Multiple sequence alignment - TraesCS1A01G122000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G122000 chr1A 100.000 4623 0 0 1 4623 135972608 135967986 0.000000e+00 8538.0
1 TraesCS1A01G122000 chr1A 91.753 97 8 0 1 97 136069240 136069144 8.070000e-28 135.0
2 TraesCS1A01G122000 chr1A 81.481 108 16 4 2718 2822 471324221 471324115 8.240000e-13 86.1
3 TraesCS1A01G122000 chr1A 82.000 100 14 4 2726 2822 471324115 471324213 1.070000e-11 82.4
4 TraesCS1A01G122000 chr1D 94.421 4642 179 34 1 4623 123704440 123699860 0.000000e+00 7064.0
5 TraesCS1A01G122000 chr1B 93.731 4642 211 38 1 4623 188266232 188261652 0.000000e+00 6887.0
6 TraesCS1A01G122000 chr6B 81.250 112 21 0 2711 2822 574023741 574023852 1.770000e-14 91.6
7 TraesCS1A01G122000 chr6A 83.000 100 17 0 2726 2825 472520796 472520697 1.770000e-14 91.6
8 TraesCS1A01G122000 chr7B 81.818 99 14 4 2726 2822 245070347 245070443 3.830000e-11 80.5
9 TraesCS1A01G122000 chr3B 80.357 112 15 7 2726 2833 705916982 705917090 1.380000e-10 78.7
10 TraesCS1A01G122000 chr7D 79.279 111 18 5 2715 2822 128787747 128787639 6.420000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G122000 chr1A 135967986 135972608 4622 True 8538 8538 100.000 1 4623 1 chr1A.!!$R1 4622
1 TraesCS1A01G122000 chr1D 123699860 123704440 4580 True 7064 7064 94.421 1 4623 1 chr1D.!!$R1 4622
2 TraesCS1A01G122000 chr1B 188261652 188266232 4580 True 6887 6887 93.731 1 4623 1 chr1B.!!$R1 4622

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 330 0.035915 GAAAGAGCTGGAGGGGTGAC 60.036 60.000 0.00 0.00 0.00 3.67 F
491 505 1.064463 CCAGCATACACCCCTGACAAT 60.064 52.381 0.00 0.00 0.00 2.71 F
1759 1786 1.448540 CTAGCCAGGGTTGCTGACG 60.449 63.158 0.00 0.00 39.91 4.35 F
2573 2602 1.338674 TGGCTACAGTGTGCACATACC 60.339 52.381 24.69 17.32 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1532 1.918262 TCTGGGATTGGATCTGCAACT 59.082 47.619 0.0 0.0 0.00 3.16 R
2022 2050 2.111792 AGGTAATGGAACCCAGCCTTTT 59.888 45.455 0.0 0.0 40.71 2.27 R
3571 3611 0.673644 CCGGGTCTCGTGCAAAGATT 60.674 55.000 0.0 0.0 37.11 2.40 R
4317 4357 0.392998 ACCTCCACAACATGATCGGC 60.393 55.000 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.040339 CCACTACTTTCCTGCCCAAATTTT 59.960 41.667 0.00 0.00 0.00 1.82
70 71 7.706281 ATTTCTCTTATGAACATGTCTAGCG 57.294 36.000 0.00 0.00 0.00 4.26
132 133 2.731801 CTATAGGGAGAGGGGCGCCA 62.732 65.000 30.85 3.80 38.36 5.69
154 155 5.139727 CAGAGAGGTGAATAGAGAGATGGT 58.860 45.833 0.00 0.00 0.00 3.55
