Multiple sequence alignment - TraesCS1A01G121200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G121200 chr1A 100.000 4451 0 0 1 4451 133999616 134004066 0.000000e+00 8220.0
1 TraesCS1A01G121200 chr1D 98.226 3270 48 4 886 4152 122544939 122548201 0.000000e+00 5709.0
2 TraesCS1A01G121200 chr1D 97.218 1438 28 5 3003 4437 122548208 122549636 0.000000e+00 2423.0
3 TraesCS1A01G121200 chr1B 96.103 2592 80 11 1868 4451 186521257 186523835 0.000000e+00 4207.0
4 TraesCS1A01G121200 chr1B 94.355 992 53 2 886 1877 186518250 186519238 0.000000e+00 1519.0
5 TraesCS1A01G121200 chr1B 95.000 100 5 0 251 350 200649298 200649199 1.660000e-34 158.0
6 TraesCS1A01G121200 chr3D 87.379 206 25 1 3 207 574440627 574440832 7.440000e-58 235.0
7 TraesCS1A01G121200 chr3D 84.058 207 30 3 2 207 23242134 23241930 3.510000e-46 196.0
8 TraesCS1A01G121200 chr6D 92.053 151 10 2 247 397 50202862 50203010 1.250000e-50 211.0
9 TraesCS1A01G121200 chr3B 84.951 206 29 2 2 206 744560148 744560352 1.620000e-49 207.0
10 TraesCS1A01G121200 chr3B 84.058 207 31 2 2 207 746901453 746901248 9.770000e-47 198.0
11 TraesCS1A01G121200 chr3B 83.092 207 32 3 2 207 746987544 746987340 7.600000e-43 185.0
12 TraesCS1A01G121200 chr3B 94.340 106 6 0 245 350 568843591 568843696 3.560000e-36 163.0
13 TraesCS1A01G121200 chr3B 91.379 58 3 2 338 394 651538445 651538389 1.330000e-10 78.7
14 TraesCS1A01G121200 chr6B 83.981 206 31 2 3 207 152564988 152565192 3.510000e-46 196.0
15 TraesCS1A01G121200 chr2B 83.981 206 32 1 2 207 793503219 793503015 3.510000e-46 196.0
16 TraesCS1A01G121200 chr2B 93.458 107 6 1 242 348 38373086 38372981 1.660000e-34 158.0
17 TraesCS1A01G121200 chr7D 85.393 178 24 2 708 884 394242580 394242404 2.730000e-42 183.0
18 TraesCS1A01G121200 chr5A 89.041 146 16 0 251 396 697720898 697720753 9.830000e-42 182.0
19 TraesCS1A01G121200 chr5A 95.098 102 5 0 249 350 343767125 343767226 1.280000e-35 161.0
20 TraesCS1A01G121200 chr3A 89.116 147 14 1 243 389 703845541 703845685 9.830000e-42 182.0
21 TraesCS1A01G121200 chr4A 94.175 103 6 0 248 350 725273353 725273455 1.660000e-34 158.0
22 TraesCS1A01G121200 chr2A 94.118 102 6 0 249 350 508477264 508477163 5.960000e-34 156.0
23 TraesCS1A01G121200 chr4D 91.228 57 5 0 338 394 139346243 139346299 1.330000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G121200 chr1A 133999616 134004066 4450 False 8220 8220 100.000 1 4451 1 chr1A.!!$F1 4450
1 TraesCS1A01G121200 chr1D 122544939 122549636 4697 False 4066 5709 97.722 886 4437 2 chr1D.!!$F1 3551
2 TraesCS1A01G121200 chr1B 186518250 186523835 5585 False 2863 4207 95.229 886 4451 2 chr1B.!!$F1 3565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 463 0.107654 GTGCTACTGCCTACTTGGGG 60.108 60.0 0.00 0.0 38.71 4.96 F
539 540 0.179100 ACTGCCTACTGCTATGCGTG 60.179 55.0 0.00 0.0 42.00 5.34 F
543 544 0.179100 CCTACTGCTATGCGTGTGCT 60.179 55.0 7.16 0.0 43.34 4.40 F
884 885 0.320683 GCCCATTTGGTCAGGTTTGC 60.321 55.0 0.00 0.0 36.04 3.68 F
2031 4058 0.327924 TCCATGGATTCTGTTGCGGT 59.672 50.0 11.44 0.0 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1630 0.110486 TCTCACCCAACAAAGCCTCC 59.890 55.000 0.00 0.0 0.00 4.30 R
1837 1838 1.063972 CACACAACACCTTGGCACG 59.936 57.895 0.00 0.0 0.00 5.34 R
2031 4058 2.177394 TCGCTTGATGCACTTTACCA 57.823 45.000 0.00 0.0 43.06 3.25 R
2661 4688 1.995376 TTTCTTCCTTCCTTGCACCC 58.005 50.000 0.00 0.0 0.00 4.61 R
3611 5642 0.035056 CTGGACCCAGAACATGACCC 60.035 60.000 10.47 0.0 46.30 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.820059 ATGCTCAGAGTGTTTGACGA 57.180 45.000 0.00 0.00 0.00 4.20
20 21 2.595124 TGCTCAGAGTGTTTGACGAA 57.405 45.000 0.00 0.00 0.00 3.85
21 22 2.899976 TGCTCAGAGTGTTTGACGAAA 58.100 42.857 0.00 0.00 0.00 3.46
22 23 3.466836 TGCTCAGAGTGTTTGACGAAAT 58.533 40.909 0.00 0.00 0.00 2.17
23 24 3.248363 TGCTCAGAGTGTTTGACGAAATG 59.752 43.478 0.00 0.00 0.00 2.32
24 25 3.248602 GCTCAGAGTGTTTGACGAAATGT 59.751 43.478 0.00 0.00 0.00 2.71
36 37 2.433436 ACGAAATGTCAAGCCTAACCC 58.567 47.619 0.00 0.00 0.00 4.11
37 38 1.396996 CGAAATGTCAAGCCTAACCCG 59.603 52.381 0.00 0.00 0.00 5.28
38 39 2.706890 GAAATGTCAAGCCTAACCCGA 58.293 47.619 0.00 0.00 0.00 5.14
39 40 3.279434 GAAATGTCAAGCCTAACCCGAT 58.721 45.455 0.00 0.00 0.00 4.18
40 41 2.332063 ATGTCAAGCCTAACCCGATG 57.668 50.000 0.00 0.00 0.00 3.84
41 42 1.271856 TGTCAAGCCTAACCCGATGA 58.728 50.000 0.00 0.00 0.00 2.92
42 43 1.066430 TGTCAAGCCTAACCCGATGAC 60.066 52.381 0.00 0.00 38.08 3.06
43 44 1.207329 GTCAAGCCTAACCCGATGACT 59.793 52.381 0.00 0.00 35.49 3.41
44 45 1.207089 TCAAGCCTAACCCGATGACTG 59.793 52.381 0.00 0.00 0.00 3.51
45 46 1.066143 CAAGCCTAACCCGATGACTGT 60.066 52.381 0.00 0.00 0.00 3.55
46 47 1.276622 AGCCTAACCCGATGACTGTT 58.723 50.000 0.00 0.00 0.00 3.16
47 48 2.463752 AGCCTAACCCGATGACTGTTA 58.536 47.619 0.00 0.00 0.00 2.41
48 49 2.835764 AGCCTAACCCGATGACTGTTAA 59.164 45.455 0.00 0.00 0.00 2.01
49 50 3.118738 AGCCTAACCCGATGACTGTTAAG 60.119 47.826 0.00 0.00 0.00 1.85
50 51 3.369157 GCCTAACCCGATGACTGTTAAGT 60.369 47.826 0.00 0.00 40.21 2.24
51 52 4.828829 CCTAACCCGATGACTGTTAAGTT 58.171 43.478 0.00 0.00 36.52 2.66
52 53 5.243207 CCTAACCCGATGACTGTTAAGTTT 58.757 41.667 0.00 0.00 36.52 2.66
53 54 5.704053 CCTAACCCGATGACTGTTAAGTTTT 59.296 40.000 0.00 0.00 36.52 2.43
54 55 5.432885 AACCCGATGACTGTTAAGTTTTG 57.567 39.130 0.00 0.00 36.52 2.44
55 56 4.457466 ACCCGATGACTGTTAAGTTTTGT 58.543 39.130 0.00 0.00 36.52 2.83
56 57 4.885325 ACCCGATGACTGTTAAGTTTTGTT 59.115 37.500 0.00 0.00 36.52 2.83
57 58 5.212194 CCCGATGACTGTTAAGTTTTGTTG 58.788 41.667 0.00 0.00 36.52 3.33
58 59 5.220970 CCCGATGACTGTTAAGTTTTGTTGT 60.221 40.000 0.00 0.00 36.52 3.32
59 60 6.262601 CCGATGACTGTTAAGTTTTGTTGTT 58.737 36.000 0.00 0.00 36.52 2.83
60 61 7.411274 CCGATGACTGTTAAGTTTTGTTGTTA 58.589 34.615 0.00 0.00 36.52 2.41
61 62 7.911205 CCGATGACTGTTAAGTTTTGTTGTTAA 59.089 33.333 0.00 0.00 36.52 2.01
62 63 8.730427 CGATGACTGTTAAGTTTTGTTGTTAAC 58.270 33.333 0.00 0.00 36.52 2.01
63 64 9.562583 GATGACTGTTAAGTTTTGTTGTTAACA 57.437 29.630 3.59 3.59 41.88 2.41
64 65 8.730970 TGACTGTTAAGTTTTGTTGTTAACAC 57.269 30.769 8.07 4.61 40.19 3.32
65 66 8.569641 TGACTGTTAAGTTTTGTTGTTAACACT 58.430 29.630 8.07 0.00 40.19 3.55
66 67 8.736751 ACTGTTAAGTTTTGTTGTTAACACTG 57.263 30.769 8.07 0.00 40.19 3.66
67 68 8.569641 ACTGTTAAGTTTTGTTGTTAACACTGA 58.430 29.630 8.07 0.00 40.19 3.41
68 69 9.567848 CTGTTAAGTTTTGTTGTTAACACTGAT 57.432 29.630 8.07 0.00 40.19 2.90
96 97 9.797556 ATCATATACATGTATGCAATCAAATGC 57.202 29.630 25.48 0.00 38.80 3.56
97 98 8.245491 TCATATACATGTATGCAATCAAATGCC 58.755 33.333 25.48 0.00 38.19 4.40
98 99 3.708890 ACATGTATGCAATCAAATGCCG 58.291 40.909 0.00 0.00 45.83 5.69
99 100 3.380954 ACATGTATGCAATCAAATGCCGA 59.619 39.130 0.00 0.00 45.83 5.54
100 101 3.696281 TGTATGCAATCAAATGCCGAG 57.304 42.857 0.00 0.00 45.83 4.63
101 102 3.016031 TGTATGCAATCAAATGCCGAGT 58.984 40.909 0.00 0.00 45.83 4.18
102 103 4.195416 TGTATGCAATCAAATGCCGAGTA 58.805 39.130 0.00 0.00 45.83 2.59
103 104 4.637977 TGTATGCAATCAAATGCCGAGTAA 59.362 37.500 0.00 0.00 45.83 2.24
104 105 4.717233 ATGCAATCAAATGCCGAGTAAA 57.283 36.364 0.00 0.00 45.83 2.01
105 106 4.511617 TGCAATCAAATGCCGAGTAAAA 57.488 36.364 0.00 0.00 45.83 1.52
106 107 4.876125 TGCAATCAAATGCCGAGTAAAAA 58.124 34.783 0.00 0.00 45.83 1.94
107 108 5.477510 TGCAATCAAATGCCGAGTAAAAAT 58.522 33.333 0.00 0.00 45.83 1.82
108 109 5.931146 TGCAATCAAATGCCGAGTAAAAATT 59.069 32.000 0.00 0.00 45.83 1.82
109 110 6.128607 TGCAATCAAATGCCGAGTAAAAATTG 60.129 34.615 0.00 0.00 45.83 2.32
110 111 6.242829 CAATCAAATGCCGAGTAAAAATTGC 58.757 36.000 0.00 0.00 0.00 3.56
111 112 4.876125 TCAAATGCCGAGTAAAAATTGCA 58.124 34.783 0.00 0.00 0.00 4.08
112 113 5.477510 TCAAATGCCGAGTAAAAATTGCAT 58.522 33.333 0.00 0.00 40.87 3.96
113 114 5.576384 TCAAATGCCGAGTAAAAATTGCATC 59.424 36.000 0.00 0.00 38.40 3.91
114 115 4.989279 ATGCCGAGTAAAAATTGCATCT 57.011 36.364 0.00 0.00 34.58 2.90
115 116 4.782019 TGCCGAGTAAAAATTGCATCTT 57.218 36.364 0.00 0.00 0.00 2.40
116 117 5.888691 TGCCGAGTAAAAATTGCATCTTA 57.111 34.783 0.00 0.00 0.00 2.10
117 118 6.260870 TGCCGAGTAAAAATTGCATCTTAA 57.739 33.333 0.00 0.00 0.00 1.85
118 119 6.862209 TGCCGAGTAAAAATTGCATCTTAAT 58.138 32.000 0.00 0.00 0.00 1.40
