Multiple sequence alignment - TraesCS1A01G121100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G121100 chr1A 100.000 2808 0 0 3250 6057 133515831 133513024 0.000000e+00 5186.0
1 TraesCS1A01G121100 chr1A 100.000 2611 0 0 1 2611 133519080 133516470 0.000000e+00 4822.0
2 TraesCS1A01G121100 chr1A 83.470 732 79 31 1 706 395584196 395584911 1.420000e-180 643.0
3 TraesCS1A01G121100 chr1A 86.116 605 53 23 1676 2265 226901563 226900975 1.850000e-174 623.0
4 TraesCS1A01G121100 chr1A 86.807 523 52 8 3250 3771 133505442 133504936 8.810000e-158 568.0
5 TraesCS1A01G121100 chr1A 90.230 348 31 3 2265 2610 133506574 133506228 9.260000e-123 451.0
6 TraesCS1A01G121100 chr1A 90.351 342 23 9 2265 2600 281448125 281448462 2.000000e-119 440.0
7 TraesCS1A01G121100 chr1A 88.825 349 32 6 2265 2608 315102329 315101983 7.260000e-114 422.0
8 TraesCS1A01G121100 chr1A 96.522 230 7 1 1433 1661 379029891 379029662 4.430000e-101 379.0
9 TraesCS1A01G121100 chr1A 83.730 252 32 9 2024 2272 250680450 250680205 4.720000e-56 230.0
10 TraesCS1A01G121100 chr1A 96.296 54 2 0 1212 1265 155574941 155574888 8.360000e-14 89.8
11 TraesCS1A01G121100 chr1A 96.296 54 2 0 1212 1265 155582993 155582940 8.360000e-14 89.8
12 TraesCS1A01G121100 chr1A 93.220 59 4 0 1207 1265 51726969 51727027 3.010000e-13 87.9
13 TraesCS1A01G121100 chr1A 100.000 44 0 0 962 1005 133518162 133518119 1.400000e-11 82.4
14 TraesCS1A01G121100 chr1A 94.444 54 0 3 1210 1260 186505684 186505631 5.030000e-11 80.5
15 TraesCS1A01G121100 chr1A 87.500 56 3 4 1421 1474 222720772 222720719 1.820000e-05 62.1
16 TraesCS1A01G121100 chr7A 89.331 2662 235 30 3409 6057 214484702 214482077 0.000000e+00 3297.0
17 TraesCS1A01G121100 chr7A 86.522 2723 290 48 3356 6057 391961610 391958944 0.000000e+00 2924.0
18 TraesCS1A01G121100 chr7A 86.039 2686 310 49 3395 6057 515043230 515040587 0.000000e+00 2822.0
19 TraesCS1A01G121100 chr7A 86.121 2637 303 36 3439 6057 395778936 395776345 0.000000e+00 2784.0
20 TraesCS1A01G121100 chr7A 79.165 2395 383 87 3714 6057 418573145 418575474 0.000000e+00 1552.0
21 TraesCS1A01G121100 chr7A 83.409 1103 118 38 5004 6057 296443245 296444331 0.000000e+00 963.0
22 TraesCS1A01G121100 chr7A 86.737 852 91 19 5213 6057 448704076 448704912 0.000000e+00 928.0
23 TraesCS1A01G121100 chr7A 83.654 832 106 20 5244 6057 358357116 358356297 0.000000e+00 756.0
24 TraesCS1A01G121100 chr7A 93.598 453 24 5 10 460 369432938 369432489 0.000000e+00 671.0
25 TraesCS1A01G121100 chr7A 86.545 602 58 17 1676 2267 233704352 233704940 5.120000e-180 641.0
26 TraesCS1A01G121100 chr7A 86.134 613 51 19 1675 2264 233655961 233656562 1.110000e-176 630.0
27 TraesCS1A01G121100 chr7A 81.854 755 76 45 7 715 394888450 394887711 4.070000e-161 579.0
28 TraesCS1A01G121100 chr7A 91.935 310 24 1 654 962 577084950 577084641 3.350000e-117 433.0
29 TraesCS1A01G121100 chr7A 91.613 310 25 1 654 962 577093106 577092797 1.560000e-115 427.0
30 TraesCS1A01G121100 chr7A 97.391 230 5 1 1433 1661 203051405 203051634 2.050000e-104 390.0
31 TraesCS1A01G121100 chr7A 96.522 230 7 1 1433 1661 157317919 157318148 4.430000e-101 379.0
32 TraesCS1A01G121100 chr7A 95.217 230 10 1 1433 1661 157325771 157326000 4.460000e-96 363.0
33 TraesCS1A01G121100 chr7A 91.026 156 9 4 1182 1336 262909195 262909346 7.960000e-49 206.0
34 TraesCS1A01G121100 chr7A 90.071 141 11 1 1196 1336 71447323 71447460 4.820000e-41 180.0
35 TraesCS1A01G121100 chr7A 93.000 100 6 1 1033 1131 203649770 203649671 1.760000e-30 145.0
36 TraesCS1A01G121100 chr7A 92.000 100 7 1 1033 1131 203641768 203641669 8.190000e-29 139.0
37 TraesCS1A01G121100 chr7A 100.000 52 0 0 1212 1263 222059328 222059277 5.000000e-16 97.1
38 TraesCS1A01G121100 chr7A 100.000 28 0 0 1146 1173 280454846 280454873 1.100000e-02 52.8
39 TraesCS1A01G121100 chr3A 89.202 2630 239 27 3437 6057 407167905 407170498 0.000000e+00 3241.0
40 TraesCS1A01G121100 chr3A 88.682 2580 252 27 3488 6057 135585861 135583312 0.000000e+00 3110.0
41 TraesCS1A01G121100 chr3A 91.558 462 31 7 2 460 234013145 234013601 1.110000e-176 630.0
42 TraesCS1A01G121100 chr3A 85.065 616 61 19 1672 2264 201458261 201458868 3.120000e-167 599.0
43 TraesCS1A01G121100 chr3A 89.827 462 39 7 2 460 234038641 234039097 2.430000e-163 586.0
44 TraesCS1A01G121100 chr3A 87.146 459 46 8 2 454 316659591 316659140 5.420000e-140 508.0
45 TraesCS1A01G121100 chr3A 88.825 349 31 8 2265 2608 407167167 407167512 7.260000e-114 422.0
46 TraesCS1A01G121100 chr3A 87.421 318 30 7 653 962 263094048 263094363 2.080000e-94 357.0
47 TraesCS1A01G121100 chr3A 91.489 141 7 3 1196 1336 617335008 617335143 8.010000e-44 189.0
48 TraesCS1A01G121100 chr3A 81.008 258 29 11 2025 2277 424415390 424415148 2.880000e-43 187.0
49 TraesCS1A01G121100 chr3A 93.750 48 3 0 1406 1453 165843994 165844041 8.420000e-09 73.1
50 TraesCS1A01G121100 chr3A 91.667 48 4 0 1406 1453 165820428 165820475 3.920000e-07 67.6
51 TraesCS1A01G121100 chr4A 88.359 2706 247 35 3367 6057 442594382 442591730 0.000000e+00 3190.0
52 TraesCS1A01G121100 chr4A 88.690 2007 194 23 3439 5437 310441821 310439840 0.000000e+00 2418.0
53 TraesCS1A01G121100 chr4A 84.865 1077 111 30 5012 6057 242009721 242010776 0.000000e+00 1038.0
54 TraesCS1A01G121100 chr4A 82.109 749 78 38 2 706 685935050 685935786 1.880000e-164 590.0
55 TraesCS1A01G121100 chr4A 81.891 751 76 41 2 706 685855023 685855759 4.070000e-161 579.0
56 TraesCS1A01G121100 chr4A 90.286 350 28 5 2265 2610 44825008 44825355 2.570000e-123 453.0
57 TraesCS1A01G121100 chr4A 90.000 350 29 5 2265 2610 44709170 44709517 1.200000e-121 448.0
58 TraesCS1A01G121100 chr4A 89.459 351 31 5 2265 2610 44527269 44527618 7.210000e-119 438.0
59 TraesCS1A01G121100 chr4A 90.705 312 25 4 653 962 321529121 321528812 4.370000e-111 412.0
60 TraesCS1A01G121100 chr4A 98.261 230 3 1 1433 1661 157597362 157597133 9.460000e-108 401.0
61 TraesCS1A01G121100 chr4A 94.924 197 6 4 1468 1661 285265754 285265559 7.630000e-79 305.0
62 TraesCS1A01G121100 chr4A 87.736 106 11 2 1025 1129 411639030 411638926 8.240000e-24 122.0
63 TraesCS1A01G121100 chr4A 96.970 66 2 0 967 1032 321528850 321528785 1.780000e-20 111.0
64 TraesCS1A01G121100 chr4A 96.875 64 2 0 1207 1270 262445821 262445884 2.310000e-19 108.0
65 TraesCS1A01G121100 chr4A 81.884 138 10 11 1196 1333 70592525 70592647 1.070000e-17 102.0
66 TraesCS1A01G121100 chr4A 96.721 61 2 0 1207 1267 262453697 262453757 1.070000e-17 102.0
