAACTGAGAGAGAGGAA 60.021 45.833 0.00 0.00 0.00 3.36
3525 4110 5.719173 CCTTGTAAACTGAGAGAGAGGAAG 58.281 45.833 0.00 0.00 0.00 3.46
3849 4440 1.205417 GTTTTCTCCCATGCATGGTGG 59.795 52.381 37.30 29.03 46.65 4.61
3865 4456 2.024414 GGTGGCATGTTAAGATGGGTC 58.976 52.381 13.92 0.00 0.00 4.46
3905 4496 6.479884 AGGTTAGGATGCTGAATCATTATCC 58.520 40.000 14.41 14.41 36.98 2.59
4030 4621 3.890756 CACCAATAAGCAAGGCATATGGA 59.109 43.478 4.56 0.00 0.00 3.41
4159 4750 3.746751 GCTCATGCTCTCTCTCTCTCTCT 60.747 52.174 0.00 0.00 36.03 3.10
4160 4751 4.063689 CTCATGCTCTCTCTCTCTCTCTC 58.936 52.174 0.00 0.00 0.00 3.20
4161 4752 3.713248 TCATGCTCTCTCTCTCTCTCTCT 59.287 47.826 0.00 0.00 0.00 3.10
4162 4753 3.827008 TGCTCTCTCTCTCTCTCTCTC 57.173 52.381 0.00 0.00 0.00 3.20
4163 4754 3.378512 TGCTCTCTCTCTCTCTCTCTCT 58.621 50.000 0.00 0.00 0.00 3.10
4164 4755 3.386078 TGCTCTCTCTCTCTCTCTCTCTC 59.614 52.174 0.00 0.00 0.00 3.20
4165 4756 3.640967 GCTCTCTCTCTCTCTCTCTCTCT 59.359 52.174 0.00 0.00 0.00 3.10
4166 4757 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
4167 4758 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
4168 4759 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4169 4760 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4170 4761 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4171 4762 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4172 4763 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4173 4764 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4174 4765 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4175 4766 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4176 4767 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4177 4768 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4178 4769 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4179 4770 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4180 4771 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4191 4782 5.822519 TCTCTCTCTCTCTCTCTTGCATTAC 59.177 44.000 0.00 0.00 0.00 1.89
4217 4808 8.559222 TTATTTGTAACAAGCGCATTATGATG 57.441 30.769 11.47 0.00 36.32 3.07
4499 5090 0.811281 GGGTTCATTTGAGAAGCGGG 59.189 55.000 0.00 0.00 44.64 6.13
4675 5267 3.596214 TCTCGAGACTTATTTGTTGGGC 58.404 45.455 12.08 0.00 0.00 5.36
4767 5359 2.629051 CCTCGTCCAATTGAGGGTAAC 58.371 52.381 7.12 0.00 46.55 2.50
4787 5379 6.200475 GGTAACGCCTTGTTCTCATACTATTC 59.800 42.308 0.00 0.00 42.09 1.75
5041 5634 6.584471 ATGTGGGTGTATCCTTATGGTTAA 57.416 37.500 0.00 0.00 36.25 2.01
5060 5653 7.596494 TGGTTAATGAAGCATTTTTCTCTCAG 58.404 34.615 0.00 0.00 38.13 3.35
5134 5729 6.271857 ACTTCATTCCCAGTGATATATGCTCT 59.728 38.462 0.00 0.00 0.00 4.09
5360 5955 2.961741 CTCTGTGGCAGCTCTAGGAATA 59.038 50.000 0.00 0.00 0.00 1.75
5364 5959 2.634940 GTGGCAGCTCTAGGAATATGGA 59.365 50.000 0.00 0.00 0.00 3.41
5400 5996 6.548622 CCCATTGAATCTGTAATGTCCTCATT 59.451 38.462 0.00 0.00 45.00 2.57
5505 6101 7.564988 GGATACATATTACTTGTCGCTCAAAC 58.435 38.462 0.00 0.00 35.48 2.93
5513 6109 3.250744 CTTGTCGCTCAAACGGATCTAA 58.749 45.455 0.00 0.00 35.48 2.10
5522 6118 6.201044 CGCTCAAACGGATCTAAATACATCTT 59.799 38.462 0.00 0.00 0.00 2.40
5529 6125 9.449719 AACGGATCTAAATACATCTTTTTGAGT 57.550 29.630 0.00 0.00 0.00 3.41
5603 6199 1.399440 GAGTGCACGCATGATCATGTT 59.601 47.619 31.09 18.83 40.80 2.71
5640 8016 1.998444 CTGGCATCCTACATGGGCCA 61.998 60.000 9.61 9.61 46.37 5.36
5643 8019 1.708341 GCATCCTACATGGGCCATTT 58.292 50.000 18.46 14.14 36.20 2.32
5649 8025 1.946768 CTACATGGGCCATTTGGTACG 59.053 52.381 18.46 6.23 37.57 3.67
5665 8041 7.814264 TTTGGTACGGAAAATAGTTTTGGTA 57.186 32.000 0.00 0.00 31.94 3.25
5717 8094 7.634432 CCATTAAAGTGTTCAAAACGAAAAAGC 59.366 33.333 0.00 0.00 34.69 3.51
5763 8140 3.857157 AGCCTGTTCCTTGTTTCTACA 57.143 42.857 0.00 0.00 0.00 2.74
5853 8230 7.810658 TGAAATACTCAAAACAGAATCAGCTC 58.189 34.615 0.00 0.00 0.00 4.09
5858 8235 2.462456 AAACAGAATCAGCTCTGCGA 57.538 45.000 0.83 0.00 45.72 5.10