119 120 6.751425 TGCCGAGTAAAAATTGCATCTTAATG 59.249 34.615 0.00 0.00 35.87 1.90
120 121 6.972328 GCCGAGTAAAAATTGCATCTTAATGA 59.028 34.615 0.00 0.00 34.61 2.57
121 122 7.044052 GCCGAGTAAAAATTGCATCTTAATGAC 60.044 37.037 0.00 0.00 34.61 3.06
122 123 7.967854 CCGAGTAAAAATTGCATCTTAATGACA 59.032 33.333 0.00 0.00 34.61 3.58
123 124 9.340695 CGAGTAAAAATTGCATCTTAATGACAA 57.659 29.630 0.00 0.00 34.61 3.18
128 129 7.671495 AAATTGCATCTTAATGACAAAACCC 57.329 32.000 0.00 0.00 34.70 4.11
129 130 4.799564 TGCATCTTAATGACAAAACCCC 57.200 40.909 0.00 0.00 34.61 4.95
130 131 4.155709 TGCATCTTAATGACAAAACCCCA 58.844 39.130 0.00 0.00 34.61 4.96
131 132 4.590647 TGCATCTTAATGACAAAACCCCAA 59.409 37.500 0.00 0.00 34.61 4.12
132 133 5.248020 TGCATCTTAATGACAAAACCCCAAT 59.752 36.000 0.00 0.00 34.61 3.16
133 134 6.438741 TGCATCTTAATGACAAAACCCCAATA 59.561 34.615 0.00 0.00 34.61 1.90
134 135 6.756542 GCATCTTAATGACAAAACCCCAATAC 59.243 38.462 0.00 0.00 34.61 1.89
135 136 7.578571 GCATCTTAATGACAAAACCCCAATACA 60.579 37.037 0.00 0.00 34.61 2.29
136 137 7.461182 TCTTAATGACAAAACCCCAATACAG 57.539 36.000 0.00 0.00 0.00 2.74
137 138 7.235079 TCTTAATGACAAAACCCCAATACAGA 58.765 34.615 0.00 0.00 0.00 3.41
138 139 5.722021 AATGACAAAACCCCAATACAGAC 57.278 39.130 0.00 0.00 0.00 3.51
139 140 4.171878 TGACAAAACCCCAATACAGACA 57.828 40.909 0.00 0.00 0.00 3.41
140 141 4.537751 TGACAAAACCCCAATACAGACAA 58.462 39.130 0.00 0.00 0.00 3.18
141 142 4.339814 TGACAAAACCCCAATACAGACAAC 59.660 41.667 0.00 0.00 0.00 3.32
142 143 3.639561 ACAAAACCCCAATACAGACAACC 59.360 43.478 0.00 0.00 0.00 3.77
143 144 3.603965 AAACCCCAATACAGACAACCA 57.396 42.857 0.00 0.00 0.00 3.67
144 145 3.603965 AACCCCAATACAGACAACCAA 57.396 42.857 0.00 0.00 0.00 3.67
145 146 3.825908 ACCCCAATACAGACAACCAAT 57.174 42.857 0.00 0.00 0.00 3.16
146 147 3.697166 ACCCCAATACAGACAACCAATC 58.303 45.455 0.00 0.00 0.00 2.67
147 148 3.075283 ACCCCAATACAGACAACCAATCA 59.925 43.478 0.00 0.00 0.00 2.57
148 149 4.085733 CCCCAATACAGACAACCAATCAA 58.914 43.478 0.00 0.00 0.00 2.57
149 150 4.082245 CCCCAATACAGACAACCAATCAAC 60.082 45.833 0.00 0.00 0.00 3.18
150 151 4.766891 CCCAATACAGACAACCAATCAACT 59.233 41.667 0.00 0.00 0.00 3.16
151 152 5.943416 CCCAATACAGACAACCAATCAACTA 59.057 40.000 0.00 0.00 0.00 2.24
152 153 6.094048 CCCAATACAGACAACCAATCAACTAG 59.906 42.308 0.00 0.00 0.00 2.57
153 154 6.655003 CCAATACAGACAACCAATCAACTAGT 59.345 38.462 0.00 0.00 0.00 2.57
154 155 7.148407 CCAATACAGACAACCAATCAACTAGTC 60.148 40.741 0.00 0.00 0.00 2.59
155 156 5.290493 ACAGACAACCAATCAACTAGTCA 57.710 39.130 0.00 0.00 0.00 3.41
156 157 5.869579 ACAGACAACCAATCAACTAGTCAT 58.130 37.500 0.00 0.00 0.00 3.06
157 158 5.934625 ACAGACAACCAATCAACTAGTCATC 59.065 40.000 0.00 0.00 0.00 2.92
158 159 6.169094 CAGACAACCAATCAACTAGTCATCT 58.831 40.000 0.00 0.00 0.00 2.90
159 160 7.039011 ACAGACAACCAATCAACTAGTCATCTA 60.039 37.037 0.00 0.00 0.00 1.98
160 161 7.984050 CAGACAACCAATCAACTAGTCATCTAT 59.016 37.037 0.00 0.00 0.00 1.98
161 162 7.984050 AGACAACCAATCAACTAGTCATCTATG 59.016 37.037 0.00 0.00 0.00 2.23
162 163 7.624549 ACAACCAATCAACTAGTCATCTATGT 58.375 34.615 0.00 0.00 0.00 2.29
163 164 8.103305 ACAACCAATCAACTAGTCATCTATGTT 58.897 33.333 0.00 0.00 0.00 2.71
164 165 8.950210 CAACCAATCAACTAGTCATCTATGTTT 58.050 33.333 0.00 0.00 0.00 2.83
165 166 9.520515 AACCAATCAACTAGTCATCTATGTTTT 57.479 29.630 0.00 0.00 0.00 2.43
166 167 9.520515 ACCAATCAACTAGTCATCTATGTTTTT 57.479 29.630 0.00 0.00 0.00 1.94
167 168 9.778993 CCAATCAACTAGTCATCTATGTTTTTG 57.221 33.333 0.00 0.00 0.00 2.44
170 171 8.547967 TCAACTAGTCATCTATGTTTTTGACC 57.452 34.615 0.00 0.00 39.39 4.02
171 172 7.606456 TCAACTAGTCATCTATGTTTTTGACCC 59.394 37.037 0.00 0.00 39.39 4.46
172 173 7.259088 ACTAGTCATCTATGTTTTTGACCCT 57.741 36.000 0.00 0.00 39.39 4.34
173 174 8.375493 ACTAGTCATCTATGTTTTTGACCCTA 57.625 34.615 0.00 0.00 39.39 3.53
174 175 8.993424 ACTAGTCATCTATGTTTTTGACCCTAT 58.007 33.333 0.00 0.00 39.39 2.57
175 176 9.838339 CTAGTCATCTATGTTTTTGACCCTATT 57.162 33.333 0.00 0.00 39.39 1.73
177 178 9.533831 AGTCATCTATGTTTTTGACCCTATTTT 57.466 29.630 0.00 0.00 39.39 1.82
180 181 8.872845 CATCTATGTTTTTGACCCTATTTTTGC 58.127 33.333 0.00 0.00 0.00 3.68
181 182 8.189119 TCTATGTTTTTGACCCTATTTTTGCT 57.811 30.769 0.00 0.00 0.00 3.91
182 183 8.646900 TCTATGTTTTTGACCCTATTTTTGCTT 58.353 29.630 0.00 0.00 0.00 3.91
183 184 9.921637 CTATGTTTTTGACCCTATTTTTGCTTA 57.078 29.630 0.00 0.00 0.00 3.09
185 186 9.791801 ATGTTTTTGACCCTATTTTTGCTTATT 57.208 25.926 0.00 0.00 0.00 1.40
186 187 9.267084 TGTTTTTGACCCTATTTTTGCTTATTC 57.733 29.630 0.00 0.00 0.00 1.75
187 188 8.432359 GTTTTTGACCCTATTTTTGCTTATTCG 58.568 33.333 0.00 0.00 0.00 3.34
188 189 7.455641 TTTGACCCTATTTTTGCTTATTCGA 57.544 32.000 0.00 0.00 0.00 3.71
189 190 6.677781 TGACCCTATTTTTGCTTATTCGAG 57.322 37.500 0.00 0.00 0.00 4.04
190 191 5.065988 TGACCCTATTTTTGCTTATTCGAGC 59.934 40.000 0.00 0.00 43.00 5.03
191 192 4.338400 ACCCTATTTTTGCTTATTCGAGCC 59.662 41.667 0.00 0.00 42.01 4.70
192 193 4.527564 CCTATTTTTGCTTATTCGAGCCG 58.472 43.478 0.00 0.00 42.01 5.52
193 194 4.035208 CCTATTTTTGCTTATTCGAGCCGT 59.965 41.667 0.00 0.00 42.01 5.68
194 195 2.892373 TTTTGCTTATTCGAGCCGTG 57.108 45.000 0.00 0.00 42.01 4.94
195 196 0.446222 TTTGCTTATTCGAGCCGTGC 59.554 50.000 0.00 0.00 42.01 5.34
196 197 0.391130 TTGCTTATTCGAGCCGTGCT 60.391 50.000 0.00 0.00 43.88 4.40
207 208 3.774528 CCGTGCTCAGCCTGGCTA 61.775 66.667 22.90 2.11 36.40 3.93
208 209 2.265739 CGTGCTCAGCCTGGCTAA 59.734 61.111 22.90 5.99 36.40 3.09
209 210 1.812922 CGTGCTCAGCCTGGCTAAG 60.813 63.158 22.90 18.72 36.40 2.18
210 211 1.599047 GTGCTCAGCCTGGCTAAGA 59.401 57.895 23.26 15.18 36.40 2.10
211 212 0.461693 GTGCTCAGCCTGGCTAAGAG 60.462 60.000 23.26 23.95 36.40 2.85
212 213 1.145819 GCTCAGCCTGGCTAAGAGG 59.854 63.158 27.63 15.19 36.40 3.69
213 214 1.828768 CTCAGCCTGGCTAAGAGGG 59.171 63.158 22.90 8.07 36.40 4.30
214 215 1.690633 TCAGCCTGGCTAAGAGGGG 60.691 63.158 22.90 7.27 36.40 4.79
215 216 1.690633 CAGCCTGGCTAAGAGGGGA 60.691 63.158 22.90 0.00 36.40 4.81
216 217 1.383803 AGCCTGGCTAAGAGGGGAG 60.384 63.158 21.98 0.00 36.99 4.30
217 218 3.113514 GCCTGGCTAAGAGGGGAGC 62.114 68.421 12.43 0.00 38.00 4.70
218 219 1.690633 CCTGGCTAAGAGGGGAGCA 60.691 63.158 0.00 0.00 40.64 4.26
219 220 1.274703 CCTGGCTAAGAGGGGAGCAA 61.275 60.000 0.00 0.00 40.64 3.91
220 221 0.842635 CTGGCTAAGAGGGGAGCAAT 59.157 55.000 0.00 0.00 40.64 3.56
221 222 0.548031 TGGCTAAGAGGGGAGCAATG 59.452 55.000 0.00 0.00 40.64 2.82
222 223 0.839946 GGCTAAGAGGGGAGCAATGA 59.160 55.000 0.00 0.00 40.64 2.57
223 224 1.212935 GGCTAAGAGGGGAGCAATGAA 59.787 52.381 0.00 0.00 40.64 2.57
224 225 2.357154 GGCTAAGAGGGGAGCAATGAAA 60.357 50.000 0.00 0.00 40.64 2.69
225 226 2.948315 GCTAAGAGGGGAGCAATGAAAG 59.052 50.000 0.00 0.00 38.62 2.62
226 227 1.844687 AAGAGGGGAGCAATGAAAGC 58.155 50.000 0.00 0.00 0.00 3.51
227 228 0.700564 AGAGGGGAGCAATGAAAGCA 59.299 50.000 0.00 0.00 0.00 3.91
228 229 1.076024 AGAGGGGAGCAATGAAAGCAA 59.924 47.619 0.00 0.00 0.00 3.91
229 230 1.203287 GAGGGGAGCAATGAAAGCAAC 59.797 52.381 0.00 0.00 0.00 4.17
230 231 0.247460 GGGGAGCAATGAAAGCAACC 59.753 55.000 0.00 0.00 0.00 3.77
231 232 0.968405 GGGAGCAATGAAAGCAACCA 59.032 50.000 0.00 0.00 34.20 3.67
232 233 1.344114 GGGAGCAATGAAAGCAACCAA 59.656 47.619 0.00 0.00 34.20 3.67
233 234 2.224257 GGGAGCAATGAAAGCAACCAAA 60.224 45.455 0.00 0.00 34.20 3.28
234 235 2.802247 GGAGCAATGAAAGCAACCAAAC 59.198 45.455 0.00 0.00 33.28 2.93
235 236 3.456280 GAGCAATGAAAGCAACCAAACA 58.544 40.909 0.00 0.00 0.00 2.83
236 237 3.197265 AGCAATGAAAGCAACCAAACAC 58.803 40.909 0.00 0.00 0.00 3.32
237 238 2.033832 GCAATGAAAGCAACCAAACACG 60.034 45.455 0.00 0.00 0.00 4.49
238 239 1.851658 ATGAAAGCAACCAAACACGC 58.148 45.000 0.00 0.00 0.00 5.34
239 240 0.179124 TGAAAGCAACCAAACACGCC 60.179 50.000 0.00 0.00 0.00 5.68
240 241 0.874175 GAAAGCAACCAAACACGCCC 60.874 55.000 0.00 0.00 0.00 6.13
241 242 1.326951 AAAGCAACCAAACACGCCCT 61.327 50.000 0.00 0.00 0.00 5.19
242 243 2.015227 AAGCAACCAAACACGCCCTG 62.015 55.000 0.00 0.00 0.00 4.45
243 244 2.727544 CAACCAAACACGCCCTGG 59.272 61.111 0.00 0.00 36.24 4.45
244 245 2.520741 AACCAAACACGCCCTGGG 60.521 61.111 8.86 8.86 34.31 4.45