67 TraesCS1A01G121100 chr4A 94.444 54 3 0 1212 1265 355460283 355460230 3.890000e-12 84.2
68 TraesCS1A01G121100 chr4A 94.872 39 1 1 1083 1120 157597606 157597568 6.560000e-05 60.2
69 TraesCS1A01G121100 chr4A 92.683 41 2 1 1134 1174 383227629 383227590 2.360000e-04 58.4
70 TraesCS1A01G121100 chr6A 88.626 2620 239 42 3285 5886 259230654 259228076 0.000000e+00 3133.0
71 TraesCS1A01G121100 chr6A 91.169 1257 67 14 1024 2264 320896770 320897998 0.000000e+00 1666.0
72 TraesCS1A01G121100 chr6A 86.667 675 69 18 1591 2264 243177009 243176355 0.000000e+00 728.0
73 TraesCS1A01G121100 chr6A 85.595 597 56 19 1690 2267 250995693 250995108 3.120000e-167 599.0
74 TraesCS1A01G121100 chr6A 88.571 350 32 6 2265 2608 518086131 518085784 9.390000e-113 418.0
75 TraesCS1A01G121100 chr6A 89.181 342 26 8 2265 2599 361314309 361314646 3.380000e-112 416.0
76 TraesCS1A01G121100 chr6A 77.273 528 79 24 1774 2271 258827376 258826860 7.740000e-69 272.0
77 TraesCS1A01G121100 chr6A 95.775 71 3 0 962 1032 124056920 124056990 1.380000e-21 115.0
78 TraesCS1A01G121100 chr6A 94.366 71 4 0 962 1032 289419057 289418987 6.420000e-20 110.0
79 TraesCS1A01G121100 chr6A 95.455 66 3 0 967 1032 289453679 289453614 8.300000e-19 106.0
80 TraesCS1A01G121100 chr6A 93.056 72 3 2 1591 1661 246647134 246647204 2.990000e-18 104.0
81 TraesCS1A01G121100 chr6A 96.296 54 1 1 1212 1265 486084010 486083958 3.010000e-13 87.9
82 TraesCS1A01G121100 chr6A 96.296 54 1 1 1212 1265 486109594 486109542 3.010000e-13 87.9
83 TraesCS1A01G121100 chr6A 94.444 54 3 0 1212 1265 205602250 205602197 3.890000e-12 84.2
84 TraesCS1A01G121100 chr6A 94.444 54 0 3 1210 1260 507977613 507977560 5.030000e-11 80.5
85 TraesCS1A01G121100 chr6A 94.000 50 2 1 1076 1124 509614214 509614263 2.340000e-09 75.0
86 TraesCS1A01G121100 chr6A 95.000 40 2 0 962 1001 289393226 289393187 5.070000e-06 63.9
87 TraesCS1A01G121100 chr6A 95.000 40 2 0 962 1001 289419540 289419501 5.070000e-06 63.9
88 TraesCS1A01G121100 chr6A 95.000 40 2 0 962 1001 289492864 289492825 5.070000e-06 63.9
89 TraesCS1A01G121100 chr6A 93.182 44 1 2 1334 1377 320897017 320897058 5.070000e-06 63.9
90 TraesCS1A01G121100 chr5A 87.779 2602 270 32 3454 6043 162706250 162708815 0.000000e+00 3000.0
91 TraesCS1A01G121100 chr5A 84.097 742 74 31 2 715 36042376 36041651 0.000000e+00 676.0
92 TraesCS1A01G121100 chr5A 83.984 743 75 31 1 715 36032887 36032161 0.000000e+00 673.0
93 TraesCS1A01G121100 chr5A 92.699 452 29 4 10 460 433513291 433512843 0.000000e+00 649.0
94 TraesCS1A01G121100 chr5A 83.288 742 80 31 2 715 36125378 36124653 1.420000e-180 643.0
95 TraesCS1A01G121100 chr5A 86.577 596 60 15 1676 2264 362676621 362676039 1.840000e-179 640.0
96 TraesCS1A01G121100 chr5A 83.826 711 72 31 14 696 36096632 36095937 2.380000e-178 636.0
97 TraesCS1A01G121100 chr5A 94.404 411 20 3 10 419 172437656 172438064 3.980000e-176 628.0
98 TraesCS1A01G121100 chr5A 94.404 411 20 3 10 419 172458336 172458744 3.980000e-176 628.0
99 TraesCS1A01G121100 chr5A 83.016 736 78 35 9 715 36068616 36067899 1.850000e-174 623.0
100 TraesCS1A01G121100 chr5A 86.957 575 39 19 1726 2269 326123473 326124042 1.120000e-171 614.0
101 TraesCS1A01G121100 chr5A 93.431 411 24 3 10 419 282163511 282163919 1.870000e-169 606.0
102 TraesCS1A01G121100 chr5A 92.701 411 27 3 10 419 282155338 282155746 1.880000e-164 590.0
103 TraesCS1A01G121100 chr5A 94.231 312 15 3 653 962 147477235 147477545 1.980000e-129 473.0
104 TraesCS1A01G121100 chr5A 93.891 311 18 1 653 962 147481622 147481932 9.190000e-128 468.0
105 TraesCS1A01G121100 chr5A 92.605 311 22 1 653 962 147469380 147469690 4.310000e-121 446.0
106 TraesCS1A01G121100 chr5A 92.557 309 22 1 655 962 190987284 190986976 5.570000e-120 442.0
107 TraesCS1A01G121100 chr5A 91.586 309 25 1 655 962 190999915 190999607 5.610000e-115 425.0
108 TraesCS1A01G121100 chr5A 97.183 71 2 0 962 1032 190987019 190986949 2.970000e-23 121.0
109 TraesCS1A01G121100 chr5A 97.183 71 2 0 962 1032 190999650 190999580 2.970000e-23 121.0
110 TraesCS1A01G121100 chr5A 95.775 71 3 0 962 1032 147477502 147477572 1.380000e-21 115.0
111 TraesCS1A01G121100 chr5A 95.775 71 3 0 962 1032 147481889 147481959 1.380000e-21 115.0
112 TraesCS1A01G121100 chr5A 95.775 71 3 0 962 1032 525452034 525451964 1.380000e-21 115.0
113 TraesCS1A01G121100 chr5A 96.970 66 2 0 967 1032 147469652 147469717 1.780000e-20 111.0
114 TraesCS1A01G121100 chr5A 96.970 66 2 0 967 1032 525473770 525473705 1.780000e-20 111.0
115 TraesCS1A01G121100 chr5A 91.935 62 5 0 1206 1267 493577184 493577245 3.010000e-13 87.9
116 TraesCS1A01G121100 chr5A 95.000 40 1 1 1081 1120 602289033 602288995 1.820000e-05 62.1
117 TraesCS1A01G121100 chr5A 96.875 32 1 0 1093 1124 473366958 473366989 3.000000e-03 54.7
118 TraesCS1A01G121100 chr2A 85.738 603 60 19 1676 2264 467789452 467788862 1.120000e-171 614.0
119 TraesCS1A01G121100 chr2A 97.391 230 5 1 1433 1661 411817781 411817552 2.050000e-104 390.0
120 TraesCS1A01G121100 chr2A 94.348 230 10 2 1433 1661 411809754 411809527 3.470000e-92 350.0
121 TraesCS1A01G121100 chr2A 92.908 141 10 0 1196 1336 350270025 350269885 7.960000e-49 206.0
122 TraesCS1A01G121100 chr2A 90.278 144 14 0 1196 1339 350299768 350299625 8.010000e-44 189.0
123 TraesCS1A01G121100 chr2A 79.842 253 28 14 2029 2271 482255168 482254929 4.860000e-36 163.0
124 TraesCS1A01G121100 chr2A 86.000 150 11 4 1196 1339 496837389 496837244 1.050000e-32 152.0
125 TraesCS1A01G121100 chr2A 84.884 86 10 3 1207 1289 293313197 293313282 3.890000e-12 84.2
126 TraesCS1A01G121100 chr2A 96.000 50 2 0 1404 1453 216158835 216158884 1.400000e-11 82.4
127 TraesCS1A01G121100 chr3D 74.043 601 103 31 1711 2271 286824397 286824984 4.790000e-46 196.0
128 TraesCS1A01G121100 chr2B 80.741 270 32 16 2012 2271 229510270 229510529 6.200000e-45 193.0
129 TraesCS1A01G121100 chr6B 73.830 577 92 40 1730 2273 648310714 648311264 2.240000e-39 174.0
130 TraesCS1A01G121100 chr4D 79.310 261 36 13 2027 2279 399474820 399475070 3.760000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G121100 chr1A 133513024 133519080 6056 True 3363.466667 5186 100.0000 1 6057 3 chr1A.!!$R10 6056
1 TraesCS1A01G121100 chr1A 395584196 395584911 715 False 643.000000 643 83.4700 1 706 1 chr1A.!!$F3 705
2 TraesCS1A01G121100 chr1A 226900975 226901563 588 True 623.000000 623 86.1160 1676 2265 1 chr1A.!!$R5 589
