Multiple sequence alignment - TraesCS1A01G121500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G121500 chr1A 100.000 1439 0 0 1505 2943 135183032 135181594 0.000000e+00 2658.0
1 TraesCS1A01G121500 chr1A 100.000 1084 0 0 1 1084 135184536 135183453 0.000000e+00 2002.0
2 TraesCS1A01G121500 chr1A 98.403 313 4 1 2631 2942 175999259 175998947 1.540000e-152 549.0
3 TraesCS1A01G121500 chr1A 85.714 84 12 0 2304 2387 492658922 492659005 4.040000e-14 89.8
4 TraesCS1A01G121500 chr1D 92.374 813 41 11 283 1084 122900433 122899631 0.000000e+00 1138.0
5 TraesCS1A01G121500 chr1D 91.687 806 49 10 1506 2306 122899561 122898769 0.000000e+00 1101.0
6 TraesCS1A01G121500 chr1D 93.502 277 17 1 1 277 122902494 122902219 7.590000e-111 411.0
7 TraesCS1A01G121500 chr1D 95.050 101 4 1 2444 2543 122897073 122896973 1.090000e-34 158.0
8 TraesCS1A01G121500 chr1D 95.238 63 1 1 2392 2454 122898766 122898706 6.710000e-17 99.0
9 TraesCS1A01G121500 chr5A 97.799 318 7 0 2626 2943 663331817 663331500 1.540000e-152 549.0
10 TraesCS1A01G121500 chr5A 98.083 313 6 0 2630 2942 549329127 549328815 1.990000e-151 545.0
11 TraesCS1A01G121500 chr5A 85.593 236 28 4 2074 2307 450227649 450227418 2.930000e-60 243.0
12 TraesCS1A01G121500 chr5A 93.464 153 6 3 2391 2543 450227417 450227269 1.060000e-54 224.0
13 TraesCS1A01G121500 chr5B 98.089 314 5 1 2631 2943 194178346 194178659 1.990000e-151 545.0
14 TraesCS1A01G121500 chr5B 97.771 314 5 2 2632 2943 399792142 399792455 9.280000e-150 540.0
15 TraesCS1A01G121500 chr3B 97.484 318 6 2 2627 2942 369046845 369046528 2.580000e-150 542.0
16 TraesCS1A01G121500 chr3B 86.404 228 31 0 1632 1859 111943143 111943370 1.750000e-62 250.0
17 TraesCS1A01G121500 chr3B 92.857 70 4 1 2233 2302 50158296 50158228 1.870000e-17 100.0
18 TraesCS1A01G121500 chr3B 93.878 49 3 0 1903 1951 23161547 23161595 1.130000e-09 75.0
19 TraesCS1A01G121500 chr2A 97.778 315 5 2 2630 2942 349718283 349717969 2.580000e-150 542.0
20 TraesCS1A01G121500 chr2B 97.476 317 6 2 2627 2942 40294690 40294375 9.280000e-150 540.0
21 TraesCS1A01G121500 chr2B 88.750 80 9 0 2304 2383 422230711 422230632 6.710000e-17 99.0
22 TraesCS1A01G121500 chr1B 97.460 315 6 2 2630 2942 250447947 250448261 1.200000e-148 536.0
23 TraesCS1A01G121500 chr3A 87.288 354 35 8 1954 2302 17565013 17565361 2.130000e-106 396.0
24 TraesCS1A01G121500 chr3A 85.232 237 33 2 1632 1866 78710578 78710814 2.930000e-60 243.0
25 TraesCS1A01G121500 chr3A 94.079 152 6 2 2389 2540 17565364 17565512 8.210000e-56 228.0
26 TraesCS1A01G121500 chr3A 85.714 112 14 2 1737 1847 374446643 374446753 1.850000e-22 117.0
27 TraesCS1A01G121500 chr3A 84.783 92 13 1 2296 2387 20991125 20991035 1.120000e-14 91.6
28 TraesCS1A01G121500 chr3D 86.080 352 39 7 1954 2302 51580039 51580383 1.290000e-98 370.0
29 TraesCS1A01G121500 chr3D 85.965 228 32 0 1632 1859 67351375 67351602 8.150000e-61 244.0
30 TraesCS1A01G121500 chr3D 94.079 152 6 2 2389 2540 51580386 51580534 8.210000e-56 228.0
31 TraesCS1A01G121500 chr3D 85.714 112 14 2 1737 1847 286190170 286190280 1.850000e-22 117.0
32 TraesCS1A01G121500 chr5D 87.059 85 9 2 2304 2387 42955248 42955331 8.680000e-16 95.3
33 TraesCS1A01G121500 chr2D 86.905 84 11 0 2304 2387 631487226 631487309 8.680000e-16 95.3
34 TraesCS1A01G121500 chr4B 87.059 85 8 3 2304 2387 621988829 621988911 3.120000e-15 93.5
35 TraesCS1A01G121500 chr4B 83.673 98 15 1 2304 2401 346926496 346926400 1.120000e-14 91.6
36 TraesCS1A01G121500 chrUn 90.000 70 5 2 2304 2372 1830013 1830081 4.040000e-14 89.8
37 TraesCS1A01G121500 chr7B 84.783 92 10 4 2304 2394 28960793 28960705 4.040000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G121500 chr1A 135181594 135184536 2942 True 2330.0 2658 100.0000 1 2943 2 chr1A.!!$R2 2942
1 TraesCS1A01G121500 chr1D 122896973 122902494 5521 True 581.4 1138 93.5702 1 2543 5 chr1D.!!$R1 2542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 2751 0.038526 AACTGGCGACCAACGAGTAG 60.039 55.0 0.0 0.0 45.77 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 4055 0.109132 GGAGAAAATGCAGGCCGTTG 60.109 55.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.479027 ACCGGGCAAGTTAAATGTATTTTCT 59.521 36.000 6.32 0.00 0.00 2.52
43 44 0.106419 TCTGGTTTGGGTTTTCGGCT 60.106 50.000 0.00 0.00 0.00 5.52
48 49 2.352323 GGTTTGGGTTTTCGGCTATGTG 60.352 50.000 0.00 0.00 0.00 3.21
63 64 2.282180 GTGCCGGGTGTTGTGGAT 60.282 61.111 2.18 0.00 0.00 3.41
71 72 2.168521 CGGGTGTTGTGGATCACTAGAT 59.831 50.000 0.00 0.00 35.11 1.98
72 73 3.369471 CGGGTGTTGTGGATCACTAGATT 60.369 47.826 0.00 0.00 35.11 2.40
73 74 4.589908 GGGTGTTGTGGATCACTAGATTT 58.410 43.478 0.00 0.00 35.11 2.17
74 75 5.010282 GGGTGTTGTGGATCACTAGATTTT 58.990 41.667 0.00 0.00 35.11 1.82
76 77 6.828785 GGGTGTTGTGGATCACTAGATTTTAT 59.171 38.462 0.00 0.00 35.11 1.40
129 130 3.305335 CCTGCTGGCGTTATTCAAACTTT 60.305 43.478 0.00 0.00 0.00 2.66
170 171 5.668471 TGGAAATCATTGACTAGAGAGCAG 58.332 41.667 0.00 0.00 0.00 4.24
181 182 0.540923 AGAGAGCAGGACATGAAGGC 59.459 55.000 0.00 0.00 0.00 4.35
219 220 2.357760 GTGTTAGGGCGTTGGCGA 60.358 61.111 0.00 0.00 41.24 5.54
236 237 1.807742 GCGATCTCTATCTACCGCACT 59.192 52.381 0.00 0.00 41.89 4.40
277 278 1.960689 GGCTTGGTGGCTTTTGTCTTA 59.039 47.619 0.00 0.00 38.32 2.10
278 279 2.029918 GGCTTGGTGGCTTTTGTCTTAG 60.030 50.000 0.00 0.00 38.32 2.18
279 280 2.608016 GCTTGGTGGCTTTTGTCTTAGC 60.608 50.000 0.00 0.00 36.66 3.09
280 281 1.234821 TGGTGGCTTTTGTCTTAGCG 58.765 50.000 0.00 0.00 38.28 4.26
281 282 0.521735 GGTGGCTTTTGTCTTAGCGG 59.478 55.000 0.00 0.00 38.28 5.52
307 2088 2.238646 CAGGGGCCTGTGTGTCTATTTA 59.761 50.000 0.84 0.00 39.10 1.40
311 2092 3.689649 GGGCCTGTGTGTCTATTTACTTG 59.310 47.826 0.84 0.00 0.00 3.16
366 2147 5.715434 TGTCTGTTTATTTGTTTAGGGGC 57.285 39.130 0.00 0.00 0.00 5.80
389 2170 6.361481 GGCGTTGAATTGTTAAGGTTAACTTC 59.639 38.462 12.61 9.68 42.61 3.01
390 2171 6.913673 GCGTTGAATTGTTAAGGTTAACTTCA 59.086 34.615 12.61 11.61 42.61 3.02
404 2185 6.434340 AGGTTAACTTCATGAATCTTGGTTCC 59.566 38.462 8.96 7.65 0.00 3.62
407 2188 9.010029 GTTAACTTCATGAATCTTGGTTCCTTA 57.990 33.333 8.96 0.00 0.00 2.69
410 2191 6.540189 ACTTCATGAATCTTGGTTCCTTATCG 59.460 38.462 8.96 0.00 0.00 2.92
425 2206 5.365619 TCCTTATCGGTTGGCTTTATCTTC 58.634 41.667 0.00 0.00 0.00 2.87
428 2209 6.318900 CCTTATCGGTTGGCTTTATCTTCTTT 59.681 38.462 0.00 0.00 0.00 2.52
499 2280 7.669089 AATGTTTAGAGGAGGAAAAACCAAA 57.331 32.000 0.00 0.00 42.04 3.28
502 2283 8.084985 TGTTTAGAGGAGGAAAAACCAAATTT 57.915 30.769 0.00 0.00 42.04 1.82
503 2284 9.203163 TGTTTAGAGGAGGAAAAACCAAATTTA 57.797 29.630 0.00 0.00 42.04 1.40
508 2289 9.159254 AGAGGAGGAAAAACCAAATTTATTCTT 57.841 29.630 0.00 0.00 42.04 2.52
509 2290 9.424319 GAGGAGGAAAAACCAAATTTATTCTTC 57.576 33.333 0.00 0.00 42.04 2.87
531 2312 6.114221 TCTTTAACGCATTTTAGGGAATCG 57.886 37.500 0.00 0.00 0.00 3.34