5929 8306 6.322712 GGGGCACATTATTACTGTAAATGGAA 59.677 38.462 13.78 4.47 35.40 3.53
5931 8308 7.867403 GGGCACATTATTACTGTAAATGGAATG 59.133 37.037 13.78 15.72 35.40 2.67
5935 8312 9.860650 ACATTATTACTGTAAATGGAATGGCTA 57.139 29.630 20.08 0.00 35.40 3.93
5943 8320 5.647658 TGTAAATGGAATGGCTACAGACTTG 59.352 40.000 0.00 0.00 0.00 3.16
5957 8334 7.307811 GGCTACAGACTTGTAAGTTAAAACAGG 60.308 40.741 0.00 0.00 39.21 4.00
5963 8340 5.068591 ACTTGTAAGTTAAAACAGGCCCTTG 59.931 40.000 0.00 0.00 35.21 3.61
5966 8343 6.127793 TGTAAGTTAAAACAGGCCCTTGTAA 58.872 36.000 0.00 0.00 0.00 2.41
5973 8350 6.680148 AAAACAGGCCCTTGTAAATTACAT 57.320 33.333 6.67 0.00 38.68 2.29
6052 8464 3.180507 TGGAATTATTTGCAAGCCCCTT 58.819 40.909 0.00 0.00 29.34 3.95
6098 8510 2.787473 TAAGTGGACAGGAGCAATGG 57.213 50.000 0.00 0.00 0.00 3.16
6138 8550 6.560003 AAACCACTATGACTGGATATGACA 57.440 37.500 0.00 0.00 32.55 3.58
6162 8574 8.853126 ACATATGAGCAATATTAATGCAACAGT 58.147 29.630 10.38 0.00 46.22 3.55
6168 8580 7.377398 AGCAATATTAATGCAACAGTCAACAA 58.623 30.769 6.51 0.00 46.22 2.83
6186 8598 1.273327 CAAGGACAACCCATTGCCTTC 59.727 52.381 10.73 0.00 44.04 3.46
6187 8599 0.482446 AGGACAACCCATTGCCTTCA 59.518 50.000 0.00 0.00 38.45 3.02
6188 8600 1.077663 AGGACAACCCATTGCCTTCAT 59.922 47.619 0.00 0.00 38.45 2.57
6189 8601 1.205417 GGACAACCCATTGCCTTCATG 59.795 52.381 0.00 0.00 39.66 3.07
6190 8602 2.170166 GACAACCCATTGCCTTCATGA 58.830 47.619 0.00 0.00 39.66 3.07
6191 8603 2.165030 GACAACCCATTGCCTTCATGAG 59.835 50.000 0.00 0.00 39.66 2.90
6192 8604 1.134907 CAACCCATTGCCTTCATGAGC 60.135 52.381 0.00 0.00 0.00 4.26
6193 8605 0.040058 ACCCATTGCCTTCATGAGCA 59.960 50.000 5.58 5.58 37.18 4.26
6201 8613 5.726980 TTGCCTTCATGAGCAAAACTATT 57.273 34.783 17.33 0.00 45.51 1.73
6202 8614 5.063180 TGCCTTCATGAGCAAAACTATTG 57.937 39.130 7.14 0.00 35.69 1.90
6203 8615 4.082081 TGCCTTCATGAGCAAAACTATTGG 60.082 41.667 7.14 0.00 35.69 3.16
6204 8616 4.082026 GCCTTCATGAGCAAAACTATTGGT 60.082 41.667 2.23 0.00 0.00 3.67
6205 8617 5.644644 CCTTCATGAGCAAAACTATTGGTC 58.355 41.667 12.13 12.13 44.55 4.02
6206 8618 5.393461 CCTTCATGAGCAAAACTATTGGTCC 60.393 44.000 15.32 1.91 43.90 4.46
6207 8619 4.661222 TCATGAGCAAAACTATTGGTCCA 58.339 39.130 15.32 0.00 43.90 4.02
6208 8620 5.076182 TCATGAGCAAAACTATTGGTCCAA 58.924 37.500 6.80 6.80 43.90 3.53
6209 8621 5.538053 TCATGAGCAAAACTATTGGTCCAAA 59.462 36.000 8.75 0.00 43.90 3.28
6210 8622 5.860941 TGAGCAAAACTATTGGTCCAAAA 57.139 34.783 8.75 0.00 43.90 2.44
6211 8623 5.841810 TGAGCAAAACTATTGGTCCAAAAG 58.158 37.500 8.75 0.00 43.90 2.27
6212 8624 4.631131 AGCAAAACTATTGGTCCAAAAGC 58.369 39.130 8.75 5.43 0.00 3.51
6213 8625 3.745975 GCAAAACTATTGGTCCAAAAGCC 59.254 43.478 8.75 0.00 0.00 4.35
6214 8626 4.742138 GCAAAACTATTGGTCCAAAAGCCA 60.742 41.667 8.75 0.00 0.00 4.75
6215 8627 4.600692 AAACTATTGGTCCAAAAGCCAC 57.399 40.909 8.75 0.00 34.02 5.01
6216 8628 3.525800 ACTATTGGTCCAAAAGCCACT 57.474 42.857 8.75 0.00 34.02 4.00
6217 8629 4.650972 ACTATTGGTCCAAAAGCCACTA 57.349 40.909 8.75 0.00 34.02 2.74
6218 8630 4.332828 ACTATTGGTCCAAAAGCCACTAC 58.667 43.478 8.75 0.00 34.02 2.73
6219 8631 3.525800 ATTGGTCCAAAAGCCACTACT 57.474 42.857 8.75 0.00 34.02 2.57
6220 8632 3.306472 TTGGTCCAAAAGCCACTACTT 57.694 42.857 0.40 0.00 34.02 2.24
6221 8633 2.582052 TGGTCCAAAAGCCACTACTTG 58.418 47.619 0.00 0.00 0.00 3.16
6245 8657 4.820897 TCAACATATGACAACGAAGCTCT 58.179 39.130 10.38 0.00 31.50 4.09
6246 8658 5.961272 TCAACATATGACAACGAAGCTCTA 58.039 37.500 10.38 0.00 31.50 2.43
6247 8659 6.394809 TCAACATATGACAACGAAGCTCTAA 58.605 36.000 10.38 0.00 31.50 2.10
6248 8660 6.310467 TCAACATATGACAACGAAGCTCTAAC 59.690 38.462 10.38 0.00 31.50 2.34
6249 8661 5.967088 ACATATGACAACGAAGCTCTAACT 58.033 37.500 10.38 0.00 0.00 2.24
6250 8662 7.096884 ACATATGACAACGAAGCTCTAACTA 57.903 36.000 10.38 0.00 0.00 2.24
6251 8663 6.973474 ACATATGACAACGAAGCTCTAACTAC 59.027 38.462 10.38 0.00 0.00 2.73