3 TraesCS1A01G121100 chr1A 133504936 133506574 1638 True 509.500000 568 88.5185 2265 3771 2 chr1A.!!$R9 1506
4 TraesCS1A01G121100 chr7A 214482077 214484702 2625 True 3297.000000 3297 89.3310 3409 6057 1 chr7A.!!$R3 2648
5 TraesCS1A01G121100 chr7A 391958944 391961610 2666 True 2924.000000 2924 86.5220 3356 6057 1 chr7A.!!$R7 2701
6 TraesCS1A01G121100 chr7A 515040587 515043230 2643 True 2822.000000 2822 86.0390 3395 6057 1 chr7A.!!$R10 2662
7 TraesCS1A01G121100 chr7A 395776345 395778936 2591 True 2784.000000 2784 86.1210 3439 6057 1 chr7A.!!$R9 2618
8 TraesCS1A01G121100 chr7A 418573145 418575474 2329 False 1552.000000 1552 79.1650 3714 6057 1 chr7A.!!$F10 2343
9 TraesCS1A01G121100 chr7A 296443245 296444331 1086 False 963.000000 963 83.4090 5004 6057 1 chr7A.!!$F9 1053
10 TraesCS1A01G121100 chr7A 448704076 448704912 836 False 928.000000 928 86.7370 5213 6057 1 chr7A.!!$F11 844
11 TraesCS1A01G121100 chr7A 358356297 358357116 819 True 756.000000 756 83.6540 5244 6057 1 chr7A.!!$R5 813
12 TraesCS1A01G121100 chr7A 233704352 233704940 588 False 641.000000 641 86.5450 1676 2267 1 chr7A.!!$F6 591
13 TraesCS1A01G121100 chr7A 233655961 233656562 601 False 630.000000 630 86.1340 1675 2264 1 chr7A.!!$F5 589
14 TraesCS1A01G121100 chr7A 394887711 394888450 739 True 579.000000 579 81.8540 7 715 1 chr7A.!!$R8 708
15 TraesCS1A01G121100 chr3A 135583312 135585861 2549 True 3110.000000 3110 88.6820 3488 6057 1 chr3A.!!$R1 2569
16 TraesCS1A01G121100 chr3A 407167167 407170498 3331 False 1831.500000 3241 89.0135 2265 6057 2 chr3A.!!$F8 3792
17 TraesCS1A01G121100 chr3A 201458261 201458868 607 False 599.000000 599 85.0650 1672 2264 1 chr3A.!!$F3 592
18 TraesCS1A01G121100 chr4A 442591730 442594382 2652 True 3190.000000 3190 88.3590 3367 6057 1 chr4A.!!$R6 2690
19 TraesCS1A01G121100 chr4A 310439840 310441821 1981 True 2418.000000 2418 88.6900 3439 5437 1 chr4A.!!$R2 1998
20 TraesCS1A01G121100 chr4A 242009721 242010776 1055 False 1038.000000 1038 84.8650 5012 6057 1 chr4A.!!$F5 1045
21 TraesCS1A01G121100 chr4A 685935050 685935786 736 False 590.000000 590 82.1090 2 706 1 chr4A.!!$F9 704
22 TraesCS1A01G121100 chr4A 685855023 685855759 736 False 579.000000 579 81.8910 2 706 1 chr4A.!!$F8 704
23 TraesCS1A01G121100 chr6A 259228076 259230654 2578 True 3133.000000 3133 88.6260 3285 5886 1 chr6A.!!$R5 2601
24 TraesCS1A01G121100 chr6A 320896770 320897998 1228 False 864.950000 1666 92.1755 1024 2264 2 chr6A.!!$F5 1240
25 TraesCS1A01G121100 chr6A 243176355 243177009 654 True 728.000000 728 86.6670 1591 2264 1 chr6A.!!$R2 673
26 TraesCS1A01G121100 chr6A 250995108 250995693 585 True 599.000000 599 85.5950 1690 2267 1 chr6A.!!$R3 577
27 TraesCS1A01G121100 chr6A 258826860 258827376 516 True 272.000000 272 77.2730 1774 2271 1 chr6A.!!$R4 497
28 TraesCS1A01G121100 chr5A 162706250 162708815 2565 False 3000.000000 3000 87.7790 3454 6043 1 chr5A.!!$F1 2589
29 TraesCS1A01G121100 chr5A 36041651 36042376 725 True 676.000000 676 84.0970 2 715 1 chr5A.!!$R2 713
30 TraesCS1A01G121100 chr5A 36032161 36032887 726 True 673.000000 673 83.9840 1 715 1 chr5A.!!$R1 714
31 TraesCS1A01G121100 chr5A 36124653 36125378 725 True 643.000000 643 83.2880 2 715 1 chr5A.!!$R5 713
32 TraesCS1A01G121100 chr5A 362676039 362676621 582 True 640.000000 640 86.5770 1676 2264 1 chr5A.!!$R6 588
33 TraesCS1A01G121100 chr5A 36095937 36096632 695 True 636.000000 636 83.8260 14 696 1 chr5A.!!$R4 682
34 TraesCS1A01G121100 chr5A 36067899 36068616 717 True 623.000000 623 83.0160 9 715 1 chr5A.!!$R3 706
35 TraesCS1A01G121100 chr5A 326123473 326124042 569 False 614.000000 614 86.9570 1726 2269 1 chr5A.!!$F6 543
36 TraesCS1A01G121100 chr2A 467788862 467789452 590 True 614.000000 614 85.7380 1676 2264 1 chr2A.!!$R5 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
930 978 0.034337 AAGCGTTTCGGCCTGTTCTA 59.966 50.0 0.00 0.00 0.00 2.10 F
978 1026 0.100146 GGTCGGCCTGTTCTAGTACG 59.900 60.0 0.00 0.00 0.00 3.67 F
981 1029 0.248539 CGGCCTGTTCTAGTACGAGC 60.249 60.0 0.00 5.36 0.00 5.03 F
1569 1624 0.251165 GGATCGAGAGGAGAGGGAGG 60.251 65.0 0.00 0.00 0.00 4.30 F
3391 3752 0.037326 TGAACCTCGATTTCTGCGCT 60.037 50.0 9.73 0.00 0.00 5.92 F
3480 3847 0.877071 GCCATGCCATATCTTCGTGG 59.123 55.0 0.00 0.00 39.32 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2524 2639 0.178990 GTGGAGCTTGGGTTTGGACT 60.179 55.0 0.00 0.0 0.00 3.85 R
3372 3733 0.037326 AGCGCAGAAATCGAGGTTCA 60.037 50.0 11.47 0.0 0.00 3.18 R
3391 3752 0.032515 TCGCAGATCTAGGGTTCCCA 60.033 55.0 10.73 0.0 0.00 4.37 R
3447 3814 0.108520 CATGGCAAAGATGGGCACAC 60.109 55.0 0.00 0.0 44.01 3.82 R
4343 4716 0.668401 GGCAAACAAGAGCATGGCAC 60.668 55.0 0.00 0.0 38.16 5.01 R
5887 6373 0.107214 CCCATCTGCCACATAACCGT 60.107 55.0 0.00 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.710326 TCCGGTAACTCGATTGAGATG 57.290 47.619 17.27 1.57 45.57 2.90
38 39 2.128035 GTAACTCGATTGAGATGCCGG 58.872 52.381 17.27 0.00 45.57 6.13
51 52 2.202866 TGCCGGTGCAAAAGGAAAA 58.797 47.368 1.90 0.00 46.66 2.29
52 53 0.103937 TGCCGGTGCAAAAGGAAAAG 59.896 50.000 1.90 0.00 46.66 2.27
53 54 0.104120 GCCGGTGCAAAAGGAAAAGT 59.896 50.000 1.90 0.00 37.47 2.66
54 55 1.851658 CCGGTGCAAAAGGAAAAGTG 58.148 50.000 0.00 0.00 0.00 3.16
55 56 1.407258 CCGGTGCAAAAGGAAAAGTGA 59.593 47.619 0.00 0.00 0.00 3.41
59 60 1.407258 TGCAAAAGGAAAAGTGACGGG 59.593 47.619 0.00 0.00 0.00 5.28
60 61 1.269569 GCAAAAGGAAAAGTGACGGGG 60.270 52.381 0.00 0.00 0.00 5.73
61 62 1.037493 AAAAGGAAAAGTGACGGGGC 58.963 50.000 0.00 0.00 0.00 5.80
62 63 1.170290 AAAGGAAAAGTGACGGGGCG 61.170 55.000 0.00 0.00 0.00 6.13
63 64 2.281276 GGAAAAGTGACGGGGCGT 60.281 61.111 0.00 0.00 45.10 5.68
64 65 2.613506 GGAAAAGTGACGGGGCGTG 61.614 63.158 0.00 0.00 41.37 5.34
65 66 1.890510 GAAAAGTGACGGGGCGTGT 60.891 57.895 0.00 0.00 41.37 4.49
68 69 2.391724 AAAGTGACGGGGCGTGTCAT 62.392 55.000 12.61 0.00 46.98 3.06
69 70 3.118454 GTGACGGGGCGTGTCATG 61.118 66.667 12.61 0.00 46.98 3.07
73 74 3.803082 CGGGGCGTGTCATGCAAG 61.803 66.667 18.54 5.44 0.00 4.01
107 108 3.543641 CGGATACCGGGTCCCCAC 61.544 72.222 19.09 0.00 44.15 4.61
108 109 3.543641 GGATACCGGGTCCCCACG 61.544 72.222 15.33 0.00 35.37 4.94
115 116 4.105553 GGGTCCCCACGGGTTAGC 62.106 72.222 0.00 0.00 44.74 3.09
127 137 0.322187 GGGTTAGCGGCAAAAGAGGA 60.322 55.000 1.45 0.00 0.00 3.71
129 139 1.087501 GTTAGCGGCAAAAGAGGAGG 58.912 55.000 1.45 0.00 0.00 4.30