536 2317 2.480419 CGCATTTTAGGGAATCGGCTAG 59.520 50.000 0.00 0.00 0.00 3.42
547 2328 7.496346 AGGGAATCGGCTAGAAATGATATAA 57.504 36.000 0.00 0.00 0.00 0.98
553 2334 5.546499 TCGGCTAGAAATGATATAAGGGGTT 59.454 40.000 0.00 0.00 0.00 4.11
572 2353 2.892215 GTTATAGGACGAGAGAAGGGGG 59.108 54.545 0.00 0.00 0.00 5.40
577 2358 1.268066 GACGAGAGAAGGGGGAAAGT 58.732 55.000 0.00 0.00 0.00 2.66
581 2362 2.547990 GAGAGAAGGGGGAAAGTGGTA 58.452 52.381 0.00 0.00 0.00 3.25
582 2363 2.910977 GAGAGAAGGGGGAAAGTGGTAA 59.089 50.000 0.00 0.00 0.00 2.85
601 2382 4.329801 GGTAAAATAGCATTTGCACAAGCC 59.670 41.667 5.20 0.00 45.16 4.35
618 2399 0.039256 GCCATCACAAGCGCTGAAAA 60.039 50.000 12.58 0.00 0.00 2.29
632 2413 3.303725 CGCTGAAAATGACCGAAAGAACA 60.304 43.478 0.00 0.00 0.00 3.18
648 2429 1.126846 GAACACTGAACCGCGAATCAG 59.873 52.381 28.19 28.19 46.69 2.90
651 2432 2.373938 CTGAACCGCGAATCAGTCC 58.626 57.895 24.25 0.00 38.57 3.85
711 2499 2.815478 ACGCTCAAGCTGCTATTAGAC 58.185 47.619 0.90 0.00 39.32 2.59
855 2643 1.547372 CAGCTTTGGGAAACATCCTGG 59.453 52.381 0.00 0.00 0.00 4.45
919 2707 6.258160 AGCTTGCACGACACAATATTTATTC 58.742 36.000 0.00 0.00 0.00 1.75
947 2735 3.077484 AGCCAATCTACACATGCAACT 57.923 42.857 0.00 0.00 0.00 3.16
963 2751 0.038526 AACTGGCGACCAACGAGTAG 60.039 55.000 0.00 0.00 45.77 2.57
965 2753 0.038526 CTGGCGACCAACGAGTAGTT 60.039 55.000 0.00 0.00 45.77 2.24
966 2754 1.200716 CTGGCGACCAACGAGTAGTTA 59.799 52.381 0.00 0.00 45.77 2.24
967 2755 1.200716 TGGCGACCAACGAGTAGTTAG 59.799 52.381 0.00 0.00 45.77 2.34
968 2756 1.266466 GCGACCAACGAGTAGTTAGC 58.734 55.000 0.00 0.00 45.77 3.09
981 2769 5.122869 CGAGTAGTTAGCTAGTGGTGTAACA 59.877 44.000 0.00 0.00 32.32 2.41
982 2770 6.348786 CGAGTAGTTAGCTAGTGGTGTAACAA 60.349 42.308 0.00 0.00 32.32 2.83
983 2771 6.921914 AGTAGTTAGCTAGTGGTGTAACAAG 58.078 40.000 0.00 0.00 39.98 3.16
984 2772 5.803237 AGTTAGCTAGTGGTGTAACAAGT 57.197 39.130 0.00 0.00 39.98 3.16
1049 2838 1.480789 TGTGTATTCAGCTCCGCCTA 58.519 50.000 0.00 0.00 0.00 3.93
1062 2851 2.553727 CGCCTACGCCTACTCCTCC 61.554 68.421 0.00 0.00 0.00 4.30
1073 2862 0.620700 TACTCCTCCCCTTTCCTGGC 60.621 60.000 0.00 0.00 0.00 4.85
1078 2867 1.926426 CTCCCCTTTCCTGGCCGATT 61.926 60.000 0.00 0.00 0.00 3.34
1525 3314 0.036010 AGCACCACCCTTTCGATCAG 60.036 55.000 0.00 0.00 0.00 2.90
1564 3353 2.105128 CCGACGGCACAGATCTCC 59.895 66.667 0.00 0.00 0.00 3.71
1573 3362 1.379977 ACAGATCTCCTTCGCCGGA 60.380 57.895 5.05 0.00 0.00 5.14
1605 3394 1.076533 GAACATCGCGGCGAGAAGAA 61.077 55.000 29.64 6.43 39.91 2.52
1612 3401 0.926846 GCGGCGAGAAGAAGATCAAG 59.073 55.000 12.98 0.00 0.00 3.02
1631 3420 1.954362 GATCAGTGCGAGGGTGAGCT 61.954 60.000 0.00 0.00 0.00 4.09
1829 3618 0.095935 CTACGTCGTCACCACCTACG 59.904 60.000 0.00 0.00 40.40 3.51
1971 3760 1.834263 AGCTAATTCCGTTCTGCTCCT 59.166 47.619 0.00 0.00 0.00 3.69
2045 3834 0.163788 GTCGTCGTCGGTTCGAGTTA 59.836 55.000 1.55 0.00 40.52 2.24
2048 3837 2.095768 TCGTCGTCGGTTCGAGTTATTT 60.096 45.455 1.55 0.00 40.52 1.40
2055 3844 7.166473 GTCGTCGGTTCGAGTTATTTTATACAT 59.834 37.037 0.00 0.00 40.52 2.29
2135 3924 7.552687 AGTCCAAAATTATCAAGCACGAATAGA 59.447 33.333 0.00 0.00 0.00 1.98
2136 3925 7.852945 GTCCAAAATTATCAAGCACGAATAGAG 59.147 37.037 0.00 0.00 0.00 2.43
2184 3973 2.497273 ACTTCTGGTTTGCTTGCTTGTT 59.503 40.909 0.00 0.00 0.00 2.83
2193 3982 5.580691 GGTTTGCTTGCTTGTTAAGTTTCTT 59.419 36.000 0.00 0.00 0.00 2.52
2194 3983 6.754675 GGTTTGCTTGCTTGTTAAGTTTCTTA 59.245 34.615 0.00 0.00 0.00 2.10
2196 3985 8.480066 GTTTGCTTGCTTGTTAAGTTTCTTATC 58.520 33.333 0.00 0.00 0.00 1.75
2197 3986 7.270757 TGCTTGCTTGTTAAGTTTCTTATCA 57.729 32.000 0.00 0.00 0.00 2.15
2198 3987 7.138736 TGCTTGCTTGTTAAGTTTCTTATCAC 58.861 34.615 0.00 0.00 0.00 3.06
2199 3988 6.582672 GCTTGCTTGTTAAGTTTCTTATCACC 59.417 38.462 0.00 0.00 0.00 4.02
2200 3989 6.569179 TGCTTGTTAAGTTTCTTATCACCC 57.431 37.500 0.00 0.00 0.00 4.61
2201 3990 6.065374 TGCTTGTTAAGTTTCTTATCACCCA 58.935 36.000 0.00 0.00 0.00 4.51
2202 3991 6.016610 TGCTTGTTAAGTTTCTTATCACCCAC 60.017 38.462 0.00 0.00 0.00 4.61
2205 3994 5.163077 TGTTAAGTTTCTTATCACCCACCCA 60.163 40.000 0.00 0.00 0.00 4.51
2206 3995 3.434940 AGTTTCTTATCACCCACCCAC 57.565 47.619 0.00 0.00 0.00 4.61
2207 3996 2.041216 AGTTTCTTATCACCCACCCACC 59.959 50.000 0.00 0.00 0.00 4.61
2208 3997 0.996583 TTCTTATCACCCACCCACCC 59.003 55.000 0.00 0.00 0.00 4.61
2210 3999 0.034477 CTTATCACCCACCCACCCAC 60.034 60.000 0.00 0.00 0.00 4.61
2211 4000 0.772517 TTATCACCCACCCACCCACA 60.773 55.000 0.00 0.00 0.00 4.17
2212 4001 1.493854 TATCACCCACCCACCCACAC 61.494 60.000 0.00 0.00 0.00 3.82
2214 4003 3.816090 ACCCACCCACCCACACAC 61.816 66.667 0.00 0.00 0.00 3.82
2216 4005 2.518349 CCACCCACCCACACACAC 60.518 66.667 0.00 0.00 0.00 3.82
2219 4008 0.967887 CACCCACCCACACACACAAA 60.968 55.000 0.00 0.00 0.00 2.83
2220 4009 0.251832 ACCCACCCACACACACAAAA 60.252 50.000 0.00 0.00 0.00 2.44
2221 4010 0.459489 CCCACCCACACACACAAAAG 59.541 55.000 0.00 0.00 0.00 2.27
2222 4011 1.468985 CCACCCACACACACAAAAGA 58.531 50.000 0.00 0.00 0.00 2.52
2223 4012 1.821753 CCACCCACACACACAAAAGAA 59.178 47.619 0.00 0.00 0.00 2.52
2224 4013 2.232452 CCACCCACACACACAAAAGAAA 59.768 45.455 0.00 0.00 0.00 2.52
2225 4014 3.306364 CCACCCACACACACAAAAGAAAA 60.306 43.478 0.00 0.00 0.00 2.29
2226 4015 4.310769 CACCCACACACACAAAAGAAAAA 58.689 39.130 0.00 0.00 0.00 1.94
2227 4016 4.151512 CACCCACACACACAAAAGAAAAAC 59.848 41.667 0.00 0.00 0.00 2.43
2228 4017 3.366422 CCCACACACACAAAAGAAAAACG 59.634 43.478 0.00 0.00 0.00 3.60
2229 4018 3.984633 CCACACACACAAAAGAAAAACGT 59.015 39.130 0.00 0.00 0.00 3.99
2230 4019 4.446051 CCACACACACAAAAGAAAAACGTT 59.554 37.500 0.00 0.00 0.00 3.99
2232 4021 6.062021 CACACACACAAAAGAAAAACGTTTC 58.938 36.000 15.01 2.55 43.05 2.78
2266 4055 5.796350 TTAGGCGCTTCTTGACTTAATTC 57.204 39.130 7.64 0.00 0.00 2.17
2277 4066 1.810151 GACTTAATTCAACGGCCTGCA 59.190 47.619 0.00 0.00 0.00 4.41
2306 4095 5.180271 TCCATCAGTCAAATAAACGGGTAC 58.820 41.667 0.00 0.00 0.00 3.34
2307 4096 5.046159 TCCATCAGTCAAATAAACGGGTACT 60.046 40.000 0.00 0.00 0.00 2.73
2308 4097 5.293569 CCATCAGTCAAATAAACGGGTACTC 59.706 44.000 0.00 0.00 0.00 2.59
2309 4098 4.824289 TCAGTCAAATAAACGGGTACTCC 58.176 43.478 0.00 0.00 0.00 3.85
2328 4117 8.975295 GGTACTCCCTCTGTAAACTTTTATAGA 58.025 37.037 7.66 7.66 38.17 1.98
2332 4121 9.250624 CTCCCTCTGTAAACTTTTATAGAATCG 57.749 37.037 8.86 0.35 39.38 3.34
2333 4122 8.755977 TCCCTCTGTAAACTTTTATAGAATCGT 58.244 33.333 8.86 0.00 39.38 3.73
2334 4123 9.379791 CCCTCTGTAAACTTTTATAGAATCGTT 57.620 33.333 8.86 0.00 39.38 3.85
2507 5938 7.948513 CTTGTCAACAAGTGTGTACTTTAAC 57.051 36.000 13.54 0.00 44.57 2.01
2508 5939 7.436430 TTGTCAACAAGTGTGTACTTTAACA 57.564 32.000 0.00 0.00 44.57 2.41
2509 5940 7.618502 TGTCAACAAGTGTGTACTTTAACAT 57.381 32.000 0.00 0.00 44.57 2.71
2510 5941 8.719560 TGTCAACAAGTGTGTACTTTAACATA 57.280 30.769 0.00 0.00 44.57 2.29