156 157 4.877773 AGAGGTGAATAGAGAGATGGTGT 58.122 43.478 0.00 0.00 0.00 4.16
194 195 3.931247 CGTGTTGGGGTGGGTCGA 61.931 66.667 0.00 0.00 0.00 4.20
205 212 1.663695 GTGGGTCGAGAGAGAGAGAG 58.336 60.000 0.00 0.00 43.49 3.20
229 236 9.971922 GAGAGATTTGGAGAGAAAAATGAAAAA 57.028 29.630 0.00 0.00 0.00 1.94
235 242 5.307716 TGGAGAGAAAAATGAAAAATGGGCT 59.692 36.000 0.00 0.00 0.00 5.19
273 287 4.342862 TCATATGTGCTAGGCTTTCTCC 57.657 45.455 1.90 0.00 0.00 3.71
274 288 3.969976 TCATATGTGCTAGGCTTTCTCCT 59.030 43.478 1.90 0.00 40.21 3.69
304 318 3.429135 CCTCGTAGGGTTAGTGAAAGAGC 60.429 52.174 0.00 0.00 0.00 4.09
315 329 0.473694 TGAAAGAGCTGGAGGGGTGA 60.474 55.000 0.00 0.00 0.00 4.02
316 330 0.035915 GAAAGAGCTGGAGGGGTGAC 60.036 60.000 0.00 0.00 0.00 3.67
399 413 5.163723 TGGCTCGAGATTGAATCAAAATCAC 60.164 40.000 18.75 0.00 36.65 3.06
425 439 1.747206 GCCGAATATGAGCCACCTGTT 60.747 52.381 0.00 0.00 0.00 3.16
433 447 4.961438 ATGAGCCACCTGTTCAATTTTT 57.039 36.364 0.00 0.00 0.00 1.94
491 505 1.064463 CCAGCATACACCCCTGACAAT 60.064 52.381 0.00 0.00 0.00 2.71
540 554 2.300437 GCACAAGTCTACTTCCACCTCT 59.700 50.000 0.00 0.00 33.11 3.69
623 637 2.634639 TTGCCCCTCTAGGTTAGACA 57.365 50.000 0.00 0.00 0.00 3.41
639 653 7.881775 GGTTAGACAATTGAATAACCTCCAT 57.118 36.000 29.34 3.72 42.49 3.41
664 678 6.542005 TGAGCACAATGTCAATATAAACGGAT 59.458 34.615 0.00 0.00 0.00 4.18
665 679 7.713073 TGAGCACAATGTCAATATAAACGGATA 59.287 33.333 0.00 0.00 0.00 2.59
666 680 8.445275 AGCACAATGTCAATATAAACGGATAA 57.555 30.769 0.00 0.00 0.00 1.75
667 681 8.898761 AGCACAATGTCAATATAAACGGATAAA 58.101 29.630 0.00 0.00 0.00 1.40
668 682 8.953990 GCACAATGTCAATATAAACGGATAAAC 58.046 33.333 0.00 0.00 0.00 2.01
691 705 3.097461 TTTTTGCGAGGGAAACGGA 57.903 47.368 0.00 0.00 0.00 4.69
814 828 2.223876 CCGGCATCATGAAATTCAAGGG 60.224 50.000 0.00 0.00 0.00 3.95
818 832 4.502604 GGCATCATGAAATTCAAGGGATGG 60.503 45.833 23.90 13.60 35.70 3.51
925 943 3.075148 GACAGTAAAAGGTGAGAAGGCC 58.925 50.000 0.00 0.00 0.00 5.19
926 944 2.711547 ACAGTAAAAGGTGAGAAGGCCT 59.288 45.455 0.00 0.00 36.51 5.19
1246 1264 6.819146 TCCTATCTAGTACTGATAGCACATCG 59.181 42.308 23.34 15.07 41.00 3.84
1262 1280 2.097629 ACATCGGTGTAGACGAGATGTG 59.902 50.000 22.73 8.29 43.52 3.21
1427 1447 7.608308 AGAAATTCTCTCTCTGCAATTACAC 57.392 36.000 0.00 0.00 0.00 2.90
1467 1493 7.940137 ACTAGTTAGATCAGTACCATGGTCTAG 59.060 40.741 23.76 21.44 42.39 2.43
