Multiple sequence alignment - TraesCS1A01G122800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G122800 chr1A 100.000 3162 0 0 2833 5994 139639219 139636058 0.000000e+00 5840
1 TraesCS1A01G122800 chr1A 100.000 2732 0 0 1 2732 139642051 139639320 0.000000e+00 5046
2 TraesCS1A01G122800 chr1A 100.000 498 0 0 2833 3330 368382863 368382366 0.000000e+00 920
3 TraesCS1A01G122800 chr1A 100.000 496 0 0 2833 3328 242690784 242690289 0.000000e+00 917
4 TraesCS1A01G122800 chr1A 98.780 246 3 0 2487 2732 242696724 242696479 7.130000e-119 438
5 TraesCS1A01G122800 chr1D 91.546 2496 103 35 1 2489 125868856 125866462 0.000000e+00 3341
6 TraesCS1A01G122800 chr1D 95.191 2017 68 10 3329 5327 125866455 125864450 0.000000e+00 3160
7 TraesCS1A01G122800 chr1D 85.405 185 15 9 5460 5642 125864331 125864157 1.330000e-41 182
8 TraesCS1A01G122800 chr1B 95.428 2034 69 9 3329 5349 189717277 189715255 0.000000e+00 3219
9 TraesCS1A01G122800 chr1B 91.566 2146 80 28 370 2491 189719350 189717282 0.000000e+00 2867
10 TraesCS1A01G122800 chr1B 86.571 350 21 10 7 347 189719657 189719325 4.420000e-96 363
11 TraesCS1A01G122800 chr1B 86.799 303 23 13 5469 5764 189715157 189714865 7.490000e-84 322
12 TraesCS1A01G122800 chr7B 100.000 498 0 0 2833 3330 237916387 237916884 0.000000e+00 920
13 TraesCS1A01G122800 chr7B 100.000 496 0 0 2833 3328 237922825 237923320 0.000000e+00 917
14 TraesCS1A01G122800 chr7B 98.780 246 3 0 2487 2732 237916891 237917136 7.130000e-119 438
15 TraesCS1A01G122800 chr3B 100.000 498 0 0 2833 3330 327915190 327914693 0.000000e+00 920
16 TraesCS1A01G122800 chr3B 100.000 496 0 0 2833 3328 685316616 685317111 0.000000e+00 917
17 TraesCS1A01G122800 chr3B 100.000 496 0 0 2833 3328 775575086 775575581 0.000000e+00 917
18 TraesCS1A01G122800 chr3B 98.780 246 3 0 2487 2732 215632319 215632564 7.130000e-119 438
19 TraesCS1A01G122800 chr3B 98.780 246 3 0 2487 2732 327914686 327914441 7.130000e-119 438
20 TraesCS1A01G122800 chr3B 98.780 246 3 0 2487 2732 685316142 685316387 7.130000e-119 438
21 TraesCS1A01G122800 chr3B 98.780 246 3 0 2487 2732 821748464 821748219 7.130000e-119 438
22 TraesCS1A01G122800 chr3B 98.780 246 3 0 2487 2732 821750627 821750382 7.130000e-119 438
23 TraesCS1A01G122800 chr2A 100.000 498 0 0 2833 3330 654429 653932 0.000000e+00 920
24 TraesCS1A01G122800 chr5A 100.000 496 0 0 2833 3328 598820361 598819866 0.000000e+00 917
25 TraesCS1A01G122800 chrUn 98.374 246 4 0 2487 2732 437294656 437294901 3.320000e-117 433
26 TraesCS1A01G122800 chrUn 98.374 246 4 0 2487 2732 438963794 438964039 3.320000e-117 433
27 TraesCS1A01G122800 chr2D 93.714 175 10 1 65 239 168153973 168153800 1.660000e-65 261


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G122800 chr1A 139636058 139642051 5993 True 5443.000000 5840 100.000 1 5994 2 chr1A.!!$R4 5993
1 TraesCS1A01G122800 chr1D 125864157 125868856 4699 True 2227.666667 3341 90.714 1 5642 3 chr1D.!!$R1 5641
2 TraesCS1A01G122800 chr1B 189714865 189719657 4792 True 1692.750000 3219 90.091 7 5764 4 chr1B.!!$R1 5757
3 TraesCS1A01G122800 chr7B 237916387 237917136 749 False 679.000000 920 99.390 2487 3330 2 chr7B.!!$F2 843
4 TraesCS1A01G122800 chr3B 327914441 327915190 749 True 679.000000 920 99.390 2487 3330 2 chr3B.!!$R1 843
5 TraesCS1A01G122800 chr3B 685316142 685317111 969 False 677.500000 917 99.390 2487 3328 2 chr3B.!!$F3 841
6 TraesCS1A01G122800 chr3B 821748219 821750627 2408 True 438.000000 438 98.780 2487 2732 2 chr3B.!!$R2 245

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 826 0.095417 GGACTGAATCTTGTTCGCGC 59.905 55.000 0.00 0.0 0.00 6.86 F
819 827 0.095417 GACTGAATCTTGTTCGCGCC 59.905 55.000 0.00 0.0 0.00 6.53 F
1790 1809 0.104487 TGTCGGTGGAACGTTTGCTA 59.896 50.000 0.46 0.0 38.12 3.49 F
1825 1844 0.737715 GCGAACGCCTTCTCATCAGT 60.738 55.000 8.03 0.0 34.56 3.41 F
3500 4160 1.079819 CGTGAGGCAGTCGTCCATT 60.080 57.895 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 2408 0.321564 CCCTGGATTCACGCTTGACA 60.322 55.000 0.00 0.0 0.00 3.58 R
2563 2600 4.313282 GACTAAACTTCCCACACACCTAC 58.687 47.826 0.00 0.0 0.00 3.18 R
3503 4163 1.450312 CTTGATCAGGGTGCCCGAC 60.450 63.158 0.98 0.0 41.95 4.79 R
3798 4476 3.123621 CCAACAGAAGATCGTGTTAGTGC 59.876 47.826 9.83 0.0 35.10 4.40 R
5427 6275 0.174389 TTCTCTCACGATGCAGAGGC 59.826 55.000 0.00 0.0 37.37 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 77 5.175859 ACTCTATGTGGTTGTTTGGATACG 58.824 41.667 0.00 0.00 42.51 3.06
79 87 5.209977 GTTGTTTGGATACGGTTCAGTTTC 58.790 41.667 0.00 0.00 42.51 2.78
91 99 4.319261 CGGTTCAGTTTCTAGAAAAACGGG 60.319 45.833 19.30 11.40 42.63 5.28
163 171 6.421377 ACACAAGTTTTTGGAATTCTTTGC 57.579 33.333 5.23 0.00 38.66 3.68
213 221 4.780815 CCATGTTTGGGCTAGATTAGACA 58.219 43.478 0.00 0.00 39.56 3.41
267 275 4.200447 TCCAAACAACCCCTTATCCAAA 57.800 40.909 0.00 0.00 0.00 3.28
272 280 5.482163 AACAACCCCTTATCCAAACAATG 57.518 39.130 0.00 0.00 0.00 2.82
278 286 5.949952 ACCCCTTATCCAAACAATGTTAGTC 59.050 40.000 0.00 0.00 0.00 2.59
334 342 5.240844 AGAGGAAACCAAACAACCGATTTAG 59.759 40.000 0.00 0.00 0.00 1.85
335 343 4.279922 AGGAAACCAAACAACCGATTTAGG 59.720 41.667 0.00 0.00 37.30 2.69
337 345 4.841443 AACCAAACAACCGATTTAGGTC 57.159 40.909 0.00 0.00 45.21 3.85
399 407 3.898741 GTTTTAGGATCCAAACAACCCCA 59.101 43.478 15.82 0.00 33.75 4.96
401 409 2.009681 AGGATCCAAACAACCCCAAC 57.990 50.000 15.82 0.00 0.00 3.77
432 440 1.605753 AAAAACTCCCTTCTCGCCAC 58.394 50.000 0.00 0.00 0.00 5.01
433 441 0.472471 AAAACTCCCTTCTCGCCACA 59.528 50.000 0.00 0.00 0.00 4.17
568 576 1.433534 GCTCCTCGTGAAGGTTCAAG 58.566 55.000 0.00 0.00 46.32 3.02
611 619 0.596577 CTCTCCGAGTTTGGTCGTGA 59.403 55.000 0.00 0.00 38.32 4.35
760 768 4.467084 GGATCCGCCAAGTCGCCA 62.467 66.667 0.00 0.00 36.34 5.69
772 780 4.976116 GCCAAGTCGCCAACATTATAAATC 59.024 41.667 0.00 0.00 0.00 2.17