245 246 3.367907 AACCAAACACGCCCTGGGT 62.368 57.895 15.56 0.00 34.31 4.51
251 252 2.824041 CACGCCCTGGGTGCATAC 60.824 66.667 25.86 0.60 39.43 2.39
252 253 4.109675 ACGCCCTGGGTGCATACC 62.110 66.667 25.86 3.60 46.76 2.73
253 254 3.797353 CGCCCTGGGTGCATACCT 61.797 66.667 14.34 0.00 46.66 3.08
254 255 2.124151 GCCCTGGGTGCATACCTG 60.124 66.667 15.56 10.24 46.66 4.00
255 256 2.597340 CCCTGGGTGCATACCTGG 59.403 66.667 21.89 21.89 46.66 4.45
256 257 2.124151 CCTGGGTGCATACCTGGC 60.124 66.667 18.75 0.00 46.66 4.85
257 258 2.124151 CTGGGTGCATACCTGGCC 60.124 66.667 11.15 0.00 46.66 5.36
258 259 2.938243 TGGGTGCATACCTGGCCA 60.938 61.111 4.71 4.71 46.66 5.36
259 260 2.358619 GGGTGCATACCTGGCCAA 59.641 61.111 7.01 0.00 46.66 4.52
260 261 1.304879 GGGTGCATACCTGGCCAAA 60.305 57.895 7.01 0.00 46.66 3.28
261 262 1.604147 GGGTGCATACCTGGCCAAAC 61.604 60.000 7.01 0.00 46.66 2.93
262 263 1.506262 GTGCATACCTGGCCAAACG 59.494 57.895 7.01 0.00 0.00 3.60
263 264 1.677300 TGCATACCTGGCCAAACGG 60.677 57.895 7.01 7.56 0.00 4.44
264 265 2.414785 GCATACCTGGCCAAACGGG 61.415 63.158 7.01 7.12 42.81 5.28
273 274 3.361977 CCAAACGGGCCGGTCTTG 61.362 66.667 31.78 26.44 0.00 3.02
274 275 2.593436 CAAACGGGCCGGTCTTGT 60.593 61.111 31.78 5.20 0.00 3.16
275 276 2.281276 AAACGGGCCGGTCTTGTC 60.281 61.111 31.78 0.00 0.00 3.18
276 277 4.675029 AACGGGCCGGTCTTGTCG 62.675 66.667 31.78 2.84 0.00 4.35
282 283 4.760047 CCGGTCTTGTCGGGCTGG 62.760 72.222 0.00 0.00 43.45 4.85
284 285 4.329545 GGTCTTGTCGGGCTGGCA 62.330 66.667 0.00 0.00 0.00 4.92
285 286 3.050275 GTCTTGTCGGGCTGGCAC 61.050 66.667 0.00 0.00 0.00 5.01
286 287 4.680237 TCTTGTCGGGCTGGCACG 62.680 66.667 11.23 11.23 45.35 5.34
337 338 4.647654 ACGACACGTGGCTTAGTG 57.352 55.556 21.24 5.68 39.18 2.74
338 339 1.006571 ACGACACGTGGCTTAGTGG 60.007 57.895 21.24 4.85 42.25 4.00
339 340 1.736645 CGACACGTGGCTTAGTGGG 60.737 63.158 21.24 0.00 42.25 4.61
340 341 2.032071 ACACGTGGCTTAGTGGGC 59.968 61.111 21.57 0.00 42.25 5.36
396 397 3.788766 GGCACGGCACAACTAGCG 61.789 66.667 0.00 0.00 0.00 4.26
397 398 4.445545 GCACGGCACAACTAGCGC 62.446 66.667 0.00 0.00 0.00 5.92
398 399 4.134187 CACGGCACAACTAGCGCG 62.134 66.667 0.00 0.00 33.79 6.86
399 400 4.351938 ACGGCACAACTAGCGCGA 62.352 61.111 12.10 0.00 32.57 5.87
400 401 3.838795 CGGCACAACTAGCGCGAC 61.839 66.667 12.10 0.04 0.00 5.19
401 402 2.736995 GGCACAACTAGCGCGACA 60.737 61.111 12.10 0.00 0.00 4.35
402 403 2.730672 GGCACAACTAGCGCGACAG 61.731 63.158 12.10 8.26 0.00 3.51
403 404 2.772189 CACAACTAGCGCGACAGC 59.228 61.111 12.10 0.00 40.74 4.40
415 416 3.900855 GACAGCGAGGGTCGTCTA 58.099 61.111 0.00 0.00 42.81 2.59
416 417 2.177950 GACAGCGAGGGTCGTCTAA 58.822 57.895 0.00 0.00 42.81 2.10
417 418 0.524862 GACAGCGAGGGTCGTCTAAA 59.475 55.000 0.00 0.00 42.81 1.85
418 419 0.963962 ACAGCGAGGGTCGTCTAAAA 59.036 50.000 0.00 0.00 42.81 1.52
419 420 1.342174 ACAGCGAGGGTCGTCTAAAAA 59.658 47.619 0.00 0.00 42.81 1.94
439 440 5.957842 AAAACCAATCGAGCTATTGTTGA 57.042 34.783 8.13 0.00 35.48 3.18
440 441 6.515272 AAAACCAATCGAGCTATTGTTGAT 57.485 33.333 8.13 0.00 35.48 2.57
441 442 6.515272 AAACCAATCGAGCTATTGTTGATT 57.485 33.333 8.13 0.00 35.48 2.57
442 443 6.515272 AACCAATCGAGCTATTGTTGATTT 57.485 33.333 8.13 0.00 35.48 2.17
443 444 5.883661 ACCAATCGAGCTATTGTTGATTTG 58.116 37.500 8.13 0.00 35.48 2.32
444 445 5.415701 ACCAATCGAGCTATTGTTGATTTGT 59.584 36.000 8.13 0.00 35.48 2.83
445 446 5.740569 CCAATCGAGCTATTGTTGATTTGTG 59.259 40.000 8.13 0.00 35.48 3.33
446 447 4.340894 TCGAGCTATTGTTGATTTGTGC 57.659 40.909 0.00 0.00 0.00 4.57
447 448 4.002982 TCGAGCTATTGTTGATTTGTGCT 58.997 39.130 0.00 0.00 0.00 4.40
448 449 5.175127 TCGAGCTATTGTTGATTTGTGCTA 58.825 37.500 0.00 0.00 0.00 3.49
449 450 5.063438 TCGAGCTATTGTTGATTTGTGCTAC 59.937 40.000 0.00 0.00 0.00 3.58
450 451 5.063944 CGAGCTATTGTTGATTTGTGCTACT 59.936 40.000 0.00 0.00 0.00 2.57
451 452 6.187125 AGCTATTGTTGATTTGTGCTACTG 57.813 37.500 0.00 0.00 0.00 2.74
452 453 4.795278 GCTATTGTTGATTTGTGCTACTGC 59.205 41.667 0.00 0.00 40.20 4.40
453 454 3.641437 TTGTTGATTTGTGCTACTGCC 57.359 42.857 0.00 0.00 38.71 4.85
454 455 2.862541 TGTTGATTTGTGCTACTGCCT 58.137 42.857 0.00 0.00 38.71 4.75
455 456 4.014569 TGTTGATTTGTGCTACTGCCTA 57.985 40.909 0.00 0.00 38.71 3.93
456 457 3.751175 TGTTGATTTGTGCTACTGCCTAC 59.249 43.478 0.00 0.00 38.71 3.18
457 458 3.981071 TGATTTGTGCTACTGCCTACT 57.019 42.857 0.00 0.00 38.71 2.57
458 459 4.286297 TGATTTGTGCTACTGCCTACTT 57.714 40.909 0.00 0.00 38.71 2.24
459 460 4.002982 TGATTTGTGCTACTGCCTACTTG 58.997 43.478 0.00 0.00 38.71 3.16
460 461 2.472695 TTGTGCTACTGCCTACTTGG 57.527 50.000 0.00 0.00 38.71 3.61
461 462 0.613260 TGTGCTACTGCCTACTTGGG 59.387 55.000 0.00 0.00 38.71 4.12
462 463 0.107654 GTGCTACTGCCTACTTGGGG 60.108 60.000 0.00 0.00 38.71 4.96
463 464 1.271840 TGCTACTGCCTACTTGGGGG 61.272 60.000 0.00 0.00 38.71 5.40
480 481 4.759205 GGGGGCGCCTTGTTCCAT 62.759 66.667 28.56 0.00 0.00 3.41
481 482 3.451894 GGGGCGCCTTGTTCCATG 61.452 66.667 28.56 0.00 0.00 3.66
482 483 3.451894 GGGCGCCTTGTTCCATGG 61.452 66.667 28.56 4.97 0.00 3.66
483 484 2.361104 GGCGCCTTGTTCCATGGA 60.361 61.111 22.15 11.44 31.33 3.41
484 485 1.754234 GGCGCCTTGTTCCATGGAT 60.754 57.895 22.15 0.00 31.33 3.41
485 486 1.728490 GGCGCCTTGTTCCATGGATC 61.728 60.000 22.15 15.81 31.33 3.36
486 487 2.016961 CGCCTTGTTCCATGGATCG 58.983 57.895 17.06 8.71 31.33 3.69
487 488 0.461870 CGCCTTGTTCCATGGATCGA 60.462 55.000 17.06 13.81 31.33 3.59
488 489 1.017387 GCCTTGTTCCATGGATCGAC 58.983 55.000 17.06 11.83 31.33 4.20
489 490 1.407437 GCCTTGTTCCATGGATCGACT 60.407 52.381 17.06 0.00 31.33 4.18
490 491 2.555199 CCTTGTTCCATGGATCGACTC 58.445 52.381 17.06 3.26 31.33 3.36
491 492 2.196749 CTTGTTCCATGGATCGACTCG 58.803 52.381 17.06 2.84 0.00 4.18
492 493 1.470051 TGTTCCATGGATCGACTCGA 58.530 50.000 17.06 3.06 41.13 4.04
493 494 1.134367 TGTTCCATGGATCGACTCGAC 59.866 52.381 17.06 8.66 39.18 4.20
494 495 1.405821 GTTCCATGGATCGACTCGACT 59.594 52.381 17.06 0.00 39.18 4.18
495 496 1.025041 TCCATGGATCGACTCGACTG 58.975 55.000 11.44 0.00 39.18 3.51
496 497 1.025041 CCATGGATCGACTCGACTGA 58.975 55.000 5.56 0.00 39.18 3.41
497 498 1.405463 CCATGGATCGACTCGACTGAA 59.595 52.381 5.56 0.00 39.18 3.02
498 499 2.542618 CCATGGATCGACTCGACTGAAG 60.543 54.545 5.56 0.00 39.18 3.02
499 500 1.822506 TGGATCGACTCGACTGAAGT 58.177 50.000 2.53 0.00 39.18 3.01
500 501 1.468914 TGGATCGACTCGACTGAAGTG 59.531 52.381 2.53 0.00 39.18 3.16
501 502 1.202200 GGATCGACTCGACTGAAGTGG 60.202 57.143 2.53 0.00 39.18 4.00
502 503 0.811915 ATCGACTCGACTGAAGTGGG 59.188 55.000 2.53 0.00 39.18 4.61
503 504 1.444553 CGACTCGACTGAAGTGGGC 60.445 63.158 0.00 0.00 0.00 5.36
504 505 1.079750 GACTCGACTGAAGTGGGCC 60.080 63.158 0.00 0.00 0.00 5.80
505 506 2.125912 CTCGACTGAAGTGGGCCG 60.126 66.667 0.00 0.00 0.00 6.13
506 507 2.599281 TCGACTGAAGTGGGCCGA 60.599 61.111 0.00 0.00 0.00 5.54
507 508 2.432628 CGACTGAAGTGGGCCGAC 60.433 66.667 10.38 10.38 0.00 4.79
508 509 2.741092 GACTGAAGTGGGCCGACA 59.259 61.111 20.91 0.00 0.00 4.35
509 510 1.070786 GACTGAAGTGGGCCGACAA 59.929 57.895 20.91 4.28 0.00 3.18
510 511 1.227853 ACTGAAGTGGGCCGACAAC 60.228 57.895 20.91 13.23 0.00 3.32
511 512 1.071471 CTGAAGTGGGCCGACAACT 59.929 57.895 20.91 6.92 0.00 3.16
512 513 0.320374 CTGAAGTGGGCCGACAACTA 59.680 55.000 20.91 2.55 0.00 2.24
513 514 0.759959 TGAAGTGGGCCGACAACTAA 59.240 50.000 20.91 0.00 0.00 2.24
514 515 1.349688 TGAAGTGGGCCGACAACTAAT 59.650 47.619 20.91 0.00 0.00 1.73
515 516 1.737793 GAAGTGGGCCGACAACTAATG 59.262 52.381 20.91 0.00 0.00 1.90
517 518 0.802494 GTGGGCCGACAACTAATGTG 59.198 55.000 13.75 0.00 44.12 3.21
518 519 0.958382 TGGGCCGACAACTAATGTGC 60.958 55.000 0.00 0.00 44.12 4.57
519 520 0.676782 GGGCCGACAACTAATGTGCT 60.677 55.000 0.00 0.00 44.12 4.40
520 521 1.406341 GGGCCGACAACTAATGTGCTA 60.406 52.381 0.00 0.00 44.12 3.49
521 522 1.664151 GGCCGACAACTAATGTGCTAC 59.336 52.381 0.00 0.00 44.12 3.58
522 523 2.618053 GCCGACAACTAATGTGCTACT 58.382 47.619 0.00 0.00 44.12 2.57
523 524 2.348666 GCCGACAACTAATGTGCTACTG 59.651 50.000 0.00 0.00 44.12 2.74
524 525 2.348666 CCGACAACTAATGTGCTACTGC 59.651 50.000 0.00 0.00 44.12 4.40
525 526 2.348666 CGACAACTAATGTGCTACTGCC 59.651 50.000 0.00 0.00 44.12 4.85