1581 1607 3.088532 CTGAGGAGCAGTTGAGAGTAGT 58.911 50.000 0.00 0.00 39.85 2.73
1590 1616 7.228314 AGCAGTTGAGAGTAGTGTATACAAA 57.772 36.000 7.25 0.00 0.00 2.83
1670 1696 7.122055 TGTTAGGCATTAAAACCTGAACTATGG 59.878 37.037 9.37 0.00 36.77 2.74
1676 1702 6.509418 TTAAAACCTGAACTATGGCATGTC 57.491 37.500 10.98 5.51 0.00 3.06
1759 1786 1.448540 CTAGCCAGGGTTGCTGACG 60.449 63.158 0.00 0.00 39.91 4.35
1762 1789 2.046892 CCAGGGTTGCTGACGAGG 60.047 66.667 0.00 0.00 0.00 4.63
1941 1968 8.483307 AAATTACCAAGAGCTTAATTTGCATG 57.517 30.769 10.77 0.00 35.21 4.06
2007 2034 8.188531 AGTTTTTGTGTCAATGTCATTTCTTG 57.811 30.769 0.00 0.00 0.00 3.02
2008 2035 7.818930 AGTTTTTGTGTCAATGTCATTTCTTGT 59.181 29.630 0.00 0.00 0.00 3.16
2015 2043 9.462174 GTGTCAATGTCATTTCTTGTTTCATAA 57.538 29.630 0.00 0.00 0.00 1.90
2083 2111 5.600484 ACACATTTTGGGTCAAAGTTCCATA 59.400 36.000 0.00 0.00 34.72 2.74
2573 2602 1.338674 TGGCTACAGTGTGCACATACC 60.339 52.381 24.69 17.32 0.00 2.73
2742 2772 3.454371 AAATACTCCCTCCGATTCGTG 57.546 47.619 5.20 0.00 0.00 4.35
2761 2791 4.039488 TCGTGTTACTTGTCACCCACTTAT 59.961 41.667 0.00 0.00 0.00 1.73
2768 2798 4.753107 ACTTGTCACCCACTTATTACAACG 59.247 41.667 0.00 0.00 0.00 4.10
2775 2805 7.761249 GTCACCCACTTATTACAACGTTAGTAT 59.239 37.037 0.00 0.00 0.00 2.12
2841 2871 6.996879 GGAGTATTAAATTCTAAGGTGACCCC 59.003 42.308 0.00 0.00 0.00 4.95
3008 3038 9.998106 GTGAAGTTATCCATAGTATGTTATGGT 57.002 33.333 9.28 7.13 46.69 3.55
3291 3321 4.371786 AGCATATTACGTCCACATGACTG 58.628 43.478 0.00 0.00 42.13 3.51
3470 3510 4.068599 GCTGGATTCTAATTAGCCTCACC 58.931 47.826 7.67 7.19 0.00 4.02
3484 3524 5.441718 AGCCTCACCAAATTTCTCTATCA 57.558 39.130 0.00 0.00 0.00 2.15
3515 3555 4.020573 TCCGACAACACAATGACCTTCTAT 60.021 41.667 0.00 0.00 0.00 1.98
3521 3561 4.265073 ACACAATGACCTTCTATGCCTTC 58.735 43.478 0.00 0.00 0.00 3.46
3687 3727 7.549488 AGAATGGTGCTTGTAAGATTACTGTAC 59.451 37.037 4.50 6.63 34.77 2.90
3777 3817 6.403636 GCCTTGTACATACCAGTCAAGAAATG 60.404 42.308 0.00 0.00 38.06 2.32
3799 3839 9.887629 AAATGGAGATGTATCTATCACATGATC 57.112 33.333 0.00 0.00 36.76 2.92
3810 3850 3.375782 TCACATGATCATAGACTGGCG 57.624 47.619 8.15 0.00 0.00 5.69
3951 3991 3.796717 TGCGCTACGTTTTCTGATATCAG 59.203 43.478 24.32 24.32 45.08 2.90
4064 4104 6.060136 TCTTCCTATGCTTTCATGGAAGATG 58.940 40.000 18.45 3.69 46.82 2.90
4173 4213 0.247736 GGTCGTGAGCAATCCTGTCT 59.752 55.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 7.867909 CCGCTAGACATGTTCATAAGAGAAATA 59.132 37.037 0.00 0.00 0.00 1.40