818 826 0.095417 GGACTGAATCTTGTTCGCGC 59.905 55.000 0.00 0.00 0.00 6.86
819 827 0.095417 GACTGAATCTTGTTCGCGCC 59.905 55.000 0.00 0.00 0.00 6.53
840 848 3.255888 CCCTACAGCCCAAGAAAGAAAAC 59.744 47.826 0.00 0.00 0.00 2.43
844 852 4.023291 ACAGCCCAAGAAAGAAAACAAGA 58.977 39.130 0.00 0.00 0.00 3.02
850 858 4.159506 CCAAGAAAGAAAACAAGACCACCA 59.840 41.667 0.00 0.00 0.00 4.17
851 859 5.163416 CCAAGAAAGAAAACAAGACCACCAT 60.163 40.000 0.00 0.00 0.00 3.55
852 860 6.040391 CCAAGAAAGAAAACAAGACCACCATA 59.960 38.462 0.00 0.00 0.00 2.74
853 861 7.255942 CCAAGAAAGAAAACAAGACCACCATAT 60.256 37.037 0.00 0.00 0.00 1.78
854 862 8.792633 CAAGAAAGAAAACAAGACCACCATATA 58.207 33.333 0.00 0.00 0.00 0.86
855 863 9.533831 AAGAAAGAAAACAAGACCACCATATAT 57.466 29.630 0.00 0.00 0.00 0.86
902 910 2.586792 GGGAGTTGATCAGCGGCT 59.413 61.111 3.72 0.00 0.00 5.52
921 929 0.560688 TTTCTTTTCCCTGCCCCTGT 59.439 50.000 0.00 0.00 0.00 4.00
922 930 0.112412 TTCTTTTCCCTGCCCCTGTC 59.888 55.000 0.00 0.00 0.00 3.51
923 931 1.675641 CTTTTCCCTGCCCCTGTCG 60.676 63.158 0.00 0.00 0.00 4.35
924 932 3.860930 TTTTCCCTGCCCCTGTCGC 62.861 63.158 0.00 0.00 0.00 5.19
948 957 0.602905 CCTCGCTTGGTTCTCGGTTT 60.603 55.000 0.00 0.00 0.00 3.27
965 974 5.644644 TCGGTTTATCGTAGGAGTTTCTTC 58.355 41.667 0.00 0.00 0.00 2.87
966 975 4.802563 CGGTTTATCGTAGGAGTTTCTTCC 59.197 45.833 0.00 0.00 37.52 3.46
985 994 4.675029 CCGGCGGGTTCTGTTCGT 62.675 66.667 20.56 0.00 0.00 3.85
986 995 3.110178 CGGCGGGTTCTGTTCGTC 61.110 66.667 0.00 0.00 0.00 4.20
987 996 3.110178 GGCGGGTTCTGTTCGTCG 61.110 66.667 0.00 0.00 0.00 5.12
1214 1226 1.527370 CCCCGACCCTTCTCAATCC 59.473 63.158 0.00 0.00 0.00 3.01
1224 1236 3.626729 CCCTTCTCAATCCCAATCTGCTT 60.627 47.826 0.00 0.00 0.00 3.91
1232 1244 6.430864 TCAATCCCAATCTGCTTATGGTAAA 58.569 36.000 0.00 0.00 32.13 2.01
1233 1245 7.068702 TCAATCCCAATCTGCTTATGGTAAAT 58.931 34.615 0.00 0.00 32.13 1.40
1234 1246 8.224025 TCAATCCCAATCTGCTTATGGTAAATA 58.776 33.333 0.00 0.00 32.13 1.40
1235 1247 8.299570 CAATCCCAATCTGCTTATGGTAAATAC 58.700 37.037 0.00 0.00 32.13 1.89
1236 1248 6.905736 TCCCAATCTGCTTATGGTAAATACA 58.094 36.000 0.00 0.00 32.13 2.29
1237 1249 7.526041 TCCCAATCTGCTTATGGTAAATACAT 58.474 34.615 0.00 0.00 32.13 2.29
1283 1295 1.463528 GGCAAATTTCTCGGACGAACG 60.464 52.381 0.00 0.00 0.00 3.95
1296 1308 4.091800 TCGGACGAACGAACCAAAAATATC 59.908 41.667 0.14 0.00 40.34 1.63
1304 1316 7.112009 CGAACGAACCAAAAATATCTGCATATG 59.888 37.037 0.00 0.00 0.00 1.78
1306 1318 7.995289 ACGAACCAAAAATATCTGCATATGAA 58.005 30.769 6.97 0.00 0.00 2.57
1325 1337 9.459640 CATATGAATTTCATCGATTTGCTTTCT 57.540 29.630 14.99 0.00 38.26 2.52
1378 1393 6.374613 CACATATGATAGCATTGATGGCTCTT 59.625 38.462 10.38 0.00 42.62 2.85
1400 1415 4.081406 TGCCTTAGCATCAAGTTCATTGT 58.919 39.130 0.00 0.00 46.52 2.71
1405 1420 6.149973 CCTTAGCATCAAGTTCATTGTCTGAA 59.850 38.462 0.00 0.00 41.61 3.02
1463 1481 4.722361 GCTAGTGAAGCCAACTACTACT 57.278 45.455 0.00 0.00 46.25 2.57
1464 1482 5.831702 GCTAGTGAAGCCAACTACTACTA 57.168 43.478 0.00 0.00 46.25 1.82
1465 1483 5.823353 GCTAGTGAAGCCAACTACTACTAG 58.177 45.833 0.00 0.00 46.25 2.57
1466 1484 5.357596 GCTAGTGAAGCCAACTACTACTAGT 59.642 44.000 0.00 0.00 46.25 2.57
1467 1485 6.541641 GCTAGTGAAGCCAACTACTACTAGTA 59.458 42.308 1.89 1.89 46.25 1.82
1468 1486 6.756299 AGTGAAGCCAACTACTACTAGTAC 57.244 41.667 0.00 0.00 32.46 2.73
1469 1487 6.243900 AGTGAAGCCAACTACTACTAGTACA 58.756 40.000 0.00 0.00 32.46 2.90
1470 1488 6.890814 AGTGAAGCCAACTACTACTAGTACAT 59.109 38.462 0.00 0.00 32.46 2.29
1471 1489 8.051535 AGTGAAGCCAACTACTACTAGTACATA 58.948 37.037 0.00 0.00 32.46 2.29
1472 1490 8.344098 GTGAAGCCAACTACTACTAGTACATAG 58.656 40.741 12.18 12.18 32.46 2.23
1473 1491 8.051535 TGAAGCCAACTACTACTAGTACATAGT 58.948 37.037 13.14 13.14 46.70 2.12
1474 1492 9.553064 GAAGCCAACTACTACTAGTACATAGTA 57.447 37.037 16.98 11.07 43.17 1.82
1700 1719 4.082523 CCACCTGCGTGTCCGGAT 62.083 66.667 7.81 0.00 38.41 4.18
1758 1777 9.661187 CACTCTACGTATGTAAAATATCTCGTT 57.339 33.333 0.00 0.00 0.00 3.85
1790 1809 0.104487 TGTCGGTGGAACGTTTGCTA 59.896 50.000 0.46 0.00 38.12 3.49
1825 1844 0.737715 GCGAACGCCTTCTCATCAGT 60.738 55.000 8.03 0.00 34.56 3.41
1873 1892 8.260818 ACATGCTTTCTAGAGCTTGAAGTTATA 58.739 33.333 20.17 0.00 45.52 0.98
1899 1918 4.878971 TGGACTTGAATTTCAACGAAGTGA 59.121 37.500 7.74 0.00 45.00 3.41
1900 1919 5.355630 TGGACTTGAATTTCAACGAAGTGAA 59.644 36.000 7.74 0.00 45.00 3.18
2145 2182 2.093500 GGCCAATTTGGAATTGAGGGAC 60.093 50.000 19.76 0.00 40.96 4.46
2166 2203 6.127952 GGGACTACTCGCTATTAGAACCATAG 60.128 46.154 0.00 0.00 0.00 2.23
2277 2314 1.263217 ACCGTTTGTTGCGACTGAATC 59.737 47.619 5.50 0.00 0.00 2.52
2350 2387 2.885676 CGTGCTTCGTGTGCAGCTT 61.886 57.895 0.00 0.00 41.41 3.74
2371 2408 3.660111 GGCAAGGACAAGCGCGTT 61.660 61.111 8.43 0.00 0.00 4.84
3500 4160 1.079819 CGTGAGGCAGTCGTCCATT 60.080 57.895 0.00 0.00 0.00 3.16
3503 4163 2.434884 AGGCAGTCGTCCATTGCG 60.435 61.111 0.00 0.00 38.69 4.85
3734 4412 2.309501 CGACATGCGTGTGTCTGCA 61.310 57.895 18.17 0.00 44.89 4.41
3798 4476 3.670055 AGCGTTTGCATTTTTCTCAATCG 59.330 39.130 0.00 0.00 46.23 3.34
3821 4499 4.307432 CACTAACACGATCTTCTGTTGGT 58.693 43.478 9.54 9.54 41.28 3.67
3825 4503 4.330944 ACACGATCTTCTGTTGGTTACA 57.669 40.909 0.00 0.00 34.95 2.41
3928 4665 1.993370 GTCATCGGCGTGATATTAGGC 59.007 52.381 6.85 3.73 34.83 3.93
4327 5154 7.974504 AGTTAATATCCGGAATGTATCTTGGT 58.025 34.615 9.01 0.00 0.00 3.67
4403 5230 1.533731 ACATTAAACGCACCAACCTCG 59.466 47.619 0.00 0.00 0.00 4.63
4921 5748 3.998672 TCGGAGTTGGTGGCGGTC 61.999 66.667 0.00 0.00 0.00 4.79
5067 5904 2.574006 TCAAAGAAGCCTGATGTGCT 57.426 45.000 0.00 0.00 41.89 4.40
5084 5921 6.262944 TGATGTGCTTCTGTCAAACTAATGTT 59.737 34.615 0.00 0.00 38.16 2.71
5086 5923 7.561021 TGTGCTTCTGTCAAACTAATGTTTA 57.439 32.000 0.00 0.00 43.75 2.01
5100 5937 9.719355 AAACTAATGTTTAATCAAAATGGGTCC 57.281 29.630 0.00 0.00 43.76 4.46