130 140 0.676782 TTAGCGGCAAAAGAGGAGGC 60.677 55.000 1.45 0.00 0.00 4.70
131 141 1.553690 TAGCGGCAAAAGAGGAGGCT 61.554 55.000 1.45 0.00 0.00 4.58
134 144 1.296715 GGCAAAAGAGGAGGCTCGA 59.703 57.895 8.69 0.00 0.00 4.04
138 148 0.687354 AAAAGAGGAGGCTCGAGCAA 59.313 50.000 36.27 0.00 44.36 3.91
139 149 0.248843 AAAGAGGAGGCTCGAGCAAG 59.751 55.000 36.27 1.81 44.36 4.01
140 150 0.902516 AAGAGGAGGCTCGAGCAAGT 60.903 55.000 36.27 21.49 44.36 3.16
150 160 2.145225 CGAGCAAGTGACAACTCGG 58.855 57.895 12.20 0.00 46.20 4.63
151 161 0.318699 CGAGCAAGTGACAACTCGGA 60.319 55.000 12.20 0.00 46.20 4.55
157 167 1.066918 GTGACAACTCGGACACGGT 59.933 57.895 0.00 0.00 41.39 4.83
161 171 2.029073 AACTCGGACACGGTGCAG 59.971 61.111 8.30 2.42 41.39 4.41
162 172 2.495409 AACTCGGACACGGTGCAGA 61.495 57.895 8.30 6.63 41.39 4.26
165 175 2.279851 CGGACACGGTGCAGACAA 60.280 61.111 8.30 0.00 36.18 3.18
166 176 2.594962 CGGACACGGTGCAGACAAC 61.595 63.158 8.30 0.00 36.18 3.32
192 204 3.757493 TGCATCTCATACAACACATGCAA 59.243 39.130 1.99 0.00 42.69 4.08
193 205 4.217983 TGCATCTCATACAACACATGCAAA 59.782 37.500 1.99 0.00 42.69 3.68
194 206 4.560035 GCATCTCATACAACACATGCAAAC 59.440 41.667 0.00 0.00 37.24 2.93
199 211 4.274705 TCATACAACACATGCAAACGTTCT 59.725 37.500 0.00 0.00 0.00 3.01
209 221 0.318445 CAAACGTTCTCGGACGGTCT 60.318 55.000 0.00 0.00 43.11 3.85
227 240 3.069300 GGTCTTCTCGGGGTTATACCTTC 59.931 52.174 0.00 0.00 38.64 3.46
237 250 1.254570 GTTATACCTTCGAAGCGTGCG 59.745 52.381 19.99 8.17 0.00 5.34
243 256 0.989164 CTTCGAAGCGTGCGTTATCA 59.011 50.000 13.09 0.00 0.00 2.15
247 260 0.924090 GAAGCGTGCGTTATCAGAGG 59.076 55.000 0.00 0.00 0.00 3.69
253 266 1.066430 GTGCGTTATCAGAGGGGTTCA 60.066 52.381 0.00 0.00 0.00 3.18
257 270 3.868754 GCGTTATCAGAGGGGTTCAAGTT 60.869 47.826 0.00 0.00 0.00 2.66
258 271 3.933332 CGTTATCAGAGGGGTTCAAGTTC 59.067 47.826 0.00 0.00 0.00 3.01
259 272 4.562757 CGTTATCAGAGGGGTTCAAGTTCA 60.563 45.833 0.00 0.00 0.00 3.18
260 273 5.313712 GTTATCAGAGGGGTTCAAGTTCAA 58.686 41.667 0.00 0.00 0.00 2.69
262 275 3.820557 TCAGAGGGGTTCAAGTTCAAAG 58.179 45.455 0.00 0.00 0.00 2.77
263 276 2.294512 CAGAGGGGTTCAAGTTCAAAGC 59.705 50.000 0.00 0.00 0.00 3.51
265 278 0.313987 GGGGTTCAAGTTCAAAGCGG 59.686 55.000 0.00 0.00 0.00 5.52
266 279 1.029681 GGGTTCAAGTTCAAAGCGGT 58.970 50.000 0.00 0.00 0.00 5.68
271 287 2.489971 TCAAGTTCAAAGCGGTGTAGG 58.510 47.619 0.00 0.00 0.00 3.18
290 306 0.455005 GGGAAGTAGACGTTCTCGGG 59.545 60.000 0.00 0.00 41.85 5.14
291 307 1.457346 GGAAGTAGACGTTCTCGGGA 58.543 55.000 0.00 0.00 41.85 5.14
292 308 1.132073 GGAAGTAGACGTTCTCGGGAC 59.868 57.143 0.00 0.00 41.85 4.46
311 349 1.815003 ACGTTCGGTAGTGGAAGTAGG 59.185 52.381 0.00 0.00 0.00 3.18
312 350 1.133790 CGTTCGGTAGTGGAAGTAGGG 59.866 57.143 0.00 0.00 0.00 3.53
315 353 1.922447 TCGGTAGTGGAAGTAGGGGTA 59.078 52.381 0.00 0.00 0.00 3.69
317 355 2.621407 CGGTAGTGGAAGTAGGGGTACA 60.621 54.545 0.00 0.00 0.00 2.90
318 356 3.650948 GGTAGTGGAAGTAGGGGTACAT 58.349 50.000 0.00 0.00 0.00 2.29
319 357 3.387050 GGTAGTGGAAGTAGGGGTACATG 59.613 52.174 0.00 0.00 0.00 3.21
320 358 3.484953 AGTGGAAGTAGGGGTACATGA 57.515 47.619 0.00 0.00 0.00 3.07
324 371 2.100418 GGAAGTAGGGGTACATGACGAC 59.900 54.545 0.00 0.00 0.00 4.34
330 377 1.382522 GGGTACATGACGACGGTAGA 58.617 55.000 0.00 0.00 0.00 2.59
334 381 2.408271 ACATGACGACGGTAGAGGTA 57.592 50.000 0.00 0.00 0.00 3.08
337 384 3.118629 ACATGACGACGGTAGAGGTACTA 60.119 47.826 0.00 0.00 41.55 1.82
338 385 3.170791 TGACGACGGTAGAGGTACTAG 57.829 52.381 0.00 0.00 41.55 2.57
339 386 2.497675 TGACGACGGTAGAGGTACTAGT 59.502 50.000 0.00 0.00 41.55 2.57
340 387 2.863137 GACGACGGTAGAGGTACTAGTG 59.137 54.545 5.39 0.00 41.55 2.74
341 388 2.497675 ACGACGGTAGAGGTACTAGTGA 59.502 50.000 5.39 0.00 41.55 3.41
342 389 3.133721 ACGACGGTAGAGGTACTAGTGAT 59.866 47.826 5.39 0.00 41.55 3.06
343 390 3.740321 CGACGGTAGAGGTACTAGTGATC 59.260 52.174 5.39 0.61 41.55 2.92
344 391 4.501229 CGACGGTAGAGGTACTAGTGATCT 60.501 50.000 5.39 8.43 41.55 2.75
350 397 2.032620 AGGTACTAGTGATCTTGGCGG 58.967 52.381 5.39 0.00 36.02 6.13
374 421 4.036734 TGGTAGTCGTTCACGTTCTTAGTT 59.963 41.667 0.00 0.00 40.80 2.24
383 430 5.090652 TCACGTTCTTAGTTGCACAATTC 57.909 39.130 0.00 0.00 0.00 2.17
404 451 0.750850 CCGTAGATGTTCGGGGTCAT 59.249 55.000 0.00 0.00 42.61 3.06
419 466 1.407437 GGTCATGGCGAGGAACTTGAT 60.407 52.381 0.00 0.00 44.22 2.57
544 591 2.044551 GGTCGGGGTCGGTAGAGT 60.045 66.667 0.00 0.00 36.95 3.24
673 720 0.841289 TCGTGGTTCTTGGGGTCTTT 59.159 50.000 0.00 0.00 0.00 2.52
680 727 3.296854 GTTCTTGGGGTCTTTGGACTTT 58.703 45.455 0.00 0.00 41.82 2.66
681 728 3.680777 TCTTGGGGTCTTTGGACTTTT 57.319 42.857 0.00 0.00 41.82 2.27
696 744 1.134310 ACTTTTCGGTCCCGTTCTTGT 60.134 47.619 5.52 0.00 40.74 3.16
701 749 1.364901 GGTCCCGTTCTTGTGACGA 59.635 57.895 0.00 0.00 0.00 4.20
717 765 1.822692 CGATAGTCGTTCGCGTTCG 59.177 57.895 5.77 12.58 42.11 3.95
718 766 0.854853 CGATAGTCGTTCGCGTTCGT 60.855 55.000 19.95 8.92 42.11 3.85
719 767 1.253999 GATAGTCGTTCGCGTTCGTT 58.746 50.000 19.95 14.03 42.11 3.85
720 768 1.645751 GATAGTCGTTCGCGTTCGTTT 59.354 47.619 19.95 13.78 42.11 3.60
721 769 0.771756 TAGTCGTTCGCGTTCGTTTG 59.228 50.000 19.95 1.44 42.11 2.93
722 770 1.435966 GTCGTTCGCGTTCGTTTGG 60.436 57.895 19.95 0.00 42.11 3.28
723 771 2.127906 CGTTCGCGTTCGTTTGGG 60.128 61.111 5.77 0.00 36.96 4.12
724 772 2.587679 CGTTCGCGTTCGTTTGGGA 61.588 57.895 5.77 0.00 36.96 4.37
725 773 1.203313 GTTCGCGTTCGTTTGGGAG 59.797 57.895 5.77 0.00 36.96 4.30
726 774 1.957186 TTCGCGTTCGTTTGGGAGG 60.957 57.895 5.77 0.00 36.96 4.30
727 775 2.647680 TTCGCGTTCGTTTGGGAGGT 62.648 55.000 5.77 0.00 36.96 3.85
728 776 1.373246 CGCGTTCGTTTGGGAGGTA 60.373 57.895 0.00 0.00 0.00 3.08
729 777 1.620413 CGCGTTCGTTTGGGAGGTAC 61.620 60.000 0.00 0.00 0.00 3.34
731 779 1.875157 GCGTTCGTTTGGGAGGTACTT 60.875 52.381 0.00 0.00 41.55 2.24
732 780 1.796459 CGTTCGTTTGGGAGGTACTTG 59.204 52.381 0.00 0.00 41.55 3.16
733 781 2.546373 CGTTCGTTTGGGAGGTACTTGA 60.546 50.000 0.00 0.00 41.55 3.02
734 782 3.671716 GTTCGTTTGGGAGGTACTTGAT 58.328 45.455 0.00 0.00 41.55 2.57
735 783 3.328382 TCGTTTGGGAGGTACTTGATG 57.672 47.619 0.00 0.00 41.55 3.07
736 784 2.901192 TCGTTTGGGAGGTACTTGATGA 59.099 45.455 0.00 0.00 41.55 2.92
737 785 3.000727 CGTTTGGGAGGTACTTGATGAC 58.999 50.000 0.00 0.00 41.55 3.06
738 786 3.306780 CGTTTGGGAGGTACTTGATGACT 60.307 47.826 0.00 0.00 41.55 3.41