2511 5942 8.605746 TGTCAACAAGTGTGTACTTTAACATAC 58.394 33.333 0.00 0.00 44.57 2.39
2512 5943 8.605746 GTCAACAAGTGTGTACTTTAACATACA 58.394 33.333 6.64 0.00 44.57 2.29
2513 5944 9.163899 TCAACAAGTGTGTACTTTAACATACAA 57.836 29.630 6.64 0.00 44.57 2.41
2514 5945 9.433317 CAACAAGTGTGTACTTTAACATACAAG 57.567 33.333 6.64 1.83 44.57 3.16
2515 5946 8.726870 ACAAGTGTGTACTTTAACATACAAGT 57.273 30.769 6.64 2.34 44.57 3.16
2516 5947 9.169592 ACAAGTGTGTACTTTAACATACAAGTT 57.830 29.630 6.64 0.00 44.57 2.66
2517 5948 9.997482 CAAGTGTGTACTTTAACATACAAGTTT 57.003 29.630 6.64 0.00 44.57 2.66
2585 6016 2.047750 GCGGCTAGCCTGGATAGC 60.048 66.667 30.69 30.69 45.40 2.97
2590 6021 2.453983 GCTAGCCTGGATAGCAAGAG 57.546 55.000 32.72 5.96 45.44 2.85
2591 6022 1.607767 GCTAGCCTGGATAGCAAGAGC 60.608 57.143 32.72 12.32 45.44 4.09
2592 6023 1.690893 CTAGCCTGGATAGCAAGAGCA 59.309 52.381 5.98 0.00 45.49 4.26
2593 6024 1.138568 AGCCTGGATAGCAAGAGCAT 58.861 50.000 0.00 0.00 45.49 3.79
2594 6025 2.333069 AGCCTGGATAGCAAGAGCATA 58.667 47.619 0.00 0.00 45.49 3.14
2595 6026 2.038295 AGCCTGGATAGCAAGAGCATAC 59.962 50.000 0.00 0.00 45.49 2.39
2596 6027 2.038295 GCCTGGATAGCAAGAGCATACT 59.962 50.000 0.00 0.00 45.49 2.12
2597 6028 3.661944 CCTGGATAGCAAGAGCATACTG 58.338 50.000 0.00 0.00 45.49 2.74
2598 6029 3.323115 CCTGGATAGCAAGAGCATACTGA 59.677 47.826 0.00 0.00 45.49 3.41
2599 6030 4.305769 CTGGATAGCAAGAGCATACTGAC 58.694 47.826 0.00 0.00 45.49 3.51
2600 6031 3.706086 TGGATAGCAAGAGCATACTGACA 59.294 43.478 0.00 0.00 45.49 3.58
2601 6032 4.054671 GGATAGCAAGAGCATACTGACAC 58.945 47.826 0.00 0.00 45.49 3.67
2602 6033 4.202202 GGATAGCAAGAGCATACTGACACT 60.202 45.833 0.00 0.00 45.49 3.55
2603 6034 3.244033 AGCAAGAGCATACTGACACTC 57.756 47.619 0.00 0.00 45.49 3.51
2604 6035 1.923204 GCAAGAGCATACTGACACTCG 59.077 52.381 0.00 0.00 41.58 4.18
2605 6036 2.416027 GCAAGAGCATACTGACACTCGA 60.416 50.000 0.00 0.00 41.58 4.04
2606 6037 3.175152 CAAGAGCATACTGACACTCGAC 58.825 50.000 0.00 0.00 34.31 4.20
2607 6038 1.746220 AGAGCATACTGACACTCGACC 59.254 52.381 0.00 0.00 34.31 4.79
2608 6039 0.818296 AGCATACTGACACTCGACCC 59.182 55.000 0.00 0.00 0.00 4.46
2609 6040 0.530744 GCATACTGACACTCGACCCA 59.469 55.000 0.00 0.00 0.00 4.51
2610 6041 1.137086 GCATACTGACACTCGACCCAT 59.863 52.381 0.00 0.00 0.00 4.00
2611 6042 2.814269 CATACTGACACTCGACCCATG 58.186 52.381 0.00 0.00 0.00 3.66
2612 6043 2.209690 TACTGACACTCGACCCATGA 57.790 50.000 0.00 0.00 0.00 3.07
2613 6044 1.338107 ACTGACACTCGACCCATGAA 58.662 50.000 0.00 0.00 0.00 2.57
2614 6045 1.902508 ACTGACACTCGACCCATGAAT 59.097 47.619 0.00 0.00 0.00 2.57
2615 6046 3.096852 ACTGACACTCGACCCATGAATA 58.903 45.455 0.00 0.00 0.00 1.75
2616 6047 3.706594 ACTGACACTCGACCCATGAATAT 59.293 43.478 0.00 0.00 0.00 1.28
2617 6048 4.202161 ACTGACACTCGACCCATGAATATC 60.202 45.833 0.00 0.00 0.00 1.63
2618 6049 3.704061 TGACACTCGACCCATGAATATCA 59.296 43.478 0.00 0.00 0.00 2.15
2619 6050 4.051922 GACACTCGACCCATGAATATCAC 58.948 47.826 0.00 0.00 0.00 3.06
2620 6051 3.706594 ACACTCGACCCATGAATATCACT 59.293 43.478 0.00 0.00 0.00 3.41
2621 6052 4.893524 ACACTCGACCCATGAATATCACTA 59.106 41.667 0.00 0.00 0.00 2.74
2622 6053 5.362717 ACACTCGACCCATGAATATCACTAA 59.637 40.000 0.00 0.00 0.00 2.24
2623 6054 6.127168 ACACTCGACCCATGAATATCACTAAA 60.127 38.462 0.00 0.00 0.00 1.85
2624 6055 6.931281 CACTCGACCCATGAATATCACTAAAT 59.069 38.462 0.00 0.00 0.00 1.40
2625 6056 7.116948 CACTCGACCCATGAATATCACTAAATC 59.883 40.741 0.00 0.00 0.00 2.17
2626 6057 6.156519 TCGACCCATGAATATCACTAAATCG 58.843 40.000 0.00 0.00 0.00 3.34
2627 6058 5.926542 CGACCCATGAATATCACTAAATCGT 59.073 40.000 0.00 0.00 0.00 3.73
2628 6059 6.423905 CGACCCATGAATATCACTAAATCGTT 59.576 38.462 0.00 0.00 0.00 3.85
2629 6060 7.597369 CGACCCATGAATATCACTAAATCGTTA 59.403 37.037 0.00 0.00 0.00 3.18
2630 6061 9.268268 GACCCATGAATATCACTAAATCGTTAA 57.732 33.333 0.00 0.00 0.00 2.01
2631 6062 9.793259 ACCCATGAATATCACTAAATCGTTAAT 57.207 29.630 0.00 0.00 0.00 1.40
2641 6072 8.749026 TCACTAAATCGTTAATCTCTACTCCT 57.251 34.615 0.00 0.00 0.00 3.69
2642 6073 9.842775 TCACTAAATCGTTAATCTCTACTCCTA 57.157 33.333 0.00 0.00 0.00 2.94
2647 6078 8.707796 AATCGTTAATCTCTACTCCTAATGGA 57.292 34.615 0.00 0.00 40.69 3.41
2648 6079 7.507733 TCGTTAATCTCTACTCCTAATGGAC 57.492 40.000 0.00 0.00 37.46 4.02
2649 6080 6.204301 TCGTTAATCTCTACTCCTAATGGACG 59.796 42.308 0.00 0.00 37.46 4.79
2650 6081 6.204301 CGTTAATCTCTACTCCTAATGGACGA 59.796 42.308 0.00 0.00 37.46 4.20
2651 6082 7.255035 CGTTAATCTCTACTCCTAATGGACGAA 60.255 40.741 0.00 0.00 37.46 3.85
2652 6083 8.578151 GTTAATCTCTACTCCTAATGGACGAAT 58.422 37.037 0.00 0.00 37.46 3.34
2653 6084 7.604657 AATCTCTACTCCTAATGGACGAATT 57.395 36.000 0.00 0.00 37.46 2.17
2654 6085 6.392625 TCTCTACTCCTAATGGACGAATTG 57.607 41.667 0.00 0.00 37.46 2.32
2655 6086 5.302059 TCTCTACTCCTAATGGACGAATTGG 59.698 44.000 0.00 0.00 37.46 3.16
2656 6087 4.960469 TCTACTCCTAATGGACGAATTGGT 59.040 41.667 0.00 0.00 37.46 3.67
2657 6088 4.569719 ACTCCTAATGGACGAATTGGTT 57.430 40.909 0.00 0.00 37.46 3.67
2658 6089 4.261801 ACTCCTAATGGACGAATTGGTTG 58.738 43.478 0.00 0.00 37.46 3.77
2659 6090 4.019681 ACTCCTAATGGACGAATTGGTTGA 60.020 41.667 0.00 0.00 37.46 3.18
2660 6091 4.912586 TCCTAATGGACGAATTGGTTGAA 58.087 39.130 0.00 0.00 37.46 2.69
2661 6092 5.505780 TCCTAATGGACGAATTGGTTGAAT 58.494 37.500 0.00 0.00 37.46 2.57
2662 6093 6.654959 TCCTAATGGACGAATTGGTTGAATA 58.345 36.000 0.00 0.00 37.46 1.75
2663 6094 6.765989 TCCTAATGGACGAATTGGTTGAATAG 59.234 38.462 0.00 0.00 37.46 1.73
2664 6095 6.542370 CCTAATGGACGAATTGGTTGAATAGT 59.458 38.462 0.00 0.00 34.57 2.12
2665 6096 6.436843 AATGGACGAATTGGTTGAATAGTC 57.563 37.500 0.00 0.00 33.96 2.59
2666 6097 4.258543 TGGACGAATTGGTTGAATAGTCC 58.741 43.478 0.00 0.00 44.47 3.85
2667 6098 3.626217 GGACGAATTGGTTGAATAGTCCC 59.374 47.826 0.00 0.00 41.56 4.46
2668 6099 3.617284 ACGAATTGGTTGAATAGTCCCC 58.383 45.455 0.00 0.00 0.00 4.81
2669 6100 2.949644 CGAATTGGTTGAATAGTCCCCC 59.050 50.000 0.00 0.00 0.00 5.40
2683 6114 3.816054 CCCCCACTTTCTACCGGT 58.184 61.111 13.98 13.98 0.00 5.28
2684 6115 2.072366 CCCCCACTTTCTACCGGTT 58.928 57.895 15.04 0.00 0.00 4.44
2685 6116 0.402887 CCCCCACTTTCTACCGGTTT 59.597 55.000 15.04 0.00 0.00 3.27
2686 6117 1.629861 CCCCCACTTTCTACCGGTTTA 59.370 52.381 15.04 0.00 0.00 2.01
2687 6118 2.240414 CCCCCACTTTCTACCGGTTTAT 59.760 50.000 15.04 0.00 0.00 1.40
2688 6119 3.308617 CCCCCACTTTCTACCGGTTTATT 60.309 47.826 15.04 0.00 0.00 1.40
2689 6120 4.338012 CCCCACTTTCTACCGGTTTATTT 58.662 43.478 15.04 0.00 0.00 1.40
2690 6121 4.768448 CCCCACTTTCTACCGGTTTATTTT 59.232 41.667 15.04 0.00 0.00 1.82
2691 6122 5.106038 CCCCACTTTCTACCGGTTTATTTTC 60.106 44.000 15.04 0.00 0.00 2.29
2692 6123 5.474189 CCCACTTTCTACCGGTTTATTTTCA 59.526 40.000 15.04 0.00 0.00 2.69