5101 5938 7.543756 ACTAATGTTTAATCAAAATGGGTCCG 58.456 34.615 0.00 0.00 0.00 4.79
5102 5939 4.181309 TGTTTAATCAAAATGGGTCCGC 57.819 40.909 0.00 0.00 0.00 5.54
5103 5940 3.056465 TGTTTAATCAAAATGGGTCCGCC 60.056 43.478 0.00 0.00 0.00 6.13
5104 5941 2.818751 TAATCAAAATGGGTCCGCCT 57.181 45.000 0.00 0.00 34.45 5.52
5105 5942 1.937191 AATCAAAATGGGTCCGCCTT 58.063 45.000 0.00 0.00 34.45 4.35
5109 5946 4.447138 TCAAAATGGGTCCGCCTTATAT 57.553 40.909 0.00 0.00 34.45 0.86
5121 5958 3.376859 CCGCCTTATATGTTTGCTGTTGA 59.623 43.478 0.00 0.00 0.00 3.18
5131 5968 2.057137 TTGCTGTTGAAAGCTCCAGT 57.943 45.000 0.00 0.00 43.90 4.00
5136 5973 2.547211 CTGTTGAAAGCTCCAGTGTCTG 59.453 50.000 0.00 0.00 0.00 3.51
5142 5979 3.567478 AAGCTCCAGTGTCTGAAGTTT 57.433 42.857 0.00 0.00 32.44 2.66
5144 5981 1.265365 GCTCCAGTGTCTGAAGTTTGC 59.735 52.381 0.00 0.00 32.44 3.68
5148 5985 2.684881 CCAGTGTCTGAAGTTTGCAACT 59.315 45.455 0.00 0.00 45.46 3.16
5153 5990 4.009675 TGTCTGAAGTTTGCAACTGAACT 58.990 39.130 0.00 0.00 41.91 3.01
5165 6002 3.002348 GCAACTGAACTACTGTGGTGTTC 59.998 47.826 0.00 6.85 40.09 3.18
5186 6031 6.373216 TGTTCCATAGAAACCAATTTAGGACG 59.627 38.462 0.00 0.00 32.58 4.79
5189 6034 6.943718 TCCATAGAAACCAATTTAGGACGTTT 59.056 34.615 0.00 0.00 0.00 3.60
5192 6037 4.521639 AGAAACCAATTTAGGACGTTTCCC 59.478 41.667 7.22 0.00 44.10 3.97
5239 6085 2.693074 TGGAACAGGGCTTTTCTTGTTC 59.307 45.455 10.15 10.15 36.06 3.18
5248 6094 3.066203 GGCTTTTCTTGTTCTCCGAACAA 59.934 43.478 17.95 17.95 37.76 2.83
5256 6102 4.609691 TGTTCTCCGAACAACTGAAAAC 57.390 40.909 6.94 0.00 0.00 2.43
5264 6110 3.309682 CGAACAACTGAAAACAGAGCTGA 59.690 43.478 4.21 0.00 0.00 4.26
5272 6118 8.725148 CAACTGAAAACAGAGCTGATTACTAAT 58.275 33.333 4.21 0.00 0.00 1.73
5281 6128 9.323985 ACAGAGCTGATTACTAATTTCTGAATC 57.676 33.333 4.21 1.01 35.84 2.52
5312 6159 3.826729 GACCTTGTGTAGCCCAAAGAAAT 59.173 43.478 0.00 0.00 0.00 2.17
5349 6197 4.762251 ACTGCCAAAAACTCCAGATAACTC 59.238 41.667 0.00 0.00 0.00 3.01
5351 6199 5.385198 TGCCAAAAACTCCAGATAACTCTT 58.615 37.500 0.00 0.00 0.00 2.85
5352 6200 5.241506 TGCCAAAAACTCCAGATAACTCTTG 59.758 40.000 0.00 0.00 0.00 3.02
5353 6201 5.473504 GCCAAAAACTCCAGATAACTCTTGA 59.526 40.000 0.00 0.00 0.00 3.02
5361 6209 7.863722 ACTCCAGATAACTCTTGAGTACTAGA 58.136 38.462 7.39 0.00 46.98 2.43
5362 6210 7.771826 ACTCCAGATAACTCTTGAGTACTAGAC 59.228 40.741 7.39 0.00 46.98 2.59
5363 6211 7.631007 TCCAGATAACTCTTGAGTACTAGACA 58.369 38.462 3.52 0.00 0.00 3.41
5365 6213 7.012894 CCAGATAACTCTTGAGTACTAGACAGG 59.987 44.444 3.52 0.00 0.00 4.00
5366 6214 7.771361 CAGATAACTCTTGAGTACTAGACAGGA 59.229 40.741 3.52 0.00 0.00 3.86
5368 6216 5.508280 ACTCTTGAGTACTAGACAGGAGT 57.492 43.478 17.16 17.16 42.85 3.85
5369 6217 5.250200 ACTCTTGAGTACTAGACAGGAGTG 58.750 45.833 20.32 5.25 44.76 3.51
5370 6218 5.013287 ACTCTTGAGTACTAGACAGGAGTGA 59.987 44.000 20.32 1.73 44.76 3.41
5371 6219 5.877491 TCTTGAGTACTAGACAGGAGTGAA 58.123 41.667 0.00 0.00 0.00 3.18
5372 6220 6.304624 TCTTGAGTACTAGACAGGAGTGAAA 58.695 40.000 0.00 0.00 0.00 2.69
5373 6221 6.948886 TCTTGAGTACTAGACAGGAGTGAAAT 59.051 38.462 0.00 0.00 0.00 2.17
5374 6222 8.107729 TCTTGAGTACTAGACAGGAGTGAAATA 58.892 37.037 0.00 0.00 0.00 1.40
5375 6223 7.867305 TGAGTACTAGACAGGAGTGAAATAG 57.133 40.000 0.00 0.00 0.00 1.73
5377 6225 8.275758 TGAGTACTAGACAGGAGTGAAATAGAT 58.724 37.037 0.00 0.00 0.00 1.98
5379 6227 9.482175 AGTACTAGACAGGAGTGAAATAGATTT 57.518 33.333 0.00 0.00 0.00 2.17
5380 6228 9.738832 GTACTAGACAGGAGTGAAATAGATTTC 57.261 37.037 7.86 7.86 44.83 2.17
5382 6230 9.041354 ACTAGACAGGAGTGAAATAGATTTCTT 57.959 33.333 14.42 4.91 44.85 2.52
5383 6231 9.883142 CTAGACAGGAGTGAAATAGATTTCTTT 57.117 33.333 14.42 4.61 44.85 2.52
5433 6281 3.155167 GGAGTACCCCGGCCTCTG 61.155 72.222 0.00 0.00 0.00 3.35
5434 6282 3.851128 GAGTACCCCGGCCTCTGC 61.851 72.222 0.00 0.00 0.00 4.26
5435 6283 4.715130 AGTACCCCGGCCTCTGCA 62.715 66.667 0.00 0.00 40.13 4.41
5442 6290 2.584418 CGGCCTCTGCATCGTGAG 60.584 66.667 0.00 0.00 40.13 3.51
5483 6331 4.022849 GCCACTACAAAATATGCCCTCATC 60.023 45.833 0.00 0.00 34.22 2.92
5486 6334 5.240183 CACTACAAAATATGCCCTCATCCTG 59.760 44.000 0.00 0.00 34.22 3.86
5589 6437 9.696917 AAATTAACAGAATTAACAAAGAGGCAG 57.303 29.630 0.00 0.00 0.00 4.85
5590 6438 8.635765 ATTAACAGAATTAACAAAGAGGCAGA 57.364 30.769 0.00 0.00 0.00 4.26
5591 6439 5.948992 ACAGAATTAACAAAGAGGCAGAC 57.051 39.130 0.00 0.00 0.00 3.51
5592 6440 4.762251 ACAGAATTAACAAAGAGGCAGACC 59.238 41.667 0.00 0.00 0.00 3.85
5593 6441 4.761739 CAGAATTAACAAAGAGGCAGACCA 59.238 41.667 0.00 0.00 39.06 4.02
5595 6443 5.416952 AGAATTAACAAAGAGGCAGACCATG 59.583 40.000 0.00 0.00 39.06 3.66
5604 6453 3.823304 AGAGGCAGACCATGTTTTCTTTC 59.177 43.478 0.00 0.00 39.06 2.62
5605 6454 3.823304 GAGGCAGACCATGTTTTCTTTCT 59.177 43.478 0.00 0.00 39.06 2.52
5606 6455 4.218312 AGGCAGACCATGTTTTCTTTCTT 58.782 39.130 0.00 0.00 39.06 2.52
5607 6456 4.651045 AGGCAGACCATGTTTTCTTTCTTT 59.349 37.500 0.00 0.00 39.06 2.52
5608 6457 5.129320 AGGCAGACCATGTTTTCTTTCTTTT 59.871 36.000 0.00 0.00 39.06 2.27
5609 6458 5.463392 GGCAGACCATGTTTTCTTTCTTTTC 59.537 40.000 0.00 0.00 35.26 2.29
5610 6459 6.042143 GCAGACCATGTTTTCTTTCTTTTCA 58.958 36.000 0.00 0.00 0.00 2.69
5611 6460 6.534793 GCAGACCATGTTTTCTTTCTTTTCAA 59.465 34.615 0.00 0.00 0.00 2.69
5612 6461 7.225341 GCAGACCATGTTTTCTTTCTTTTCAAT 59.775 33.333 0.00 0.00 0.00 2.57
5613 6462 8.545420 CAGACCATGTTTTCTTTCTTTTCAATG 58.455 33.333 0.00 0.00 0.00 2.82
5614 6463 8.260114 AGACCATGTTTTCTTTCTTTTCAATGT 58.740 29.630 0.00 0.00 0.00 2.71
5615 6464 9.528018 GACCATGTTTTCTTTCTTTTCAATGTA 57.472 29.630 0.00 0.00 0.00 2.29
5644 6494 4.082463 GGACAAATACCGAATTCTTGGCAA 60.082 41.667 11.17 0.00 0.00 4.52
5649 6499 2.795329 ACCGAATTCTTGGCAATGACT 58.205 42.857 0.00 0.00 0.00 3.41