739 787 4.254492 GTTTGGGAGGTACTTGATGACTC 58.746 47.826 0.00 0.00 41.55 3.36
740 788 2.467880 TGGGAGGTACTTGATGACTCC 58.532 52.381 0.00 0.00 45.41 3.85
743 791 4.762289 GGAGGTACTTGATGACTCCAAT 57.238 45.455 0.00 0.00 45.45 3.16
744 792 5.871396 GGAGGTACTTGATGACTCCAATA 57.129 43.478 0.00 0.00 45.45 1.90
745 793 6.426646 GGAGGTACTTGATGACTCCAATAT 57.573 41.667 0.00 0.00 45.45 1.28
746 794 6.459923 GGAGGTACTTGATGACTCCAATATC 58.540 44.000 0.00 0.00 45.45 1.63
747 795 6.268847 GGAGGTACTTGATGACTCCAATATCT 59.731 42.308 0.00 0.00 45.45 1.98
748 796 7.202047 GGAGGTACTTGATGACTCCAATATCTT 60.202 40.741 0.00 0.00 45.45 2.40
749 797 7.731054 AGGTACTTGATGACTCCAATATCTTC 58.269 38.462 0.00 0.00 27.25 2.87
750 798 6.642950 GGTACTTGATGACTCCAATATCTTCG 59.357 42.308 0.00 0.00 0.00 3.79
751 799 6.471233 ACTTGATGACTCCAATATCTTCGA 57.529 37.500 0.00 0.00 0.00 3.71
752 800 6.511416 ACTTGATGACTCCAATATCTTCGAG 58.489 40.000 0.00 0.00 36.91 4.04
753 801 5.459536 TGATGACTCCAATATCTTCGAGG 57.540 43.478 0.00 0.00 0.00 4.63
754 802 4.281941 TGATGACTCCAATATCTTCGAGGG 59.718 45.833 0.00 0.00 0.00 4.30
755 803 2.365617 TGACTCCAATATCTTCGAGGGC 59.634 50.000 0.00 0.00 0.00 5.19
756 804 1.341531 ACTCCAATATCTTCGAGGGCG 59.658 52.381 0.00 0.00 39.35 6.13
757 805 1.613925 CTCCAATATCTTCGAGGGCGA 59.386 52.381 0.00 0.00 46.33 5.54
765 813 4.349682 TCGAGGGCGATGGTAGTT 57.650 55.556 0.00 0.00 42.51 2.24
766 814 1.813859 TCGAGGGCGATGGTAGTTG 59.186 57.895 0.00 0.00 42.51 3.16
767 815 0.968901 TCGAGGGCGATGGTAGTTGT 60.969 55.000 0.00 0.00 42.51 3.32
768 816 0.742505 CGAGGGCGATGGTAGTTGTA 59.257 55.000 0.00 0.00 40.82 2.41
769 817 1.535437 CGAGGGCGATGGTAGTTGTAC 60.535 57.143 0.00 0.00 40.82 2.90
770 818 1.479323 GAGGGCGATGGTAGTTGTACA 59.521 52.381 0.00 0.00 0.00 2.90
771 819 1.206371 AGGGCGATGGTAGTTGTACAC 59.794 52.381 0.00 0.00 0.00 2.90
772 820 1.066716 GGGCGATGGTAGTTGTACACA 60.067 52.381 0.00 0.00 0.00 3.72
773 821 2.268298 GGCGATGGTAGTTGTACACAG 58.732 52.381 0.00 0.00 0.00 3.66
774 822 2.353406 GGCGATGGTAGTTGTACACAGT 60.353 50.000 0.00 0.00 0.00 3.55
775 823 2.921754 GCGATGGTAGTTGTACACAGTC 59.078 50.000 0.00 0.00 0.00 3.51
776 824 3.508762 CGATGGTAGTTGTACACAGTCC 58.491 50.000 0.00 0.00 0.00 3.85
777 825 3.057104 CGATGGTAGTTGTACACAGTCCA 60.057 47.826 0.00 3.26 0.00 4.02
778 826 3.738830 TGGTAGTTGTACACAGTCCAC 57.261 47.619 0.00 0.00 0.00 4.02
779 827 2.034939 TGGTAGTTGTACACAGTCCACG 59.965 50.000 0.00 0.00 0.00 4.94
780 828 2.294233 GGTAGTTGTACACAGTCCACGA 59.706 50.000 0.00 0.00 0.00 4.35
781 829 2.795175 AGTTGTACACAGTCCACGAG 57.205 50.000 0.00 0.00 0.00 4.18
782 830 2.304092 AGTTGTACACAGTCCACGAGA 58.696 47.619 0.00 0.00 0.00 4.04
783 831 2.034305 AGTTGTACACAGTCCACGAGAC 59.966 50.000 0.00 0.00 46.71 3.36
801 849 2.650163 CGTCGATCGTTTGAGGTCC 58.350 57.895 15.94 0.00 34.52 4.46
802 850 1.132199 CGTCGATCGTTTGAGGTCCG 61.132 60.000 15.94 1.48 34.52 4.79
803 851 0.169672 GTCGATCGTTTGAGGTCCGA 59.830 55.000 15.94 0.00 34.79 4.55
804 852 1.100510 TCGATCGTTTGAGGTCCGAT 58.899 50.000 15.94 0.00 43.42 4.18
805 853 1.475280 TCGATCGTTTGAGGTCCGATT 59.525 47.619 15.94 0.00 41.05 3.34
806 854 2.094390 TCGATCGTTTGAGGTCCGATTT 60.094 45.455 15.94 0.00 41.05 2.17
807 855 3.129113 TCGATCGTTTGAGGTCCGATTTA 59.871 43.478 15.94 0.00 41.05 1.40
808 856 3.242248 CGATCGTTTGAGGTCCGATTTAC 59.758 47.826 7.03 0.00 41.05 2.01
809 857 2.598589 TCGTTTGAGGTCCGATTTACG 58.401 47.619 0.00 0.00 42.18 3.18
819 867 3.299738 CGATTTACGGGTTTTGCCG 57.700 52.632 0.00 0.00 38.44 5.69
820 868 0.797542 CGATTTACGGGTTTTGCCGA 59.202 50.000 0.00 0.00 38.44 5.54
821 869 1.464521 CGATTTACGGGTTTTGCCGAC 60.465 52.381 0.00 0.00 38.44 4.79
822 870 1.536331 GATTTACGGGTTTTGCCGACA 59.464 47.619 0.00 0.00 38.44 4.35
823 871 1.606903 TTTACGGGTTTTGCCGACAT 58.393 45.000 0.00 0.00 38.44 3.06
824 872 0.875728 TTACGGGTTTTGCCGACATG 59.124 50.000 0.00 0.00 38.44 3.21
825 873 0.035036 TACGGGTTTTGCCGACATGA 59.965 50.000 0.00 0.00 38.44 3.07
826 874 1.234615 ACGGGTTTTGCCGACATGAG 61.235 55.000 0.00 0.00 38.44 2.90
827 875 1.234615 CGGGTTTTGCCGACATGAGT 61.235 55.000 0.00 0.00 38.44 3.41
828 876 0.240945 GGGTTTTGCCGACATGAGTG 59.759 55.000 0.00 0.00 38.44 3.51
829 877 0.240945 GGTTTTGCCGACATGAGTGG 59.759 55.000 0.00 0.00 0.00 4.00
830 878 0.951558 GTTTTGCCGACATGAGTGGT 59.048 50.000 0.00 0.00 0.00 4.16
831 879 2.147958 GTTTTGCCGACATGAGTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
832 880 1.803334 TTTGCCGACATGAGTGGTAC 58.197 50.000 0.00 0.00 0.00 3.34
833 881 0.973632 TTGCCGACATGAGTGGTACT 59.026 50.000 0.00 0.00 0.00 2.73
834 882 0.973632 TGCCGACATGAGTGGTACTT 59.026 50.000 0.00 0.00 0.00 2.24
835 883 1.337728 TGCCGACATGAGTGGTACTTG 60.338 52.381 0.00 0.00 0.00 3.16
836 884 1.067142 GCCGACATGAGTGGTACTTGA 60.067 52.381 0.00 0.00 0.00 3.02
837 885 2.607187 CCGACATGAGTGGTACTTGAC 58.393 52.381 0.00 0.00 0.00 3.18
838 886 2.251040 CGACATGAGTGGTACTTGACG 58.749 52.381 0.00 0.00 0.00 4.35
839 887 2.351447 CGACATGAGTGGTACTTGACGT 60.351 50.000 0.00 0.00 0.00 4.34
840 888 3.650139 GACATGAGTGGTACTTGACGTT 58.350 45.455 0.00 0.00 0.00 3.99
841 889 4.056050 GACATGAGTGGTACTTGACGTTT 58.944 43.478 0.00 0.00 0.00 3.60
842 890 4.448210 ACATGAGTGGTACTTGACGTTTT 58.552 39.130 0.00 0.00 0.00 2.43
843 891 4.272504 ACATGAGTGGTACTTGACGTTTTG 59.727 41.667 0.00 0.00 0.00 2.44
844 892 3.864243 TGAGTGGTACTTGACGTTTTGT 58.136 40.909 0.00 0.00 0.00 2.83
845 893 3.619483 TGAGTGGTACTTGACGTTTTGTG 59.381 43.478 0.00 0.00 0.00 3.33
846 894 3.602483 AGTGGTACTTGACGTTTTGTGT 58.398 40.909 0.00 0.00 0.00 3.72
847 895 4.757594 AGTGGTACTTGACGTTTTGTGTA 58.242 39.130 0.00 0.00 0.00 2.90
848 896 4.807304 AGTGGTACTTGACGTTTTGTGTAG 59.193 41.667 0.00 0.00 0.00 2.74
849 897 4.805192 GTGGTACTTGACGTTTTGTGTAGA 59.195 41.667 0.00 0.00 0.00 2.59
850 898 4.805192 TGGTACTTGACGTTTTGTGTAGAC 59.195 41.667 0.00 0.00 0.00 2.59
851 899 4.085415 GGTACTTGACGTTTTGTGTAGACG 60.085 45.833 0.00 0.00 42.13 4.18
852 900 3.772932 ACTTGACGTTTTGTGTAGACGA 58.227 40.909 1.90 0.00 39.85 4.20
853 901 4.175516 ACTTGACGTTTTGTGTAGACGAA 58.824 39.130 1.90 0.00 39.85 3.85
854 902 4.032104 ACTTGACGTTTTGTGTAGACGAAC 59.968 41.667 1.90 0.00 39.85 3.95
855 903 3.772932 TGACGTTTTGTGTAGACGAACT 58.227 40.909 1.90 0.00 39.85 3.01
856 904 4.175516 TGACGTTTTGTGTAGACGAACTT 58.824 39.130 1.90 0.00 39.85 2.66
857 905 4.031991 TGACGTTTTGTGTAGACGAACTTG 59.968 41.667 1.90 0.00 39.85 3.16