2693 6124 6.016108 CCCACTTTCTACCGGTTTATTTTCAA 60.016 38.462 15.04 0.00 0.00 2.69
2694 6125 6.859508 CCACTTTCTACCGGTTTATTTTCAAC 59.140 38.462 15.04 0.00 0.00 3.18
2695 6126 6.859508 CACTTTCTACCGGTTTATTTTCAACC 59.140 38.462 15.04 0.00 40.46 3.77
2720 6151 3.266477 TTTTCCATCAAATGACCCCCA 57.734 42.857 0.00 0.00 0.00 4.96
2721 6152 2.230130 TTCCATCAAATGACCCCCAC 57.770 50.000 0.00 0.00 0.00 4.61
2722 6153 0.334676 TCCATCAAATGACCCCCACC 59.665 55.000 0.00 0.00 0.00 4.61
2723 6154 0.687427 CCATCAAATGACCCCCACCC 60.687 60.000 0.00 0.00 0.00 4.61
2724 6155 0.687427 CATCAAATGACCCCCACCCC 60.687 60.000 0.00 0.00 0.00 4.95
2725 6156 1.885593 ATCAAATGACCCCCACCCCC 61.886 60.000 0.00 0.00 0.00 5.40
2726 6157 2.455532 AAATGACCCCCACCCCCA 60.456 61.111 0.00 0.00 0.00 4.96
2727 6158 2.863970 AAATGACCCCCACCCCCAC 61.864 63.158 0.00 0.00 0.00 4.61
2742 6173 4.939368 CACGCCCACCCACCGAAA 62.939 66.667 0.00 0.00 0.00 3.46
2743 6174 4.941309 ACGCCCACCCACCGAAAC 62.941 66.667 0.00 0.00 0.00 2.78
2765 6196 4.148825 CCAGCGAACCGGGGAGAG 62.149 72.222 6.32 0.00 0.00 3.20
2766 6197 3.068691 CAGCGAACCGGGGAGAGA 61.069 66.667 6.32 0.00 0.00 3.10
2767 6198 2.042843 AGCGAACCGGGGAGAGAT 60.043 61.111 6.32 0.00 0.00 2.75
2768 6199 2.128507 AGCGAACCGGGGAGAGATC 61.129 63.158 6.32 0.00 0.00 2.75
2769 6200 3.130227 CGAACCGGGGAGAGATCC 58.870 66.667 6.32 0.00 0.00 3.36
2770 6201 2.846652 CGAACCGGGGAGAGATCCG 61.847 68.421 6.32 0.00 45.29 4.18
2771 6202 1.757340 GAACCGGGGAGAGATCCGT 60.757 63.158 6.32 0.00 44.32 4.69
2772 6203 1.305887 AACCGGGGAGAGATCCGTT 60.306 57.895 6.32 0.00 44.32 4.44
2773 6204 1.614241 AACCGGGGAGAGATCCGTTG 61.614 60.000 6.32 0.00 44.32 4.10
2774 6205 1.756950 CCGGGGAGAGATCCGTTGA 60.757 63.158 0.00 0.00 44.32 3.18
2775 6206 1.115930 CCGGGGAGAGATCCGTTGAT 61.116 60.000 0.00 0.00 44.32 2.57
2776 6207 0.753262 CGGGGAGAGATCCGTTGATT 59.247 55.000 0.00 0.00 41.23 2.57
2777 6208 1.139058 CGGGGAGAGATCCGTTGATTT 59.861 52.381 0.00 0.00 41.23 2.17
2778 6209 2.565841 GGGGAGAGATCCGTTGATTTG 58.434 52.381 0.00 0.00 0.00 2.32
2779 6210 2.565841 GGGAGAGATCCGTTGATTTGG 58.434 52.381 0.00 0.00 0.00 3.28
2780 6211 1.943340 GGAGAGATCCGTTGATTTGGC 59.057 52.381 0.00 0.00 0.00 4.52
2781 6212 2.420687 GGAGAGATCCGTTGATTTGGCT 60.421 50.000 0.00 0.00 0.00 4.75
2782 6213 3.181465 GGAGAGATCCGTTGATTTGGCTA 60.181 47.826 0.00 0.00 0.00 3.93
2783 6214 4.442706 GAGAGATCCGTTGATTTGGCTAA 58.557 43.478 0.00 0.00 0.00 3.09
2784 6215 4.446371 AGAGATCCGTTGATTTGGCTAAG 58.554 43.478 0.00 0.00 0.00 2.18
2785 6216 3.545703 AGATCCGTTGATTTGGCTAAGG 58.454 45.455 0.00 0.00 0.00 2.69
2786 6217 2.871096 TCCGTTGATTTGGCTAAGGT 57.129 45.000 0.00 0.00 0.00 3.50
2787 6218 3.985019 TCCGTTGATTTGGCTAAGGTA 57.015 42.857 0.00 0.00 0.00 3.08
2788 6219 3.869065 TCCGTTGATTTGGCTAAGGTAG 58.131 45.455 0.00 0.00 0.00 3.18
2789 6220 2.943033 CCGTTGATTTGGCTAAGGTAGG 59.057 50.000 0.00 0.00 0.00 3.18
2790 6221 3.370103 CCGTTGATTTGGCTAAGGTAGGA 60.370 47.826 0.00 0.00 0.00 2.94
2791 6222 4.258543 CGTTGATTTGGCTAAGGTAGGAA 58.741 43.478 0.00 0.00 0.00 3.36
2792 6223 4.698304 CGTTGATTTGGCTAAGGTAGGAAA 59.302 41.667 0.00 0.00 0.00 3.13
2793 6224 5.163754 CGTTGATTTGGCTAAGGTAGGAAAG 60.164 44.000 0.00 0.00 0.00 2.62
2794 6225 5.772393 TGATTTGGCTAAGGTAGGAAAGA 57.228 39.130 0.00 0.00 0.00 2.52
2795 6226 6.134535 TGATTTGGCTAAGGTAGGAAAGAA 57.865 37.500 0.00 0.00 0.00 2.52
2796 6227 6.731467 TGATTTGGCTAAGGTAGGAAAGAAT 58.269 36.000 0.00 0.00 0.00 2.40
2797 6228 6.828785 TGATTTGGCTAAGGTAGGAAAGAATC 59.171 38.462 0.00 0.00 0.00 2.52
2798 6229 6.388619 TTTGGCTAAGGTAGGAAAGAATCT 57.611 37.500 0.00 0.00 0.00 2.40
2799 6230 7.504926 TTTGGCTAAGGTAGGAAAGAATCTA 57.495 36.000 0.00 0.00 0.00 1.98
2800 6231 7.691993 TTGGCTAAGGTAGGAAAGAATCTAT 57.308 36.000 0.00 0.00 0.00 1.98
2801 6232 7.691993 TGGCTAAGGTAGGAAAGAATCTATT 57.308 36.000 0.00 0.00 0.00 1.73
2802 6233 8.792830 TGGCTAAGGTAGGAAAGAATCTATTA 57.207 34.615 0.00 0.00 0.00 0.98
2803 6234 9.393786 TGGCTAAGGTAGGAAAGAATCTATTAT 57.606 33.333 0.00 0.00 0.00 1.28
2840 6271 7.404139 GCAAATTGCATTAATGGAAGAGATC 57.596 36.000 24.01 10.77 44.26 2.75
2841 6272 6.423001 GCAAATTGCATTAATGGAAGAGATCC 59.577 38.462 24.01 9.36 45.51 3.36
2852 6283 2.356069 GGAAGAGATCCGTTGATTTGGC 59.644 50.000 0.00 0.00 38.79 4.52
2853 6284 3.274288 GAAGAGATCCGTTGATTTGGCT 58.726 45.455 0.00 0.00 0.00 4.75
2854 6285 4.442706 GAAGAGATCCGTTGATTTGGCTA 58.557 43.478 0.00 0.00 0.00 3.93
2855 6286 4.487714 AGAGATCCGTTGATTTGGCTAA 57.512 40.909 0.00 0.00 0.00 3.09
2856 6287 4.446371 AGAGATCCGTTGATTTGGCTAAG 58.554 43.478 0.00 0.00 0.00 2.18
2857 6288 3.545703 AGATCCGTTGATTTGGCTAAGG 58.454 45.455 0.00 0.00 0.00 2.69
2858 6289 2.871096 TCCGTTGATTTGGCTAAGGT 57.129 45.000 0.00 0.00 0.00 3.50
2859 6290 3.985019 TCCGTTGATTTGGCTAAGGTA 57.015 42.857 0.00 0.00 0.00 3.08
2860 6291 3.869065 TCCGTTGATTTGGCTAAGGTAG 58.131 45.455 0.00 0.00 0.00 3.18
2861 6292 2.943033 CCGTTGATTTGGCTAAGGTAGG 59.057 50.000 0.00 0.00 0.00 3.18
2862 6293 3.370103 CCGTTGATTTGGCTAAGGTAGGA 60.370 47.826 0.00 0.00 0.00 2.94
2863 6294 4.258543 CGTTGATTTGGCTAAGGTAGGAA 58.741 43.478 0.00 0.00 0.00 3.36
2864 6295 4.698304 CGTTGATTTGGCTAAGGTAGGAAA 59.302 41.667 0.00 0.00 0.00 3.13
2865 6296 5.163754 CGTTGATTTGGCTAAGGTAGGAAAG 60.164 44.000 0.00 0.00 0.00 2.62
2866 6297 5.772393 TGATTTGGCTAAGGTAGGAAAGA 57.228 39.130 0.00 0.00 0.00 2.52
2867 6298 6.134535 TGATTTGGCTAAGGTAGGAAAGAA 57.865 37.500 0.00 0.00 0.00 2.52
2868 6299 6.731467 TGATTTGGCTAAGGTAGGAAAGAAT 58.269 36.000 0.00 0.00 0.00 2.40
2869 6300 6.828785 TGATTTGGCTAAGGTAGGAAAGAATC 59.171 38.462 0.00 0.00 0.00 2.52
2870 6301 6.388619 TTTGGCTAAGGTAGGAAAGAATCT 57.611 37.500 0.00 0.00 0.00 2.40
2871 6302 7.504926 TTTGGCTAAGGTAGGAAAGAATCTA 57.495 36.000 0.00 0.00 0.00 1.98
2872 6303 7.691993 TTGGCTAAGGTAGGAAAGAATCTAT 57.308 36.000 0.00 0.00 0.00 1.98
2873 6304 7.691993 TGGCTAAGGTAGGAAAGAATCTATT 57.308 36.000 0.00 0.00 0.00 1.73
2874 6305 7.736893 TGGCTAAGGTAGGAAAGAATCTATTC 58.263 38.462 0.00 0.00 37.06 1.75
2898 6329 9.442047 TTCTTTGTTTCCTAAAGAAAAATTGCA 57.558 25.926 9.67 0.00 45.80 4.08
2899 6330 9.612066 TCTTTGTTTCCTAAAGAAAAATTGCAT 57.388 25.926 0.00 0.00 45.93 3.96
2915 6346 8.638685 AAAATTGCATTAATGAAAGAGATCCG 57.361 30.769 19.73 0.00 0.00 4.18
2916 6347 6.949352 ATTGCATTAATGAAAGAGATCCGT 57.051 33.333 19.73 0.00 0.00 4.69
2917 6348 6.757897 TTGCATTAATGAAAGAGATCCGTT 57.242 33.333 19.73 0.00 0.00 4.44
2918 6349 6.122850 TGCATTAATGAAAGAGATCCGTTG 57.877 37.500 19.73 0.00 0.00 4.10
2919 6350 5.879777 TGCATTAATGAAAGAGATCCGTTGA 59.120 36.000 19.73 0.00 0.00 3.18
2920 6351 6.543465 TGCATTAATGAAAGAGATCCGTTGAT 59.457 34.615 19.73 0.00 0.00 2.57
2921 6352 7.067372 TGCATTAATGAAAGAGATCCGTTGATT 59.933 33.333 19.73 0.00 0.00 2.57
2922 6353 7.917505 GCATTAATGAAAGAGATCCGTTGATTT 59.082 33.333 19.73 0.00 0.00 2.17
2923 6354 9.229784 CATTAATGAAAGAGATCCGTTGATTTG 57.770 33.333 10.04 0.00 0.00 2.32