526 527 3.600388 GACAACTAATGTGCTACTGCCT 58.400 45.455 0.00 0.00 44.12 4.75
527 528 4.676986 CGACAACTAATGTGCTACTGCCTA 60.677 45.833 0.00 0.00 44.12 3.93
528 529 4.504858 ACAACTAATGTGCTACTGCCTAC 58.495 43.478 0.00 0.00 41.93 3.18
529 530 4.223032 ACAACTAATGTGCTACTGCCTACT 59.777 41.667 0.00 0.00 41.93 2.57
530 531 4.392921 ACTAATGTGCTACTGCCTACTG 57.607 45.455 0.00 0.00 38.71 2.74
531 532 2.029838 AATGTGCTACTGCCTACTGC 57.970 50.000 0.00 0.00 38.71 4.40
532 533 1.198713 ATGTGCTACTGCCTACTGCT 58.801 50.000 0.00 0.00 42.00 4.24
533 534 1.847328 TGTGCTACTGCCTACTGCTA 58.153 50.000 0.00 0.00 42.00 3.49
534 535 2.388735 TGTGCTACTGCCTACTGCTAT 58.611 47.619 0.00 0.00 42.00 2.97
535 536 2.101415 TGTGCTACTGCCTACTGCTATG 59.899 50.000 0.00 0.00 42.00 2.23
536 537 1.069204 TGCTACTGCCTACTGCTATGC 59.931 52.381 0.00 0.00 42.00 3.14
537 538 1.932604 GCTACTGCCTACTGCTATGCG 60.933 57.143 0.00 0.00 42.00 4.73
538 539 1.338337 CTACTGCCTACTGCTATGCGT 59.662 52.381 0.00 0.00 42.00 5.24
539 540 0.179100 ACTGCCTACTGCTATGCGTG 60.179 55.000 0.00 0.00 42.00 5.34
540 541 0.179100 CTGCCTACTGCTATGCGTGT 60.179 55.000 0.00 0.00 42.00 4.49
541 542 0.460109 TGCCTACTGCTATGCGTGTG 60.460 55.000 0.00 0.00 42.00 3.82
542 543 1.766143 GCCTACTGCTATGCGTGTGC 61.766 60.000 0.00 0.00 38.26 4.57
543 544 0.179100 CCTACTGCTATGCGTGTGCT 60.179 55.000 7.16 0.00 43.34 4.40
544 545 1.067060 CCTACTGCTATGCGTGTGCTA 59.933 52.381 7.16 0.00 43.34 3.49
545 546 2.389059 CTACTGCTATGCGTGTGCTAG 58.611 52.381 7.16 0.00 43.34 3.42
546 547 0.532573 ACTGCTATGCGTGTGCTAGT 59.467 50.000 7.16 6.29 43.34 2.57
547 548 0.926155 CTGCTATGCGTGTGCTAGTG 59.074 55.000 7.16 0.00 43.34 2.74
548 549 0.530288 TGCTATGCGTGTGCTAGTGA 59.470 50.000 7.16 0.00 43.34 3.41
549 550 1.067213 TGCTATGCGTGTGCTAGTGAA 60.067 47.619 7.16 0.00 43.34 3.18
550 551 1.999735 GCTATGCGTGTGCTAGTGAAA 59.000 47.619 0.00 0.00 43.34 2.69
551 552 2.609459 GCTATGCGTGTGCTAGTGAAAT 59.391 45.455 0.00 0.00 43.34 2.17
552 553 3.063997 GCTATGCGTGTGCTAGTGAAATT 59.936 43.478 0.00 0.00 43.34 1.82
553 554 4.437390 GCTATGCGTGTGCTAGTGAAATTT 60.437 41.667 0.00 0.00 43.34 1.82
554 555 3.980646 TGCGTGTGCTAGTGAAATTTT 57.019 38.095 0.00 0.00 43.34 1.82
555 556 4.300189 TGCGTGTGCTAGTGAAATTTTT 57.700 36.364 0.00 0.00 43.34 1.94
556 557 5.425577 TGCGTGTGCTAGTGAAATTTTTA 57.574 34.783 0.00 0.00 43.34 1.52
557 558 5.822278 TGCGTGTGCTAGTGAAATTTTTAA 58.178 33.333 0.00 0.00 43.34 1.52
558 559 6.266323 TGCGTGTGCTAGTGAAATTTTTAAA 58.734 32.000 0.00 0.00 43.34 1.52
559 560 6.752351 TGCGTGTGCTAGTGAAATTTTTAAAA 59.248 30.769 0.00 0.00 43.34 1.52
560 561 7.275779 TGCGTGTGCTAGTGAAATTTTTAAAAA 59.724 29.630 15.38 15.38 43.34 1.94
576 577 2.594529 AAAAATCGTGCGCTAGTGTG 57.405 45.000 9.73 0.00 0.00 3.82
586 587 2.984458 GCGCTAGTGTGCTACTACTAC 58.016 52.381 0.00 0.00 45.43 2.73
587 588 2.599377 GCGCTAGTGTGCTACTACTACG 60.599 54.545 0.00 0.00 45.43 3.51
588 589 2.606725 CGCTAGTGTGCTACTACTACGT 59.393 50.000 0.00 0.00 40.89 3.57
589 590 3.798878 CGCTAGTGTGCTACTACTACGTA 59.201 47.826 0.00 0.00 40.89 3.57
590 591 4.085158 CGCTAGTGTGCTACTACTACGTAG 60.085 50.000 20.97 20.97 40.89 3.51
598 599 4.455917 CTACTACTACGTAGCAGTGAGC 57.544 50.000 30.38 0.00 39.51 4.26
607 608 3.261933 GCAGTGAGCCTTGCAGTC 58.738 61.111 0.00 0.00 40.02 3.51
608 609 1.302351 GCAGTGAGCCTTGCAGTCT 60.302 57.895 0.00 0.00 40.02 3.24
609 610 0.888285 GCAGTGAGCCTTGCAGTCTT 60.888 55.000 0.00 0.00 40.02 3.01
610 611 0.873054 CAGTGAGCCTTGCAGTCTTG 59.127 55.000 0.00 0.00 0.00 3.02
622 623 2.476051 GTCTTGCGGACGTGCATG 59.524 61.111 8.11 3.82 45.78 4.06
623 624 3.422303 TCTTGCGGACGTGCATGC 61.422 61.111 11.82 11.82 45.78 4.06
624 625 3.725459 CTTGCGGACGTGCATGCA 61.725 61.111 18.46 18.46 45.78 3.96
625 626 3.042842 CTTGCGGACGTGCATGCAT 62.043 57.895 25.64 8.94 45.78 3.96
626 627 3.325493 TTGCGGACGTGCATGCATG 62.325 57.895 33.18 33.18 45.78 4.06
642 643 2.049156 TGCCTTCGCACGAGACAG 60.049 61.111 0.00 0.00 41.12 3.51
643 644 3.482783 GCCTTCGCACGAGACAGC 61.483 66.667 0.00 0.00 34.03 4.40
644 645 2.259818 CCTTCGCACGAGACAGCT 59.740 61.111 0.00 0.00 0.00 4.24
645 646 1.506718 CCTTCGCACGAGACAGCTA 59.493 57.895 0.00 0.00 0.00 3.32
646 647 0.524392 CCTTCGCACGAGACAGCTAG 60.524 60.000 0.00 0.00 0.00 3.42
647 648 1.136872 CTTCGCACGAGACAGCTAGC 61.137 60.000 6.62 6.62 0.00 3.42
648 649 1.862602 TTCGCACGAGACAGCTAGCA 61.863 55.000 18.83 0.00 0.00 3.49
649 650 1.226802 CGCACGAGACAGCTAGCAT 60.227 57.895 18.83 4.01 0.00 3.79
650 651 1.477826 CGCACGAGACAGCTAGCATG 61.478 60.000 18.83 14.32 0.00 4.06
651 652 1.760268 GCACGAGACAGCTAGCATGC 61.760 60.000 18.83 10.51 0.00 4.06
652 653 1.226802 ACGAGACAGCTAGCATGCG 60.227 57.895 18.83 14.61 38.13 4.73
653 654 2.584065 CGAGACAGCTAGCATGCGC 61.584 63.158 18.83 10.95 38.13 6.09
654 655 2.584065 GAGACAGCTAGCATGCGCG 61.584 63.158 18.83 0.00 45.49 6.86
655 656 2.583319 GACAGCTAGCATGCGCGA 60.583 61.111 18.83 0.54 45.49 5.87
656 657 2.125552 ACAGCTAGCATGCGCGAA 60.126 55.556 18.83 0.00 45.49 4.70
657 658 2.322422 CAGCTAGCATGCGCGAAC 59.678 61.111 18.83 1.47 45.49 3.95
658 659 3.257561 AGCTAGCATGCGCGAACG 61.258 61.111 18.83 0.00 45.49 3.95
659 660 3.254654 GCTAGCATGCGCGAACGA 61.255 61.111 12.10 0.00 45.49 3.85
660 661 2.615618 CTAGCATGCGCGAACGAC 59.384 61.111 12.10 0.00 45.49 4.34
661 662 3.184881 CTAGCATGCGCGAACGACG 62.185 63.158 12.10 0.00 45.49 5.12
695 696 3.449227 CCTGCCTCCTCGCACGTA 61.449 66.667 0.00 0.00 34.35 3.57
696 697 2.571757 CTGCCTCCTCGCACGTAA 59.428 61.111 0.00 0.00 34.35 3.18
697 698 1.080093 CTGCCTCCTCGCACGTAAA 60.080 57.895 0.00 0.00 34.35 2.01
698 699 1.352156 CTGCCTCCTCGCACGTAAAC 61.352 60.000 0.00 0.00 34.35 2.01
699 700 2.442188 GCCTCCTCGCACGTAAACG 61.442 63.158 0.04 0.04 46.33 3.60
710 711 1.422269 CGTAAACGTGCCAATCGGG 59.578 57.895 0.00 0.00 35.41 5.14
719 720 2.895372 CCAATCGGGCCTACGTGC 60.895 66.667 0.84 0.00 34.94 5.34
733 734 2.561373 GTGCCAGCACGTTTAGCC 59.439 61.111 7.07 0.00 37.19 3.93
734 735 2.112087 TGCCAGCACGTTTAGCCA 59.888 55.556 0.00 0.00 0.00 4.75
735 736 1.303236 TGCCAGCACGTTTAGCCAT 60.303 52.632 0.00 0.00 0.00 4.40
736 737 1.137404 GCCAGCACGTTTAGCCATG 59.863 57.895 0.00 0.00 0.00 3.66
737 738 1.802636 CCAGCACGTTTAGCCATGG 59.197 57.895 7.63 7.63 0.00 3.66
738 739 1.656818 CCAGCACGTTTAGCCATGGG 61.657 60.000 15.13 0.00 0.00 4.00
795 796 4.078516 GGCACGGCCCGAGTACTT 62.079 66.667 11.71 0.00 44.06 2.24
796 797 2.713967 GGCACGGCCCGAGTACTTA 61.714 63.158 11.71 0.00 44.06 2.24
797 798 1.226888 GCACGGCCCGAGTACTTAG 60.227 63.158 11.71 0.00 0.00 2.18
798 799 1.226888 CACGGCCCGAGTACTTAGC 60.227 63.158 11.71 0.13 0.00 3.09
799 800 2.025727 CGGCCCGAGTACTTAGCG 59.974 66.667 0.00 0.00 0.00 4.26
800 801 2.768492 CGGCCCGAGTACTTAGCGT 61.768 63.158 0.00 0.00 0.00 5.07
801 802 1.226888 GGCCCGAGTACTTAGCGTG 60.227 63.158 0.00 0.00 0.00 5.34
802 803 1.877165 GCCCGAGTACTTAGCGTGC 60.877 63.158 0.00 0.00 0.00 5.34
803 804 1.226888 CCCGAGTACTTAGCGTGCC 60.227 63.158 0.00 0.00 0.00 5.01
804 805 1.664321 CCCGAGTACTTAGCGTGCCT 61.664 60.000 0.00 0.00 0.00 4.75
805 806 0.525668 CCGAGTACTTAGCGTGCCTG 60.526 60.000 0.00 0.00 0.00 4.85
806 807 1.140407 CGAGTACTTAGCGTGCCTGC 61.140 60.000 0.00 0.00 0.00 4.85
807 808 0.806492 GAGTACTTAGCGTGCCTGCC 60.806 60.000 0.00 0.00 34.65 4.85
808 809 1.814169 GTACTTAGCGTGCCTGCCC 60.814 63.158 0.00 0.00 34.65 5.36
809 810 3.365291 TACTTAGCGTGCCTGCCCG 62.365 63.158 0.00 0.00 34.65 6.13
834 835 2.344500 CCGTGCCTGACCCGTTTA 59.656 61.111 0.00 0.00 0.00 2.01
835 836 1.301874 CCGTGCCTGACCCGTTTAA 60.302 57.895 0.00 0.00 0.00 1.52
836 837 1.571215 CCGTGCCTGACCCGTTTAAC 61.571 60.000 0.00 0.00 0.00 2.01
837 838 1.571215 CGTGCCTGACCCGTTTAACC 61.571 60.000 0.00 0.00 0.00 2.85
838 839 1.073548 TGCCTGACCCGTTTAACCC 59.926 57.895 0.00 0.00 0.00 4.11
839 840 1.073548 GCCTGACCCGTTTAACCCA 59.926 57.895 0.00 0.00 0.00 4.51
840 841 0.958876 GCCTGACCCGTTTAACCCAG 60.959 60.000 0.00 0.00 0.00 4.45
841 842 0.322187 CCTGACCCGTTTAACCCAGG 60.322 60.000 0.00 0.00 35.75 4.45
842 843 0.958876 CTGACCCGTTTAACCCAGGC 60.959 60.000 0.00 0.00 0.00 4.85
843 844 1.676635 GACCCGTTTAACCCAGGCC 60.677 63.158 0.00 0.00 0.00 5.19
844 845 2.748647 CCCGTTTAACCCAGGCCG 60.749 66.667 0.00 0.00 0.00 6.13
845 846 2.032987 CCGTTTAACCCAGGCCGT 59.967 61.111 0.00 0.00 0.00 5.68