858 906 3.307782 ACGTTTTGTGTAGACGAACTTGG 59.692 43.478 1.90 0.00 39.85 3.61
859 907 3.614588 GTTTTGTGTAGACGAACTTGGC 58.385 45.455 0.00 0.00 0.00 4.52
860 908 1.493772 TTGTGTAGACGAACTTGGCG 58.506 50.000 0.00 0.00 0.00 5.69
861 909 0.942410 TGTGTAGACGAACTTGGCGC 60.942 55.000 0.00 0.00 0.00 6.53
862 910 0.942410 GTGTAGACGAACTTGGCGCA 60.942 55.000 10.83 0.00 0.00 6.09
863 911 0.037697 TGTAGACGAACTTGGCGCAT 60.038 50.000 10.83 0.00 0.00 4.73
864 912 0.645868 GTAGACGAACTTGGCGCATC 59.354 55.000 10.83 0.00 0.00 3.91
865 913 0.459585 TAGACGAACTTGGCGCATCC 60.460 55.000 10.83 0.00 0.00 3.51
866 914 3.083600 GACGAACTTGGCGCATCCG 62.084 63.158 10.83 6.02 37.80 4.18
867 915 2.813474 CGAACTTGGCGCATCCGA 60.813 61.111 10.83 0.00 37.80 4.55
868 916 2.387445 CGAACTTGGCGCATCCGAA 61.387 57.895 10.83 0.00 37.80 4.30
869 917 1.425428 GAACTTGGCGCATCCGAAG 59.575 57.895 10.83 5.29 37.80 3.79
887 935 0.909623 AGGTACTTGGTGAATCCCCG 59.090 55.000 0.00 0.00 27.25 5.73
888 936 0.616891 GGTACTTGGTGAATCCCCGT 59.383 55.000 0.00 0.00 34.77 5.28
889 937 1.832998 GGTACTTGGTGAATCCCCGTA 59.167 52.381 0.00 0.00 34.77 4.02
890 938 2.159000 GGTACTTGGTGAATCCCCGTAG 60.159 54.545 0.00 0.00 34.77 3.51
891 939 1.652947 ACTTGGTGAATCCCCGTAGT 58.347 50.000 0.00 0.00 34.77 2.73
892 940 1.553704 ACTTGGTGAATCCCCGTAGTC 59.446 52.381 0.00 0.00 34.77 2.59
893 941 0.533491 TTGGTGAATCCCCGTAGTCG 59.467 55.000 0.00 0.00 34.77 4.18
894 942 0.612732 TGGTGAATCCCCGTAGTCGT 60.613 55.000 0.00 0.00 34.77 4.34
895 943 0.179119 GGTGAATCCCCGTAGTCGTG 60.179 60.000 0.00 0.00 35.01 4.35
896 944 0.804933 GTGAATCCCCGTAGTCGTGC 60.805 60.000 0.00 0.00 35.01 5.34
897 945 1.252215 TGAATCCCCGTAGTCGTGCA 61.252 55.000 0.00 0.00 35.01 4.57
898 946 0.804933 GAATCCCCGTAGTCGTGCAC 60.805 60.000 6.82 6.82 35.01 4.57
899 947 2.552585 AATCCCCGTAGTCGTGCACG 62.553 60.000 32.76 32.76 41.45 5.34
903 951 2.503375 CGTAGTCGTGCACGGGTC 60.503 66.667 36.41 25.59 40.29 4.46
904 952 2.503375 GTAGTCGTGCACGGGTCG 60.503 66.667 36.41 13.54 40.29 4.79
905 953 2.979676 TAGTCGTGCACGGGTCGT 60.980 61.111 36.41 19.41 42.36 4.34
906 954 1.670730 TAGTCGTGCACGGGTCGTA 60.671 57.895 36.41 15.69 38.32 3.43
907 955 1.638388 TAGTCGTGCACGGGTCGTAG 61.638 60.000 36.41 8.60 38.32 3.51
908 956 2.669229 TCGTGCACGGGTCGTAGA 60.669 61.111 36.41 14.12 38.32 2.59
909 957 2.202440 CGTGCACGGGTCGTAGAG 60.202 66.667 31.15 0.00 38.32 2.43
910 958 2.181021 GTGCACGGGTCGTAGAGG 59.819 66.667 0.00 0.00 38.32 3.69
911 959 2.034532 TGCACGGGTCGTAGAGGA 59.965 61.111 0.00 0.00 38.32 3.71
912 960 1.604308 TGCACGGGTCGTAGAGGAA 60.604 57.895 0.00 0.00 38.32 3.36
913 961 1.139095 GCACGGGTCGTAGAGGAAG 59.861 63.158 0.00 0.00 38.32 3.46
914 962 1.139095 CACGGGTCGTAGAGGAAGC 59.861 63.158 0.00 0.00 38.32 3.86
915 963 2.404995 ACGGGTCGTAGAGGAAGCG 61.405 63.158 0.00 0.00 38.73 4.68
916 964 2.404995 CGGGTCGTAGAGGAAGCGT 61.405 63.158 0.00 0.00 36.95 5.07
917 965 1.888736 GGGTCGTAGAGGAAGCGTT 59.111 57.895 0.00 0.00 36.95 4.84
918 966 0.245813 GGGTCGTAGAGGAAGCGTTT 59.754 55.000 0.00 0.00 36.95 3.60
919 967 1.626747 GGTCGTAGAGGAAGCGTTTC 58.373 55.000 3.02 3.02 36.95 2.78
920 968 1.257539 GTCGTAGAGGAAGCGTTTCG 58.742 55.000 5.89 0.00 36.95 3.46
921 969 0.169672 TCGTAGAGGAAGCGTTTCGG 59.830 55.000 5.89 0.00 33.98 4.30
922 970 1.411493 CGTAGAGGAAGCGTTTCGGC 61.411 60.000 5.89 0.61 33.98 5.54
923 971 1.082679 GTAGAGGAAGCGTTTCGGCC 61.083 60.000 5.89 0.00 33.98 6.13
924 972 1.255667 TAGAGGAAGCGTTTCGGCCT 61.256 55.000 0.00 5.49 33.98 5.19
925 973 2.358737 AGGAAGCGTTTCGGCCTG 60.359 61.111 0.00 0.00 33.98 4.85
926 974 2.668550 GGAAGCGTTTCGGCCTGT 60.669 61.111 0.00 0.00 33.98 4.00
927 975 2.258726 GGAAGCGTTTCGGCCTGTT 61.259 57.895 0.00 0.00 33.98 3.16
928 976 1.206831 GAAGCGTTTCGGCCTGTTC 59.793 57.895 0.00 0.00 0.00 3.18
929 977 1.227853 AAGCGTTTCGGCCTGTTCT 60.228 52.632 0.00 0.00 0.00 3.01
930 978 0.034337 AAGCGTTTCGGCCTGTTCTA 59.966 50.000 0.00 0.00 0.00 2.10
931 979 0.389948 AGCGTTTCGGCCTGTTCTAG 60.390 55.000 0.00 0.00 0.00 2.43
932 980 0.669625 GCGTTTCGGCCTGTTCTAGT 60.670 55.000 0.00 0.00 0.00 2.57
933 981 1.403249 GCGTTTCGGCCTGTTCTAGTA 60.403 52.381 0.00 0.00 0.00 1.82
934 982 2.257034 CGTTTCGGCCTGTTCTAGTAC 58.743 52.381 0.00 0.00 0.00 2.73
935 983 2.257034 GTTTCGGCCTGTTCTAGTACG 58.743 52.381 0.00 0.00 0.00 3.67
936 984 1.825090 TTCGGCCTGTTCTAGTACGA 58.175 50.000 0.00 0.00 32.95 3.43
937 985 1.376543 TCGGCCTGTTCTAGTACGAG 58.623 55.000 0.00 0.00 31.72 4.18
938 986 0.248539 CGGCCTGTTCTAGTACGAGC 60.249 60.000 0.00 5.36 0.00 5.03
939 987 0.815734 GGCCTGTTCTAGTACGAGCA 59.184 55.000 13.18 0.00 0.00 4.26
940 988 1.409427 GGCCTGTTCTAGTACGAGCAT 59.591 52.381 13.18 0.00 0.00 3.79
941 989 2.544069 GGCCTGTTCTAGTACGAGCATC 60.544 54.545 13.18 0.00 0.00 3.91
942 990 2.544069 GCCTGTTCTAGTACGAGCATCC 60.544 54.545 8.18 0.00 0.00 3.51
943 991 2.688446 CCTGTTCTAGTACGAGCATCCA 59.312 50.000 0.00 0.00 0.00 3.41
944 992 3.319405 CCTGTTCTAGTACGAGCATCCAT 59.681 47.826 0.00 0.00 0.00 3.41
945 993 4.519350 CCTGTTCTAGTACGAGCATCCATA 59.481 45.833 0.00 0.00 0.00 2.74
946 994 5.184096 CCTGTTCTAGTACGAGCATCCATAT 59.816 44.000 0.00 0.00 0.00 1.78
947 995 6.013842 TGTTCTAGTACGAGCATCCATATG 57.986 41.667 0.00 0.00 36.09 1.78
948 996 5.048013 TGTTCTAGTACGAGCATCCATATGG 60.048 44.000 16.25 16.25 33.38 2.74
949 997 4.663334 TCTAGTACGAGCATCCATATGGT 58.337 43.478 21.28 6.34 46.32 3.55
956 1004 2.860009 AGCATCCATATGGTCTTGCTG 58.140 47.619 30.83 18.30 39.65 4.41
957 1005 2.440627 AGCATCCATATGGTCTTGCTGA 59.559 45.455 30.83 11.78 39.65 4.26
958 1006 3.074094 AGCATCCATATGGTCTTGCTGAT 59.926 43.478 30.83 17.84 39.65 2.90
959 1007 3.190744 GCATCCATATGGTCTTGCTGATG 59.809 47.826 26.00 18.95 35.44 3.07
960 1008 3.497103 TCCATATGGTCTTGCTGATGG 57.503 47.619 21.28 0.00 36.06 3.51
961 1009 2.779430 TCCATATGGTCTTGCTGATGGT 59.221 45.455 21.28 0.00 36.15 3.55
962 1010 3.144506 CCATATGGTCTTGCTGATGGTC 58.855 50.000 14.09 0.00 31.15 4.02
963 1011 2.602257 TATGGTCTTGCTGATGGTCG 57.398 50.000 0.00 0.00 0.00 4.79
964 1012 0.107508 ATGGTCTTGCTGATGGTCGG 60.108 55.000 0.00 0.00 0.00 4.79
970 1018 2.045926 GCTGATGGTCGGCCTGTT 60.046 61.111 7.97 0.00 42.80 3.16
971 1019 2.109126 GCTGATGGTCGGCCTGTTC 61.109 63.158 7.97 2.12 42.80 3.18
972 1020 1.599047 CTGATGGTCGGCCTGTTCT 59.401 57.895 7.97 0.00 35.27 3.01
973 1021 0.824109 CTGATGGTCGGCCTGTTCTA 59.176 55.000 7.97 0.00 35.27 2.10