2924 6355 5.824904 ATGAAAGAGATCCGTTGATTTGG 57.175 39.130 0.00 0.00 0.00 3.28
2925 6356 3.440173 TGAAAGAGATCCGTTGATTTGGC 59.560 43.478 0.00 0.00 0.00 4.52
2926 6357 3.356529 AAGAGATCCGTTGATTTGGCT 57.643 42.857 0.00 0.00 0.00 4.75
2927 6358 4.487714 AAGAGATCCGTTGATTTGGCTA 57.512 40.909 0.00 0.00 0.00 3.93
2928 6359 4.487714 AGAGATCCGTTGATTTGGCTAA 57.512 40.909 0.00 0.00 0.00 3.09
2929 6360 4.446371 AGAGATCCGTTGATTTGGCTAAG 58.554 43.478 0.00 0.00 0.00 2.18
2930 6361 3.545703 AGATCCGTTGATTTGGCTAAGG 58.454 45.455 0.00 0.00 0.00 2.69
2931 6362 2.871096 TCCGTTGATTTGGCTAAGGT 57.129 45.000 0.00 0.00 0.00 3.50
2932 6363 3.985019 TCCGTTGATTTGGCTAAGGTA 57.015 42.857 0.00 0.00 0.00 3.08
2933 6364 3.869065 TCCGTTGATTTGGCTAAGGTAG 58.131 45.455 0.00 0.00 0.00 3.18
2934 6365 2.943033 CCGTTGATTTGGCTAAGGTAGG 59.057 50.000 0.00 0.00 0.00 3.18
2935 6366 3.606687 CGTTGATTTGGCTAAGGTAGGT 58.393 45.455 0.00 0.00 0.00 3.08
2936 6367 4.383335 CCGTTGATTTGGCTAAGGTAGGTA 60.383 45.833 0.00 0.00 0.00 3.08
2937 6368 5.180271 CGTTGATTTGGCTAAGGTAGGTAA 58.820 41.667 0.00 0.00 0.00 2.85
2938 6369 5.293569 CGTTGATTTGGCTAAGGTAGGTAAG 59.706 44.000 0.00 0.00 0.00 2.34
2939 6370 6.412214 GTTGATTTGGCTAAGGTAGGTAAGA 58.588 40.000 0.00 0.00 0.00 2.10
2940 6371 6.630203 TGATTTGGCTAAGGTAGGTAAGAA 57.370 37.500 0.00 0.00 0.00 2.52
2941 6372 7.208064 TGATTTGGCTAAGGTAGGTAAGAAT 57.792 36.000 0.00 0.00 0.00 2.40
2942 6373 7.280356 TGATTTGGCTAAGGTAGGTAAGAATC 58.720 38.462 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.889829 CATAGCCGAAAACCCAAACCA 59.110 47.619 0.00 0.00 0.00 3.67
43 44 1.302913 CCACAACACCCGGCACATA 60.303 57.895 0.00 0.00 0.00 2.29
48 49 2.033448 TGATCCACAACACCCGGC 59.967 61.111 0.00 0.00 0.00 6.13
76 77 9.485206 GTAGGGAAAATATGCTCGATAGTAAAA 57.515 33.333 0.00 0.00 37.40 1.52
141 142 9.642327 CTCTCTAGTCAATGATTTCCATAGATG 57.358 37.037 0.00 0.00 34.45 2.90
144 145 7.440198 TGCTCTCTAGTCAATGATTTCCATAG 58.560 38.462 0.00 0.00 34.45 2.23
146 147 6.244552 TGCTCTCTAGTCAATGATTTCCAT 57.755 37.500 0.00 0.00 36.99 3.41
170 171 1.450312 CTCCGTGGCCTTCATGTCC 60.450 63.158 3.32 0.00 0.00 4.02
193 194 0.866061 CGCCCTAACACGAGTGATCG 60.866 60.000 10.50 0.00 39.31 3.69
219 220 4.657013 TGATCAGTGCGGTAGATAGAGAT 58.343 43.478 0.00 0.00 0.00 2.75
236 237 1.489481 AGGAGGTCGAAGCATGATCA 58.511 50.000 0.00 0.00 0.00 2.92
293 2074 6.868864 AGTAGCACAAGTAAATAGACACACAG 59.131 38.462 0.00 0.00 0.00 3.66
296 2077 5.637810 GCAGTAGCACAAGTAAATAGACACA 59.362 40.000 0.00 0.00 41.58 3.72
300 2081 5.068234 ACGCAGTAGCACAAGTAAATAGA 57.932 39.130 0.00 0.00 41.94 1.98
366 2147 8.901748 CATGAAGTTAACCTTAACAATTCAACG 58.098 33.333 12.80 7.13 44.14 4.10
389 2170 5.126067 ACCGATAAGGAACCAAGATTCATG 58.874 41.667 0.00 0.00 45.00 3.07
390 2171 5.373812 ACCGATAAGGAACCAAGATTCAT 57.626 39.130 0.00 0.00 45.00 2.57
404 2185 6.927294 AAGAAGATAAAGCCAACCGATAAG 57.073 37.500 0.00 0.00 0.00 1.73
407 2188 6.590234 AAAAAGAAGATAAAGCCAACCGAT 57.410 33.333 0.00 0.00 0.00 4.18
441 2222 8.109705 TGAAAGACATTTGCAAGCTTTATAGA 57.890 30.769 14.46 0.00 0.00 1.98
502 2283 8.795842 TCCCTAAAATGCGTTAAAGAAGAATA 57.204 30.769 0.00 0.00 0.00 1.75
503 2284 7.696992 TCCCTAAAATGCGTTAAAGAAGAAT 57.303 32.000 0.00 0.00 0.00 2.40
505 2286 7.413657 CGATTCCCTAAAATGCGTTAAAGAAGA 60.414 37.037 0.00 0.00 0.00 2.87
506 2287 6.687105 CGATTCCCTAAAATGCGTTAAAGAAG 59.313 38.462 0.00 0.00 0.00 2.85
508 2289 5.065474 CCGATTCCCTAAAATGCGTTAAAGA 59.935 40.000 0.00 0.00 0.00 2.52
509 2290 5.270853 CCGATTCCCTAAAATGCGTTAAAG 58.729 41.667 0.00 0.00 0.00 1.85
516 2297 3.740115 TCTAGCCGATTCCCTAAAATGC 58.260 45.455 0.00 0.00 0.00 3.56
536 2317 8.755977 TCGTCCTATAACCCCTTATATCATTTC 58.244 37.037 0.00 0.00 0.00 2.17
547 2328 3.436761 CCTTCTCTCGTCCTATAACCCCT 60.437 52.174 0.00 0.00 0.00 4.79
553 2334 2.425818 TCCCCCTTCTCTCGTCCTATA 58.574 52.381 0.00 0.00 0.00 1.31
559 2340 0.977395 CACTTTCCCCCTTCTCTCGT 59.023 55.000 0.00 0.00 0.00 4.18
572 2353 6.644592 TGTGCAAATGCTATTTTACCACTTTC 59.355 34.615 6.97 0.00 42.66 2.62
577 2358 4.928615 GCTTGTGCAAATGCTATTTTACCA 59.071 37.500 7.49 0.00 42.66 3.25
581 2362 4.005487 TGGCTTGTGCAAATGCTATTTT 57.995 36.364 13.93 0.00 42.66 1.82
582 2363 3.681593 TGGCTTGTGCAAATGCTATTT 57.318 38.095 13.93 0.00 42.66 1.40
601 2382 2.912967 GTCATTTTCAGCGCTTGTGATG 59.087 45.455 7.50 10.65 0.00 3.07
618 2399 3.139077 GGTTCAGTGTTCTTTCGGTCAT 58.861 45.455 0.00 0.00 0.00 3.06
695 2483 1.757118 AGGCGTCTAATAGCAGCTTGA 59.243 47.619 0.00 0.00 34.54 3.02
751 2539 8.435187 AGATATGTCACATGTCAATTCTACCAT 58.565 33.333 16.14 0.00 0.00 3.55
855 2643 0.744414 TCTACGGCCAAGCATGCTTC 60.744 55.000 29.81 19.15 33.42 3.86
941 2729 3.276091 CGTTGGTCGCCAGTTGCA 61.276 61.111 0.00 0.00 41.33 4.08
947 2735 1.200716 CTAACTACTCGTTGGTCGCCA 59.799 52.381 0.00 0.00 39.67 5.69
958 2746 6.506500 TGTTACACCACTAGCTAACTACTC 57.493 41.667 0.00 0.00 0.00 2.59
963 2751 7.434602 GCTATACTTGTTACACCACTAGCTAAC 59.565 40.741 0.00 0.00 0.00 2.34
965 2753 6.832384 AGCTATACTTGTTACACCACTAGCTA 59.168 38.462 13.46 0.00 38.03 3.32
966 2754 5.657302 AGCTATACTTGTTACACCACTAGCT 59.343 40.000 10.80 10.80 35.73 3.32
967 2755 5.903810 AGCTATACTTGTTACACCACTAGC 58.096 41.667 7.62 7.62 0.00 3.42
968 2756 8.223177 ACTAGCTATACTTGTTACACCACTAG 57.777 38.462 0.00 0.00 29.37 2.57
981 2769 6.072064 CCGCCATTACTGTACTAGCTATACTT 60.072 42.308 0.00 0.00 0.00 2.24
982 2770 5.415077 CCGCCATTACTGTACTAGCTATACT 59.585 44.000 0.00 0.00 0.00 2.12
983 2771 5.638783 CCGCCATTACTGTACTAGCTATAC 58.361 45.833 0.00 0.41 0.00 1.47
984 2772 4.157289 GCCGCCATTACTGTACTAGCTATA 59.843 45.833 0.00 0.00 0.00 1.31
1049 2838 0.976590 GAAAGGGGAGGAGTAGGCGT 60.977 60.000 0.00 0.00 0.00 5.68
1054 2843 0.620700 GCCAGGAAAGGGGAGGAGTA 60.621 60.000 0.00 0.00 0.00 2.59
1062 2851 0.546598 AGTAATCGGCCAGGAAAGGG 59.453 55.000 2.24 0.00 0.00 3.95
1504 3293 1.002134 ATCGAAAGGGTGGTGCTGG 60.002 57.895 0.00 0.00 0.00 4.85
1547 3336 1.949847 AAGGAGATCTGTGCCGTCGG 61.950 60.000 6.99 6.99 0.00 4.79
1548 3337 0.526524 GAAGGAGATCTGTGCCGTCG 60.527 60.000 0.00 0.00 0.00 5.12
1549 3338 0.526524 CGAAGGAGATCTGTGCCGTC 60.527 60.000 0.00 2.19 0.00 4.79
1550 3339 1.513158 CGAAGGAGATCTGTGCCGT 59.487 57.895 0.00 0.00 0.00 5.68
1551 3340 1.880340 GCGAAGGAGATCTGTGCCG 60.880 63.158 0.00 0.00 0.00 5.69
1573 3362 2.311688 GATGTTCGTCATCCCCGGCT 62.312 60.000 0.00 0.00 45.05 5.52
1586 3375 1.076533 TTCTTCTCGCCGCGATGTTC 61.077 55.000 17.22 0.00 34.61 3.18
1595 3384 4.050553 CTGATCTTGATCTTCTTCTCGCC 58.949 47.826 11.31 0.00 0.00 5.54
1605 3394 1.411977 CCCTCGCACTGATCTTGATCT 59.588 52.381 11.31 0.00 0.00 2.75
1612 3401 1.520342 GCTCACCCTCGCACTGATC 60.520 63.158 0.00 0.00 0.00 2.92
1631 3420 0.687757 CTGAACCCGATCCTCCCTGA 60.688 60.000 0.00 0.00 0.00 3.86
1772 3561 1.347817 CTCTCCACGCGCTTCTTGAC 61.348 60.000 5.73 0.00 0.00 3.18