846 847 2.329614 CCGTTTAACCCAGGCCGTG 61.330 63.158 0.00 0.00 0.00 4.94
847 848 2.959372 GTTTAACCCAGGCCGTGC 59.041 61.111 0.00 0.00 0.00 5.34
878 879 3.451894 GCCGGCCCATTTGGTCAG 61.452 66.667 18.11 0.00 39.41 3.51
879 880 2.755469 CCGGCCCATTTGGTCAGG 60.755 66.667 0.00 0.00 39.41 3.86
880 881 2.035626 CGGCCCATTTGGTCAGGT 59.964 61.111 0.00 0.00 39.41 4.00
881 882 1.606313 CGGCCCATTTGGTCAGGTT 60.606 57.895 0.00 0.00 39.41 3.50
882 883 1.184970 CGGCCCATTTGGTCAGGTTT 61.185 55.000 0.00 0.00 39.41 3.27
883 884 0.321346 GGCCCATTTGGTCAGGTTTG 59.679 55.000 0.00 0.00 39.18 2.93
884 885 0.320683 GCCCATTTGGTCAGGTTTGC 60.321 55.000 0.00 0.00 36.04 3.68
1101 1102 3.090532 GCCGTTCCATCCCCTCCT 61.091 66.667 0.00 0.00 0.00 3.69
1537 1538 1.903860 ACGATGCCTGTAGGGTGTTTA 59.096 47.619 0.00 0.00 37.43 2.01
1562 1563 4.329545 GTCGAGGGGCTGGTGCAA 62.330 66.667 0.00 0.00 41.91 4.08
1837 1838 2.097825 AGCATGGAAAAGTGGAGCATC 58.902 47.619 0.00 0.00 0.00 3.91
2031 4058 0.327924 TCCATGGATTCTGTTGCGGT 59.672 50.000 11.44 0.00 0.00 5.68
2148 4175 2.747446 GTGTAGCGTGGGTGAAATGAAT 59.253 45.455 0.00 0.00 0.00 2.57
3270 5301 6.040166 GGATGGCTGTATCAATTTTCAGTGAT 59.960 38.462 0.00 0.00 40.77 3.06
3546 5577 6.612456 TGGGAGCATAATTTTGGATGAATTCT 59.388 34.615 7.05 0.00 0.00 2.40
3611 5642 5.179368 ACCATCAGTTGATAAACGTGAGTTG 59.821 40.000 0.00 0.00 42.92 3.16
3663 5694 3.990469 GTCTACATACTGCCATCATTCGG 59.010 47.826 0.00 0.00 0.00 4.30
3711 5742 3.133542 TCACTTATCATCTGCCTGGAGTG 59.866 47.826 0.00 0.00 0.00 3.51
4131 7315 4.809958 CAGATGTATGGAAGACTTGAGCAG 59.190 45.833 0.00 0.00 0.00 4.24
4316 7502 0.608640 CACTGTGTCTGAGTACCCCC 59.391 60.000 0.00 0.00 0.00 5.40
4361 7547 1.135286 GGAGCAGCTACCATTTGTTGC 60.135 52.381 0.00 0.00 44.69 4.17
4421 7607 7.807907 GTGCTTAACACTGCTAAAAATGTATGT 59.192 33.333 0.00 0.00 46.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.820059 TCGTCAAACACTCTGAGCAT 57.180 45.000 4.19 0.00 0.00 3.79
1 2 2.595124 TTCGTCAAACACTCTGAGCA 57.405 45.000 4.19 0.00 0.00 4.26
2 3 3.248602 ACATTTCGTCAAACACTCTGAGC 59.751 43.478 4.19 0.00 0.00 4.26
3 4 5.011451 GACATTTCGTCAAACACTCTGAG 57.989 43.478 2.45 2.45 44.69 3.35
15 16 2.418976 GGGTTAGGCTTGACATTTCGTC 59.581 50.000 0.00 0.00 45.61 4.20
16 17 2.433436 GGGTTAGGCTTGACATTTCGT 58.567 47.619 0.00 0.00 0.00 3.85
17 18 1.396996 CGGGTTAGGCTTGACATTTCG 59.603 52.381 0.00 0.00 0.00 3.46
18 19 2.706890 TCGGGTTAGGCTTGACATTTC 58.293 47.619 0.00 0.00 0.00 2.17
19 20 2.871096 TCGGGTTAGGCTTGACATTT 57.129 45.000 0.00 0.00 0.00 2.32
20 21 2.238646 TCATCGGGTTAGGCTTGACATT 59.761 45.455 0.00 0.00 0.00 2.71
21 22 1.837439 TCATCGGGTTAGGCTTGACAT 59.163 47.619 0.00 0.00 0.00 3.06
22 23 1.066430 GTCATCGGGTTAGGCTTGACA 60.066 52.381 8.05 0.00 34.92 3.58
23 24 1.207329 AGTCATCGGGTTAGGCTTGAC 59.793 52.381 5.33 5.33 34.99 3.18
24 25 1.207089 CAGTCATCGGGTTAGGCTTGA 59.793 52.381 0.00 0.00 0.00 3.02
25 26 1.066143 ACAGTCATCGGGTTAGGCTTG 60.066 52.381 0.00 0.00 0.00 4.01
26 27 1.276622 ACAGTCATCGGGTTAGGCTT 58.723 50.000 0.00 0.00 0.00 4.35
27 28 1.276622 AACAGTCATCGGGTTAGGCT 58.723 50.000 0.00 0.00 0.00 4.58
28 29 2.973694 TAACAGTCATCGGGTTAGGC 57.026 50.000 0.00 0.00 0.00 3.93
29 30 4.467198 ACTTAACAGTCATCGGGTTAGG 57.533 45.455 0.00 0.00 32.37 2.69
30 31 6.204108 ACAAAACTTAACAGTCATCGGGTTAG 59.796 38.462 0.00 0.00 30.45 2.34
31 32 6.056884 ACAAAACTTAACAGTCATCGGGTTA 58.943 36.000 0.00 0.00 30.45 2.85
32 33 4.885325 ACAAAACTTAACAGTCATCGGGTT 59.115 37.500 0.00 0.00 30.45 4.11
33 34 4.457466 ACAAAACTTAACAGTCATCGGGT 58.543 39.130 0.00 0.00 30.45 5.28
34 35 5.212194 CAACAAAACTTAACAGTCATCGGG 58.788 41.667 0.00 0.00 30.45 5.14
35 36 5.816919 ACAACAAAACTTAACAGTCATCGG 58.183 37.500 0.00 0.00 30.45 4.18
36 37 8.730427 GTTAACAACAAAACTTAACAGTCATCG 58.270 33.333 0.00 0.00 32.75 3.84
37 38 9.562583 TGTTAACAACAAAACTTAACAGTCATC 57.437 29.630 5.64 0.00 38.72 2.92
38 39 9.349145 GTGTTAACAACAAAACTTAACAGTCAT 57.651 29.630 10.51 0.00 44.16 3.06
39 40 8.569641 AGTGTTAACAACAAAACTTAACAGTCA 58.430 29.630 10.51 0.00 44.16 3.41
40 41 8.846607 CAGTGTTAACAACAAAACTTAACAGTC 58.153 33.333 10.51 0.00 44.16 3.51
41 42 8.569641 TCAGTGTTAACAACAAAACTTAACAGT 58.430 29.630 10.51 3.95 44.16 3.55
42 43 8.958175 TCAGTGTTAACAACAAAACTTAACAG 57.042 30.769 10.51 0.00 44.16 3.16
70 71 9.797556 GCATTTGATTGCATACATGTATATGAT 57.202 29.630 17.86 11.36 42.31 2.45
71 72 8.245491 GGCATTTGATTGCATACATGTATATGA 58.755 33.333 17.86 7.26 44.59 2.15
72 73 7.219344 CGGCATTTGATTGCATACATGTATATG 59.781 37.037 17.86 15.08 44.59 1.78
73 74 7.121020 TCGGCATTTGATTGCATACATGTATAT 59.879 33.333 17.86 8.54 44.59 0.86
74 75 6.429385 TCGGCATTTGATTGCATACATGTATA 59.571 34.615 17.86 3.69 44.59 1.47
75 76 5.241285 TCGGCATTTGATTGCATACATGTAT 59.759 36.000 12.75 12.75 44.59 2.29
76 77 4.578105 TCGGCATTTGATTGCATACATGTA 59.422 37.500 8.27 8.27 44.59 2.29
77 78 3.380954 TCGGCATTTGATTGCATACATGT 59.619 39.130 2.69 2.69 44.59 3.21
78 79 3.967401 TCGGCATTTGATTGCATACATG 58.033 40.909 0.00 0.00 44.59 3.21
79 80 3.633525 ACTCGGCATTTGATTGCATACAT 59.366 39.130 0.00 0.00 44.59 2.29
80 81 3.016031 ACTCGGCATTTGATTGCATACA 58.984 40.909 0.00 0.00 44.59 2.29
81 82 3.698029 ACTCGGCATTTGATTGCATAC 57.302 42.857 0.00 0.00 44.59 2.39
82 83 5.826601 TTTACTCGGCATTTGATTGCATA 57.173 34.783 0.00 0.00 44.59 3.14
83 84 4.717233 TTTACTCGGCATTTGATTGCAT 57.283 36.364 0.00 0.00 44.59 3.96
84 85 4.511617 TTTTACTCGGCATTTGATTGCA 57.488 36.364 0.00 0.00 44.59 4.08
85 86 6.242829 CAATTTTTACTCGGCATTTGATTGC 58.757 36.000 0.00 0.00 42.01 3.56
86 87 6.128607 TGCAATTTTTACTCGGCATTTGATTG 60.129 34.615 0.00 0.00 0.00 2.67
87 88 5.931146 TGCAATTTTTACTCGGCATTTGATT 59.069 32.000 0.00 0.00 0.00 2.57
88 89 5.477510 TGCAATTTTTACTCGGCATTTGAT 58.522 33.333 0.00 0.00 0.00 2.57
89 90 4.876125 TGCAATTTTTACTCGGCATTTGA 58.124 34.783 0.00 0.00 0.00 2.69
90 91 5.577945 AGATGCAATTTTTACTCGGCATTTG 59.422 36.000 0.00 0.00 41.58 2.32
91 92 5.723295 AGATGCAATTTTTACTCGGCATTT 58.277 33.333 0.00 0.00 41.58 2.32
92 93 5.329035 AGATGCAATTTTTACTCGGCATT 57.671 34.783 0.00 0.00 41.58 3.56
93 94 4.989279 AGATGCAATTTTTACTCGGCAT 57.011 36.364 0.00 0.00 43.93 4.40
94 95 4.782019 AAGATGCAATTTTTACTCGGCA 57.218 36.364 0.00 0.00 35.54 5.69
95 96 6.972328 TCATTAAGATGCAATTTTTACTCGGC 59.028 34.615 0.00 0.00 33.14 5.54
96 97 7.967854 TGTCATTAAGATGCAATTTTTACTCGG 59.032 33.333 0.00 0.00 33.14 4.63
97 98 8.894409 TGTCATTAAGATGCAATTTTTACTCG 57.106 30.769 0.00 0.00 33.14 4.18
102 103 8.567104 GGGTTTTGTCATTAAGATGCAATTTTT 58.433 29.630 0.00 0.00 32.95 1.94
103 104 7.174772 GGGGTTTTGTCATTAAGATGCAATTTT 59.825 33.333 0.00 0.00 32.95 1.82
104 105 6.654582 GGGGTTTTGTCATTAAGATGCAATTT 59.345 34.615 0.00 0.00 32.95 1.82
105 106 6.172630 GGGGTTTTGTCATTAAGATGCAATT 58.827 36.000 0.00 0.00 32.95 2.32
106 107 5.248020 TGGGGTTTTGTCATTAAGATGCAAT 59.752 36.000 0.00 0.00 32.95 3.56
107 108 4.590647 TGGGGTTTTGTCATTAAGATGCAA 59.409 37.500 0.00 0.00 33.14 4.08
108 109 4.155709 TGGGGTTTTGTCATTAAGATGCA 58.844 39.130 0.00 0.00 33.14 3.96
109 110 4.799564 TGGGGTTTTGTCATTAAGATGC 57.200 40.909 0.00 0.00 33.14 3.91
110 111 7.835822 TGTATTGGGGTTTTGTCATTAAGATG 58.164 34.615 0.00 0.00 34.46 2.90
111 112 7.893302 TCTGTATTGGGGTTTTGTCATTAAGAT 59.107 33.333 0.00 0.00 0.00 2.40
112 113 7.175990 GTCTGTATTGGGGTTTTGTCATTAAGA 59.824 37.037 0.00 0.00 0.00 2.10
113 114 7.040062 TGTCTGTATTGGGGTTTTGTCATTAAG 60.040 37.037 0.00 0.00 0.00 1.85
114 115 6.778069 TGTCTGTATTGGGGTTTTGTCATTAA 59.222 34.615 0.00 0.00 0.00 1.40
115 116 6.307776 TGTCTGTATTGGGGTTTTGTCATTA 58.692 36.000 0.00 0.00 0.00 1.90
116 117 5.144100 TGTCTGTATTGGGGTTTTGTCATT 58.856 37.500 0.00 0.00 0.00 2.57
117 118 4.735369 TGTCTGTATTGGGGTTTTGTCAT 58.265 39.130 0.00 0.00 0.00 3.06
118 119 4.171878 TGTCTGTATTGGGGTTTTGTCA 57.828 40.909 0.00 0.00 0.00 3.58
119 120 4.261867 GGTTGTCTGTATTGGGGTTTTGTC 60.262 45.833 0.00 0.00 0.00 3.18
120 121 3.639561 GGTTGTCTGTATTGGGGTTTTGT 59.360 43.478 0.00 0.00 0.00 2.83
121 122 3.639094 TGGTTGTCTGTATTGGGGTTTTG 59.361 43.478 0.00 0.00 0.00 2.44
122 123 3.917300 TGGTTGTCTGTATTGGGGTTTT 58.083 40.909 0.00 0.00 0.00 2.43
123 124 3.603965 TGGTTGTCTGTATTGGGGTTT 57.396 42.857 0.00 0.00 0.00 3.27
124 125 3.603965 TTGGTTGTCTGTATTGGGGTT 57.396 42.857 0.00 0.00 0.00 4.11