6252 8664 5.646577 ATGACAACGAAGCTCTAACTACT 57.353 39.130 0.00 0.00 0.00 2.57
6253 8665 5.044428 TGACAACGAAGCTCTAACTACTC 57.956 43.478 0.00 0.00 0.00 2.59
6254 8666 4.760715 TGACAACGAAGCTCTAACTACTCT 59.239 41.667 0.00 0.00 0.00 3.24
6255 8667 5.936372 TGACAACGAAGCTCTAACTACTCTA 59.064 40.000 0.00 0.00 0.00 2.43
6256 8668 6.092396 TGACAACGAAGCTCTAACTACTCTAG 59.908 42.308 0.00 0.00 0.00 2.43
6257 8669 6.171921 ACAACGAAGCTCTAACTACTCTAGA 58.828 40.000 0.00 0.00 0.00 2.43
6258 8670 6.654161 ACAACGAAGCTCTAACTACTCTAGAA 59.346 38.462 0.00 0.00 0.00 2.10
6259 8671 6.913873 ACGAAGCTCTAACTACTCTAGAAG 57.086 41.667 0.00 0.00 0.00 2.85
6260 8672 6.408869 ACGAAGCTCTAACTACTCTAGAAGT 58.591 40.000 0.00 0.00 42.33 3.01
6261 8673 6.880529 ACGAAGCTCTAACTACTCTAGAAGTT 59.119 38.462 13.11 13.11 39.55 2.66
6262 8674 7.064966 ACGAAGCTCTAACTACTCTAGAAGTTC 59.935 40.741 12.14 0.00 39.55 3.01
6263 8675 7.279313 CGAAGCTCTAACTACTCTAGAAGTTCT 59.721 40.741 12.14 10.87 39.55 3.01
6264 8676 9.603921 GAAGCTCTAACTACTCTAGAAGTTCTA 57.396 37.037 12.14 12.05 39.55 2.10
6265 8677 9.962809 AAGCTCTAACTACTCTAGAAGTTCTAA 57.037 33.333 13.51 4.75 39.55 2.10
6266 8678 9.962809 AGCTCTAACTACTCTAGAAGTTCTAAA 57.037 33.333 13.51 0.00 39.55 1.85
6275 8687 8.937207 ACTCTAGAAGTTCTAAAGTGTTAGGA 57.063 34.615 16.47 5.56 37.83 2.94
6276 8688 9.364653 ACTCTAGAAGTTCTAAAGTGTTAGGAA 57.635 33.333 16.47 0.00 37.83 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.519377 TTGGTGAACTTGTCGACGAT 57.481 45.000 11.62 0.00 0.00 3.73
58 59 1.252215 TGGCGGTGACCTTGACGATA 61.252 55.000 0.00 0.00 0.00 2.92
118 119 1.099689 TGATGTGATCCGTGACGCTA 58.900 50.000 0.00 0.00 0.00 4.26
125 126 0.104855 CCCGTGATGATGTGATCCGT 59.895 55.000 0.00 0.00 0.00 4.69
128 129 0.758734 TCCCCCGTGATGATGTGATC 59.241 55.000 0.00 0.00 0.00 2.92
281 290 4.755411 TCTCCAAATGTACATCGAGTTCC 58.245 43.478 9.23 0.00 0.00 3.62
282 291 6.535150 TGAATCTCCAAATGTACATCGAGTTC 59.465 38.462 9.23 16.80 0.00 3.01
284 293 5.977635 TGAATCTCCAAATGTACATCGAGT 58.022 37.500 9.23 0.81 0.00 4.18
314 323 7.809331 GCTGTCACTATTCACATTCAAAATTGA 59.191 33.333 0.00 0.00 34.92 2.57
318 327 6.882610 AGCTGTCACTATTCACATTCAAAA 57.117 33.333 0.00 0.00 0.00 2.44
336 345 2.172717 AGTACTGTTCACCCAAAGCTGT 59.827 45.455 0.00 0.00 0.00 4.40
351 360 9.731819 ATGTACGTGAATAGTATCAAAGTACTG 57.268 33.333 17.32 0.00 41.39 2.74
391 400 9.241317 CCTGATTCAACATGCATTAATAGAAAC 57.759 33.333 0.00 0.00 0.00 2.78
409 418 7.255590 CCTTAAAAAGTTTCAGCTCCTGATTCA 60.256 37.037 0.00 0.00 40.39 2.57
414 423 5.774498 ACCTTAAAAAGTTTCAGCTCCTG 57.226 39.130 0.00 0.00 0.00 3.86
416 425 6.144078 TCAACCTTAAAAAGTTTCAGCTCC 57.856 37.500 0.00 0.00 0.00 4.70
417 426 6.475727 GGTTCAACCTTAAAAAGTTTCAGCTC 59.524 38.462 0.00 0.00 34.73 4.09
504 513 4.398319 AGACCGGTGAGATTCATTTTTGT 58.602 39.130 14.63 0.00 0.00 2.83
513 523 4.651503 ACATTAGATGAGACCGGTGAGATT 59.348 41.667 14.63 0.00 0.00 2.40
520 530 6.207614 TGAGATCTTACATTAGATGAGACCGG 59.792 42.308 0.00 0.00 35.06 5.28
521 531 7.081349 GTGAGATCTTACATTAGATGAGACCG 58.919 42.308 12.50 0.00 35.06 4.79
523 533 9.462174 CTTGTGAGATCTTACATTAGATGAGAC 57.538 37.037 19.85 0.00 35.06 3.36
529 539 7.068839 GGGAGACTTGTGAGATCTTACATTAGA 59.931 40.741 19.85 5.49 0.00 2.10
562 574 5.759506 ATTTTGTGTTGTTGTCGGTGATA 57.240 34.783 0.00 0.00 0.00 2.15
581 593 1.615392 GAAGGCAGCACTGGTGAATTT 59.385 47.619 12.50 2.71 32.22 1.82
583 595 0.111061 TGAAGGCAGCACTGGTGAAT 59.889 50.000 12.50 0.00 32.22 2.57
592 604 0.613260 AGTATTCGGTGAAGGCAGCA 59.387 50.000 0.00 0.00 42.53 4.41
632 644 9.896645 ATCAGAAAATAAGTAGCTTGATTCAGA 57.103 29.630 0.00 0.00 0.00 3.27
633 645 9.932699 CATCAGAAAATAAGTAGCTTGATTCAG 57.067 33.333 0.00 0.00 0.00 3.02
634 646 9.671279 TCATCAGAAAATAAGTAGCTTGATTCA 57.329 29.630 0.00 0.00 0.00 2.57
706 1112 1.447314 GGAACTACGAGCCGTTGGG 60.447 63.158 5.57 0.98 41.54 4.12
822 1229 3.125520 TCGGATCCATGATCGGACA 57.874 52.632 13.41 0.00 41.27 4.02
856 1263 1.000486 CGAGACTTCCAGAGGGGGA 60.000 63.158 0.00 0.00 37.22 4.81