1829 3618 3.343421 GTGGTTGTGGACGCCGTC 61.343 66.667 9.15 9.15 0.00 4.79
2011 3800 1.007387 CGACATCCATCGATCGGCA 60.007 57.895 16.41 0.00 45.13 5.69
2021 3810 1.210931 GAACCGACGACGACATCCA 59.789 57.895 9.28 0.00 42.66 3.41
2055 3844 9.981114 CAATACTAACCTACATACATCATGTCA 57.019 33.333 0.00 0.00 44.99 3.58
2072 3861 5.154222 GGCTGCAAGTTGAACAATACTAAC 58.846 41.667 7.16 0.00 35.30 2.34
2077 3866 3.485394 TCTGGCTGCAAGTTGAACAATA 58.515 40.909 7.16 0.00 35.30 1.90
2087 3876 3.795623 AATTAGCAATCTGGCTGCAAG 57.204 42.857 0.50 0.00 45.44 4.01
2122 3911 1.202580 CCCTCCCTCTATTCGTGCTTG 60.203 57.143 0.00 0.00 0.00 4.01
2123 3912 1.123928 CCCTCCCTCTATTCGTGCTT 58.876 55.000 0.00 0.00 0.00 3.91
2135 3924 2.926329 TCCAAATTTTAGAGCCCTCCCT 59.074 45.455 0.00 0.00 0.00 4.20
2136 3925 3.382083 TCCAAATTTTAGAGCCCTCCC 57.618 47.619 0.00 0.00 0.00 4.30
2184 3973 4.263594 GGTGGGTGGGTGATAAGAAACTTA 60.264 45.833 0.00 0.00 0.00 2.24
2193 3982 1.151788 TGTGGGTGGGTGGGTGATA 60.152 57.895 0.00 0.00 0.00 2.15
2194 3983 2.451493 TGTGGGTGGGTGGGTGAT 60.451 61.111 0.00 0.00 0.00 3.06
2196 3985 3.814906 TGTGTGGGTGGGTGGGTG 61.815 66.667 0.00 0.00 0.00 4.61
2197 3986 3.816090 GTGTGTGGGTGGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
2198 3987 3.814906 TGTGTGTGGGTGGGTGGG 61.815 66.667 0.00 0.00 0.00 4.61
2199 3988 2.518349 GTGTGTGTGGGTGGGTGG 60.518 66.667 0.00 0.00 0.00 4.61
2200 3989 0.967887 TTTGTGTGTGTGGGTGGGTG 60.968 55.000 0.00 0.00 0.00 4.61
2201 3990 0.251832 TTTTGTGTGTGTGGGTGGGT 60.252 50.000 0.00 0.00 0.00 4.51
2202 3991 0.459489 CTTTTGTGTGTGTGGGTGGG 59.541 55.000 0.00 0.00 0.00 4.61
2205 3994 4.311606 GTTTTTCTTTTGTGTGTGTGGGT 58.688 39.130 0.00 0.00 0.00 4.51
2206 3995 3.366422 CGTTTTTCTTTTGTGTGTGTGGG 59.634 43.478 0.00 0.00 0.00 4.61
2207 3996 3.984633 ACGTTTTTCTTTTGTGTGTGTGG 59.015 39.130 0.00 0.00 0.00 4.17
2208 3997 5.568747 AACGTTTTTCTTTTGTGTGTGTG 57.431 34.783 0.00 0.00 0.00 3.82
2221 4010 4.606961 TCATGCAAGGAGAAACGTTTTTC 58.393 39.130 20.20 20.20 41.44 2.29
2222 4011 4.647424 TCATGCAAGGAGAAACGTTTTT 57.353 36.364 15.89 9.72 0.00 1.94
2223 4012 4.853924 ATCATGCAAGGAGAAACGTTTT 57.146 36.364 15.89 5.23 0.00 2.43
2224 4013 4.853924 AATCATGCAAGGAGAAACGTTT 57.146 36.364 14.57 14.57 0.00 3.60
2225 4014 4.396166 CCTAATCATGCAAGGAGAAACGTT 59.604 41.667 0.00 0.00 31.64 3.99
2226 4015 3.941483 CCTAATCATGCAAGGAGAAACGT 59.059 43.478 0.00 0.00 31.64 3.99
2227 4016 3.242870 GCCTAATCATGCAAGGAGAAACG 60.243 47.826 5.53 0.00 31.64 3.60
2228 4017 3.242870 CGCCTAATCATGCAAGGAGAAAC 60.243 47.826 5.53 0.00 32.48 2.78
2229 4018 2.945008 CGCCTAATCATGCAAGGAGAAA 59.055 45.455 5.53 0.00 32.48 2.52
2230 4019 2.564771 CGCCTAATCATGCAAGGAGAA 58.435 47.619 5.53 0.00 32.48 2.87
2232 4021 0.590195 GCGCCTAATCATGCAAGGAG 59.410 55.000 5.53 3.22 33.76 3.69
2233 4022 0.181114 AGCGCCTAATCATGCAAGGA 59.819 50.000 2.29 0.00 31.64 3.36
2234 4023 1.002033 GAAGCGCCTAATCATGCAAGG 60.002 52.381 2.29 0.00 0.00 3.61
2235 4024 1.945394 AGAAGCGCCTAATCATGCAAG 59.055 47.619 2.29 0.00 0.00 4.01
2236 4025 2.042686 AGAAGCGCCTAATCATGCAA 57.957 45.000 2.29 0.00 0.00 4.08
2238 4027 1.942657 TCAAGAAGCGCCTAATCATGC 59.057 47.619 2.29 0.00 0.00 4.06
2239 4028 3.201290 AGTCAAGAAGCGCCTAATCATG 58.799 45.455 2.29 1.20 0.00 3.07
2266 4055 0.109132 GGAGAAAATGCAGGCCGTTG 60.109 55.000 0.00 0.00 0.00 4.10
2277 4066 7.362920 CCCGTTTATTTGACTGATGGAGAAAAT 60.363 37.037 0.00 0.00 0.00 1.82
2306 4095 9.250624 CGATTCTATAAAAGTTTACAGAGGGAG 57.749 37.037 0.00 0.00 28.95 4.30
2307 4096 8.755977 ACGATTCTATAAAAGTTTACAGAGGGA 58.244 33.333 0.00 0.00 28.95 4.20
2308 4097 8.943909 ACGATTCTATAAAAGTTTACAGAGGG 57.056 34.615 0.00 0.00 28.95 4.30
2372 4161 9.922477 TCAAGTATTCTCCTCTCTCTGTAAATA 57.078 33.333 0.00 0.00 0.00 1.40
2373 4162 8.830915 TCAAGTATTCTCCTCTCTCTGTAAAT 57.169 34.615 0.00 0.00 0.00 1.40
2374 4163 8.651589 TTCAAGTATTCTCCTCTCTCTGTAAA 57.348 34.615 0.00 0.00 0.00 2.01
2375 4164 8.830915 ATTCAAGTATTCTCCTCTCTCTGTAA 57.169 34.615 0.00 0.00 0.00 2.41
2376 4165 7.504238 GGATTCAAGTATTCTCCTCTCTCTGTA 59.496 40.741 0.00 0.00 0.00 2.74
2377 4166 6.323739 GGATTCAAGTATTCTCCTCTCTCTGT 59.676 42.308 0.00 0.00 0.00 3.41
2378 4167 6.239289 GGGATTCAAGTATTCTCCTCTCTCTG 60.239 46.154 0.00 0.00 0.00 3.35
2379 4168 5.838521 GGGATTCAAGTATTCTCCTCTCTCT 59.161 44.000 0.00 0.00 0.00 3.10
2380 4169 5.011635 GGGGATTCAAGTATTCTCCTCTCTC 59.988 48.000 0.00 0.00 0.00 3.20
2381 4170 4.904853 GGGGATTCAAGTATTCTCCTCTCT 59.095 45.833 0.00 0.00 0.00 3.10
2382 4171 4.656112 TGGGGATTCAAGTATTCTCCTCTC 59.344 45.833 0.00 0.00 30.52 3.20
2383 4172 4.635473 TGGGGATTCAAGTATTCTCCTCT 58.365 43.478 0.00 0.00 30.52 3.69
2384 4173 5.574970 ATGGGGATTCAAGTATTCTCCTC 57.425 43.478 0.00 0.00 30.52 3.71
2385 4174 5.433051 TGAATGGGGATTCAAGTATTCTCCT 59.567 40.000 0.00 0.00 37.59 3.69
2386 4175 5.694995 TGAATGGGGATTCAAGTATTCTCC 58.305 41.667 0.00 0.00 37.59 3.71
2387 4176 5.240403 GCTGAATGGGGATTCAAGTATTCTC 59.760 44.000 0.00 0.00 39.73 2.87
2388 4177 5.136105 GCTGAATGGGGATTCAAGTATTCT 58.864 41.667 0.00 0.00 39.73 2.40
2389 4178 4.023707 CGCTGAATGGGGATTCAAGTATTC 60.024 45.833 0.00 0.00 39.73 1.75
2390 4179 3.885297 CGCTGAATGGGGATTCAAGTATT 59.115 43.478 0.00 0.00 39.73 1.89
2412 4201 1.133790 GATTGAGCATTCAGGTGGCAC 59.866 52.381 9.70 9.70 34.15 5.01
2560 5991 0.657840 CAGGCTAGCCGCACAATAAC 59.342 55.000 27.83 0.00 41.67 1.89
2563 5994 1.987807 ATCCAGGCTAGCCGCACAAT 61.988 55.000 27.83 14.91 41.67 2.71
2566 5997 1.005630 CTATCCAGGCTAGCCGCAC 60.006 63.158 27.83 4.18 41.67 5.34
2567 5998 2.872388 GCTATCCAGGCTAGCCGCA 61.872 63.158 27.83 15.87 41.67 5.69
2568 5999 2.047750 GCTATCCAGGCTAGCCGC 60.048 66.667 27.83 19.62 41.95 6.53
2569 6000 0.320247 CTTGCTATCCAGGCTAGCCG 60.320 60.000 27.83 21.14 40.72 5.52
2570 6001 1.001860 CTCTTGCTATCCAGGCTAGCC 59.998 57.143 27.19 27.19 40.72 3.93
2571 6002 1.607767 GCTCTTGCTATCCAGGCTAGC 60.608 57.143 14.56 14.56 41.59 3.42
2572 6003 1.690893 TGCTCTTGCTATCCAGGCTAG 59.309 52.381 0.00 0.00 40.48 3.42
2573 6004 1.793414 TGCTCTTGCTATCCAGGCTA 58.207 50.000 0.00 0.00 40.48 3.93
2574 6005 1.138568 ATGCTCTTGCTATCCAGGCT 58.861 50.000 0.00 0.00 40.48 4.58
2575 6006 2.038295 AGTATGCTCTTGCTATCCAGGC 59.962 50.000 0.00 0.00 40.48 4.85
2576 6007 3.323115 TCAGTATGCTCTTGCTATCCAGG 59.677 47.826 0.00 0.00 40.48 4.45
2577 6008 4.202192 TGTCAGTATGCTCTTGCTATCCAG 60.202 45.833 0.00 0.00 40.48 3.86
2578 6009 3.706086 TGTCAGTATGCTCTTGCTATCCA 59.294 43.478 0.00 0.00 40.48 3.41
2579 6010 4.054671 GTGTCAGTATGCTCTTGCTATCC 58.945 47.826 0.00 0.00 40.48 2.59
2580 6011 4.942852 AGTGTCAGTATGCTCTTGCTATC 58.057 43.478 0.00 0.00 40.48 2.08
2581 6012 4.498850 CGAGTGTCAGTATGCTCTTGCTAT 60.499 45.833 0.00 0.00 40.48 2.97
2582 6013 3.181496 CGAGTGTCAGTATGCTCTTGCTA 60.181 47.826 0.00 0.00 40.48 3.49
2583 6014 2.416566 CGAGTGTCAGTATGCTCTTGCT 60.417 50.000 0.00 0.00 40.48 3.91