125 126 3.075283 TGATTGGTTGTCTGTATTGGGGT 59.925 43.478 0.00 0.00 0.00 4.95
126 127 3.696045 TGATTGGTTGTCTGTATTGGGG 58.304 45.455 0.00 0.00 0.00 4.96
127 128 4.766891 AGTTGATTGGTTGTCTGTATTGGG 59.233 41.667 0.00 0.00 0.00 4.12
128 129 5.964958 AGTTGATTGGTTGTCTGTATTGG 57.035 39.130 0.00 0.00 0.00 3.16
129 130 7.387673 TGACTAGTTGATTGGTTGTCTGTATTG 59.612 37.037 0.00 0.00 0.00 1.90
130 131 7.450074 TGACTAGTTGATTGGTTGTCTGTATT 58.550 34.615 0.00 0.00 0.00 1.89
131 132 7.004555 TGACTAGTTGATTGGTTGTCTGTAT 57.995 36.000 0.00 0.00 0.00 2.29
132 133 6.413783 TGACTAGTTGATTGGTTGTCTGTA 57.586 37.500 0.00 0.00 0.00 2.74
133 134 5.290493 TGACTAGTTGATTGGTTGTCTGT 57.710 39.130 0.00 0.00 0.00 3.41
134 135 6.169094 AGATGACTAGTTGATTGGTTGTCTG 58.831 40.000 0.00 0.00 0.00 3.51
135 136 6.365970 AGATGACTAGTTGATTGGTTGTCT 57.634 37.500 0.00 0.00 0.00 3.41
136 137 7.766278 ACATAGATGACTAGTTGATTGGTTGTC 59.234 37.037 0.00 0.00 31.78 3.18
137 138 7.624549 ACATAGATGACTAGTTGATTGGTTGT 58.375 34.615 0.00 0.00 31.78 3.32
138 139 8.498054 AACATAGATGACTAGTTGATTGGTTG 57.502 34.615 0.00 0.00 31.78 3.77
139 140 9.520515 AAAACATAGATGACTAGTTGATTGGTT 57.479 29.630 0.00 0.00 31.78 3.67
140 141 9.520515 AAAAACATAGATGACTAGTTGATTGGT 57.479 29.630 0.00 0.00 31.78 3.67
141 142 9.778993 CAAAAACATAGATGACTAGTTGATTGG 57.221 33.333 0.00 0.00 31.78 3.16
144 145 9.167311 GGTCAAAAACATAGATGACTAGTTGAT 57.833 33.333 0.00 0.00 41.42 2.57
145 146 7.606456 GGGTCAAAAACATAGATGACTAGTTGA 59.394 37.037 0.00 0.00 41.42 3.18
146 147 7.607991 AGGGTCAAAAACATAGATGACTAGTTG 59.392 37.037 0.00 0.00 41.42 3.16
147 148 7.690256 AGGGTCAAAAACATAGATGACTAGTT 58.310 34.615 0.00 0.00 41.42 2.24
148 149 7.259088 AGGGTCAAAAACATAGATGACTAGT 57.741 36.000 0.00 0.00 41.42 2.57
149 150 9.838339 AATAGGGTCAAAAACATAGATGACTAG 57.162 33.333 4.94 0.00 41.42 2.57
151 152 9.533831 AAAATAGGGTCAAAAACATAGATGACT 57.466 29.630 4.94 0.00 41.42 3.41
154 155 8.872845 GCAAAAATAGGGTCAAAAACATAGATG 58.127 33.333 0.00 0.00 0.00 2.90
155 156 8.815912 AGCAAAAATAGGGTCAAAAACATAGAT 58.184 29.630 0.00 0.00 0.00 1.98
156 157 8.189119 AGCAAAAATAGGGTCAAAAACATAGA 57.811 30.769 0.00 0.00 0.00 1.98
157 158 8.831715 AAGCAAAAATAGGGTCAAAAACATAG 57.168 30.769 0.00 0.00 0.00 2.23
159 160 9.791801 AATAAGCAAAAATAGGGTCAAAAACAT 57.208 25.926 0.00 0.00 0.00 2.71
160 161 9.267084 GAATAAGCAAAAATAGGGTCAAAAACA 57.733 29.630 0.00 0.00 0.00 2.83
161 162 8.432359 CGAATAAGCAAAAATAGGGTCAAAAAC 58.568 33.333 0.00 0.00 0.00 2.43
162 163 8.361139 TCGAATAAGCAAAAATAGGGTCAAAAA 58.639 29.630 0.00 0.00 0.00 1.94
163 164 7.887381 TCGAATAAGCAAAAATAGGGTCAAAA 58.113 30.769 0.00 0.00 0.00 2.44
164 165 7.455641 TCGAATAAGCAAAAATAGGGTCAAA 57.544 32.000 0.00 0.00 0.00 2.69
165 166 6.404293 GCTCGAATAAGCAAAAATAGGGTCAA 60.404 38.462 0.00 0.00 42.05 3.18
166 167 5.065988 GCTCGAATAAGCAAAAATAGGGTCA 59.934 40.000 0.00 0.00 42.05 4.02
167 168 5.505819 GGCTCGAATAAGCAAAAATAGGGTC 60.506 44.000 0.00 0.00 44.35 4.46
168 169 4.338400 GGCTCGAATAAGCAAAAATAGGGT 59.662 41.667 0.00 0.00 44.35 4.34
169 170 4.554723 CGGCTCGAATAAGCAAAAATAGGG 60.555 45.833 0.00 0.00 44.35 3.53
170 171 4.035208 ACGGCTCGAATAAGCAAAAATAGG 59.965 41.667 1.50 0.00 44.35 2.57
171 172 4.963953 CACGGCTCGAATAAGCAAAAATAG 59.036 41.667 1.50 0.00 44.35 1.73
172 173 4.729458 GCACGGCTCGAATAAGCAAAAATA 60.729 41.667 1.50 0.00 44.35 1.40
173 174 3.758300 CACGGCTCGAATAAGCAAAAAT 58.242 40.909 1.50 0.00 44.35 1.82
174 175 2.667171 GCACGGCTCGAATAAGCAAAAA 60.667 45.455 1.50 0.00 44.35 1.94
175 176 1.135803 GCACGGCTCGAATAAGCAAAA 60.136 47.619 1.50 0.00 44.35 2.44
176 177 0.446222 GCACGGCTCGAATAAGCAAA 59.554 50.000 1.50 0.00 44.35 3.68
177 178 0.391130 AGCACGGCTCGAATAAGCAA 60.391 50.000 1.50 0.00 44.35 3.91
178 179 0.806102 GAGCACGGCTCGAATAAGCA 60.806 55.000 9.63 0.00 45.85 3.91
179 180 1.927931 GAGCACGGCTCGAATAAGC 59.072 57.895 9.63 0.00 45.85 3.09
190 191 3.315142 TTAGCCAGGCTGAGCACGG 62.315 63.158 25.59 6.91 40.10 4.94
191 192 1.812922 CTTAGCCAGGCTGAGCACG 60.813 63.158 25.59 0.00 40.10 5.34
192 193 0.461693 CTCTTAGCCAGGCTGAGCAC 60.462 60.000 25.54 9.08 41.20 4.40
193 194 1.620739 CCTCTTAGCCAGGCTGAGCA 61.621 60.000 25.54 14.62 41.20 4.26
194 195 1.145819 CCTCTTAGCCAGGCTGAGC 59.854 63.158 25.54 17.37 41.20 4.26
195 196 1.694133 CCCCTCTTAGCCAGGCTGAG 61.694 65.000 24.61 24.61 42.50 3.35
196 197 1.690633 CCCCTCTTAGCCAGGCTGA 60.691 63.158 25.59 15.76 40.10 4.26
197 198 1.690633 TCCCCTCTTAGCCAGGCTG 60.691 63.158 25.59 7.75 40.10 4.85
198 199 1.383803 CTCCCCTCTTAGCCAGGCT 60.384 63.158 20.63 20.63 43.41 4.58
199 200 3.113514 GCTCCCCTCTTAGCCAGGC 62.114 68.421 1.84 1.84 32.40 4.85
200 201 1.274703 TTGCTCCCCTCTTAGCCAGG 61.275 60.000 0.00 0.00 37.97 4.45
201 202 0.842635 ATTGCTCCCCTCTTAGCCAG 59.157 55.000 0.00 0.00 37.97 4.85
202 203 0.548031 CATTGCTCCCCTCTTAGCCA 59.452 55.000 0.00 0.00 37.97 4.75
203 204 0.839946 TCATTGCTCCCCTCTTAGCC 59.160 55.000 0.00 0.00 37.97 3.93
204 205 2.717639 TTCATTGCTCCCCTCTTAGC 57.282 50.000 0.00 0.00 39.25 3.09
205 206 2.948315 GCTTTCATTGCTCCCCTCTTAG 59.052 50.000 0.00 0.00 0.00 2.18
206 207 2.308570 TGCTTTCATTGCTCCCCTCTTA 59.691 45.455 0.00 0.00 0.00 2.10
207 208 1.076024 TGCTTTCATTGCTCCCCTCTT 59.924 47.619 0.00 0.00 0.00 2.85
208 209 0.700564 TGCTTTCATTGCTCCCCTCT 59.299 50.000 0.00 0.00 0.00 3.69
209 210 1.203287 GTTGCTTTCATTGCTCCCCTC 59.797 52.381 0.00 0.00 0.00 4.30
210 211 1.260544 GTTGCTTTCATTGCTCCCCT 58.739 50.000 0.00 0.00 0.00 4.79
211 212 0.247460 GGTTGCTTTCATTGCTCCCC 59.753 55.000 0.00 0.00 0.00 4.81
212 213 0.968405 TGGTTGCTTTCATTGCTCCC 59.032 50.000 0.00 0.00 0.00 4.30
213 214 2.802247 GTTTGGTTGCTTTCATTGCTCC 59.198 45.455 0.00 0.00 0.00 4.70
214 215 3.245990 GTGTTTGGTTGCTTTCATTGCTC 59.754 43.478 0.00 0.00 0.00 4.26
215 216 3.197265 GTGTTTGGTTGCTTTCATTGCT 58.803 40.909 0.00 0.00 0.00 3.91
216 217 2.033832 CGTGTTTGGTTGCTTTCATTGC 60.034 45.455 0.00 0.00 0.00 3.56
217 218 2.033832 GCGTGTTTGGTTGCTTTCATTG 60.034 45.455 0.00 0.00 0.00 2.82
218 219 2.200899 GCGTGTTTGGTTGCTTTCATT 58.799 42.857 0.00 0.00 0.00 2.57
219 220 1.537990 GGCGTGTTTGGTTGCTTTCAT 60.538 47.619 0.00 0.00 0.00 2.57
220 221 0.179124 GGCGTGTTTGGTTGCTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
221 222 0.874175 GGGCGTGTTTGGTTGCTTTC 60.874 55.000 0.00 0.00 0.00 2.62
222 223 1.142965 GGGCGTGTTTGGTTGCTTT 59.857 52.632 0.00 0.00 0.00 3.51
223 224 1.756561 AGGGCGTGTTTGGTTGCTT 60.757 52.632 0.00 0.00 0.00 3.91
224 225 2.123897 AGGGCGTGTTTGGTTGCT 60.124 55.556 0.00 0.00 0.00 3.91
225 226 2.027460 CAGGGCGTGTTTGGTTGC 59.973 61.111 0.00 0.00 0.00 4.17
226 227 2.727544 CCAGGGCGTGTTTGGTTG 59.272 61.111 6.43 0.00 0.00 3.77
227 228 2.520741 CCCAGGGCGTGTTTGGTT 60.521 61.111 6.43 0.00 0.00 3.67
228 229 3.816090 ACCCAGGGCGTGTTTGGT 61.816 61.111 4.91 3.72 0.00 3.67
229 230 3.294493 CACCCAGGGCGTGTTTGG 61.294 66.667 4.91 3.08 0.00 3.28
230 231 3.977244 GCACCCAGGGCGTGTTTG 61.977 66.667 4.91 0.00 33.61 2.93
231 232 2.419011 TATGCACCCAGGGCGTGTTT 62.419 55.000 4.91 0.00 33.61 2.83
232 233 2.901281 TATGCACCCAGGGCGTGTT 61.901 57.895 4.91 0.00 33.61 3.32
233 234 3.326578 TATGCACCCAGGGCGTGT 61.327 61.111 4.91 0.00 33.61 4.49
234 235 2.824041 GTATGCACCCAGGGCGTG 60.824 66.667 4.91 0.00 0.00 5.34
235 236 4.109675 GGTATGCACCCAGGGCGT 62.110 66.667 4.91 0.00 39.11 5.68
243 244 1.890174 GTTTGGCCAGGTATGCACC 59.110 57.895 5.11 0.00 46.19 5.01
244 245 1.506262 CGTTTGGCCAGGTATGCAC 59.494 57.895 5.11 0.00 0.00 4.57
245 246 1.677300 CCGTTTGGCCAGGTATGCA 60.677 57.895 5.11 0.00 0.00 3.96
246 247 2.414785 CCCGTTTGGCCAGGTATGC 61.415 63.158 5.11 0.00 0.00 3.14
247 248 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
256 257 3.361977 CAAGACCGGCCCGTTTGG 61.362 66.667 0.00 0.00 37.09 3.28
257 258 2.593436 ACAAGACCGGCCCGTTTG 60.593 61.111 0.00 6.56 0.00 2.93
258 259 2.281276 GACAAGACCGGCCCGTTT 60.281 61.111 0.00 0.00 0.00 3.60
259 260 4.675029 CGACAAGACCGGCCCGTT 62.675 66.667 0.00 0.00 0.00 4.44
265 266 4.760047 CCAGCCCGACAAGACCGG 62.760 72.222 0.00 0.00 46.10 5.28
267 268 4.329545 TGCCAGCCCGACAAGACC 62.330 66.667 0.00 0.00 0.00 3.85
268 269 3.050275 GTGCCAGCCCGACAAGAC 61.050 66.667 0.00 0.00 0.00 3.01
269 270 4.680237 CGTGCCAGCCCGACAAGA 62.680 66.667 0.00 0.00 0.00 3.02