63 64 2.034432 GGAACTAACTAGGCCGCTAGAC 59.966 54.545 6.05 2.84 0.00 2.59
64 65 2.091994 AGGAACTAACTAGGCCGCTAGA 60.092 50.000 6.05 0.00 36.02 2.43
70 71 4.900054 TTCCTGATAGGAACTAACTAGGCC 59.100 45.833 6.21 0.00 46.88 5.19
101 102 1.497716 TCCCTATAGCCTCGACTTCCA 59.502 52.381 0.00 0.00 0.00 3.53
132 133 5.139727 CACCATCTCTCTATTCACCTCTCT 58.860 45.833 0.00 0.00 0.00 3.10
194 195 5.429762 TCTCTCCAAATCTCTCTCTCTCTCT 59.570 44.000 0.00 0.00 0.00 3.10
285 299 3.512680 CAGCTCTTTCACTAACCCTACG 58.487 50.000 0.00 0.00 0.00 3.51
304 318 3.190738 TTTGCCGTCACCCCTCCAG 62.191 63.158 0.00 0.00 0.00 3.86
315 329 1.338294 TGGTCATCGTATGTTTGCCGT 60.338 47.619 0.00 0.00 0.00 5.68
316 330 1.364721 TGGTCATCGTATGTTTGCCG 58.635 50.000 0.00 0.00 0.00 5.69
363 377 2.236146 TCTCGAGCCAGATTTTAGCCAA 59.764 45.455 7.81 0.00 0.00 4.52
373 387 3.893326 TTGATTCAATCTCGAGCCAGA 57.107 42.857 7.81 1.81 0.00 3.86
399 413 2.802816 GTGGCTCATATTCGGCTTGTAG 59.197 50.000 0.00 0.00 0.00 2.74
434 448 5.929415 GGATTGGAGTTTATTTCCGCAAAAA 59.071 36.000 0.00 0.00 37.54 1.94
443 457 9.719355 GTTGGTTTAATGGATTGGAGTTTATTT 57.281 29.630 0.00 0.00 0.00 1.40
491 505 5.324409 AGGACCTACTTGCAATTTCATTCA 58.676 37.500 0.00 0.00 0.00 2.57
566 580 7.122353 ACAATCTAGACTAAACTCGGCTTAGAA 59.878 37.037 0.00 0.00 31.91 2.10
623 637 5.263599 TGTGCTCATGGAGGTTATTCAATT 58.736 37.500 0.00 0.00 0.00 2.32
639 653 5.877564 TCCGTTTATATTGACATTGTGCTCA 59.122 36.000 0.00 0.00 0.00 4.26
673 687 1.611519 ATCCGTTTCCCTCGCAAAAA 58.388 45.000 0.00 0.00 0.00 1.94
674 688 2.476126 TATCCGTTTCCCTCGCAAAA 57.524 45.000 0.00 0.00 0.00 2.44
675 689 2.476126 TTATCCGTTTCCCTCGCAAA 57.524 45.000 0.00 0.00 0.00 3.68
676 690 2.078392 GTTTATCCGTTTCCCTCGCAA 58.922 47.619 0.00 0.00 0.00 4.85
677 691 1.276989 AGTTTATCCGTTTCCCTCGCA 59.723 47.619 0.00 0.00 0.00 5.10
678 692 2.019948 AGTTTATCCGTTTCCCTCGC 57.980 50.000 0.00 0.00 0.00 5.03
679 693 5.583457 ACAATTAGTTTATCCGTTTCCCTCG 59.417 40.000 0.00 0.00 0.00 4.63
680 694 6.373495 ACACAATTAGTTTATCCGTTTCCCTC 59.627 38.462 0.00 0.00 0.00 4.30
681 695 6.243148 ACACAATTAGTTTATCCGTTTCCCT 58.757 36.000 0.00 0.00 0.00 4.20
682 696 6.505044 ACACAATTAGTTTATCCGTTTCCC 57.495 37.500 0.00 0.00 0.00 3.97
683 697 8.483307 TCTACACAATTAGTTTATCCGTTTCC 57.517 34.615 0.00 0.00 0.00 3.13
684 698 8.601476 CCTCTACACAATTAGTTTATCCGTTTC 58.399 37.037 0.00 0.00 0.00 2.78