922 1329 0.093365 GTCTCGTCGTCAGTCTCGTC 59.907 60.000 0.00 0.00 0.00 4.20
994 1401 0.389948 GCGGGTGAAGACATCTCGTT 60.390 55.000 0.00 0.00 0.00 3.85
1028 1435 4.551702 TGCTAAACTGCTGTAGGATTCA 57.448 40.909 0.00 0.00 0.00 2.57
1102 1509 1.095228 CACCCAAACCATCGATCCCG 61.095 60.000 0.00 0.00 37.07 5.14
1120 1527 1.682451 CTCCTCCGTTAATCGCCCCA 61.682 60.000 0.00 0.00 38.35 4.96
1157 1564 6.868622 AGCATACGAAACTAGAGTTCAATCT 58.131 36.000 0.00 0.00 37.25 2.40
1296 1703 1.066645 GGTAGTCCCAACCCTAACACG 60.067 57.143 0.00 0.00 0.00 4.49
1379 1786 2.042831 CAGTAGGCAGCAACCAGGC 61.043 63.158 0.00 0.00 0.00 4.85
1380 1787 1.377725 CCAGTAGGCAGCAACCAGG 60.378 63.158 0.00 0.00 0.00 4.45
1381 1788 0.957395 CACCAGTAGGCAGCAACCAG 60.957 60.000 0.00 0.00 39.06 4.00
1383 1790 1.675641 CCACCAGTAGGCAGCAACC 60.676 63.158 0.00 0.00 39.06 3.77
1384 1791 1.675641 CCCACCAGTAGGCAGCAAC 60.676 63.158 0.00 0.00 39.06 4.17
1385 1792 2.756400 CCCACCAGTAGGCAGCAA 59.244 61.111 0.00 0.00 39.06 3.91
1391 1798 1.528824 CATCAGGCCCACCAGTAGG 59.471 63.158 0.00 0.00 39.06 3.18
1396 1803 1.078891 AAATGCATCAGGCCCACCA 59.921 52.632 0.00 0.00 43.89 4.17
1397 1804 1.259840 ACAAATGCATCAGGCCCACC 61.260 55.000 0.00 0.00 43.89 4.61
1398 1805 0.174162 GACAAATGCATCAGGCCCAC 59.826 55.000 0.00 0.00 43.89 4.61
1399 1806 0.251698 TGACAAATGCATCAGGCCCA 60.252 50.000 0.00 0.00 43.89 5.36
1400 1807 0.174162 GTGACAAATGCATCAGGCCC 59.826 55.000 0.00 0.00 43.89 5.80
1401 1808 1.135199 CAGTGACAAATGCATCAGGCC 60.135 52.381 0.00 0.00 43.89 5.19
1402 1809 1.135199 CCAGTGACAAATGCATCAGGC 60.135 52.381 0.00 0.00 45.13 4.85
1403 1810 1.475280 CCCAGTGACAAATGCATCAGG 59.525 52.381 0.00 0.00 0.00 3.86
1404 1811 2.165167 ACCCAGTGACAAATGCATCAG 58.835 47.619 0.00 0.00 0.00 2.90
1405 1812 2.291209 ACCCAGTGACAAATGCATCA 57.709 45.000 0.00 0.00 0.00 3.07
1406 1813 3.319755 CAAACCCAGTGACAAATGCATC 58.680 45.455 0.00 0.00 0.00 3.91
1407 1814 2.548493 GCAAACCCAGTGACAAATGCAT 60.548 45.455 0.00 0.00 33.00 3.96
1410 1817 1.336440 TCGCAAACCCAGTGACAAATG 59.664 47.619 0.00 0.00 0.00 2.32
1411 1818 1.608590 CTCGCAAACCCAGTGACAAAT 59.391 47.619 0.00 0.00 0.00 2.32
1458 1957 1.304282 CCCACCAGTAGGCAGCAAT 59.696 57.895 0.00 0.00 39.06 3.56
1570 2069 5.766670 AGAGAACAGATTGAGCAAAATGACA 59.233 36.000 5.41 0.00 0.00 3.58
1624 2123 4.036380 ACAATTGTTTCGACTTTCCAGGAC 59.964 41.667 4.92 0.00 0.00 3.85
1628 2127 3.948473 TCCACAATTGTTTCGACTTTCCA 59.052 39.130 8.77 0.00 0.00 3.53
1757 2256 7.484007 CGCTCTTCGACTTTTTCTACATACTAA 59.516 37.037 0.00 0.00 41.67 2.24
1765 2264 3.504906 TCCTCGCTCTTCGACTTTTTCTA 59.495 43.478 0.00 0.00 43.16 2.10
1772 2271 0.523966 CTTGTCCTCGCTCTTCGACT 59.476 55.000 0.00 0.00 43.16 4.18
1836 2335 1.405797 CGGTGGGCGGTAAGAACATTA 60.406 52.381 0.00 0.00 0.00 1.90
1843 2342 2.812178 CGTTCGGTGGGCGGTAAG 60.812 66.667 0.00 0.00 0.00 2.34
1901 2400 4.576216 TGTATTGTTTTGTGTTCGGCAT 57.424 36.364 0.00 0.00 0.00 4.40
1949 2448 9.638239 AAAACCATGTATAATACAACTTTGCAG 57.362 29.630 0.00 0.00 42.76 4.41
1976 2475 5.306678 AGGTGTGGCAAAATTTATGAAGGAA 59.693 36.000 0.00 0.00 0.00 3.36
2022 2521 6.493802 GGATGATCTCTTATGTACACCCAGTA 59.506 42.308 0.00 0.00 0.00 2.74
2043 2542 4.276678 ACATGTCACAAACTCACAAGGATG 59.723 41.667 0.00 0.00 0.00 3.51
2070 2569 1.816863 GACGAGCTCCCACTGTTCCA 61.817 60.000 8.47 0.00 0.00 3.53
2136 2635 1.542915 CACCAATTCAGGGCTCAGTTG 59.457 52.381 0.00 0.00 0.00 3.16
2173 2672 4.437659 GCTTACGGTTTCACAACTCACAAA 60.438 41.667 0.00 0.00 32.90 2.83
2187 2686 1.221021 GGCCTAGCTGCTTACGGTT 59.779 57.895 7.79 0.00 0.00 4.44
2231 2730 5.417580 GCTTATAAACCAATGTGTCCCTTCA 59.582 40.000 0.00 0.00 0.00 3.02
2281 2780 5.832595 TGGGAGAATTGTTGTTCATGAGAAA 59.167 36.000 0.00 0.00 35.08 2.52
2411 2994 5.660460 GATGCCTCCGAAACCAAAATTTAT 58.340 37.500 0.00 0.00 0.00 1.40
2434 3017 1.156736 CTTGGTGCTACTTGGGAACG 58.843 55.000 0.00 0.00 0.00 3.95
2575 3160 9.985730 ATTCATTTTTGTGCAAGAAATCTAGAA 57.014 25.926 0.00 0.00 0.00 2.10