5653 6503 4.396166 CCGAATTCTTGGCAATGACTAACT 59.604 41.667 0.00 0.00 0.00 2.24
5666 6518 8.565416 GGCAATGACTAACTAAATGGTAATACC 58.435 37.037 1.71 1.71 39.22 2.73
5681 6533 7.748691 TGGTAATACCTTTTAGACACAAACC 57.251 36.000 11.16 0.00 39.58 3.27
5682 6534 7.288560 TGGTAATACCTTTTAGACACAAACCA 58.711 34.615 11.16 0.00 39.58 3.67
5692 6544 9.965824 CTTTTAGACACAAACCAACATATCTTT 57.034 29.630 0.00 0.00 0.00 2.52
5713 6565 8.561738 TCTTTGTTGGAGTTGGTAGAATAATC 57.438 34.615 0.00 0.00 0.00 1.75
5725 6577 9.984190 GTTGGTAGAATAATCTAGGGTAAGAAG 57.016 37.037 0.00 0.00 38.82 2.85
5732 6584 9.413048 GAATAATCTAGGGTAAGAAGACATTCG 57.587 37.037 0.00 0.00 40.58 3.34
5749 6601 7.820648 AGACATTCGTTTCTCAAATATTGCTT 58.179 30.769 0.00 0.00 0.00 3.91
5750 6602 7.752239 AGACATTCGTTTCTCAAATATTGCTTG 59.248 33.333 0.00 0.00 0.00 4.01
5751 6603 7.592938 ACATTCGTTTCTCAAATATTGCTTGA 58.407 30.769 0.00 0.00 0.00 3.02
5753 6605 6.801539 TCGTTTCTCAAATATTGCTTGAGT 57.198 33.333 13.00 0.00 46.53 3.41
5754 6606 6.602179 TCGTTTCTCAAATATTGCTTGAGTG 58.398 36.000 13.00 5.28 46.53 3.51
5755 6607 6.204688 TCGTTTCTCAAATATTGCTTGAGTGT 59.795 34.615 13.00 0.00 46.53 3.55
5756 6608 7.386573 TCGTTTCTCAAATATTGCTTGAGTGTA 59.613 33.333 13.00 1.81 46.53 2.90
5757 6609 7.478667 CGTTTCTCAAATATTGCTTGAGTGTAC 59.521 37.037 13.00 9.61 46.53 2.90
5758 6610 7.977789 TTCTCAAATATTGCTTGAGTGTACA 57.022 32.000 13.00 0.00 46.53 2.90
5759 6611 7.364522 TCTCAAATATTGCTTGAGTGTACAC 57.635 36.000 18.56 18.56 46.53 2.90
5760 6612 7.161404 TCTCAAATATTGCTTGAGTGTACACT 58.839 34.615 28.27 28.27 46.53 3.55
5761 6613 8.311109 TCTCAAATATTGCTTGAGTGTACACTA 58.689 33.333 27.98 13.12 46.53 2.74
5762 6614 8.251750 TCAAATATTGCTTGAGTGTACACTAC 57.748 34.615 27.98 20.20 42.66 2.73
5763 6615 6.887376 AATATTGCTTGAGTGTACACTACG 57.113 37.500 27.98 18.74 42.66 3.51
5764 6616 2.717580 TGCTTGAGTGTACACTACGG 57.282 50.000 27.98 19.56 42.66 4.02
5765 6617 1.958579 TGCTTGAGTGTACACTACGGT 59.041 47.619 27.98 6.44 42.66 4.83
5766 6618 2.030540 TGCTTGAGTGTACACTACGGTC 60.031 50.000 27.98 15.81 42.66 4.79
5767 6619 2.670509 GCTTGAGTGTACACTACGGTCC 60.671 54.545 27.98 14.90 42.66 4.46
5783 6635 4.268359 ACGGTCCTCGACTCTAAAACTAT 58.732 43.478 0.00 0.00 42.43 2.12
5785 6637 4.361420 GGTCCTCGACTCTAAAACTATGC 58.639 47.826 0.00 0.00 32.47 3.14
5786 6638 4.142227 GGTCCTCGACTCTAAAACTATGCA 60.142 45.833 0.00 0.00 32.47 3.96
5787 6639 5.408356 GTCCTCGACTCTAAAACTATGCAA 58.592 41.667 0.00 0.00 0.00 4.08
5788 6640 5.867716 GTCCTCGACTCTAAAACTATGCAAA 59.132 40.000 0.00 0.00 0.00 3.68
5789 6641 6.535508 GTCCTCGACTCTAAAACTATGCAAAT 59.464 38.462 0.00 0.00 0.00 2.32
5790 6642 7.705325 GTCCTCGACTCTAAAACTATGCAAATA 59.295 37.037 0.00 0.00 0.00 1.40
5791 6643 8.255206 TCCTCGACTCTAAAACTATGCAAATAA 58.745 33.333 0.00 0.00 0.00 1.40
5792 6644 9.046296 CCTCGACTCTAAAACTATGCAAATAAT 57.954 33.333 0.00 0.00 0.00 1.28
5794 6646 8.752254 TCGACTCTAAAACTATGCAAATAATCG 58.248 33.333 0.00 0.00 0.00 3.34
5795 6647 7.527516 CGACTCTAAAACTATGCAAATAATCGC 59.472 37.037 0.00 0.00 0.00 4.58
5796 6648 7.639945 ACTCTAAAACTATGCAAATAATCGCC 58.360 34.615 0.00 0.00 0.00 5.54
5797 6649 7.282224 ACTCTAAAACTATGCAAATAATCGCCA 59.718 33.333 0.00 0.00 0.00 5.69
5798 6650 7.990917 TCTAAAACTATGCAAATAATCGCCAA 58.009 30.769 0.00 0.00 0.00 4.52
5799 6651 8.462811 TCTAAAACTATGCAAATAATCGCCAAA 58.537 29.630 0.00 0.00 0.00 3.28
5800 6652 9.248291 CTAAAACTATGCAAATAATCGCCAAAT 57.752 29.630 0.00 0.00 0.00 2.32
5801 6653 7.698836 AAACTATGCAAATAATCGCCAAATC 57.301 32.000 0.00 0.00 0.00 2.17
5802 6654 6.639632 ACTATGCAAATAATCGCCAAATCT 57.360 33.333 0.00 0.00 0.00 2.40
5803 6655 7.744087 ACTATGCAAATAATCGCCAAATCTA 57.256 32.000 0.00 0.00 0.00 1.98
5804 6656 8.165239 ACTATGCAAATAATCGCCAAATCTAA 57.835 30.769 0.00 0.00 0.00 2.10
5805 6657 8.629158 ACTATGCAAATAATCGCCAAATCTAAA 58.371 29.630 0.00 0.00 0.00 1.85
5806 6658 9.462174 CTATGCAAATAATCGCCAAATCTAAAA 57.538 29.630 0.00 0.00 0.00 1.52
5807 6659 8.715191 ATGCAAATAATCGCCAAATCTAAAAA 57.285 26.923 0.00 0.00 0.00 1.94
5808 6660 7.958674 TGCAAATAATCGCCAAATCTAAAAAC 58.041 30.769 0.00 0.00 0.00 2.43
5809 6661 7.816995 TGCAAATAATCGCCAAATCTAAAAACT 59.183 29.630 0.00 0.00 0.00 2.66
5810 6662 9.296400 GCAAATAATCGCCAAATCTAAAAACTA 57.704 29.630 0.00 0.00 0.00 2.24
5834 6686 2.978156 AAAAATGCTCCTCAGACCCA 57.022 45.000 0.00 0.00 0.00 4.51
5835 6687 2.978156 AAAATGCTCCTCAGACCCAA 57.022 45.000 0.00 0.00 0.00 4.12
5836 6688 2.206576 AAATGCTCCTCAGACCCAAC 57.793 50.000 0.00 0.00 0.00 3.77
5837 6689 1.366319 AATGCTCCTCAGACCCAACT 58.634 50.000 0.00 0.00 0.00 3.16
5838 6690 1.366319 ATGCTCCTCAGACCCAACTT 58.634 50.000 0.00 0.00 0.00 2.66
5839 6691 2.024176 TGCTCCTCAGACCCAACTTA 57.976 50.000 0.00 0.00 0.00 2.24
5840 6692 2.334977 TGCTCCTCAGACCCAACTTAA 58.665 47.619 0.00 0.00 0.00 1.85
5841 6693 2.303022 TGCTCCTCAGACCCAACTTAAG 59.697 50.000 0.00 0.00 0.00 1.85
5842 6694 2.567615 GCTCCTCAGACCCAACTTAAGA 59.432 50.000 10.09 0.00 0.00 2.10
5843 6695 3.008049 GCTCCTCAGACCCAACTTAAGAA 59.992 47.826 10.09 0.00 0.00 2.52
5844 6696 4.505039 GCTCCTCAGACCCAACTTAAGAAA 60.505 45.833 10.09 0.00 0.00 2.52
5845 6697 4.969484 TCCTCAGACCCAACTTAAGAAAC 58.031 43.478 10.09 0.00 0.00 2.78
5846 6698 4.410883 TCCTCAGACCCAACTTAAGAAACA 59.589 41.667 10.09 0.00 0.00 2.83
5847 6699 4.757149 CCTCAGACCCAACTTAAGAAACAG 59.243 45.833 10.09 0.00 0.00 3.16
5848 6700 5.454755 CCTCAGACCCAACTTAAGAAACAGA 60.455 44.000 10.09 0.00 0.00 3.41
5849 6701 5.611374 TCAGACCCAACTTAAGAAACAGAG 58.389 41.667 10.09 0.00 0.00 3.35
5850 6702 5.365605 TCAGACCCAACTTAAGAAACAGAGA 59.634 40.000 10.09 0.00 0.00 3.10
5851 6703 5.698545 CAGACCCAACTTAAGAAACAGAGAG 59.301 44.000 10.09 0.00 0.00 3.20
5852 6704 5.367060 AGACCCAACTTAAGAAACAGAGAGT 59.633 40.000 10.09 0.00 0.00 3.24
5853 6705 5.612351 ACCCAACTTAAGAAACAGAGAGTC 58.388 41.667 10.09 0.00 0.00 3.36
5854 6706 5.130477 ACCCAACTTAAGAAACAGAGAGTCA 59.870 40.000 10.09 0.00 0.00 3.41