685 699 8.316214 TCCTCTACACAATTAGTTTATCCGTTT 58.684 33.333 0.00 0.00 0.00 3.60
686 700 7.844009 TCCTCTACACAATTAGTTTATCCGTT 58.156 34.615 0.00 0.00 0.00 4.44
687 701 7.414222 TCCTCTACACAATTAGTTTATCCGT 57.586 36.000 0.00 0.00 0.00 4.69
688 702 8.888579 ATTCCTCTACACAATTAGTTTATCCG 57.111 34.615 0.00 0.00 0.00 4.18
758 772 8.877808 GGACAATGATCATTTTCCTATTTTCC 57.122 34.615 32.71 15.38 41.89 3.13
786 800 4.669206 ATTTCATGATGCCGGCAAATAA 57.331 36.364 36.33 20.78 0.00 1.40
814 828 6.884280 TCTTTTCTCTCCAAAAGAACCATC 57.116 37.500 6.01 0.00 45.32 3.51
884 898 5.745227 TGTCTCTTTCAGGTTTTTCTCTGT 58.255 37.500 0.00 0.00 33.13 3.41
889 903 7.915923 CCTTTTACTGTCTCTTTCAGGTTTTTC 59.084 37.037 0.00 0.00 37.25 2.29
925 943 3.612479 GCCTGTATTTTTGTGTGGCTCAG 60.612 47.826 0.00 0.00 36.32 3.35
926 944 2.295909 GCCTGTATTTTTGTGTGGCTCA 59.704 45.455 0.00 0.00 36.32 4.26
1067 1085 1.723542 GAGTGTGATGCGTTCTGACAG 59.276 52.381 0.00 0.00 0.00 3.51
1068 1086 1.605457 GGAGTGTGATGCGTTCTGACA 60.605 52.381 0.00 0.00 0.00 3.58
1218 1236 6.715718 TGTGCTATCAGTACTAGATAGGAACC 59.284 42.308 26.41 19.23 44.44 3.62
1246 1264 2.656560 AAGCACATCTCGTCTACACC 57.343 50.000 0.00 0.00 0.00 4.16
1262 1280 1.943340 GCACTCCATACAGCCTAAAGC 59.057 52.381 0.00 0.00 44.25 3.51
1361 1381 4.121317 CTGAGGCAGCAAAACATTTTTCA 58.879 39.130 0.00 0.00 0.00 2.69
1427 1447 8.026026 TGATCTAACTAGTACTAGTCGTATCGG 58.974 40.741 30.81 16.98 44.96 4.18
1506 1532 1.918262 TCTGGGATTGGATCTGCAACT 59.082 47.619 0.00 0.00 0.00 3.16
1581 1607 5.277779 GCTGTTGCTTGTGTCTTTGTATACA 60.278 40.000 0.08 0.08 36.03 2.29
1661 1687 6.049149 GCTACTAAAGACATGCCATAGTTCA 58.951 40.000 3.53 0.00 0.00 3.18
1662 1688 6.201806 CAGCTACTAAAGACATGCCATAGTTC 59.798 42.308 3.53 0.00 0.00 3.01
1670 1696 4.806247 CAGTACCAGCTACTAAAGACATGC 59.194 45.833 0.00 0.00 33.53 4.06
1676 1702 6.127703 TGCTACTTCAGTACCAGCTACTAAAG 60.128 42.308 0.00 0.00 36.91 1.85
1941 1968 6.644592 GGAATGCAGAGTACTCTTATGACATC 59.355 42.308 23.01 13.57 37.98 3.06
2007 2034 7.090808 CCCAGCCTTTTTAAGTCTTATGAAAC 58.909 38.462 0.00 0.00 0.00 2.78
2008 2035 6.780522 ACCCAGCCTTTTTAAGTCTTATGAAA 59.219 34.615 0.00 0.00 0.00 2.69
2015 2043 3.117284 TGGAACCCAGCCTTTTTAAGTCT 60.117 43.478 0.00 0.00 0.00 3.24
2022 2050 2.111792 AGGTAATGGAACCCAGCCTTTT 59.888 45.455 0.00 0.00 40.71 2.27
2126 2154 2.540383 ACTCCATAGTCAGGTTCTGCA 58.460 47.619 0.00 0.00 0.00 4.41
2573 2602 3.486383 TGGTGGCAAGTAGAGGAAAAAG 58.514 45.455 0.00 0.00 0.00 2.27