270 271 2.572095 TATCGTGCCAGCCCGACAAG 62.572 60.000 0.00 0.00 35.69 3.16
271 272 2.572095 CTATCGTGCCAGCCCGACAA 62.572 60.000 0.00 0.00 35.69 3.18
272 273 3.071837 TATCGTGCCAGCCCGACA 61.072 61.111 0.00 0.00 35.69 4.35
273 274 2.279517 CTATCGTGCCAGCCCGAC 60.280 66.667 0.00 0.00 35.69 4.79
274 275 4.221422 GCTATCGTGCCAGCCCGA 62.221 66.667 0.00 0.00 37.51 5.14
320 321 1.006571 CCACTAAGCCACGTGTCGT 60.007 57.895 15.65 1.78 42.36 4.34
321 322 1.736645 CCCACTAAGCCACGTGTCG 60.737 63.158 15.65 0.51 0.00 4.35
322 323 2.033194 GCCCACTAAGCCACGTGTC 61.033 63.158 15.65 0.10 0.00 3.67
323 324 2.032071 GCCCACTAAGCCACGTGT 59.968 61.111 15.65 0.00 0.00 4.49
378 379 3.788766 GCTAGTTGTGCCGTGCCG 61.789 66.667 0.00 0.00 0.00 5.69
379 380 3.788766 CGCTAGTTGTGCCGTGCC 61.789 66.667 0.00 0.00 0.00 5.01
380 381 4.445545 GCGCTAGTTGTGCCGTGC 62.446 66.667 0.00 0.00 45.73 5.34
386 387 2.772189 GCTGTCGCGCTAGTTGTG 59.228 61.111 5.56 0.00 0.00 3.33
398 399 0.524862 TTTAGACGACCCTCGCTGTC 59.475 55.000 0.00 0.00 45.12 3.51
399 400 0.963962 TTTTAGACGACCCTCGCTGT 59.036 50.000 0.00 0.00 45.12 4.40
400 401 2.074547 TTTTTAGACGACCCTCGCTG 57.925 50.000 0.00 0.00 45.12 5.18
416 417 6.325919 TCAACAATAGCTCGATTGGTTTTT 57.674 33.333 12.68 0.00 40.50 1.94
417 418 5.957842 TCAACAATAGCTCGATTGGTTTT 57.042 34.783 12.68 0.00 40.50 2.43
418 419 6.515272 AATCAACAATAGCTCGATTGGTTT 57.485 33.333 12.68 0.00 40.50 3.27
419 420 6.071952 ACAAATCAACAATAGCTCGATTGGTT 60.072 34.615 12.68 3.98 40.50 3.67
420 421 5.415701 ACAAATCAACAATAGCTCGATTGGT 59.584 36.000 12.68 4.27 40.50 3.67
421 422 5.740569 CACAAATCAACAATAGCTCGATTGG 59.259 40.000 12.68 3.86 40.50 3.16
422 423 5.228635 GCACAAATCAACAATAGCTCGATTG 59.771 40.000 7.53 7.53 41.69 2.67
423 424 5.124457 AGCACAAATCAACAATAGCTCGATT 59.876 36.000 0.00 0.00 0.00 3.34
424 425 4.637534 AGCACAAATCAACAATAGCTCGAT 59.362 37.500 0.00 0.00 0.00 3.59
425 426 4.002982 AGCACAAATCAACAATAGCTCGA 58.997 39.130 0.00 0.00 0.00 4.04
426 427 4.346734 AGCACAAATCAACAATAGCTCG 57.653 40.909 0.00 0.00 0.00 5.03
427 428 6.253746 CAGTAGCACAAATCAACAATAGCTC 58.746 40.000 0.00 0.00 32.70 4.09
428 429 5.392380 GCAGTAGCACAAATCAACAATAGCT 60.392 40.000 0.00 0.00 41.58 3.32
429 430 4.795278 GCAGTAGCACAAATCAACAATAGC 59.205 41.667 0.00 0.00 41.58 2.97
430 431 5.124457 AGGCAGTAGCACAAATCAACAATAG 59.876 40.000 0.00 0.00 44.61 1.73
431 432 5.009631 AGGCAGTAGCACAAATCAACAATA 58.990 37.500 0.00 0.00 44.61 1.90
432 433 3.828451 AGGCAGTAGCACAAATCAACAAT 59.172 39.130 0.00 0.00 44.61 2.71
433 434 3.221771 AGGCAGTAGCACAAATCAACAA 58.778 40.909 0.00 0.00 44.61 2.83
434 435 2.862541 AGGCAGTAGCACAAATCAACA 58.137 42.857 0.00 0.00 44.61 3.33
435 436 4.003648 AGTAGGCAGTAGCACAAATCAAC 58.996 43.478 0.00 0.00 44.61 3.18
436 437 4.286297 AGTAGGCAGTAGCACAAATCAA 57.714 40.909 0.00 0.00 44.61 2.57
437 438 3.981071 AGTAGGCAGTAGCACAAATCA 57.019 42.857 0.00 0.00 44.61 2.57
438 439 3.375299 CCAAGTAGGCAGTAGCACAAATC 59.625 47.826 0.00 0.00 44.61 2.17
439 440 3.347216 CCAAGTAGGCAGTAGCACAAAT 58.653 45.455 0.00 0.00 44.61 2.32
440 441 2.552155 CCCAAGTAGGCAGTAGCACAAA 60.552 50.000 0.00 0.00 44.61 2.83
441 442 1.003118 CCCAAGTAGGCAGTAGCACAA 59.997 52.381 0.00 0.00 44.61 3.33
442 443 0.613260 CCCAAGTAGGCAGTAGCACA 59.387 55.000 0.00 0.00 44.61 4.57
443 444 0.107654 CCCCAAGTAGGCAGTAGCAC 60.108 60.000 0.00 0.00 44.61 4.40
444 445 1.271840 CCCCCAAGTAGGCAGTAGCA 61.272 60.000 0.00 0.00 44.61 3.49
445 446 1.527370 CCCCCAAGTAGGCAGTAGC 59.473 63.158 0.00 0.00 41.10 3.58
471 472 4.279808 GTCGAGTCGATCCATGGAACAAG 61.280 52.174 20.67 10.44 39.59 3.16
472 473 2.416836 GTCGAGTCGATCCATGGAACAA 60.417 50.000 20.67 0.00 39.59 2.83
473 474 1.134367 GTCGAGTCGATCCATGGAACA 59.866 52.381 20.67 2.14 40.30 3.18
474 475 1.405821 AGTCGAGTCGATCCATGGAAC 59.594 52.381 20.67 15.91 38.42 3.62
475 476 1.405463 CAGTCGAGTCGATCCATGGAA 59.595 52.381 20.67 0.00 38.42 3.53
476 477 1.025041 CAGTCGAGTCGATCCATGGA 58.975 55.000 18.88 18.88 38.42 3.41
477 478 1.025041 TCAGTCGAGTCGATCCATGG 58.975 55.000 19.75 4.97 38.42 3.66
478 479 2.098280 ACTTCAGTCGAGTCGATCCATG 59.902 50.000 19.75 14.68 38.42 3.66
479 480 2.098280 CACTTCAGTCGAGTCGATCCAT 59.902 50.000 19.75 2.60 38.42 3.41
480 481 1.468914 CACTTCAGTCGAGTCGATCCA 59.531 52.381 19.75 2.23 38.42 3.41
481 482 1.202200 CCACTTCAGTCGAGTCGATCC 60.202 57.143 19.75 6.79 38.42 3.36
482 483 1.202200 CCCACTTCAGTCGAGTCGATC 60.202 57.143 19.75 12.26 38.42 3.69
483 484 0.811915 CCCACTTCAGTCGAGTCGAT 59.188 55.000 19.75 5.10 38.42 3.59
484 485 1.863662 GCCCACTTCAGTCGAGTCGA 61.864 60.000 12.09 12.09 0.00 4.20
485 486 1.444553 GCCCACTTCAGTCGAGTCG 60.445 63.158 6.09 6.09 0.00 4.18
486 487 1.079750 GGCCCACTTCAGTCGAGTC 60.080 63.158 0.00 0.00 0.00 3.36
487 488 2.932234 CGGCCCACTTCAGTCGAGT 61.932 63.158 0.00 0.00 0.00 4.18
488 489 2.125912 CGGCCCACTTCAGTCGAG 60.126 66.667 0.00 0.00 0.00 4.04
489 490 2.599281 TCGGCCCACTTCAGTCGA 60.599 61.111 0.00 0.00 0.00 4.20
490 491 2.432628 GTCGGCCCACTTCAGTCG 60.433 66.667 0.00 0.00 0.00 4.18
491 492 1.070786 TTGTCGGCCCACTTCAGTC 59.929 57.895 1.09 0.00 0.00 3.51
492 493 1.227853 GTTGTCGGCCCACTTCAGT 60.228 57.895 1.09 0.00 0.00 3.41
493 494 0.320374 TAGTTGTCGGCCCACTTCAG 59.680 55.000 1.09 0.00 0.00 3.02
494 495 0.759959 TTAGTTGTCGGCCCACTTCA 59.240 50.000 1.09 0.00 0.00 3.02
495 496 1.737793 CATTAGTTGTCGGCCCACTTC 59.262 52.381 1.09 0.00 0.00 3.01
496 497 1.073284 ACATTAGTTGTCGGCCCACTT 59.927 47.619 1.09 0.00 30.89 3.16
497 498 0.690762 ACATTAGTTGTCGGCCCACT 59.309 50.000 1.09 0.00 30.89 4.00
498 499 0.802494 CACATTAGTTGTCGGCCCAC 59.198 55.000 0.00 0.00 36.00 4.61
499 500 0.958382 GCACATTAGTTGTCGGCCCA 60.958 55.000 0.00 0.00 36.00 5.36
500 501 0.676782 AGCACATTAGTTGTCGGCCC 60.677 55.000 0.00 0.00 36.00 5.80
501 502 1.664151 GTAGCACATTAGTTGTCGGCC 59.336 52.381 0.00 0.00 36.00 6.13
502 503 2.348666 CAGTAGCACATTAGTTGTCGGC 59.651 50.000 0.00 0.00 36.00 5.54
503 504 2.348666 GCAGTAGCACATTAGTTGTCGG 59.651 50.000 0.00 0.00 41.58 4.79
504 505 2.348666 GGCAGTAGCACATTAGTTGTCG 59.651 50.000 0.00 0.00 44.61 4.35
505 506 3.600388 AGGCAGTAGCACATTAGTTGTC 58.400 45.455 0.00 0.00 44.61 3.18
506 507 3.703001 AGGCAGTAGCACATTAGTTGT 57.297 42.857 0.00 0.00 44.61 3.32
507 508 4.568359 CAGTAGGCAGTAGCACATTAGTTG 59.432 45.833 0.00 0.00 44.61 3.16
508 509 4.759782 CAGTAGGCAGTAGCACATTAGTT 58.240 43.478 0.00 0.00 44.61 2.24
509 510 3.430929 GCAGTAGGCAGTAGCACATTAGT 60.431 47.826 0.00 0.00 44.61 2.24
510 511 3.126831 GCAGTAGGCAGTAGCACATTAG 58.873 50.000 0.00 0.00 44.61 1.73
511 512 3.179443 GCAGTAGGCAGTAGCACATTA 57.821 47.619 0.00 0.00 44.61 1.90
512 513 2.029838 GCAGTAGGCAGTAGCACATT 57.970 50.000 0.00 0.00 44.61 2.71
513 514 3.768633 GCAGTAGGCAGTAGCACAT 57.231 52.632 0.00 0.00 44.61 3.21
523 524 1.766143 GCACACGCATAGCAGTAGGC 61.766 60.000 0.00 0.00 39.87 3.93
524 525 0.179100 AGCACACGCATAGCAGTAGG 60.179 55.000 0.00 0.00 42.27 3.18
525 526 2.223595 ACTAGCACACGCATAGCAGTAG 60.224 50.000 0.00 0.00 42.27 2.57
526 527 1.749063 ACTAGCACACGCATAGCAGTA 59.251 47.619 0.00 0.00 42.27 2.74
527 528 0.532573 ACTAGCACACGCATAGCAGT 59.467 50.000 0.00 0.00 42.27 4.40
528 529 0.926155 CACTAGCACACGCATAGCAG 59.074 55.000 0.00 0.00 42.27 4.24
529 530 0.530288 TCACTAGCACACGCATAGCA 59.470 50.000 0.00 0.00 42.27 3.49
530 531 1.640428 TTCACTAGCACACGCATAGC 58.360 50.000 0.00 0.00 42.27 2.97
531 532 4.864916 AATTTCACTAGCACACGCATAG 57.135 40.909 0.00 0.00 42.27 2.23
532 533 5.621197 AAAATTTCACTAGCACACGCATA 57.379 34.783 0.00 0.00 42.27 3.14
533 534 4.503741 AAAATTTCACTAGCACACGCAT 57.496 36.364 0.00 0.00 42.27 4.73
534 535 3.980646 AAAATTTCACTAGCACACGCA 57.019 38.095 0.00 0.00 42.27 5.24
535 536 6.741448 TTTAAAAATTTCACTAGCACACGC 57.259 33.333 0.00 0.00 38.99 5.34
557 558 1.399727 GCACACTAGCGCACGATTTTT 60.400 47.619 11.47 0.00 0.00 1.94
558 559 0.165944 GCACACTAGCGCACGATTTT 59.834 50.000 11.47 0.00 0.00 1.82
559 560 0.670546 AGCACACTAGCGCACGATTT 60.671 50.000 11.47 0.00 40.15 2.17
560 561 0.172578 TAGCACACTAGCGCACGATT 59.827 50.000 11.47 0.00 40.15 3.34
561 562 0.525668 GTAGCACACTAGCGCACGAT 60.526 55.000 11.47 0.00 40.15 3.73
562 563 1.154093 GTAGCACACTAGCGCACGA 60.154 57.895 11.47 0.00 40.15 4.35
563 564 0.098200 TAGTAGCACACTAGCGCACG 59.902 55.000 11.47 1.43 38.80 5.34