2584 6015 1.923204 CGAGTGTCAGTATGCTCTTGC 59.077 52.381 0.00 0.00 40.20 4.01
2585 6016 3.175152 GTCGAGTGTCAGTATGCTCTTG 58.825 50.000 0.00 0.00 34.76 3.02
2586 6017 2.164624 GGTCGAGTGTCAGTATGCTCTT 59.835 50.000 0.00 0.00 34.76 2.85
2587 6018 1.746220 GGTCGAGTGTCAGTATGCTCT 59.254 52.381 0.00 0.00 34.76 4.09
2588 6019 1.202313 GGGTCGAGTGTCAGTATGCTC 60.202 57.143 0.00 0.00 34.76 4.26
2589 6020 0.818296 GGGTCGAGTGTCAGTATGCT 59.182 55.000 0.00 0.00 34.76 3.79
2590 6021 0.530744 TGGGTCGAGTGTCAGTATGC 59.469 55.000 0.00 0.00 34.76 3.14
2591 6022 2.427095 TCATGGGTCGAGTGTCAGTATG 59.573 50.000 0.00 0.00 37.54 2.39
2592 6023 2.735151 TCATGGGTCGAGTGTCAGTAT 58.265 47.619 0.00 0.00 0.00 2.12
2593 6024 2.209690 TCATGGGTCGAGTGTCAGTA 57.790 50.000 0.00 0.00 0.00 2.74
2594 6025 1.338107 TTCATGGGTCGAGTGTCAGT 58.662 50.000 0.00 0.00 0.00 3.41
2595 6026 2.680312 ATTCATGGGTCGAGTGTCAG 57.320 50.000 0.00 0.00 0.00 3.51
2596 6027 3.704061 TGATATTCATGGGTCGAGTGTCA 59.296 43.478 0.00 0.00 0.00 3.58
2597 6028 4.051922 GTGATATTCATGGGTCGAGTGTC 58.948 47.826 0.00 0.00 0.00 3.67
2598 6029 3.706594 AGTGATATTCATGGGTCGAGTGT 59.293 43.478 0.00 0.00 0.00 3.55
2599 6030 4.327982 AGTGATATTCATGGGTCGAGTG 57.672 45.455 0.00 0.00 0.00 3.51
2600 6031 6.479972 TTTAGTGATATTCATGGGTCGAGT 57.520 37.500 0.00 0.00 0.00 4.18
2601 6032 6.309009 CGATTTAGTGATATTCATGGGTCGAG 59.691 42.308 0.00 0.00 0.00 4.04
2602 6033 6.156519 CGATTTAGTGATATTCATGGGTCGA 58.843 40.000 0.00 0.00 0.00 4.20
2603 6034 5.926542 ACGATTTAGTGATATTCATGGGTCG 59.073 40.000 0.00 0.00 0.00 4.79
2604 6035 7.730364 AACGATTTAGTGATATTCATGGGTC 57.270 36.000 0.00 0.00 0.00 4.46
2605 6036 9.793259 ATTAACGATTTAGTGATATTCATGGGT 57.207 29.630 0.00 0.00 0.00 4.51
2615 6046 9.357161 AGGAGTAGAGATTAACGATTTAGTGAT 57.643 33.333 0.00 0.00 0.00 3.06
2616 6047 8.749026 AGGAGTAGAGATTAACGATTTAGTGA 57.251 34.615 0.00 0.00 0.00 3.41
2621 6052 9.144298 TCCATTAGGAGTAGAGATTAACGATTT 57.856 33.333 0.00 0.00 39.61 2.17
2622 6053 8.578151 GTCCATTAGGAGTAGAGATTAACGATT 58.422 37.037 0.00 0.00 46.92 3.34
2623 6054 7.094720 CGTCCATTAGGAGTAGAGATTAACGAT 60.095 40.741 0.00 0.00 46.92 3.73
2624 6055 6.204301 CGTCCATTAGGAGTAGAGATTAACGA 59.796 42.308 0.00 0.00 46.92 3.85
2625 6056 6.204301 TCGTCCATTAGGAGTAGAGATTAACG 59.796 42.308 0.00 0.00 46.92 3.18
2626 6057 7.507733 TCGTCCATTAGGAGTAGAGATTAAC 57.492 40.000 0.00 0.00 46.92 2.01
2627 6058 8.707796 ATTCGTCCATTAGGAGTAGAGATTAA 57.292 34.615 0.00 0.00 46.92 1.40
2628 6059 8.577296 CAATTCGTCCATTAGGAGTAGAGATTA 58.423 37.037 0.00 0.00 46.92 1.75
2629 6060 7.437748 CAATTCGTCCATTAGGAGTAGAGATT 58.562 38.462 0.00 0.00 46.92 2.40
2630 6061 6.015010 CCAATTCGTCCATTAGGAGTAGAGAT 60.015 42.308 0.00 0.00 46.92 2.75
2631 6062 5.302059 CCAATTCGTCCATTAGGAGTAGAGA 59.698 44.000 0.00 0.00 46.92 3.10
2632 6063 5.069251 ACCAATTCGTCCATTAGGAGTAGAG 59.931 44.000 0.00 0.00 46.92 2.43
2633 6064 4.960469 ACCAATTCGTCCATTAGGAGTAGA 59.040 41.667 0.00 0.00 46.92 2.59
2634 6065 5.277857 ACCAATTCGTCCATTAGGAGTAG 57.722 43.478 0.00 0.00 46.92 2.57
2635 6066 5.188163 TCAACCAATTCGTCCATTAGGAGTA 59.812 40.000 0.00 0.00 46.92 2.59
2636 6067 4.019681 TCAACCAATTCGTCCATTAGGAGT 60.020 41.667 0.00 0.00 46.92 3.85
2637 6068 4.513442 TCAACCAATTCGTCCATTAGGAG 58.487 43.478 0.00 0.00 46.92 3.69
2638 6069 4.561500 TCAACCAATTCGTCCATTAGGA 57.438 40.909 0.00 0.00 43.21 2.94
2639 6070 5.835113 ATTCAACCAATTCGTCCATTAGG 57.165 39.130 0.00 0.00 0.00 2.69
2640 6071 7.254795 GGACTATTCAACCAATTCGTCCATTAG 60.255 40.741 0.00 0.00 40.39 1.73
2641 6072 6.540914 GGACTATTCAACCAATTCGTCCATTA 59.459 38.462 0.00 0.00 40.39 1.90
2642 6073 5.357032 GGACTATTCAACCAATTCGTCCATT 59.643 40.000 0.00 0.00 40.39 3.16
2643 6074 4.881850 GGACTATTCAACCAATTCGTCCAT 59.118 41.667 0.00 0.00 40.39 3.41
2644 6075 4.258543 GGACTATTCAACCAATTCGTCCA 58.741 43.478 0.00 0.00 40.39 4.02
2645 6076 3.626217 GGGACTATTCAACCAATTCGTCC 59.374 47.826 0.00 0.00 40.18 4.79
2646 6077 3.626217 GGGGACTATTCAACCAATTCGTC 59.374 47.826 0.00 0.00 0.00 4.20
2647 6078 3.617284 GGGGACTATTCAACCAATTCGT 58.383 45.455 0.00 0.00 0.00 3.85
2648 6079 2.949644 GGGGGACTATTCAACCAATTCG 59.050 50.000 0.00 0.00 0.00 3.34
2666 6097 0.402887 AAACCGGTAGAAAGTGGGGG 59.597 55.000 8.00 0.00 0.00 5.40
2667 6098 3.639672 ATAAACCGGTAGAAAGTGGGG 57.360 47.619 8.00 0.00 0.00 4.96
2668 6099 5.474189 TGAAAATAAACCGGTAGAAAGTGGG 59.526 40.000 8.00 0.00 0.00 4.61
2669 6100 6.563222 TGAAAATAAACCGGTAGAAAGTGG 57.437 37.500 8.00 0.00 0.00 4.00
2670 6101 6.859508 GGTTGAAAATAAACCGGTAGAAAGTG 59.140 38.462 8.00 0.00 37.90 3.16
2671 6102 6.973843 GGTTGAAAATAAACCGGTAGAAAGT 58.026 36.000 8.00 0.00 37.90 2.66
2699 6130 3.326297 GTGGGGGTCATTTGATGGAAAAA 59.674 43.478 0.00 0.00 0.00 1.94
2700 6131 2.903135 GTGGGGGTCATTTGATGGAAAA 59.097 45.455 0.00 0.00 0.00 2.29
2701 6132 2.534990 GTGGGGGTCATTTGATGGAAA 58.465 47.619 0.00 0.00 0.00 3.13
2702 6133 1.272985 GGTGGGGGTCATTTGATGGAA 60.273 52.381 0.00 0.00 0.00 3.53
2703 6134 0.334676 GGTGGGGGTCATTTGATGGA 59.665 55.000 0.00 0.00 0.00 3.41
2704 6135 0.687427 GGGTGGGGGTCATTTGATGG 60.687 60.000 0.00 0.00 0.00 3.51
2705 6136 0.687427 GGGGTGGGGGTCATTTGATG 60.687 60.000 0.00 0.00 0.00 3.07
2706 6137 1.703461 GGGGTGGGGGTCATTTGAT 59.297 57.895 0.00 0.00 0.00 2.57
2707 6138 2.553330 GGGGGTGGGGGTCATTTGA 61.553 63.158 0.00 0.00 0.00 2.69
2708 6139 2.038813 GGGGGTGGGGGTCATTTG 59.961 66.667 0.00 0.00 0.00 2.32
2709 6140 2.455532 TGGGGGTGGGGGTCATTT 60.456 61.111 0.00 0.00 0.00 2.32
2710 6141 3.272847 GTGGGGGTGGGGGTCATT 61.273 66.667 0.00 0.00 0.00 2.57
2725 6156 4.939368 TTTCGGTGGGTGGGCGTG 62.939 66.667 0.00 0.00 0.00 5.34
2726 6157 4.941309 GTTTCGGTGGGTGGGCGT 62.941 66.667 0.00 0.00 0.00 5.68
2748 6179 4.148825 CTCTCCCCGGTTCGCTGG 62.149 72.222 0.00 0.00 43.38 4.85
2749 6180 2.356818 GATCTCTCCCCGGTTCGCTG 62.357 65.000 0.00 0.00 0.00 5.18
2750 6181 2.042843 ATCTCTCCCCGGTTCGCT 60.043 61.111 0.00 0.00 0.00 4.93
2751 6182 2.417936 GATCTCTCCCCGGTTCGC 59.582 66.667 0.00 0.00 0.00 4.70
2752 6183 2.846652 CGGATCTCTCCCCGGTTCG 61.847 68.421 0.00 0.00 41.89 3.95
2753 6184 1.328430 AACGGATCTCTCCCCGGTTC 61.328 60.000 0.00 0.00 44.49 3.62
2754 6185 1.305887 AACGGATCTCTCCCCGGTT 60.306 57.895 0.00 0.00 44.49 4.44
2758 6189 2.565841 CAAATCAACGGATCTCTCCCC 58.434 52.381 0.00 0.00 38.45 4.81
2759 6190 2.565841 CCAAATCAACGGATCTCTCCC 58.434 52.381 0.00 0.00 38.45 4.30
2760 6191 1.943340 GCCAAATCAACGGATCTCTCC 59.057 52.381 0.00 0.00 38.29 3.71
2761 6192 2.911484 AGCCAAATCAACGGATCTCTC 58.089 47.619 0.00 0.00 31.88 3.20
2762 6193 4.446371 CTTAGCCAAATCAACGGATCTCT 58.554 43.478 0.00 0.00 31.88 3.10
2763 6194 3.561725 CCTTAGCCAAATCAACGGATCTC 59.438 47.826 0.00 0.00 31.88 2.75
2764 6195 3.054361 ACCTTAGCCAAATCAACGGATCT 60.054 43.478 0.00 0.00 31.88 2.75
2765 6196 3.279434 ACCTTAGCCAAATCAACGGATC 58.721 45.455 0.00 0.00 31.88 3.36