2740 2770 6.707161 TGTAATAAGTGGGTGACAAGTAACAC 59.293 38.462 0.00 0.00 36.44 3.32
2742 2772 7.569957 CGTTGTAATAAGTGGGTGACAAGTAAC 60.570 40.741 0.00 0.00 0.00 2.50
2775 2805 7.654520 ACTTGTCGCTCACTTAATACAACTTTA 59.345 33.333 0.00 0.00 0.00 1.85
2841 2871 2.652941 CCAATCCATGGGTTTTCGTG 57.347 50.000 7.78 0.00 46.27 4.35
3004 3034 6.440328 ACAAATTTAGGCAGAACCATAACCAT 59.560 34.615 0.00 0.00 43.14 3.55
3005 3035 5.777732 ACAAATTTAGGCAGAACCATAACCA 59.222 36.000 0.00 0.00 43.14 3.67
3006 3036 6.280855 ACAAATTTAGGCAGAACCATAACC 57.719 37.500 0.00 0.00 43.14 2.85
3007 3037 8.520351 AGTTACAAATTTAGGCAGAACCATAAC 58.480 33.333 0.00 0.00 43.14 1.89
3008 3038 8.519526 CAGTTACAAATTTAGGCAGAACCATAA 58.480 33.333 0.00 0.00 43.14 1.90
3009 3039 7.668052 ACAGTTACAAATTTAGGCAGAACCATA 59.332 33.333 0.00 0.00 43.14 2.74
3291 3321 1.212935 AGATGGGAATGTGGGTGCTAC 59.787 52.381 0.00 0.00 0.00 3.58
3379 3409 6.624352 GTCATAGTAGGTGACGTGGTAATA 57.376 41.667 0.00 0.00 36.92 0.98
3445 3485 5.767168 GTGAGGCTAATTAGAATCCAGCATT 59.233 40.000 16.85 0.00 33.86 3.56
3470 3510 7.227314 TCGGACAATGGATGATAGAGAAATTTG 59.773 37.037 0.00 0.00 0.00 2.32
3484 3524 2.559698 TGTGTTGTCGGACAATGGAT 57.440 45.000 24.81 0.00 40.59 3.41
3515 3555 1.672030 CTGCATCACGGTGAAGGCA 60.672 57.895 27.80 27.80 38.06 4.75
3521 3561 1.012086 CTGATTCCTGCATCACGGTG 58.988 55.000 0.56 0.56 0.00 4.94
3571 3611 0.673644 CCGGGTCTCGTGCAAAGATT 60.674 55.000 0.00 0.00 37.11 2.40
3687 3727 2.344535 CCTGCAACAAGGTCTTGGG 58.655 57.895 14.29 7.69 44.45 4.12
3799 3839 4.882671 ACATTTTAAGCGCCAGTCTATG 57.117 40.909 2.29 4.07 0.00 2.23
3810 3850 6.873605 AGACCAAATTGGCTAACATTTTAAGC 59.126 34.615 12.67 0.00 42.67 3.09
3858 3898 5.360429 TCATTTGTCCATACCCATGTCATTG 59.640 40.000 0.00 0.00 0.00 2.82
3916 3956 3.181490 ACGTAGCGCATTCAAGTCTGATA 60.181 43.478 11.47 0.00 0.00 2.15
3923 3963 3.120683 TCAGAAAACGTAGCGCATTCAAG 60.121 43.478 11.47 0.00 30.74 3.02
3951 3991 6.578023 AGAGATATTTAGAAGGCACTGACAC 58.422 40.000 0.00 0.00 40.86 3.67
3992 4032 6.509523 TCGGATGGGAATAGGACTATTTTT 57.490 37.500 6.08 0.00 36.02 1.94
4005 4045 2.238646 ACATACAGCTTTCGGATGGGAA 59.761 45.455 0.25 0.00 35.35 3.97
4064 4104 6.256757 GGCTTCTGTAATGTGATGAACTACTC 59.743 42.308 0.00 0.00 0.00 2.59
4314 4354 2.108514 CCACAACATGATCGGCGCT 61.109 57.895 7.64 0.00 0.00 5.92
4317 4357 0.392998 ACCTCCACAACATGATCGGC 60.393 55.000 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.