5855 6707 6.055588 CCCAACTTAAGAAACAGAGAGTCAA 58.944 40.000 10.09 0.00 0.00 3.18
5856 6708 6.542370 CCCAACTTAAGAAACAGAGAGTCAAA 59.458 38.462 10.09 0.00 0.00 2.69
5857 6709 7.229506 CCCAACTTAAGAAACAGAGAGTCAAAT 59.770 37.037 10.09 0.00 0.00 2.32
5858 6710 8.624776 CCAACTTAAGAAACAGAGAGTCAAATT 58.375 33.333 10.09 0.00 0.00 1.82
5930 6782 9.300681 TGATTTTGAAATTGATAGACAGAACCT 57.699 29.630 0.00 0.00 0.00 3.50
5934 6786 8.792830 TTGAAATTGATAGACAGAACCTAAGG 57.207 34.615 0.00 0.00 0.00 2.69
5935 6787 8.146053 TGAAATTGATAGACAGAACCTAAGGA 57.854 34.615 0.00 0.00 0.00 3.36
5936 6788 8.602424 TGAAATTGATAGACAGAACCTAAGGAA 58.398 33.333 0.00 0.00 0.00 3.36
5937 6789 9.449719 GAAATTGATAGACAGAACCTAAGGAAA 57.550 33.333 0.00 0.00 0.00 3.13
5938 6790 9.807921 AAATTGATAGACAGAACCTAAGGAAAA 57.192 29.630 0.00 0.00 0.00 2.29
5939 6791 9.454859 AATTGATAGACAGAACCTAAGGAAAAG 57.545 33.333 0.00 0.00 0.00 2.27
5940 6792 7.792364 TGATAGACAGAACCTAAGGAAAAGA 57.208 36.000 0.00 0.00 0.00 2.52
5941 6793 8.380742 TGATAGACAGAACCTAAGGAAAAGAT 57.619 34.615 0.00 0.00 0.00 2.40
5942 6794 8.826765 TGATAGACAGAACCTAAGGAAAAGATT 58.173 33.333 0.00 0.00 0.00 2.40
5943 6795 9.320352 GATAGACAGAACCTAAGGAAAAGATTC 57.680 37.037 0.00 0.00 34.66 2.52
5944 6796 7.323052 AGACAGAACCTAAGGAAAAGATTCT 57.677 36.000 0.00 0.00 35.79 2.40
5945 6797 7.750655 AGACAGAACCTAAGGAAAAGATTCTT 58.249 34.615 0.00 0.00 35.79 2.52
5946 6798 8.221251 AGACAGAACCTAAGGAAAAGATTCTTT 58.779 33.333 5.82 5.82 38.32 2.52
5947 6799 8.768501 ACAGAACCTAAGGAAAAGATTCTTTT 57.231 30.769 21.36 21.36 36.41 2.27
5948 6800 8.851145 ACAGAACCTAAGGAAAAGATTCTTTTC 58.149 33.333 30.83 30.83 36.41 2.29
5949 6801 9.072375 CAGAACCTAAGGAAAAGATTCTTTTCT 57.928 33.333 34.13 24.55 36.41 2.52
5950 6802 9.647918 AGAACCTAAGGAAAAGATTCTTTTCTT 57.352 29.630 34.13 29.15 37.74 2.52
5957 6809 8.367660 AGGAAAAGATTCTTTTCTTTATCCCC 57.632 34.615 34.13 23.09 43.42 4.81
5958 6810 7.955750 AGGAAAAGATTCTTTTCTTTATCCCCA 59.044 33.333 34.13 0.00 43.42 4.96
5959 6811 8.253810 GGAAAAGATTCTTTTCTTTATCCCCAG 58.746 37.037 34.13 0.00 43.42 4.45
5960 6812 8.956446 AAAAGATTCTTTTCTTTATCCCCAGA 57.044 30.769 16.82 0.00 43.42 3.86
5961 6813 8.956446 AAAGATTCTTTTCTTTATCCCCAGAA 57.044 30.769 5.82 0.00 42.63 3.02
5962 6814 8.956446 AAGATTCTTTTCTTTATCCCCAGAAA 57.044 30.769 0.00 0.00 37.26 2.52
5963 6815 8.956446 AGATTCTTTTCTTTATCCCCAGAAAA 57.044 30.769 6.84 6.84 43.54 2.29
5964 6816 9.379770 AGATTCTTTTCTTTATCCCCAGAAAAA 57.620 29.630 8.11 0.00 44.52 1.94
5965 6817 9.645059 GATTCTTTTCTTTATCCCCAGAAAAAG 57.355 33.333 8.11 0.00 44.52 2.27
5966 6818 6.993079 TCTTTTCTTTATCCCCAGAAAAAGC 58.007 36.000 8.11 0.00 44.52 3.51
5967 6819 6.553100 TCTTTTCTTTATCCCCAGAAAAAGCA 59.447 34.615 8.11 0.00 44.52 3.91
5968 6820 6.739331 TTTCTTTATCCCCAGAAAAAGCAA 57.261 33.333 0.00 0.00 36.33 3.91
5969 6821 6.739331 TTCTTTATCCCCAGAAAAAGCAAA 57.261 33.333 0.00 0.00 0.00 3.68
5970 6822 6.739331 TCTTTATCCCCAGAAAAAGCAAAA 57.261 33.333 0.00 0.00 0.00 2.44
5971 6823 7.315066 TCTTTATCCCCAGAAAAAGCAAAAT 57.685 32.000 0.00 0.00 0.00 1.82
5972 6824 7.744733 TCTTTATCCCCAGAAAAAGCAAAATT 58.255 30.769 0.00 0.00 0.00 1.82
5973 6825 7.877612 TCTTTATCCCCAGAAAAAGCAAAATTC 59.122 33.333 0.00 0.00 0.00 2.17
5974 6826 5.830799 ATCCCCAGAAAAAGCAAAATTCT 57.169 34.783 0.00 0.00 33.83 2.40
5975 6827 5.628797 TCCCCAGAAAAAGCAAAATTCTT 57.371 34.783 0.00 0.00 31.26 2.52
5976 6828 6.000246 TCCCCAGAAAAAGCAAAATTCTTT 58.000 33.333 0.00 0.00 35.47 2.52
5977 6829 5.821995 TCCCCAGAAAAAGCAAAATTCTTTG 59.178 36.000 0.00 0.00 44.11 2.77
5978 6830 5.008911 CCCCAGAAAAAGCAAAATTCTTTGG 59.991 40.000 0.23 0.00 41.96 3.28
5979 6831 5.821995 CCCAGAAAAAGCAAAATTCTTTGGA 59.178 36.000 0.23 0.00 41.96 3.53
5980 6832 6.318396 CCCAGAAAAAGCAAAATTCTTTGGAA 59.682 34.615 0.23 0.00 41.96 3.53
5981 6833 7.148103 CCCAGAAAAAGCAAAATTCTTTGGAAA 60.148 33.333 0.23 0.00 41.96 3.13
5982 6834 8.407832 CCAGAAAAAGCAAAATTCTTTGGAAAT 58.592 29.630 0.23 0.00 41.96 2.17
5983 6835 9.442033 CAGAAAAAGCAAAATTCTTTGGAAATC 57.558 29.630 0.23 0.00 41.96 2.17
5984 6836 9.399797 AGAAAAAGCAAAATTCTTTGGAAATCT 57.600 25.926 0.23 0.00 41.96 2.40
5986 6838 9.791820 AAAAAGCAAAATTCTTTGGAAATCTTG 57.208 25.926 0.23 0.00 41.96 3.02
5987 6839 8.510243 AAAGCAAAATTCTTTGGAAATCTTGT 57.490 26.923 0.23 0.00 41.96 3.16
5988 6840 8.510243 AAGCAAAATTCTTTGGAAATCTTGTT 57.490 26.923 0.23 0.00 41.96 2.83
5989 6841 9.612066 AAGCAAAATTCTTTGGAAATCTTGTTA 57.388 25.926 0.23 0.00 41.96 2.41
5990 6842 9.783081 AGCAAAATTCTTTGGAAATCTTGTTAT 57.217 25.926 0.23 0.00 41.96 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.686334 ACAAGACTTCAAAGAAAATCTAAAGCA 58.314 29.630 0.00 0.00 0.00 3.91
10 11 9.273016 CCACTACAAGACTTCAAAGAAAATCTA 57.727 33.333 0.00 0.00 0.00 1.98
21 22 4.202357 ACAATCAGCCACTACAAGACTTCA 60.202 41.667 0.00 0.00 0.00 3.02
33 34 4.572389 CCACATAGAGTTACAATCAGCCAC 59.428 45.833 0.00 0.00 0.00 5.01
69 77 4.577693 ACCCGTTTTTCTAGAAACTGAACC 59.422 41.667 17.51 4.62 37.37 3.62
79 87 7.500720 TTTCTCCTAAAACCCGTTTTTCTAG 57.499 36.000 10.58 3.25 42.22 2.43
138 146 6.960992 GCAAAGAATTCCAAAAACTTGTGTTC 59.039 34.615 0.65 0.00 34.96 3.18
163 171 9.528018 TTTGTAAAAACAGCTTCTTAATCCAAG 57.472 29.630 0.00 0.00 35.38 3.61
202 210 9.978044 TCATTCAGATCAATGTGTCTAATCTAG 57.022 33.333 0.00 0.00 35.56 2.43
213 221 8.051535 ACTTATCCAGTTCATTCAGATCAATGT 58.948 33.333 0.00 0.00 35.56 2.71
267 275 9.925268 CTAAAACACGTTTAAGACTAACATTGT 57.075 29.630 0.00 0.00 31.22 2.71
298 306 7.499895 TGTTTGGTTTCCTCTAAAGTCGTTTAT 59.500 33.333 0.00 0.00 0.00 1.40
305 313 4.337274 CGGTTGTTTGGTTTCCTCTAAAGT 59.663 41.667 0.00 0.00 0.00 2.66
306 314 4.577283 TCGGTTGTTTGGTTTCCTCTAAAG 59.423 41.667 0.00 0.00 0.00 1.85
334 342 2.358322 TCCAGTTTGGTTTCCTGACC 57.642 50.000 0.00 0.00 39.03 4.02
335 343 4.459337 CCTTATCCAGTTTGGTTTCCTGAC 59.541 45.833 0.00 0.00 39.03 3.51