564 565 1.132643 AGTAGTAGCACACTAGCGCAC 59.867 52.381 11.47 0.00 40.48 5.34
565 566 1.460504 AGTAGTAGCACACTAGCGCA 58.539 50.000 11.47 0.00 40.48 6.09
566 567 2.599377 CGTAGTAGTAGCACACTAGCGC 60.599 54.545 0.00 0.00 40.48 5.92
567 568 2.606725 ACGTAGTAGTAGCACACTAGCG 59.393 50.000 0.00 6.87 41.94 4.26
581 582 2.414994 AGGCTCACTGCTACGTAGTA 57.585 50.000 22.98 18.10 40.17 1.82
582 583 1.202582 CAAGGCTCACTGCTACGTAGT 59.797 52.381 22.98 3.88 42.39 2.73
583 584 1.914634 CAAGGCTCACTGCTACGTAG 58.085 55.000 18.47 18.47 42.39 3.51
584 585 0.108804 GCAAGGCTCACTGCTACGTA 60.109 55.000 2.44 0.00 42.39 3.57
585 586 1.374758 GCAAGGCTCACTGCTACGT 60.375 57.895 2.44 0.00 42.39 3.57
586 587 1.357258 CTGCAAGGCTCACTGCTACG 61.357 60.000 10.70 0.00 42.39 3.51
587 588 0.321122 ACTGCAAGGCTCACTGCTAC 60.321 55.000 10.70 0.00 42.39 3.58
588 589 0.036952 GACTGCAAGGCTCACTGCTA 60.037 55.000 10.70 0.00 40.68 3.49
589 590 1.302351 GACTGCAAGGCTCACTGCT 60.302 57.895 10.70 0.00 40.68 4.24
590 591 3.261933 GACTGCAAGGCTCACTGC 58.738 61.111 2.70 2.70 40.68 4.40
602 603 4.077188 GCACGTCCGCAAGACTGC 62.077 66.667 10.38 10.38 43.91 4.40
603 604 2.029288 ATGCACGTCCGCAAGACTG 61.029 57.895 4.54 1.99 46.87 3.51
604 605 2.029288 CATGCACGTCCGCAAGACT 61.029 57.895 4.54 0.00 46.87 3.24
605 606 2.476051 CATGCACGTCCGCAAGAC 59.524 61.111 4.54 0.00 46.87 3.01
606 607 3.422303 GCATGCACGTCCGCAAGA 61.422 61.111 14.21 0.00 46.87 3.02
607 608 3.042842 ATGCATGCACGTCCGCAAG 62.043 57.895 25.37 1.73 46.87 4.01
608 609 3.055110 ATGCATGCACGTCCGCAA 61.055 55.556 25.37 0.00 46.87 4.85
626 627 2.543687 TAGCTGTCTCGTGCGAAGGC 62.544 60.000 0.00 0.00 40.52 4.35
627 628 0.524392 CTAGCTGTCTCGTGCGAAGG 60.524 60.000 0.00 0.00 0.00 3.46
628 629 1.136872 GCTAGCTGTCTCGTGCGAAG 61.137 60.000 7.70 0.00 0.00 3.79
629 630 1.154016 GCTAGCTGTCTCGTGCGAA 60.154 57.895 7.70 0.00 0.00 4.70
630 631 1.657751 ATGCTAGCTGTCTCGTGCGA 61.658 55.000 17.23 0.00 0.00 5.10
631 632 1.226802 ATGCTAGCTGTCTCGTGCG 60.227 57.895 17.23 0.00 0.00 5.34
632 633 1.760268 GCATGCTAGCTGTCTCGTGC 61.760 60.000 17.23 10.48 0.00 5.34
633 634 1.477826 CGCATGCTAGCTGTCTCGTG 61.478 60.000 17.13 4.73 0.00 4.35
634 635 1.226802 CGCATGCTAGCTGTCTCGT 60.227 57.895 17.13 0.00 0.00 4.18
635 636 2.584065 GCGCATGCTAGCTGTCTCG 61.584 63.158 17.13 12.64 38.39 4.04
636 637 2.584065 CGCGCATGCTAGCTGTCTC 61.584 63.158 17.13 1.72 39.65 3.36
637 638 2.563050 TTCGCGCATGCTAGCTGTCT 62.563 55.000 17.13 0.00 39.65 3.41
638 639 2.167219 TTCGCGCATGCTAGCTGTC 61.167 57.895 17.13 3.54 39.65 3.51
639 640 2.125552 TTCGCGCATGCTAGCTGT 60.126 55.556 17.13 1.42 39.65 4.40
640 641 2.322422 GTTCGCGCATGCTAGCTG 59.678 61.111 17.13 12.50 39.65 4.24
641 642 3.257561 CGTTCGCGCATGCTAGCT 61.258 61.111 17.13 0.00 39.65 3.32
642 643 3.254654 TCGTTCGCGCATGCTAGC 61.255 61.111 17.13 8.10 41.05 3.42
643 644 2.615618 GTCGTTCGCGCATGCTAG 59.384 61.111 17.13 9.53 41.05 3.42
644 645 3.244603 CGTCGTTCGCGCATGCTA 61.245 61.111 17.13 0.00 41.05 3.49
679 680 1.080093 TTTACGTGCGAGGAGGCAG 60.080 57.895 0.00 0.00 44.93 4.85
680 681 1.373748 GTTTACGTGCGAGGAGGCA 60.374 57.895 0.00 0.00 41.45 4.75
681 682 2.442188 CGTTTACGTGCGAGGAGGC 61.442 63.158 0.00 0.00 34.11 4.70
682 683 3.763319 CGTTTACGTGCGAGGAGG 58.237 61.111 0.00 0.00 34.11 4.30
692 693 1.422269 CCCGATTGGCACGTTTACG 59.578 57.895 0.00 0.00 46.33 3.18
702 703 2.895372 GCACGTAGGCCCGATTGG 60.895 66.667 8.49 0.00 37.09 3.16
716 717 1.586154 ATGGCTAAACGTGCTGGCAC 61.586 55.000 14.86 14.86 43.01 5.01
717 718 1.303236 ATGGCTAAACGTGCTGGCA 60.303 52.632 12.08 12.08 39.22 4.92
718 719 1.137404 CATGGCTAAACGTGCTGGC 59.863 57.895 0.00 0.00 0.00 4.85
719 720 1.656818 CCCATGGCTAAACGTGCTGG 61.657 60.000 6.09 0.00 0.00 4.85
720 721 1.802636 CCCATGGCTAAACGTGCTG 59.197 57.895 6.09 0.00 0.00 4.41
721 722 2.046285 GCCCATGGCTAAACGTGCT 61.046 57.895 6.09 0.00 46.69 4.40
722 723 2.489751 GCCCATGGCTAAACGTGC 59.510 61.111 6.09 0.00 46.69 5.34
779 780 1.226888 CTAAGTACTCGGGCCGTGC 60.227 63.158 27.32 11.45 0.00 5.34
780 781 1.226888 GCTAAGTACTCGGGCCGTG 60.227 63.158 27.32 26.06 0.00 4.94
781 782 2.768492 CGCTAAGTACTCGGGCCGT 61.768 63.158 27.32 10.46 0.00 5.68
782 783 2.025727 CGCTAAGTACTCGGGCCG 59.974 66.667 22.51 22.51 0.00 6.13
783 784 1.226888 CACGCTAAGTACTCGGGCC 60.227 63.158 0.00 0.00 0.00 5.80
784 785 1.877165 GCACGCTAAGTACTCGGGC 60.877 63.158 13.11 13.11 45.48 6.13
785 786 1.226888 GGCACGCTAAGTACTCGGG 60.227 63.158 0.00 0.00 0.00 5.14
786 787 0.525668 CAGGCACGCTAAGTACTCGG 60.526 60.000 0.00 0.00 0.00 4.63
787 788 1.140407 GCAGGCACGCTAAGTACTCG 61.140 60.000 0.00 0.00 0.00 4.18
788 789 0.806492 GGCAGGCACGCTAAGTACTC 60.806 60.000 0.00 0.00 0.00 2.59
789 790 1.218316 GGCAGGCACGCTAAGTACT 59.782 57.895 0.00 0.00 0.00 2.73
790 791 1.814169 GGGCAGGCACGCTAAGTAC 60.814 63.158 0.00 0.00 0.00 2.73
791 792 2.582436 GGGCAGGCACGCTAAGTA 59.418 61.111 0.00 0.00 0.00 2.24
792 793 4.760047 CGGGCAGGCACGCTAAGT 62.760 66.667 1.83 0.00 35.54 2.24
819 820 1.239296 GGGTTAAACGGGTCAGGCAC 61.239 60.000 0.00 0.00 0.00 5.01
820 821 1.073548 GGGTTAAACGGGTCAGGCA 59.926 57.895 0.00 0.00 0.00 4.75
821 822 0.958876 CTGGGTTAAACGGGTCAGGC 60.959 60.000 0.00 0.00 0.00 4.85
822 823 0.322187 CCTGGGTTAAACGGGTCAGG 60.322 60.000 0.00 0.00 36.28 3.86
823 824 0.958876 GCCTGGGTTAAACGGGTCAG 60.959 60.000 7.81 0.00 36.71 3.51
824 825 1.073548 GCCTGGGTTAAACGGGTCA 59.926 57.895 7.81 0.00 36.71 4.02
825 826 1.676635 GGCCTGGGTTAAACGGGTC 60.677 63.158 0.00 2.36 36.71 4.46
826 827 2.437449 GGCCTGGGTTAAACGGGT 59.563 61.111 0.00 0.00 36.71 5.28
827 828 2.748647 CGGCCTGGGTTAAACGGG 60.749 66.667 0.00 2.58 37.43 5.28
828 829 2.032987 ACGGCCTGGGTTAAACGG 59.967 61.111 0.00 0.00 0.00 4.44
829 830 2.973316 GCACGGCCTGGGTTAAACG 61.973 63.158 0.00 0.00 0.00 3.60
830 831 2.632544 GGCACGGCCTGGGTTAAAC 61.633 63.158 0.00 0.00 46.69 2.01
831 832 2.282603 GGCACGGCCTGGGTTAAA 60.283 61.111 0.00 0.00 46.69 1.52
861 862 3.451894 CTGACCAAATGGGCCGGC 61.452 66.667 21.18 21.18 44.80 6.13
862 863 2.755469 CCTGACCAAATGGGCCGG 60.755 66.667 2.09 1.48 44.80 6.13
863 864 1.184970 AAACCTGACCAAATGGGCCG 61.185 55.000 2.09 0.00 44.80 6.13
864 865 0.321346 CAAACCTGACCAAATGGGCC 59.679 55.000 2.09 0.00 44.80 5.80
865 866 0.320683 GCAAACCTGACCAAATGGGC 60.321 55.000 4.17 0.37 45.93 5.36
866 867 0.321346 GGCAAACCTGACCAAATGGG 59.679 55.000 4.17 0.00 44.81 4.00
867 868 3.912899 GGCAAACCTGACCAAATGG 57.087 52.632 0.00 0.00 42.17 3.16
878 879 1.456705 TGGTTCACCCAGGCAAACC 60.457 57.895 11.95 11.95 38.72 3.27
879 880 4.268720 TGGTTCACCCAGGCAAAC 57.731 55.556 0.00 0.00 38.72 2.93
889 890 0.898789 TCCGTCTCTCCCTGGTTCAC 60.899 60.000 0.00 0.00 0.00 3.18
1228 1229 2.047560 AGGCGCACCGGACTTTAC 60.048 61.111 9.46 0.00 42.76 2.01
1422 1423 0.310543 GTGGCATCTGCACGAACAAA 59.689 50.000 4.33 0.00 44.36 2.83
1537 1538 1.065418 CCAGCCCCTCGACATTTTAGT 60.065 52.381 0.00 0.00 0.00 2.24
1562 1563 3.538785 TATGTGTGCACGCCGGGTT 62.539 57.895 26.63 9.53 0.00 4.11
1629 1630 0.110486 TCTCACCCAACAAAGCCTCC 59.890 55.000 0.00 0.00 0.00 4.30
1837 1838 1.063972 CACACAACACCTTGGCACG 59.936 57.895 0.00 0.00 0.00 5.34
2031 4058 2.177394 TCGCTTGATGCACTTTACCA 57.823 45.000 0.00 0.00 43.06 3.25
2092 4119 5.805486 TCAGCGAGTTGAATGTAACAGTATC 59.195 40.000 0.00 0.00 33.02 2.24
2148 4175 2.509569 TCAAGCAACCGGAAAGCAATA 58.490 42.857 9.46 0.00 0.00 1.90
2661 4688 1.995376 TTTCTTCCTTCCTTGCACCC 58.005 50.000 0.00 0.00 0.00 4.61
3270 5301 7.785985 TCATAGTTGTACCCTAAGCCAAGTATA 59.214 37.037 0.00 0.00 33.72 1.47
3546 5577 1.070445 CCAACAAATTCAAGGCCAGCA 59.930 47.619 5.01 0.00 0.00 4.41
3611 5642 0.035056 CTGGACCCAGAACATGACCC 60.035 60.000 10.47 0.00 46.30 4.46
4131 7315 4.900635 TTCTGAAGGAACAAAAGAGTGC 57.099 40.909 0.00 0.00 0.00 4.40
4161 7347 8.703604 TGCTAGTTTGAATGAAGTACATACTC 57.296 34.615 0.00 0.00 38.38 2.59
4204 7390 5.779922 TCTACAGTCAATGTACCAGAACAC 58.220 41.667 0.00 0.00 43.66 3.32
4361 7547 7.275183 TGTTTCTGTAGATGATTGGGTAGATG 58.725 38.462 0.00 0.00 0.00 2.90
4421 7607 9.418045 CAAAGTTAACCAACAAAGAAAGAAGAA 57.582 29.630 0.88 0.00 37.10 2.52
4426 7612 7.520119 GGACAAAGTTAACCAACAAAGAAAG 57.480 36.000 0.88 0.00 37.10 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.