974 1022 0.824109 TGATGGTCGGCCTGTTCTAG 59.176 55.000 7.97 0.00 35.27 2.43
975 1023 0.824759 GATGGTCGGCCTGTTCTAGT 59.175 55.000 7.97 0.00 35.27 2.57
976 1024 2.029623 GATGGTCGGCCTGTTCTAGTA 58.970 52.381 7.97 0.00 35.27 1.82
977 1025 1.180029 TGGTCGGCCTGTTCTAGTAC 58.820 55.000 7.97 0.00 35.27 2.73
978 1026 0.100146 GGTCGGCCTGTTCTAGTACG 59.900 60.000 0.00 0.00 0.00 3.67
979 1027 1.089920 GTCGGCCTGTTCTAGTACGA 58.910 55.000 0.00 0.00 32.55 3.43
980 1028 1.063764 GTCGGCCTGTTCTAGTACGAG 59.936 57.143 0.00 0.00 34.66 4.18
981 1029 0.248539 CGGCCTGTTCTAGTACGAGC 60.249 60.000 0.00 5.36 0.00 5.03
982 1030 0.815734 GGCCTGTTCTAGTACGAGCA 59.184 55.000 13.18 0.00 0.00 4.26
983 1031 1.409427 GGCCTGTTCTAGTACGAGCAT 59.591 52.381 13.18 0.00 0.00 3.79
984 1032 2.544069 GGCCTGTTCTAGTACGAGCATC 60.544 54.545 13.18 0.00 0.00 3.91
985 1033 2.544069 GCCTGTTCTAGTACGAGCATCC 60.544 54.545 8.18 0.00 0.00 3.51
986 1034 2.688446 CCTGTTCTAGTACGAGCATCCA 59.312 50.000 0.00 0.00 0.00 3.41
987 1035 3.319405 CCTGTTCTAGTACGAGCATCCAT 59.681 47.826 0.00 0.00 0.00 3.41
988 1036 4.519350 CCTGTTCTAGTACGAGCATCCATA 59.481 45.833 0.00 0.00 0.00 2.74
989 1037 5.184096 CCTGTTCTAGTACGAGCATCCATAT 59.816 44.000 0.00 0.00 0.00 1.78
990 1038 6.013842 TGTTCTAGTACGAGCATCCATATG 57.986 41.667 0.00 0.00 36.09 1.78
991 1039 5.048013 TGTTCTAGTACGAGCATCCATATGG 60.048 44.000 16.25 16.25 33.38 2.74
992 1040 4.663334 TCTAGTACGAGCATCCATATGGT 58.337 43.478 21.28 6.34 46.32 3.55
999 1047 2.860009 AGCATCCATATGGTCTTGCTG 58.140 47.619 30.83 18.30 39.65 4.41
1000 1048 2.440627 AGCATCCATATGGTCTTGCTGA 59.559 45.455 30.83 11.78 39.65 4.26
1001 1049 3.074094 AGCATCCATATGGTCTTGCTGAT 59.926 43.478 30.83 17.84 39.65 2.90
1002 1050 3.190744 GCATCCATATGGTCTTGCTGATG 59.809 47.826 26.00 18.95 35.44 3.07
1003 1051 3.497103 TCCATATGGTCTTGCTGATGG 57.503 47.619 21.28 0.00 36.06 3.51
1004 1052 2.779430 TCCATATGGTCTTGCTGATGGT 59.221 45.455 21.28 0.00 36.15 3.55
1005 1053 2.882761 CCATATGGTCTTGCTGATGGTG 59.117 50.000 14.09 0.00 31.15 4.17
1006 1054 3.548770 CATATGGTCTTGCTGATGGTGT 58.451 45.455 0.00 0.00 0.00 4.16
1007 1055 4.444733 CCATATGGTCTTGCTGATGGTGTA 60.445 45.833 14.09 0.00 31.15 2.90
1008 1056 2.472695 TGGTCTTGCTGATGGTGTAC 57.527 50.000 0.00 0.00 0.00 2.90
1009 1057 1.977854 TGGTCTTGCTGATGGTGTACT 59.022 47.619 0.00 0.00 0.00 2.73
1010 1058 2.371841 TGGTCTTGCTGATGGTGTACTT 59.628 45.455 0.00 0.00 0.00 2.24
1011 1059 2.744202 GGTCTTGCTGATGGTGTACTTG 59.256 50.000 0.00 0.00 0.00 3.16
1012 1060 3.557054 GGTCTTGCTGATGGTGTACTTGA 60.557 47.826 0.00 0.00 0.00 3.02
1013 1061 3.433615 GTCTTGCTGATGGTGTACTTGAC 59.566 47.826 0.00 0.00 0.00 3.18
1014 1062 2.078849 TGCTGATGGTGTACTTGACG 57.921 50.000 0.00 0.00 0.00 4.35
1015 1063 1.616374 TGCTGATGGTGTACTTGACGA 59.384 47.619 0.00 0.00 0.00 4.20
1016 1064 2.263077 GCTGATGGTGTACTTGACGAG 58.737 52.381 0.00 0.00 0.00 4.18
1017 1065 2.352814 GCTGATGGTGTACTTGACGAGT 60.353 50.000 0.00 0.00 42.55 4.18
1018 1066 3.119602 GCTGATGGTGTACTTGACGAGTA 60.120 47.826 0.00 0.00 39.86 2.59
1027 1075 1.825474 ACTTGACGAGTACCATGGAGG 59.175 52.381 21.47 4.76 45.67 4.30
1028 1076 0.535335 TTGACGAGTACCATGGAGGC 59.465 55.000 21.47 7.80 43.14 4.70
1031 1079 2.423898 CGAGTACCATGGAGGCGGT 61.424 63.158 21.47 0.00 43.14 5.68
1060 1108 4.785453 GGCAGCGGGAAGGTCCAG 62.785 72.222 0.00 0.00 38.64 3.86
1144 1192 0.762461 GAGGCTAGAGCTCATGGGGT 60.762 60.000 17.77 0.00 41.70 4.95
1149 1197 4.864334 GAGCTCATGGGGTGGCGG 62.864 72.222 9.40 0.00 0.00 6.13
1186 1234 4.373116 GGAGACGGTTCAGCGGCA 62.373 66.667 7.06 0.00 0.00 5.69
1197 1252 2.116533 CAGCGGCAAGGATGATGCA 61.117 57.895 1.45 0.00 45.60 3.96
1246 1301 3.803162 GGAGAAGGGAGCAGGGGC 61.803 72.222 0.00 0.00 41.61 5.80
1267 1322 2.750350 CGACTGGGGAAGGCAAGT 59.250 61.111 0.00 0.00 30.58 3.16
1357 1412 4.335647 AAGGTCAGCGGGTGCCAG 62.336 66.667 18.22 0.00 44.31 4.85
1443 1498 0.324830 AAGGACGAGGGAAGGAGAGG 60.325 60.000 0.00 0.00 0.00 3.69
1445 1500 2.756283 ACGAGGGAAGGAGAGGCG 60.756 66.667 0.00 0.00 0.00 5.52
1466 1521 3.356639 GAGCGTGCGGGACAGATCA 62.357 63.158 0.00 0.00 0.00 2.92
1514 1569 2.086251 CTCCTCTCCTGAGCGATGCC 62.086 65.000 0.00 0.00 38.93 4.40
1548 1603 0.324460 GGAAGGGAACGAGGAGGAGA 60.324 60.000 0.00 0.00 0.00 3.71
1549 1604 1.558233 GAAGGGAACGAGGAGGAGAA 58.442 55.000 0.00 0.00 0.00 2.87
1565 1620 2.504367 GAGAAGGATCGAGAGGAGAGG 58.496 57.143 0.00 0.00 0.00 3.69
1569 1624 0.251165 GGATCGAGAGGAGAGGGAGG 60.251 65.000 0.00 0.00 0.00 4.30
1570 1625 0.768622 GATCGAGAGGAGAGGGAGGA 59.231 60.000 0.00 0.00 0.00 3.71
1571 1626 0.476771 ATCGAGAGGAGAGGGAGGAC 59.523 60.000 0.00 0.00 0.00 3.85
1572 1627 0.622154 TCGAGAGGAGAGGGAGGACT 60.622 60.000 0.00 0.00 0.00 3.85
1617 1672 0.693092 TTAGGAATAGCTGGGGCGGT 60.693 55.000 0.00 0.00 44.37 5.68
1672 1727 2.111999 GAGCCCCTGCACACACACTA 62.112 60.000 0.00 0.00 41.13 2.74
1674 1729 0.609131 GCCCCTGCACACACACTATT 60.609 55.000 0.00 0.00 37.47 1.73
1682 1737 3.324846 TGCACACACACTATTTCTCTCCT 59.675 43.478 0.00 0.00 0.00 3.69
1832 1887 2.939460 AATACATTTGGCACCGCTTC 57.061 45.000 0.00 0.00 0.00 3.86
1942 1999 2.421751 TTGTGGAGAACGGGAAAACA 57.578 45.000 0.00 0.00 0.00 2.83
2105 2191 5.074115 TGTGAATTCCCTCGGTTTAAATGT 58.926 37.500 2.27 0.00 0.00 2.71
2209 2323 2.223386 ACGAACCAAACAAATCACACGG 60.223 45.455 0.00 0.00 0.00 4.94
2441 2555 1.134699 GCTCTCCGTCATTGGATCACA 60.135 52.381 0.00 0.00 37.41 3.58
2442 2556 2.819115 CTCTCCGTCATTGGATCACAG 58.181 52.381 0.00 0.00 37.41 3.66
2443 2557 2.428530 CTCTCCGTCATTGGATCACAGA 59.571 50.000 0.00 0.00 37.41 3.41
2459 2573 0.661020 CAGACGTGTGGGTGAAAACC 59.339 55.000 4.46 0.00 0.00 3.27
2460 2574 0.544697 AGACGTGTGGGTGAAAACCT 59.455 50.000 0.00 0.00 0.00 3.50
2480 2594 2.836981 CTCACCTCATTTGGACTCTCCT 59.163 50.000 0.00 0.00 37.46 3.69
2510 2625 5.367060 CCCCTACCTATAAATATGCCTCTCC 59.633 48.000 0.00 0.00 0.00 3.71
2545 2661 1.908299 CCAAACCCAAGCTCCACCC 60.908 63.158 0.00 0.00 0.00 4.61
2553 2669 3.547787 AAGCTCCACCCTCCTCCGT 62.548 63.158 0.00 0.00 0.00 4.69
2555 2673 2.283966 CTCCACCCTCCTCCGTGT 60.284 66.667 0.00 0.00 0.00 4.49
3391 3752 0.037326 TGAACCTCGATTTCTGCGCT 60.037 50.000 9.73 0.00 0.00 5.92
3447 3814 7.227711 TCACTAAGTCTCCAGATTTCTATCTCG 59.772 40.741 0.00 0.00 39.11 4.04
3480 3847 0.877071 GCCATGCCATATCTTCGTGG 59.123 55.000 0.00 0.00 39.32 4.94
3485 3852 1.206132 TGCCATATCTTCGTGGTCGTT 59.794 47.619 0.00 0.00 37.81 3.85