336 344 4.508405 CCCTTATCCAGTTTGGTTTCCTGA 60.508 45.833 0.00 0.00 39.03 3.86
337 345 3.763897 CCCTTATCCAGTTTGGTTTCCTG 59.236 47.826 0.00 0.00 39.03 3.86
399 407 5.903010 AGGGAGTTTTTATTCCAAACCAGTT 59.097 36.000 0.00 0.00 35.10 3.16
401 409 6.267699 AGAAGGGAGTTTTTATTCCAAACCAG 59.732 38.462 0.00 0.00 35.10 4.00
467 475 5.703130 GCCATGGCAAAATAAGGTTGTTAAA 59.297 36.000 32.08 0.00 41.49 1.52
468 476 5.241662 GCCATGGCAAAATAAGGTTGTTAA 58.758 37.500 32.08 0.00 41.49 2.01
469 477 4.323104 GGCCATGGCAAAATAAGGTTGTTA 60.323 41.667 36.56 0.00 44.11 2.41
471 479 2.027285 GGCCATGGCAAAATAAGGTTGT 60.027 45.455 36.56 0.00 44.11 3.32
472 480 2.631267 GGCCATGGCAAAATAAGGTTG 58.369 47.619 36.56 0.00 44.11 3.77
528 536 1.737793 GTATGACTTTGACCCGCTTGG 59.262 52.381 0.00 0.00 41.37 3.61
535 543 2.541556 GAGGAGCGTATGACTTTGACC 58.458 52.381 0.00 0.00 0.00 4.02
568 576 3.745803 GCCAAGAGTGCTGCTGCC 61.746 66.667 13.47 4.62 38.71 4.85
611 619 3.532155 GAGGAGGCTGCGGACGAT 61.532 66.667 0.00 0.00 0.00 3.73
754 762 4.537015 GCTGGATTTATAATGTTGGCGAC 58.463 43.478 0.00 0.00 0.00 5.19
755 763 3.249799 CGCTGGATTTATAATGTTGGCGA 59.750 43.478 13.49 0.00 41.07 5.54
756 764 3.554524 CGCTGGATTTATAATGTTGGCG 58.445 45.455 0.00 0.00 0.00 5.69
757 765 3.308530 GCGCTGGATTTATAATGTTGGC 58.691 45.455 0.00 0.00 0.00 4.52
758 766 3.305335 GGGCGCTGGATTTATAATGTTGG 60.305 47.826 7.64 0.00 0.00 3.77
759 767 3.609175 CGGGCGCTGGATTTATAATGTTG 60.609 47.826 7.64 0.00 0.00 3.33
760 768 2.552315 CGGGCGCTGGATTTATAATGTT 59.448 45.455 7.64 0.00 0.00 2.71
818 826 2.879103 TTCTTTCTTGGGCTGTAGGG 57.121 50.000 0.00 0.00 0.00 3.53
819 827 3.888930 TGTTTTCTTTCTTGGGCTGTAGG 59.111 43.478 0.00 0.00 0.00 3.18
863 871 9.828039 CTCCCGTGAGCCGTATATATATATATA 57.172 37.037 15.61 15.61 31.69 0.86
864 872 8.327271 ACTCCCGTGAGCCGTATATATATATAT 58.673 37.037 17.37 17.37 42.74 0.86
865 873 7.683578 ACTCCCGTGAGCCGTATATATATATA 58.316 38.462 8.16 8.16 42.74 0.86
866 874 6.540995 ACTCCCGTGAGCCGTATATATATAT 58.459 40.000 10.10 10.10 42.74 0.86
867 875 5.933617 ACTCCCGTGAGCCGTATATATATA 58.066 41.667 0.00 0.00 42.74 0.86
868 876 4.789807 ACTCCCGTGAGCCGTATATATAT 58.210 43.478 0.00 0.00 42.74 0.86
869 877 4.226427 ACTCCCGTGAGCCGTATATATA 57.774 45.455 0.00 0.00 42.74 0.86
902 910 0.560688 ACAGGGGCAGGGAAAAGAAA 59.439 50.000 0.00 0.00 0.00 2.52
966 975 2.434359 GAACAGAACCCGCCGGAG 60.434 66.667 5.05 0.00 0.00 4.63
967 976 4.367023 CGAACAGAACCCGCCGGA 62.367 66.667 5.05 0.00 0.00 5.14
971 980 3.110178 CCGACGAACAGAACCCGC 61.110 66.667 0.00 0.00 0.00 6.13
985 994 3.911698 CATGATCCCGACGCCCGA 61.912 66.667 0.00 0.00 41.76 5.14
986 995 4.969196 CCATGATCCCGACGCCCG 62.969 72.222 0.00 0.00 38.18 6.13
987 996 3.861797 ACCATGATCCCGACGCCC 61.862 66.667 0.00 0.00 0.00 6.13
1134 1146 3.104602 CTTGATCTTGCTGCCGCCG 62.105 63.158 0.00 0.00 34.43 6.46
1195 1207 1.527370 GATTGAGAAGGGTCGGGGG 59.473 63.158 0.00 0.00 0.00 5.40
1210 1222 8.004215 TGTATTTACCATAAGCAGATTGGGATT 58.996 33.333 0.00 0.00 34.72 3.01
1296 1308 6.861572 AGCAAATCGATGAAATTCATATGCAG 59.138 34.615 21.00 9.51 37.20 4.41
1304 1316 9.507280 TCATTAGAAAGCAAATCGATGAAATTC 57.493 29.630 0.00 1.06 0.00 2.17
1306 1318 7.646922 GCTCATTAGAAAGCAAATCGATGAAAT 59.353 33.333 0.00 0.00 38.42 2.17
1325 1337 4.818546 GCTTCCTGCTCTTAATGCTCATTA 59.181 41.667 0.00 0.00 38.95 1.90
1378 1393 4.081406 ACAATGAACTTGATGCTAAGGCA 58.919 39.130 0.00 0.00 44.32 4.75
1441 1459 6.804303 ACTAGTAGTAGTTGGCTTCACTAGCT 60.804 42.308 0.00 0.00 42.18 3.32
1443 1461 7.551974 TGTACTAGTAGTAGTTGGCTTCACTAG 59.448 40.741 15.34 0.00 40.23 2.57
1444 1462 7.397221 TGTACTAGTAGTAGTTGGCTTCACTA 58.603 38.462 15.34 0.00 40.23 2.74
1445 1463 6.243900 TGTACTAGTAGTAGTTGGCTTCACT 58.756 40.000 15.34 0.00 40.23 3.41
1446 1464 6.506500 TGTACTAGTAGTAGTTGGCTTCAC 57.493 41.667 15.34 6.58 40.23 3.18
1447 1465 8.051535 ACTATGTACTAGTAGTAGTTGGCTTCA 58.948 37.037 15.34 3.27 38.96 3.02
1448 1466 8.449251 ACTATGTACTAGTAGTAGTTGGCTTC 57.551 38.462 15.34 0.00 38.96 3.86
1460 1478 6.066690 CCAACCCAGCTACTATGTACTAGTA 58.933 44.000 0.00 0.00 41.10 1.82
1461 1479 4.894114 CCAACCCAGCTACTATGTACTAGT 59.106 45.833 0.00 0.00 43.28 2.57
1462 1480 4.894114 ACCAACCCAGCTACTATGTACTAG 59.106 45.833 0.00 0.00 0.00 2.57
1463 1481 4.647853 CACCAACCCAGCTACTATGTACTA 59.352 45.833 0.00 0.00 0.00 1.82
1464 1482 3.451178 CACCAACCCAGCTACTATGTACT 59.549 47.826 0.00 0.00 0.00 2.73
1465 1483 3.431766 CCACCAACCCAGCTACTATGTAC 60.432 52.174 0.00 0.00 0.00 2.90
1466 1484 2.769663 CCACCAACCCAGCTACTATGTA 59.230 50.000 0.00 0.00 0.00 2.29
1467 1485 1.559682 CCACCAACCCAGCTACTATGT 59.440 52.381 0.00 0.00 0.00 2.29
1468 1486 1.747206 GCCACCAACCCAGCTACTATG 60.747 57.143 0.00 0.00 0.00 2.23
1469 1487 0.546598 GCCACCAACCCAGCTACTAT 59.453 55.000 0.00 0.00 0.00 2.12
1470 1488 1.895020 CGCCACCAACCCAGCTACTA 61.895 60.000 0.00 0.00 0.00 1.82
1471 1489 2.757077 GCCACCAACCCAGCTACT 59.243 61.111 0.00 0.00 0.00 2.57
1472 1490 2.746277 CGCCACCAACCCAGCTAC 60.746 66.667 0.00 0.00 0.00 3.58
1473 1491 2.925706 TCGCCACCAACCCAGCTA 60.926 61.111 0.00 0.00 0.00 3.32
1474 1492 4.335647 CTCGCCACCAACCCAGCT 62.336 66.667 0.00 0.00 0.00 4.24
1497 1515 1.728971 CCATCTGTCAGCACGAGAAAC 59.271 52.381 0.00 0.00 0.00 2.78
1790 1809 3.064820 CGTTCGCAGGCCAGTTATTAAAT 59.935 43.478 5.01 0.00 0.00 1.40
1873 1892 6.697019 CACTTCGTTGAAATTCAAGTCCAAAT 59.303 34.615 8.88 0.00 37.00 2.32
2145 2182 7.334921 AGCTACTATGGTTCTAATAGCGAGTAG 59.665 40.741 0.00 0.00 39.96 2.57
2277 2314 3.971245 ACAAGCCTTCTTCACTCCTAG 57.029 47.619 0.00 0.00 0.00 3.02
2350 2387 2.979676 CGCTTGTCCTTGCCAGCA 60.980 61.111 0.00 0.00 0.00 4.41
2371 2408 0.321564 CCCTGGATTCACGCTTGACA 60.322 55.000 0.00 0.00 0.00 3.58
2563 2600 4.313282 GACTAAACTTCCCACACACCTAC 58.687 47.826 0.00 0.00 0.00 3.18
3503 4163 1.450312 CTTGATCAGGGTGCCCGAC 60.450 63.158 0.98 0.00 41.95 4.79