2589 3174 7.775397 ACCAGTCAAGAAATTCATTTTTGTG 57.225 32.000 0.00 0.00 0.00 3.33
2606 3191 6.870971 ATTTAAGCGTTTCTTAACCAGTCA 57.129 33.333 0.00 0.00 44.48 3.41
2649 3234 4.083643 CCACTTGTATGTGAGCAGAAGTTG 60.084 45.833 0.00 0.00 40.12 3.16
2684 3269 3.139077 GGTCTCACGTTCAACCTTTGAT 58.861 45.455 3.34 0.00 39.84 2.57
2695 3280 3.131396 GACATCAAGTTGGTCTCACGTT 58.869 45.455 2.34 0.00 0.00 3.99
2849 3434 6.289834 TGAAAACTTCCAACACGGATACTTA 58.710 36.000 0.00 0.00 45.80 2.24
2871 3456 5.721480 TCTTCTGACCAAATCTGTATCCTGA 59.279 40.000 0.00 0.00 0.00 3.86
2881 3466 6.625873 AAAGTGACTTCTTCTGACCAAATC 57.374 37.500 0.00 0.00 0.00 2.17
3062 3647 6.819397 AACATAAACAGAGTAAAGCCCTTC 57.181 37.500 0.00 0.00 0.00 3.46
3156 3741 9.612066 AGAATTTTGCAAATAAAACTTCAAGGA 57.388 25.926 13.65 0.00 32.86 3.36
3304 3889 4.941263 CGGAGGGAGTATTAGAGATCTCTG 59.059 50.000 31.46 9.16 40.71 3.35
3317 3902 3.896888 TGTAAACTGAAACGGAGGGAGTA 59.103 43.478 0.00 0.00 0.00 2.59
3318 3903 2.701951 TGTAAACTGAAACGGAGGGAGT 59.298 45.455 0.00 0.00 0.00 3.85
3319 3904 3.396260 TGTAAACTGAAACGGAGGGAG 57.604 47.619 0.00 0.00 0.00 4.30
3320 3905 3.495453 CCTTGTAAACTGAAACGGAGGGA 60.495 47.826 0.00 0.00 0.00 4.20
3321 3906 2.812011 CCTTGTAAACTGAAACGGAGGG 59.188 50.000 0.00 0.00 0.00 4.30
3322 3907 2.225727 GCCTTGTAAACTGAAACGGAGG 59.774 50.000 0.00 0.00 0.00 4.30
3323 3908 2.875933 TGCCTTGTAAACTGAAACGGAG 59.124 45.455 0.00 0.00 0.00 4.63
3324 3909 2.920524 TGCCTTGTAAACTGAAACGGA 58.079 42.857 0.00 0.00 0.00 4.69
3325 3910 3.564511 CATGCCTTGTAAACTGAAACGG 58.435 45.455 0.00 0.00 0.00 4.44
3326 3911 2.979813 GCATGCCTTGTAAACTGAAACG 59.020 45.455 6.36 0.00 0.00 3.60
3327 3912 2.979813 CGCATGCCTTGTAAACTGAAAC 59.020 45.455 13.15 0.00 0.00 2.78
3328 3913 2.606795 GCGCATGCCTTGTAAACTGAAA 60.607 45.455 13.15 0.00 33.98 2.69
3329 3914 1.068610 GCGCATGCCTTGTAAACTGAA 60.069 47.619 13.15 0.00 33.98 3.02
3330 3915 0.521291 GCGCATGCCTTGTAAACTGA 59.479 50.000 13.15 0.00 33.98 3.41
3331 3916 0.794229 CGCGCATGCCTTGTAAACTG 60.794 55.000 13.15 0.00 38.08 3.16
3332 3917 1.234615 ACGCGCATGCCTTGTAAACT 61.235 50.000 13.15 0.00 38.08 2.66
3333 3918 0.444651 TACGCGCATGCCTTGTAAAC 59.555 50.000 13.15 0.00 38.08 2.01
3334 3919 0.444651 GTACGCGCATGCCTTGTAAA 59.555 50.000 13.15 0.00 38.08 2.01
3335 3920 1.363145 GGTACGCGCATGCCTTGTAA 61.363 55.000 13.15 0.00 38.08 2.41
3336 3921 1.812093 GGTACGCGCATGCCTTGTA 60.812 57.895 13.15 9.55 38.08 2.41
3337 3922 3.124921 GGTACGCGCATGCCTTGT 61.125 61.111 13.15 10.60 38.08 3.16
3338 3923 3.876198 GGGTACGCGCATGCCTTG 61.876 66.667 11.11 4.41 38.08 3.61
3353 3938 1.551452 TAAAATTGGCAACCGAGGGG 58.449 50.000 0.00 0.00 40.11 4.79
3354 3939 2.757868 TGATAAAATTGGCAACCGAGGG 59.242 45.455 0.00 0.00 0.00 4.30
3355 3940 3.428862 GGTGATAAAATTGGCAACCGAGG 60.429 47.826 0.00 0.00 0.00 4.63
3356 3941 3.730662 CGGTGATAAAATTGGCAACCGAG 60.731 47.826 15.92 0.00 40.23 4.63
3357 3942 2.162608 CGGTGATAAAATTGGCAACCGA 59.837 45.455 15.92 0.00 40.23 4.69
3358 3943 2.094957 ACGGTGATAAAATTGGCAACCG 60.095 45.455 18.51 18.51 43.01 4.44
3359 3944 3.586100 ACGGTGATAAAATTGGCAACC 57.414 42.857 0.00 0.00 0.00 3.77
3360 3945 9.953697 TTATATTACGGTGATAAAATTGGCAAC 57.046 29.630 0.00 0.00 0.00 4.17
3362 3947 9.953697 GTTTATATTACGGTGATAAAATTGGCA 57.046 29.630 0.00 0.00 29.33 4.92
3405 3990 9.878667 TCAGATGTTCTATTTTCAAACGGTATA 57.121 29.630 0.00 0.00 0.00 1.47
3406 3991 8.786826 TCAGATGTTCTATTTTCAAACGGTAT 57.213 30.769 0.00 0.00 0.00 2.73
3407 3992 8.610248 TTCAGATGTTCTATTTTCAAACGGTA 57.390 30.769 0.00 0.00 0.00 4.02
3408 3993 7.228706 ACTTCAGATGTTCTATTTTCAAACGGT 59.771 33.333 0.00 0.00 0.00 4.83
3409 3994 7.584987 ACTTCAGATGTTCTATTTTCAAACGG 58.415 34.615 0.00 0.00 0.00 4.44
3410 3995 9.450807 AAACTTCAGATGTTCTATTTTCAAACG 57.549 29.630 2.28 0.00 0.00 3.60
3459 4044 8.680001 GGTCGTCAATTTAACCAACCTAAATAT 58.320 33.333 0.00 0.00 30.53 1.28
3460 4045 7.884354 AGGTCGTCAATTTAACCAACCTAAATA 59.116 33.333 7.30 0.00 34.22 1.40