2766 6197 3.366052 ACCTTAGCCAAATCAACGGAT 57.634 42.857 0.00 0.00 34.43 4.18
2767 6198 2.871096 ACCTTAGCCAAATCAACGGA 57.129 45.000 0.00 0.00 0.00 4.69
2768 6199 2.943033 CCTACCTTAGCCAAATCAACGG 59.057 50.000 0.00 0.00 0.00 4.44
2769 6200 3.869065 TCCTACCTTAGCCAAATCAACG 58.131 45.455 0.00 0.00 0.00 4.10
2770 6201 5.944007 TCTTTCCTACCTTAGCCAAATCAAC 59.056 40.000 0.00 0.00 0.00 3.18
2771 6202 6.134535 TCTTTCCTACCTTAGCCAAATCAA 57.865 37.500 0.00 0.00 0.00 2.57
2772 6203 5.772393 TCTTTCCTACCTTAGCCAAATCA 57.228 39.130 0.00 0.00 0.00 2.57
2773 6204 7.057264 AGATTCTTTCCTACCTTAGCCAAATC 58.943 38.462 0.00 0.00 0.00 2.17
2774 6205 6.974795 AGATTCTTTCCTACCTTAGCCAAAT 58.025 36.000 0.00 0.00 0.00 2.32
2775 6206 6.388619 AGATTCTTTCCTACCTTAGCCAAA 57.611 37.500 0.00 0.00 0.00 3.28
2776 6207 7.691993 ATAGATTCTTTCCTACCTTAGCCAA 57.308 36.000 0.00 0.00 0.00 4.52
2777 6208 7.691993 AATAGATTCTTTCCTACCTTAGCCA 57.308 36.000 0.00 0.00 0.00 4.75
2810 6241 6.907206 TCCATTAATGCAATTTGCTTTAGC 57.093 33.333 21.19 0.00 45.31 3.09
2811 6242 8.706492 TCTTCCATTAATGCAATTTGCTTTAG 57.294 30.769 21.19 13.54 45.31 1.85
2812 6243 8.530311 TCTCTTCCATTAATGCAATTTGCTTTA 58.470 29.630 21.19 20.48 45.31 1.85
2813 6244 7.388437 TCTCTTCCATTAATGCAATTTGCTTT 58.612 30.769 21.19 21.41 45.31 3.51
2814 6245 6.938507 TCTCTTCCATTAATGCAATTTGCTT 58.061 32.000 21.19 12.91 45.31 3.91
2815 6246 6.534475 TCTCTTCCATTAATGCAATTTGCT 57.466 33.333 21.19 5.71 45.31 3.91
2816 6247 6.423001 GGATCTCTTCCATTAATGCAATTTGC 59.577 38.462 14.49 14.49 44.74 3.68
2817 6248 6.639686 CGGATCTCTTCCATTAATGCAATTTG 59.360 38.462 10.11 0.00 45.78 2.32
2818 6249 6.322201 ACGGATCTCTTCCATTAATGCAATTT 59.678 34.615 10.11 0.00 45.78 1.82
2819 6250 5.829924 ACGGATCTCTTCCATTAATGCAATT 59.170 36.000 10.11 0.00 45.78 2.32
2820 6251 5.380043 ACGGATCTCTTCCATTAATGCAAT 58.620 37.500 10.11 0.00 45.78 3.56
2821 6252 4.780815 ACGGATCTCTTCCATTAATGCAA 58.219 39.130 10.11 0.23 45.78 4.08
2822 6253 4.422073 ACGGATCTCTTCCATTAATGCA 57.578 40.909 10.11 0.00 45.78 3.96
2823 6254 4.816385 TCAACGGATCTCTTCCATTAATGC 59.184 41.667 10.11 0.00 45.78 3.56
2824 6255 7.502120 AATCAACGGATCTCTTCCATTAATG 57.498 36.000 8.58 8.58 45.78 1.90
2825 6256 7.013655 CCAAATCAACGGATCTCTTCCATTAAT 59.986 37.037 0.00 0.00 45.78 1.40
2826 6257 6.318648 CCAAATCAACGGATCTCTTCCATTAA 59.681 38.462 0.00 0.00 45.78 1.40
2827 6258 5.822519 CCAAATCAACGGATCTCTTCCATTA 59.177 40.000 0.00 0.00 45.78 1.90
2828 6259 4.641989 CCAAATCAACGGATCTCTTCCATT 59.358 41.667 0.00 0.00 45.78 3.16
2829 6260 4.202441 CCAAATCAACGGATCTCTTCCAT 58.798 43.478 0.00 0.00 45.78 3.41
2830 6261 3.609853 CCAAATCAACGGATCTCTTCCA 58.390 45.455 0.00 0.00 45.78 3.53
2831 6262 2.356069 GCCAAATCAACGGATCTCTTCC 59.644 50.000 0.00 0.00 41.59 3.46
2832 6263 3.274288 AGCCAAATCAACGGATCTCTTC 58.726 45.455 0.00 0.00 31.88 2.87
2833 6264 3.356529 AGCCAAATCAACGGATCTCTT 57.643 42.857 0.00 0.00 31.88 2.85
2834 6265 4.446371 CTTAGCCAAATCAACGGATCTCT 58.554 43.478 0.00 0.00 31.88 3.10
2835 6266 3.561725 CCTTAGCCAAATCAACGGATCTC 59.438 47.826 0.00 0.00 31.88 2.75
2836 6267 3.054361 ACCTTAGCCAAATCAACGGATCT 60.054 43.478 0.00 0.00 31.88 2.75
2837 6268 3.279434 ACCTTAGCCAAATCAACGGATC 58.721 45.455 0.00 0.00 31.88 3.36
2838 6269 3.366052 ACCTTAGCCAAATCAACGGAT 57.634 42.857 0.00 0.00 34.43 4.18
2839 6270 2.871096 ACCTTAGCCAAATCAACGGA 57.129 45.000 0.00 0.00 0.00 4.69
2840 6271 2.943033 CCTACCTTAGCCAAATCAACGG 59.057 50.000 0.00 0.00 0.00 4.44
2841 6272 3.869065 TCCTACCTTAGCCAAATCAACG 58.131 45.455 0.00 0.00 0.00 4.10
2842 6273 5.944007 TCTTTCCTACCTTAGCCAAATCAAC 59.056 40.000 0.00 0.00 0.00 3.18
2843 6274 6.134535 TCTTTCCTACCTTAGCCAAATCAA 57.865 37.500 0.00 0.00 0.00 2.57
2844 6275 5.772393 TCTTTCCTACCTTAGCCAAATCA 57.228 39.130 0.00 0.00 0.00 2.57
2845 6276 7.057264 AGATTCTTTCCTACCTTAGCCAAATC 58.943 38.462 0.00 0.00 0.00 2.17
2846 6277 6.974795 AGATTCTTTCCTACCTTAGCCAAAT 58.025 36.000 0.00 0.00 0.00 2.32
2847 6278 6.388619 AGATTCTTTCCTACCTTAGCCAAA 57.611 37.500 0.00 0.00 0.00 3.28
2848 6279 7.691993 ATAGATTCTTTCCTACCTTAGCCAA 57.308 36.000 0.00 0.00 0.00 4.52
2849 6280 7.569111 AGAATAGATTCTTTCCTACCTTAGCCA 59.431 37.037 0.00 0.00 44.28 4.75
2850 6281 7.969004 AGAATAGATTCTTTCCTACCTTAGCC 58.031 38.462 0.00 0.00 44.28 3.93
2872 6303 9.442047 TGCAATTTTTCTTTAGGAAACAAAGAA 57.558 25.926 6.24 6.24 45.57 2.52
2873 6304 9.612066 ATGCAATTTTTCTTTAGGAAACAAAGA 57.388 25.926 0.00 0.00 42.80 2.52
2889 6320 9.090692 CGGATCTCTTTCATTAATGCAATTTTT 57.909 29.630 10.76 0.00 37.87 1.94
2890 6321 8.253113 ACGGATCTCTTTCATTAATGCAATTTT 58.747 29.630 10.76 0.00 37.87 1.82
2891 6322 7.775120 ACGGATCTCTTTCATTAATGCAATTT 58.225 30.769 10.76 0.00 37.87 1.82
2892 6323 7.338800 ACGGATCTCTTTCATTAATGCAATT 57.661 32.000 10.76 0.00 41.28 2.32
2893 6324 6.949352 ACGGATCTCTTTCATTAATGCAAT 57.051 33.333 10.76 0.00 0.00 3.56
2894 6325 6.374053 TCAACGGATCTCTTTCATTAATGCAA 59.626 34.615 10.76 5.46 0.00 4.08
2895 6326 5.879777 TCAACGGATCTCTTTCATTAATGCA 59.120 36.000 10.76 0.00 0.00 3.96
2896 6327 6.363577 TCAACGGATCTCTTTCATTAATGC 57.636 37.500 10.76 0.00 0.00 3.56
2897 6328 9.229784 CAAATCAACGGATCTCTTTCATTAATG 57.770 33.333 9.29 9.29 31.88 1.90
2898 6329 8.408601 CCAAATCAACGGATCTCTTTCATTAAT 58.591 33.333 0.00 0.00 31.88 1.40
2899 6330 7.628366 GCCAAATCAACGGATCTCTTTCATTAA 60.628 37.037 0.00 0.00 31.88 1.40
2900 6331 6.183360 GCCAAATCAACGGATCTCTTTCATTA 60.183 38.462 0.00 0.00 31.88 1.90
2901 6332 5.393461 GCCAAATCAACGGATCTCTTTCATT 60.393 40.000 0.00 0.00 31.88 2.57
2902 6333 4.096984 GCCAAATCAACGGATCTCTTTCAT 59.903 41.667 0.00 0.00 31.88 2.57
2903 6334 3.440173 GCCAAATCAACGGATCTCTTTCA 59.560 43.478 0.00 0.00 31.88 2.69
2904 6335 3.691609 AGCCAAATCAACGGATCTCTTTC 59.308 43.478 0.00 0.00 31.88 2.62
2905 6336 3.690460 AGCCAAATCAACGGATCTCTTT 58.310 40.909 0.00 0.00 31.88 2.52
2906 6337 3.356529 AGCCAAATCAACGGATCTCTT 57.643 42.857 0.00 0.00 31.88 2.85
2907 6338 4.446371 CTTAGCCAAATCAACGGATCTCT 58.554 43.478 0.00 0.00 31.88 3.10
2908 6339 3.561725 CCTTAGCCAAATCAACGGATCTC 59.438 47.826 0.00 0.00 31.88 2.75
2909 6340 3.054361 ACCTTAGCCAAATCAACGGATCT 60.054 43.478 0.00 0.00 31.88 2.75
2910 6341 3.279434 ACCTTAGCCAAATCAACGGATC 58.721 45.455 0.00 0.00 31.88 3.36
2911 6342 3.366052 ACCTTAGCCAAATCAACGGAT 57.634 42.857 0.00 0.00 34.43 4.18
2912 6343 2.871096 ACCTTAGCCAAATCAACGGA 57.129 45.000 0.00 0.00 0.00 4.69
2913 6344 2.943033 CCTACCTTAGCCAAATCAACGG 59.057 50.000 0.00 0.00 0.00 4.44
2914 6345 3.606687 ACCTACCTTAGCCAAATCAACG 58.393 45.455 0.00 0.00 0.00 4.10
2915 6346 6.412214 TCTTACCTACCTTAGCCAAATCAAC 58.588 40.000 0.00 0.00 0.00 3.18
2916 6347 6.630203 TCTTACCTACCTTAGCCAAATCAA 57.370 37.500 0.00 0.00 0.00 2.57
2917 6348 6.630203 TTCTTACCTACCTTAGCCAAATCA 57.370 37.500 0.00 0.00 0.00 2.57
2918 6349 7.731882 GATTCTTACCTACCTTAGCCAAATC 57.268 40.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.