3663 4341 3.847621 CGACTACATCTTCGCCGAT 57.152 52.632 0.00 0.00 0.00 4.18
3734 4412 8.616799 AAGAGAAGATAAGAGAACCTACCAAT 57.383 34.615 0.00 0.00 0.00 3.16
3798 4476 3.123621 CCAACAGAAGATCGTGTTAGTGC 59.876 47.826 9.83 0.00 35.10 4.40
4451 5278 6.937436 TCTCTAACATTACTGATCGCTACA 57.063 37.500 0.00 0.00 0.00 2.74
4799 5626 0.383949 GCGATGACTGTCCTCCTCTC 59.616 60.000 5.17 0.00 0.00 3.20
4921 5748 1.264288 GAACCGTCCTTTGTGAGCTTG 59.736 52.381 0.00 0.00 0.00 4.01
5001 5828 6.428159 TCAAATAACTGTCTGAGAAAAGCTCC 59.572 38.462 0.00 0.00 43.26 4.70
5084 5921 3.094484 AGGCGGACCCATTTTGATTAA 57.906 42.857 0.00 0.00 36.11 1.40
5086 5923 1.937191 AAGGCGGACCCATTTTGATT 58.063 45.000 0.00 0.00 36.11 2.57
5095 5932 1.607148 GCAAACATATAAGGCGGACCC 59.393 52.381 0.00 0.00 36.11 4.46
5096 5933 2.290641 CAGCAAACATATAAGGCGGACC 59.709 50.000 0.00 0.00 0.00 4.46
5097 5934 2.943033 ACAGCAAACATATAAGGCGGAC 59.057 45.455 0.00 0.00 0.00 4.79
5098 5935 3.275617 ACAGCAAACATATAAGGCGGA 57.724 42.857 0.00 0.00 0.00 5.54
5099 5936 3.376859 TCAACAGCAAACATATAAGGCGG 59.623 43.478 0.00 0.00 0.00 6.13
5100 5937 4.614555 TCAACAGCAAACATATAAGGCG 57.385 40.909 0.00 0.00 0.00 5.52
5101 5938 5.289434 GCTTTCAACAGCAAACATATAAGGC 59.711 40.000 0.00 0.00 39.83 4.35
5102 5939 6.624423 AGCTTTCAACAGCAAACATATAAGG 58.376 36.000 0.00 0.00 42.84 2.69
5103 5940 6.749118 GGAGCTTTCAACAGCAAACATATAAG 59.251 38.462 0.00 0.00 42.84 1.73
5104 5941 6.208402 TGGAGCTTTCAACAGCAAACATATAA 59.792 34.615 0.00 0.00 42.84 0.98
5105 5942 5.709631 TGGAGCTTTCAACAGCAAACATATA 59.290 36.000 0.00 0.00 42.84 0.86
5109 5946 2.098614 TGGAGCTTTCAACAGCAAACA 58.901 42.857 0.00 0.00 42.84 2.83
5121 5958 3.567478 AACTTCAGACACTGGAGCTTT 57.433 42.857 6.94 0.00 40.58 3.51
5142 5979 2.093181 ACACCACAGTAGTTCAGTTGCA 60.093 45.455 0.00 0.00 0.00 4.08
5144 5981 3.560068 GGAACACCACAGTAGTTCAGTTG 59.440 47.826 12.28 0.00 42.50 3.16
5165 6002 6.753107 AACGTCCTAAATTGGTTTCTATGG 57.247 37.500 0.00 0.00 0.00 2.74
5186 6031 2.092592 ACCTTCCGGATATGTGGGAAAC 60.093 50.000 4.15 0.00 39.22 2.78
5189 6034 1.887797 AACCTTCCGGATATGTGGGA 58.112 50.000 4.15 0.00 0.00 4.37
5192 6037 4.006989 TCACAAAACCTTCCGGATATGTG 58.993 43.478 4.15 14.10 39.46 3.21
5207 6052 2.167487 GCCCTGTTCCACTTTCACAAAA 59.833 45.455 0.00 0.00 0.00 2.44
5239 6085 3.303395 GCTCTGTTTTCAGTTGTTCGGAG 60.303 47.826 0.00 0.00 46.98 4.63
5248 6094 8.854614 AATTAGTAATCAGCTCTGTTTTCAGT 57.145 30.769 0.00 0.00 46.98 3.41
5256 6102 9.545105 AGATTCAGAAATTAGTAATCAGCTCTG 57.455 33.333 13.18 13.18 0.00 3.35
5272 6118 5.310409 AGGTCTTCCACAAGATTCAGAAA 57.690 39.130 0.00 0.00 40.88 2.52
5281 6128 2.808543 GCTACACAAGGTCTTCCACAAG 59.191 50.000 0.00 0.00 35.89 3.16
5340 6188 7.771361 TCCTGTCTAGTACTCAAGAGTTATCTG 59.229 40.741 8.17 0.00 42.54 2.90
5349 6197 6.576662 TTTCACTCCTGTCTAGTACTCAAG 57.423 41.667 0.00 0.00 0.00 3.02
5351 6199 7.631007 TCTATTTCACTCCTGTCTAGTACTCA 58.369 38.462 0.00 0.00 0.00 3.41
5352 6200 8.685838 ATCTATTTCACTCCTGTCTAGTACTC 57.314 38.462 0.00 0.00 0.00 2.59
5353 6201 9.482175 AAATCTATTTCACTCCTGTCTAGTACT 57.518 33.333 0.00 0.00 0.00 2.73
5356 6204 8.602472 AGAAATCTATTTCACTCCTGTCTAGT 57.398 34.615 15.76 0.00 46.50 2.57
5357 6205 9.883142 AAAGAAATCTATTTCACTCCTGTCTAG 57.117 33.333 15.76 0.00 46.50 2.43
5417 6265 3.851128 GCAGAGGCCGGGGTACTC 61.851 72.222 2.18 0.00 0.00 2.59
5418 6266 4.715130 TGCAGAGGCCGGGGTACT 62.715 66.667 2.18 0.00 40.13 2.73
5420 6268 3.161450 GATGCAGAGGCCGGGGTA 61.161 66.667 2.18 0.00 40.13 3.69
5427 6275 0.174389 TTCTCTCACGATGCAGAGGC 59.826 55.000 0.00 0.00 37.37 4.70
5439 6287 3.194861 CAGTGAAACCGTGTTTCTCTCA 58.805 45.455 21.01 7.51 37.80 3.27
5442 6290 1.002792 GGCAGTGAAACCGTGTTTCTC 60.003 52.381 21.90 19.32 37.80 2.87
5448 6296 0.865769 GTAGTGGCAGTGAAACCGTG 59.134 55.000 4.76 0.00 37.80 4.94
5450 6298 1.588674 TTGTAGTGGCAGTGAAACCG 58.411 50.000 4.76 0.00 37.80 4.44
5452 6300 5.572896 GCATATTTTGTAGTGGCAGTGAAAC 59.427 40.000 4.76 0.00 0.00 2.78
5454 6302 4.157656 GGCATATTTTGTAGTGGCAGTGAA 59.842 41.667 4.76 0.00 37.14 3.18
5455 6303 3.694072 GGCATATTTTGTAGTGGCAGTGA 59.306 43.478 4.76 0.00 37.14 3.41
5456 6304 3.181487 GGGCATATTTTGTAGTGGCAGTG 60.181 47.826 4.76 0.00 38.72 3.66
5457 6305 3.023832 GGGCATATTTTGTAGTGGCAGT 58.976 45.455 0.00 0.00 38.72 4.40
5515 6363 7.243604 TGGGAGAAACAAAAGCATTGATAAT 57.756 32.000 9.00 0.00 0.00 1.28
5523 6371 5.792741 CCAAATATGGGAGAAACAAAAGCA 58.207 37.500 0.00 0.00 43.51 3.91
5589 6437 8.424274 ACATTGAAAAGAAAGAAAACATGGTC 57.576 30.769 0.00 0.00 0.00 4.02
5622 6471 4.695217 TGCCAAGAATTCGGTATTTGTC 57.305 40.909 0.00 0.00 0.00 3.18
5666 6518 9.965824 AAAGATATGTTGGTTTGTGTCTAAAAG 57.034 29.630 0.00 0.00 0.00 2.27
5682 6534 7.458397 TCTACCAACTCCAACAAAGATATGTT 58.542 34.615 0.00 0.00 44.08 2.71
5692 6544 7.147549 CCCTAGATTATTCTACCAACTCCAACA 60.148 40.741 0.00 0.00 33.17 3.33
5713 6565 6.631962 AGAAACGAATGTCTTCTTACCCTAG 58.368 40.000 0.00 0.00 0.00 3.02
5725 6577 7.750458 TCAAGCAATATTTGAGAAACGAATGTC 59.250 33.333 0.00 0.00 34.72 3.06
5749 6601 2.430465 GAGGACCGTAGTGTACACTCA 58.570 52.381 31.11 15.13 42.54 3.41
5750 6602 1.396301 CGAGGACCGTAGTGTACACTC 59.604 57.143 31.11 20.33 42.54 3.51
5751 6603 1.002430 TCGAGGACCGTAGTGTACACT 59.998 52.381 30.13 30.13 40.16 3.55
5752 6604 1.129437 GTCGAGGACCGTAGTGTACAC 59.871 57.143 18.56 18.56 39.75 2.90
5753 6605 1.002430 AGTCGAGGACCGTAGTGTACA 59.998 52.381 0.00 0.00 39.75 2.90
5754 6606 1.663135 GAGTCGAGGACCGTAGTGTAC 59.337 57.143 0.00 0.00 39.75 2.90
5755 6607 1.552337 AGAGTCGAGGACCGTAGTGTA 59.448 52.381 0.00 0.00 39.75 2.90
5756 6608 0.324285 AGAGTCGAGGACCGTAGTGT 59.676 55.000 0.00 0.00 39.75 3.55
5757 6609 2.306341 TAGAGTCGAGGACCGTAGTG 57.694 55.000 0.00 0.00 39.75 2.74
5758 6610 3.340814 TTTAGAGTCGAGGACCGTAGT 57.659 47.619 0.00 0.00 39.75 2.73
5759 6611 3.688673 AGTTTTAGAGTCGAGGACCGTAG 59.311 47.826 0.00 0.00 39.75 3.51