3461 4046 6.717997 AGGTCGTCAATTTAACCAACCTAAAT 59.282 34.615 7.30 0.00 34.22 1.40
3462 4047 6.063404 AGGTCGTCAATTTAACCAACCTAAA 58.937 36.000 7.30 0.00 34.22 1.85
3463 4048 5.623169 AGGTCGTCAATTTAACCAACCTAA 58.377 37.500 7.30 0.00 34.22 2.69
3464 4049 5.231702 AGGTCGTCAATTTAACCAACCTA 57.768 39.130 7.30 0.00 34.22 3.08
3465 4050 4.094830 AGGTCGTCAATTTAACCAACCT 57.905 40.909 0.00 0.00 34.09 3.50
3466 4051 4.393990 CCTAGGTCGTCAATTTAACCAACC 59.606 45.833 0.00 0.00 34.09 3.77
3467 4052 4.393990 CCCTAGGTCGTCAATTTAACCAAC 59.606 45.833 8.29 0.00 34.09 3.77
3468 4053 4.566070 CCCCTAGGTCGTCAATTTAACCAA 60.566 45.833 8.29 0.00 34.09 3.67
3469 4054 3.054948 CCCCTAGGTCGTCAATTTAACCA 60.055 47.826 8.29 0.00 34.09 3.67
3470 4055 3.054875 ACCCCTAGGTCGTCAATTTAACC 60.055 47.826 8.29 0.00 46.45 2.85
3471 4056 4.212143 ACCCCTAGGTCGTCAATTTAAC 57.788 45.455 8.29 0.00 46.45 2.01
3472 4057 4.142182 CGTACCCCTAGGTCGTCAATTTAA 60.142 45.833 8.29 0.00 46.45 1.52
3473 4058 3.381272 CGTACCCCTAGGTCGTCAATTTA 59.619 47.826 8.29 0.00 46.45 1.40
3474 4059 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
3475 4060 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
3476 4061 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
3477 4062 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
3478 4063 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
3479 4064 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
3480 4065 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
3481 4066 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
3482 4067 3.142838 TGCGCGTACCCCTAGGTC 61.143 66.667 8.43 0.00 46.45 3.85
3484 4069 4.564116 CGTGCGCGTACCCCTAGG 62.564 72.222 21.71 0.06 40.04 3.02
3491 4076 1.888958 TTTACAAGGCGTGCGCGTAC 61.889 55.000 22.18 17.94 43.06 3.67
3492 4077 1.664017 TTTACAAGGCGTGCGCGTA 60.664 52.632 22.18 0.00 43.06 4.42
3493 4078 2.968156 TTTACAAGGCGTGCGCGT 60.968 55.556 22.18 8.25 43.06 6.01
3494 4079 2.498887 GTTTACAAGGCGTGCGCG 60.499 61.111 16.86 16.86 43.06 6.86
3495 4080 1.440353 CAGTTTACAAGGCGTGCGC 60.440 57.895 8.17 8.17 41.06 6.09
3496 4081 0.163788 CTCAGTTTACAAGGCGTGCG 59.836 55.000 0.00 0.00 0.00 5.34
3497 4082 1.461127 CTCTCAGTTTACAAGGCGTGC 59.539 52.381 0.00 0.00 0.00 5.34
3498 4083 2.989840 CTCTCTCAGTTTACAAGGCGTG 59.010 50.000 0.00 0.00 0.00 5.34
3499 4084 2.891580 TCTCTCTCAGTTTACAAGGCGT 59.108 45.455 0.00 0.00 0.00 5.68
3500 4085 3.506810 CTCTCTCTCAGTTTACAAGGCG 58.493 50.000 0.00 0.00 0.00 5.52
3501 4086 3.511934 TCCTCTCTCTCAGTTTACAAGGC 59.488 47.826 0.00 0.00 0.00 4.35
3502 4087 5.245075 ACTTCCTCTCTCTCAGTTTACAAGG 59.755 44.000 0.00 0.00 0.00 3.61
3503 4088 6.339587 ACTTCCTCTCTCTCAGTTTACAAG 57.660 41.667 0.00 0.00 0.00 3.16
3504 4089 8.423906 AATACTTCCTCTCTCTCAGTTTACAA 57.576 34.615 0.00 0.00 0.00 2.41
3505 4090 9.179909 CTAATACTTCCTCTCTCTCAGTTTACA 57.820 37.037 0.00 0.00 0.00 2.41
3506 4091 9.398538 TCTAATACTTCCTCTCTCTCAGTTTAC 57.601 37.037 0.00 0.00 0.00 2.01
3507 4092 9.976776 TTCTAATACTTCCTCTCTCTCAGTTTA 57.023 33.333 0.00 0.00 0.00 2.01
3508 4093 8.887264 TTCTAATACTTCCTCTCTCTCAGTTT 57.113 34.615 0.00 0.00 0.00 2.66
3509 4094 8.333235 TCTTCTAATACTTCCTCTCTCTCAGTT 58.667 37.037 0.00 0.00 0.00 3.16
3510 4095 7.773690 GTCTTCTAATACTTCCTCTCTCTCAGT 59.226 40.741 0.00 0.00 0.00 3.41
3511 4096 7.773224 TGTCTTCTAATACTTCCTCTCTCTCAG 59.227 40.741 0.00 0.00 0.00 3.35
3512 4097 7.634718 TGTCTTCTAATACTTCCTCTCTCTCA 58.365 38.462 0.00 0.00 0.00 3.27
3513 4098 8.514330 TTGTCTTCTAATACTTCCTCTCTCTC 57.486 38.462 0.00 0.00 0.00 3.20
3514 4099 8.333235 TCTTGTCTTCTAATACTTCCTCTCTCT 58.667 37.037 0.00 0.00 0.00 3.10
3515 4100 8.514330 TCTTGTCTTCTAATACTTCCTCTCTC 57.486 38.462 0.00 0.00 0.00 3.20
3516 4101 8.887264 TTCTTGTCTTCTAATACTTCCTCTCT 57.113 34.615 0.00 0.00 0.00 3.10
3692 4283 8.450578 ACATGTATTTTCAGTTTCAGTTCTCA 57.549 30.769 0.00 0.00 0.00 3.27
3790 4381 5.937975 CCATTCATGGGGAAATGTTTAGT 57.062 39.130 0.00 0.00 44.31 2.24