5760 6612 3.679389 AGTTTTAGAGTCGAGGACCGTA 58.321 45.455 0.00 0.00 39.75 4.02
5761 6613 2.512705 AGTTTTAGAGTCGAGGACCGT 58.487 47.619 0.00 0.00 39.75 4.83
5762 6614 4.599047 CATAGTTTTAGAGTCGAGGACCG 58.401 47.826 0.00 0.00 40.25 4.79
5763 6615 4.142227 TGCATAGTTTTAGAGTCGAGGACC 60.142 45.833 0.00 0.00 32.18 4.46
5764 6616 4.995124 TGCATAGTTTTAGAGTCGAGGAC 58.005 43.478 0.00 0.00 0.00 3.85
5765 6617 5.654603 TTGCATAGTTTTAGAGTCGAGGA 57.345 39.130 0.00 0.00 0.00 3.71
5766 6618 6.910536 ATTTGCATAGTTTTAGAGTCGAGG 57.089 37.500 0.00 0.00 0.00 4.63
5783 6635 7.816995 AGTTTTTAGATTTGGCGATTATTTGCA 59.183 29.630 0.00 0.00 33.51 4.08
5815 6667 2.893489 GTTGGGTCTGAGGAGCATTTTT 59.107 45.455 0.00 0.00 41.29 1.94
5816 6668 2.108952 AGTTGGGTCTGAGGAGCATTTT 59.891 45.455 0.00 0.00 41.29 1.82
5817 6669 1.707427 AGTTGGGTCTGAGGAGCATTT 59.293 47.619 0.00 0.00 41.29 2.32
5818 6670 1.366319 AGTTGGGTCTGAGGAGCATT 58.634 50.000 0.00 0.00 41.29 3.56
5819 6671 1.366319 AAGTTGGGTCTGAGGAGCAT 58.634 50.000 0.00 0.00 41.29 3.79
5820 6672 2.024176 TAAGTTGGGTCTGAGGAGCA 57.976 50.000 0.00 0.00 41.29 4.26
5821 6673 2.567615 TCTTAAGTTGGGTCTGAGGAGC 59.432 50.000 1.63 0.00 39.05 4.70
5822 6674 4.891992 TTCTTAAGTTGGGTCTGAGGAG 57.108 45.455 1.63 0.00 0.00 3.69
5823 6675 4.410883 TGTTTCTTAAGTTGGGTCTGAGGA 59.589 41.667 1.63 0.00 0.00 3.71
5824 6676 4.714632 TGTTTCTTAAGTTGGGTCTGAGG 58.285 43.478 1.63 0.00 0.00 3.86
5825 6677 5.611374 TCTGTTTCTTAAGTTGGGTCTGAG 58.389 41.667 1.63 0.00 0.00 3.35
5826 6678 5.365605 TCTCTGTTTCTTAAGTTGGGTCTGA 59.634 40.000 1.63 0.00 0.00 3.27
5827 6679 5.611374 TCTCTGTTTCTTAAGTTGGGTCTG 58.389 41.667 1.63 0.00 0.00 3.51
5828 6680 5.367060 ACTCTCTGTTTCTTAAGTTGGGTCT 59.633 40.000 1.63 0.00 0.00 3.85
5829 6681 5.612351 ACTCTCTGTTTCTTAAGTTGGGTC 58.388 41.667 1.63 0.00 0.00 4.46
5830 6682 5.130477 TGACTCTCTGTTTCTTAAGTTGGGT 59.870 40.000 1.63 0.00 0.00 4.51
5831 6683 5.611374 TGACTCTCTGTTTCTTAAGTTGGG 58.389 41.667 1.63 0.00 0.00 4.12
5832 6684 7.553881 TTTGACTCTCTGTTTCTTAAGTTGG 57.446 36.000 1.63 0.00 0.00 3.77
5904 6756 9.300681 AGGTTCTGTCTATCAATTTCAAAATCA 57.699 29.630 0.00 0.00 0.00 2.57
5908 6760 9.231297 CCTTAGGTTCTGTCTATCAATTTCAAA 57.769 33.333 0.00 0.00 0.00 2.69
5909 6761 8.602424 TCCTTAGGTTCTGTCTATCAATTTCAA 58.398 33.333 0.00 0.00 0.00 2.69
5910 6762 8.146053 TCCTTAGGTTCTGTCTATCAATTTCA 57.854 34.615 0.00 0.00 0.00 2.69
5911 6763 9.449719 TTTCCTTAGGTTCTGTCTATCAATTTC 57.550 33.333 0.00 0.00 0.00 2.17
5912 6764 9.807921 TTTTCCTTAGGTTCTGTCTATCAATTT 57.192 29.630 0.00 0.00 0.00 1.82
5913 6765 9.454859 CTTTTCCTTAGGTTCTGTCTATCAATT 57.545 33.333 0.00 0.00 0.00 2.32
5914 6766 8.826765 TCTTTTCCTTAGGTTCTGTCTATCAAT 58.173 33.333 0.00 0.00 0.00 2.57
5915 6767 8.202461 TCTTTTCCTTAGGTTCTGTCTATCAA 57.798 34.615 0.00 0.00 0.00 2.57
5916 6768 7.792364 TCTTTTCCTTAGGTTCTGTCTATCA 57.208 36.000 0.00 0.00 0.00 2.15
5917 6769 9.320352 GAATCTTTTCCTTAGGTTCTGTCTATC 57.680 37.037 0.00 0.00 31.48 2.08
5918 6770 9.052365 AGAATCTTTTCCTTAGGTTCTGTCTAT 57.948 33.333 0.00 0.00 40.61 1.98
5919 6771 8.437274 AGAATCTTTTCCTTAGGTTCTGTCTA 57.563 34.615 0.00 0.00 40.61 2.59
5920 6772 7.323052 AGAATCTTTTCCTTAGGTTCTGTCT 57.677 36.000 0.00 0.00 40.61 3.41
5921 6773 7.987750 AAGAATCTTTTCCTTAGGTTCTGTC 57.012 36.000 0.00 0.00 41.12 3.51
5922 6774 8.768501 AAAAGAATCTTTTCCTTAGGTTCTGT 57.231 30.769 14.63 0.00 41.12 3.41
5923 6775 9.072375 AGAAAAGAATCTTTTCCTTAGGTTCTG 57.928 33.333 32.70 0.00 41.12 3.02
5924 6776 9.647918 AAGAAAAGAATCTTTTCCTTAGGTTCT 57.352 29.630 32.70 16.41 43.21 3.01
5931 6783 8.816894 GGGGATAAAGAAAAGAATCTTTTCCTT 58.183 33.333 32.70 29.22 45.05 3.36
5932 6784 7.955750 TGGGGATAAAGAAAAGAATCTTTTCCT 59.044 33.333 32.70 25.29 45.05 3.36
5933 6785 8.134202 TGGGGATAAAGAAAAGAATCTTTTCC 57.866 34.615 32.70 22.44 45.05 3.13
5934 6786 9.025041 TCTGGGGATAAAGAAAAGAATCTTTTC 57.975 33.333 30.67 30.67 45.05 2.29
5935 6787 8.956446 TCTGGGGATAAAGAAAAGAATCTTTT 57.044 30.769 19.65 19.65 45.05 2.27
5937 6789 8.956446 TTTCTGGGGATAAAGAAAAGAATCTT 57.044 30.769 0.00 0.00 38.98 2.40
5938 6790 8.956446 TTTTCTGGGGATAAAGAAAAGAATCT 57.044 30.769 6.51 0.00 43.80 2.40
5944 6796 6.739331 TGCTTTTTCTGGGGATAAAGAAAA 57.261 33.333 6.51 6.51 45.81 2.29
5945 6797 6.739331 TTGCTTTTTCTGGGGATAAAGAAA 57.261 33.333 11.16 5.95 40.47 2.52
5946 6798 6.739331 TTTGCTTTTTCTGGGGATAAAGAA 57.261 33.333 11.16 1.01 40.47 2.52
5947 6799 6.739331 TTTTGCTTTTTCTGGGGATAAAGA 57.261 33.333 11.16 0.00 40.47 2.52
5948 6800 7.879677 AGAATTTTGCTTTTTCTGGGGATAAAG 59.120 33.333 0.00 0.00 40.75 1.85
5949 6801 7.744733 AGAATTTTGCTTTTTCTGGGGATAAA 58.255 30.769 0.00 0.00 0.00 1.40
5950 6802 7.315066 AGAATTTTGCTTTTTCTGGGGATAA 57.685 32.000 0.00 0.00 0.00 1.75
5951 6803 6.933514 AGAATTTTGCTTTTTCTGGGGATA 57.066 33.333 0.00 0.00 0.00 2.59
5952 6804 5.830799 AGAATTTTGCTTTTTCTGGGGAT 57.169 34.783 0.00 0.00 0.00 3.85
5953 6805 5.628797 AAGAATTTTGCTTTTTCTGGGGA 57.371 34.783 0.00 0.00 30.41 4.81
5954 6806 5.008911 CCAAAGAATTTTGCTTTTTCTGGGG 59.991 40.000 0.00 0.00 41.87 4.96
5955 6807 5.821995 TCCAAAGAATTTTGCTTTTTCTGGG 59.178 36.000 0.00 0.00 41.87 4.45
5956 6808 6.923928 TCCAAAGAATTTTGCTTTTTCTGG 57.076 33.333 0.00 0.00 41.87 3.86
5957 6809 9.442033 GATTTCCAAAGAATTTTGCTTTTTCTG 57.558 29.630 0.00 0.00 41.87 3.02
5958 6810 9.399797 AGATTTCCAAAGAATTTTGCTTTTTCT 57.600 25.926 0.00 0.00 41.87 2.52
5960 6812 9.791820 CAAGATTTCCAAAGAATTTTGCTTTTT 57.208 25.926 0.00 0.00 41.87 1.94
5961 6813 8.959548 ACAAGATTTCCAAAGAATTTTGCTTTT 58.040 25.926 0.00 0.00 41.87 2.27
5962 6814 8.510243 ACAAGATTTCCAAAGAATTTTGCTTT 57.490 26.923 0.00 0.00 41.87 3.51
5963 6815 8.510243 AACAAGATTTCCAAAGAATTTTGCTT 57.490 26.923 0.00 0.00 41.87 3.91
5964 6816 9.783081 ATAACAAGATTTCCAAAGAATTTTGCT 57.217 25.926 0.00 0.00 41.87 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.