3849 4440 5.769662 TCAATATGGACCCATCTTAACATGC 59.230 40.000 4.57 0.00 37.82 4.06
3865 4456 9.664332 CATCCTAACCTATTTCTCTCAATATGG 57.336 37.037 0.00 0.00 0.00 2.74
3905 4496 6.461110 AAAAATGAATAGCTCATCCACTGG 57.539 37.500 0.00 0.00 44.43 4.00
4030 4621 6.329496 CACTGTGGTAAAGAAACACAATGTT 58.671 36.000 0.00 0.00 43.67 2.71
4159 4750 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4160 4751 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4161 4752 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
4162 4753 5.599732 CAAGAGAGAGAGAGAGAGAGAGAG 58.400 50.000 0.00 0.00 0.00 3.20
4163 4754 4.141846 GCAAGAGAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
4164 4755 4.125703 GCAAGAGAGAGAGAGAGAGAGAG 58.874 52.174 0.00 0.00 0.00 3.20
4165 4756 3.519107 TGCAAGAGAGAGAGAGAGAGAGA 59.481 47.826 0.00 0.00 0.00 3.10
4166 4757 3.877559 TGCAAGAGAGAGAGAGAGAGAG 58.122 50.000 0.00 0.00 0.00 3.20
4167 4758 3.998913 TGCAAGAGAGAGAGAGAGAGA 57.001 47.619 0.00 0.00 0.00 3.10
4168 4759 5.824624 AGTAATGCAAGAGAGAGAGAGAGAG 59.175 44.000 0.00 0.00 0.00 3.20
4169 4760 5.754782 AGTAATGCAAGAGAGAGAGAGAGA 58.245 41.667 0.00 0.00 0.00 3.10
4170 4761 6.455360 AAGTAATGCAAGAGAGAGAGAGAG 57.545 41.667 0.00 0.00 0.00 3.20
4171 4762 8.532186 AATAAGTAATGCAAGAGAGAGAGAGA 57.468 34.615 0.00 0.00 0.00 3.10
4172 4763 9.033481 CAAATAAGTAATGCAAGAGAGAGAGAG 57.967 37.037 0.00 0.00 0.00 3.20
4173 4764 8.535335 ACAAATAAGTAATGCAAGAGAGAGAGA 58.465 33.333 0.00 0.00 0.00 3.10
4174 4765 8.715191 ACAAATAAGTAATGCAAGAGAGAGAG 57.285 34.615 0.00 0.00 0.00 3.20
4177 4768 9.719355 TGTTACAAATAAGTAATGCAAGAGAGA 57.281 29.630 0.00 0.00 36.47 3.10
4180 4771 9.065871 GCTTGTTACAAATAAGTAATGCAAGAG 57.934 33.333 15.46 0.11 38.75 2.85
4191 4782 8.684655 CATCATAATGCGCTTGTTACAAATAAG 58.315 33.333 9.73 0.00 33.31 1.73
4217 4808 5.862924 TTACTGTACAATCTCAAAGCAGC 57.137 39.130 0.00 0.00 0.00 5.25
4499 5090 2.751259 TCATCCACAAGAAATCTGCTGC 59.249 45.455 0.00 0.00 0.00 5.25
4675 5267 5.068636 AGAAGCATGCTAACCATAGGAATG 58.931 41.667 23.00 0.00 32.82 2.67
4767 5359 7.707035 ACTTAAGAATAGTATGAGAACAAGGCG 59.293 37.037 10.09 0.00 0.00 5.52
4787 5379 3.740832 TGTGACACGATCAAGCACTTAAG 59.259 43.478 0.00 0.00 39.72 1.85
5041 5634 7.828223 ACTATGACTGAGAGAAAAATGCTTCAT 59.172 33.333 0.00 0.00 0.00 2.57
5134 5729 2.961741 TGCAGCATGTTAAGGAACCAAA 59.038 40.909 0.00 0.00 39.31 3.28
5270 5865 1.515088 CGTCGCAGCAGTCTACTGG 60.515 63.158 11.86 0.00 43.94 4.00
5301 5896 4.469657 TGTTAACCTGTTCATGCCTCTTT 58.530 39.130 2.48 0.00 0.00 2.52
5360 5955 6.639590 TTCAATGGGAAAAATCCAATCCAT 57.360 33.333 0.00 0.00 37.87 3.41
5364 5959 7.261688 ACAGATTCAATGGGAAAAATCCAAT 57.738 32.000 0.00 0.00 39.39 3.16
5400 5996 5.122239 GCAAGTGCACATCTGTAGTTATTCA 59.878 40.000 21.04 0.00 41.59 2.57
5480 6076 7.564988 GTTTGAGCGACAAGTAATATGTATCC 58.435 38.462 0.00 0.00 39.77 2.59
5505 6101 9.098355 TCACTCAAAAAGATGTATTTAGATCCG 57.902 33.333 0.00 0.00 0.00 4.18
5513 6109 9.561069 ACTACTTGTCACTCAAAAAGATGTATT 57.439 29.630 0.00 0.00 35.48 1.89
5522 6118 6.811665 CGATCCATACTACTTGTCACTCAAAA 59.188 38.462 0.00 0.00 35.48 2.44
5528 6124 4.261656 CCTCCGATCCATACTACTTGTCAC 60.262 50.000 0.00 0.00 0.00 3.67
5529 6125 3.889538 CCTCCGATCCATACTACTTGTCA 59.110 47.826 0.00 0.00 0.00 3.58
5582 6178 1.011333 CATGATCATGCGTGCACTCA 58.989 50.000 22.20 12.63 31.39 3.41
5585 6181 1.135603 ACAACATGATCATGCGTGCAC 60.136 47.619 31.17 6.82 42.39 4.57
5603 6199 2.784547 GCAGCAGGCACATCATACA 58.215 52.632 0.00 0.00 43.97 2.29
5640 8016 7.292713 ACCAAAACTATTTTCCGTACCAAAT 57.707 32.000 0.00 0.00 0.00 2.32
5643 8019 5.939296 CCTACCAAAACTATTTTCCGTACCA 59.061 40.000 0.00 0.00 0.00 3.25
5649 8025 3.760151 ACGGCCTACCAAAACTATTTTCC 59.240 43.478 0.00 0.00 34.57 3.13
5665 8041 1.173913 GGCAAAATCAGTAACGGCCT 58.826 50.000 0.00 0.00 37.00 5.19
5717 8094 5.446473 CCATGACGAGTGCTTAAGCTTTTAG 60.446 44.000 26.90 16.39 42.66 1.85
5763 8140 2.529744 GGGCAACTGGAGTCTGGGT 61.530 63.158 0.00 0.00 0.00 4.51
5853 8230 2.789092 GCATTCGGACATCTTTTCGCAG 60.789 50.000 0.00 0.00 0.00 5.18
5858 8235 4.853924 AAAGTGCATTCGGACATCTTTT 57.146 36.364 0.00 0.00 35.57 2.27
5929 8306 7.717875 TGTTTTAACTTACAAGTCTGTAGCCAT 59.282 33.333 0.00 0.00 39.21 4.40
5931 8308 7.307811 CCTGTTTTAACTTACAAGTCTGTAGCC 60.308 40.741 0.00 0.00 39.21 3.93
5935 8312 5.298527 GGCCTGTTTTAACTTACAAGTCTGT 59.701 40.000 0.00 0.00 38.57 3.41
5943 8320 6.638096 TTACAAGGGCCTGTTTTAACTTAC 57.362 37.500 6.92 0.00 0.00 2.34
5957 8334 5.691754 GCAATAGCATGTAATTTACAAGGGC 59.308 40.000 12.96 15.31 42.76 5.19
6043 8455 2.165030 CAGTGCTTGATAAAGGGGCTTG 59.835 50.000 0.00 0.00 0.00 4.01
6098 8510 3.132111 TGGTTTTCAGAAGTTCAAAGGGC 59.868 43.478 5.50 0.00 0.00 5.19
6138 8550 9.070179 TGACTGTTGCATTAATATTGCTCATAT 57.930 29.630 8.36 1.45 40.77 1.78
6162 8574 1.686052 GCAATGGGTTGTCCTTGTTGA 59.314 47.619 0.00 0.00 37.65 3.18
6168 8580 0.482446 TGAAGGCAATGGGTTGTCCT 59.518 50.000 0.00 0.00 40.85 3.85
6186 8598 5.389859 TTGGACCAATAGTTTTGCTCATG 57.610 39.130 1.69 0.00 0.00 3.07
6187 8599 6.418057 TTTTGGACCAATAGTTTTGCTCAT 57.582 33.333 7.99 0.00 0.00 2.90
6188 8600 5.738783 GCTTTTGGACCAATAGTTTTGCTCA 60.739 40.000 21.35 0.00 0.00 4.26
6189 8601 4.686091 GCTTTTGGACCAATAGTTTTGCTC 59.314 41.667 21.35 4.20 0.00 4.26
6190 8602 4.503123 GGCTTTTGGACCAATAGTTTTGCT 60.503 41.667 21.35 0.00 0.00 3.91
6191 8603 3.745975 GGCTTTTGGACCAATAGTTTTGC 59.254 43.478 21.35 10.64 0.00 3.68
6192 8604 4.749598 GTGGCTTTTGGACCAATAGTTTTG 59.250 41.667 21.35 2.45 37.79 2.44
6193 8605 4.653801 AGTGGCTTTTGGACCAATAGTTTT 59.346 37.500 21.35 6.83 37.79 2.43
6194 8606 4.223144 AGTGGCTTTTGGACCAATAGTTT 58.777 39.130 21.35 6.56 37.79 2.66
6195 8607 3.844640 AGTGGCTTTTGGACCAATAGTT 58.155 40.909 21.35 6.84 37.79 2.24
6196 8608 3.525800 AGTGGCTTTTGGACCAATAGT 57.474 42.857 21.35 3.76 37.79 2.12
6197 8609 4.589908 AGTAGTGGCTTTTGGACCAATAG 58.410 43.478 17.65 17.65 37.19 1.73
6198 8610 4.650972 AGTAGTGGCTTTTGGACCAATA 57.349 40.909 7.99 2.05 37.79 1.90
6199 8611 3.525800 AGTAGTGGCTTTTGGACCAAT 57.474 42.857 7.99 0.00 37.79 3.16
6200 8612 2.955660 CAAGTAGTGGCTTTTGGACCAA 59.044 45.455 1.69 1.69 37.79 3.67
6201 8613 2.582052 CAAGTAGTGGCTTTTGGACCA 58.418 47.619 0.00 0.00 0.00 4.02
6202 8614 1.886542 CCAAGTAGTGGCTTTTGGACC 59.113 52.381 0.00 0.00 41.72 4.46
6223 8635 4.820897 AGAGCTTCGTTGTCATATGTTGA 58.179 39.130 1.90 0.00 0.00 3.18
6224 8636 6.311445 AGTTAGAGCTTCGTTGTCATATGTTG 59.689 38.462 1.90 0.00 0.00 3.33
6225 8637 6.398918 AGTTAGAGCTTCGTTGTCATATGTT 58.601 36.000 1.90 0.00 0.00 2.71
6226 8638 5.967088 AGTTAGAGCTTCGTTGTCATATGT 58.033 37.500 1.90 0.00 0.00 2.29
6227 8639 7.197017 AGTAGTTAGAGCTTCGTTGTCATATG 58.803 38.462 0.00 0.00 0.00 1.78
6228 8640 7.283580 AGAGTAGTTAGAGCTTCGTTGTCATAT 59.716 37.037 0.00 0.00 0.00 1.78
6229 8641 6.598457 AGAGTAGTTAGAGCTTCGTTGTCATA 59.402 38.462 0.00 0.00 0.00 2.15
6230 8642 5.416326 AGAGTAGTTAGAGCTTCGTTGTCAT 59.584 40.000 0.00 0.00 0.00 3.06
6231 8643 4.760715 AGAGTAGTTAGAGCTTCGTTGTCA 59.239 41.667 0.00 0.00 0.00 3.58
6232 8644 5.299582 AGAGTAGTTAGAGCTTCGTTGTC 57.700 43.478 0.00 0.00 0.00 3.18
6233 8645 6.171921 TCTAGAGTAGTTAGAGCTTCGTTGT 58.828 40.000 0.00 0.00 0.00 3.32
6234 8646 6.665474 TCTAGAGTAGTTAGAGCTTCGTTG 57.335 41.667 0.00 0.00 0.00 4.10
6235 8647 6.880529 ACTTCTAGAGTAGTTAGAGCTTCGTT 59.119 38.462 0.00 0.00 36.65 3.85
6236 8648 6.408869 ACTTCTAGAGTAGTTAGAGCTTCGT 58.591 40.000 0.00 0.00 36.65 3.85
6237 8649 6.913873 ACTTCTAGAGTAGTTAGAGCTTCG 57.086 41.667 0.00 0.00 36.65 3.79
6238 8650 8.502105 AGAACTTCTAGAGTAGTTAGAGCTTC 57.498 38.462 9.34 0.00 37.72 3.86
6239 8651 9.962809 TTAGAACTTCTAGAGTAGTTAGAGCTT 57.037 33.333 9.34 0.00 37.72 3.74
6240 8652 9.962809 TTTAGAACTTCTAGAGTAGTTAGAGCT 57.037 33.333 9.34 5.89 37.72 4.09
6250 8662 8.937207 TCCTAACACTTTAGAACTTCTAGAGT 57.063 34.615 13.76 13.76 42.86 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.