3486 3853 2.277084 GCCATATCTTCGTGGTCGTTT 58.723 47.619 0.00 0.00 37.81 3.60
3549 3916 2.851805 TGCTCTACATGCTAGTGTCG 57.148 50.000 0.00 0.00 33.62 4.35
3642 4009 8.704668 TCTACTGGAATTCATCATAACTTGCTA 58.295 33.333 7.93 0.00 0.00 3.49
3808 4176 3.194116 AGGCCACATGATGTTGTTGATTC 59.806 43.478 5.01 0.00 0.00 2.52
3848 4217 3.219281 GCCAAGTCCTTTCCTGTTACAA 58.781 45.455 0.00 0.00 0.00 2.41
3938 4308 9.109393 GAGTGTTTTGAAGATATGGTTATGCTA 57.891 33.333 0.00 0.00 0.00 3.49
4000 4370 5.301835 AGCTTGTCATTACCATGCTCTAT 57.698 39.130 0.00 0.00 38.50 1.98
4003 4373 7.282585 AGCTTGTCATTACCATGCTCTATTTA 58.717 34.615 0.00 0.00 38.50 1.40
4055 4425 3.998341 ACATGAAGTGCATTTTTGCCATC 59.002 39.130 0.00 0.00 34.15 3.51
4071 4441 4.081406 TGCCATCTGTTTTGCTAGTGATT 58.919 39.130 0.00 0.00 0.00 2.57
4104 4474 2.129607 GAACTTGTGCTTGCCATGTTG 58.870 47.619 14.67 0.00 32.35 3.33
4160 4530 3.444916 CTTGTGATGCCATGAAATGCTC 58.555 45.455 0.00 0.00 44.97 4.26
4165 4535 2.203470 TGCCATGAAATGCTCTGTGA 57.797 45.000 0.00 0.00 44.97 3.58
4225 4595 4.558178 TGTTTCTGCCATGCTATGTTTTG 58.442 39.130 0.00 0.00 0.00 2.44
4226 4596 4.039004 TGTTTCTGCCATGCTATGTTTTGT 59.961 37.500 0.00 0.00 0.00 2.83
4227 4597 5.242615 TGTTTCTGCCATGCTATGTTTTGTA 59.757 36.000 0.00 0.00 0.00 2.41
4271 4643 3.132160 CACTTGCCATGTTTGCATTCAA 58.868 40.909 0.00 0.00 38.76 2.69
4343 4716 4.868171 TGTTCATTGCCTTTAGTACTAGCG 59.132 41.667 2.23 0.00 0.00 4.26
4366 4741 1.274167 CCATGCTCTTGTTTGCCATGT 59.726 47.619 0.00 0.00 0.00 3.21
4371 4746 3.825585 TGCTCTTGTTTGCCATGTTATGA 59.174 39.130 0.00 0.00 0.00 2.15
4373 4748 4.802039 GCTCTTGTTTGCCATGTTATGATG 59.198 41.667 0.00 0.00 0.00 3.07
4391 4766 4.869215 TGATGTTGTAGCATGTTGTTTGG 58.131 39.130 0.00 0.00 0.00 3.28
4666 5044 2.859526 TGCATCGTTCTTGTTTTGCA 57.140 40.000 0.00 0.00 37.73 4.08
4697 5075 3.186119 CAAACCGTGCATCTGTTTTTGT 58.814 40.909 8.05 0.00 32.64 2.83
4702 5080 4.277174 ACCGTGCATCTGTTTTTGTTGATA 59.723 37.500 0.00 0.00 0.00 2.15
4703 5081 5.048083 ACCGTGCATCTGTTTTTGTTGATAT 60.048 36.000 0.00 0.00 0.00 1.63
4704 5082 5.863397 CCGTGCATCTGTTTTTGTTGATATT 59.137 36.000 0.00 0.00 0.00 1.28
4705 5083 6.365789 CCGTGCATCTGTTTTTGTTGATATTT 59.634 34.615 0.00 0.00 0.00 1.40
4706 5084 7.540400 CCGTGCATCTGTTTTTGTTGATATTTA 59.460 33.333 0.00 0.00 0.00 1.40
4707 5085 9.075519 CGTGCATCTGTTTTTGTTGATATTTAT 57.924 29.630 0.00 0.00 0.00 1.40
4813 5193 3.643320 TCCTTCTGGAGTACCATATGCAG 59.357 47.826 0.00 0.00 45.87 4.41
4819 5199 1.860950 GAGTACCATATGCAGTGCACG 59.139 52.381 22.44 11.94 43.04 5.34
4821 5201 2.006888 GTACCATATGCAGTGCACGTT 58.993 47.619 22.44 7.54 43.04 3.99
4822 5202 0.804364 ACCATATGCAGTGCACGTTG 59.196 50.000 22.44 17.17 43.04 4.10
4861 5241 3.435566 CATGTCTTGCATCATGTTGCTC 58.564 45.455 25.02 14.84 43.18 4.26
4881 5261 1.882311 TGCATTGCACCGTGAATCC 59.118 52.632 7.38 0.00 31.71 3.01
4882 5262 0.892814 TGCATTGCACCGTGAATCCA 60.893 50.000 7.38 0.00 31.71 3.41
4883 5263 0.457035 GCATTGCACCGTGAATCCAT 59.543 50.000 1.65 0.00 0.00 3.41
4884 5264 1.799917 GCATTGCACCGTGAATCCATG 60.800 52.381 1.65 0.00 0.00 3.66
4885 5265 1.744522 CATTGCACCGTGAATCCATGA 59.255 47.619 1.65 0.00 0.00 3.07
4892 5272 4.440525 GCACCGTGAATCCATGATTGATTT 60.441 41.667 1.65 0.00 31.89 2.17
5010 5391 1.000938 CAACCCTGAGAACTTTGCAGC 60.001 52.381 0.00 0.00 0.00 5.25
5335 5775 0.597377 GGCCTTTTGCTCGGTGTTTG 60.597 55.000 0.00 0.00 40.92 2.93
5544 6019 9.555727 TTAACCCGAGGATAATCTTAATTCAAG 57.444 33.333 0.00 0.00 35.38 3.02
5546 6021 7.217906 ACCCGAGGATAATCTTAATTCAAGAC 58.782 38.462 0.00 0.00 46.01 3.01
5547 6022 6.651225 CCCGAGGATAATCTTAATTCAAGACC 59.349 42.308 0.00 0.00 46.01 3.85
5548 6023 6.651225 CCGAGGATAATCTTAATTCAAGACCC 59.349 42.308 0.00 0.00 46.01 4.46
5549 6024 6.651225 CGAGGATAATCTTAATTCAAGACCCC 59.349 42.308 0.00 0.00 46.01 4.95
5550 6025 7.473511 CGAGGATAATCTTAATTCAAGACCCCT 60.474 40.741 0.00 0.00 46.01 4.79
5699 6180 5.537300 ACGAGATATGTGCAACTCCTATT 57.463 39.130 0.00 0.00 38.04 1.73
5887 6373 2.435372 ACTTTCAAGAGTTGTGCCCA 57.565 45.000 0.00 0.00 0.00 5.36
5912 6399 4.162131 GGTTATGTGGCAGATGGGAATTTT 59.838 41.667 7.49 0.00 0.00 1.82
6026 6521 0.661020 GAAGTGAACACGGTTGGGTG 59.339 55.000 0.00 0.00 43.54 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 0.104120 ACTTTTCCTTTTGCACCGGC 59.896 50.000 0.00 0.00 41.68 6.13
38 39 2.459934 CCGTCACTTTTCCTTTTGCAC 58.540 47.619 0.00 0.00 0.00 4.57
45 46 2.032071 CGCCCCGTCACTTTTCCT 59.968 61.111 0.00 0.00 0.00 3.36
48 49 1.890510 GACACGCCCCGTCACTTTT 60.891 57.895 0.00 0.00 38.32 2.27
51 52 3.311110 ATGACACGCCCCGTCACT 61.311 61.111 0.00 0.00 45.64 3.41
52 53 3.118454 CATGACACGCCCCGTCAC 61.118 66.667 0.00 0.00 45.64 3.67
55 56 4.634703 TTGCATGACACGCCCCGT 62.635 61.111 0.00 0.00 42.36 5.28
59 60 1.430632 CATCCTTGCATGACACGCC 59.569 57.895 0.00 0.00 0.00 5.68
60 61 1.308069 ACCATCCTTGCATGACACGC 61.308 55.000 0.00 0.00 0.00 5.34
61 62 0.448990 CACCATCCTTGCATGACACG 59.551 55.000 0.00 0.00 0.00 4.49
62 63 0.813184 CCACCATCCTTGCATGACAC 59.187 55.000 0.00 0.00 0.00 3.67
63 64 0.323633 CCCACCATCCTTGCATGACA 60.324 55.000 0.00 0.00 0.00 3.58
64 65 1.039233 CCCCACCATCCTTGCATGAC 61.039 60.000 0.00 0.00 0.00 3.06
65 66 1.307309 CCCCACCATCCTTGCATGA 59.693 57.895 0.00 0.00 0.00 3.07
68 69 2.440147 CACCCCACCATCCTTGCA 59.560 61.111 0.00 0.00 0.00 4.08
69 70 3.070576 GCACCCCACCATCCTTGC 61.071 66.667 0.00 0.00 0.00 4.01
70 71 1.379044 GAGCACCCCACCATCCTTG 60.379 63.158 0.00 0.00 0.00 3.61
103 104 4.708386 TTGCCGCTAACCCGTGGG 62.708 66.667 2.58 2.58 42.03 4.61
106 107 0.953960 CTCTTTTGCCGCTAACCCGT 60.954 55.000 0.00 0.00 0.00 5.28
107 108 1.644786 CCTCTTTTGCCGCTAACCCG 61.645 60.000 0.00 0.00 0.00 5.28
108 109 0.322187 TCCTCTTTTGCCGCTAACCC 60.322 55.000 0.00 0.00 0.00 4.11
110 111 1.087501 CCTCCTCTTTTGCCGCTAAC 58.912 55.000 0.00 0.00 0.00 2.34
111 112 0.676782 GCCTCCTCTTTTGCCGCTAA 60.677 55.000 0.00 0.00 0.00 3.09
112 113 1.078426 GCCTCCTCTTTTGCCGCTA 60.078 57.895 0.00 0.00 0.00 4.26
113 114 2.360475 GCCTCCTCTTTTGCCGCT 60.360 61.111 0.00 0.00 0.00 5.52
115 116 2.103042 CGAGCCTCCTCTTTTGCCG 61.103 63.158 0.00 0.00 35.90 5.69
127 137 0.601311 GTTGTCACTTGCTCGAGCCT 60.601 55.000 33.23 13.93 41.18 4.58
129 139 0.787183 GAGTTGTCACTTGCTCGAGC 59.213 55.000 30.42 30.42 35.76 5.03
134 144 0.464036 TGTCCGAGTTGTCACTTGCT 59.536 50.000 0.00 0.00 33.37 3.91
138 148 1.362717 CCGTGTCCGAGTTGTCACT 59.637 57.895 0.00 0.00 35.63 3.41
139 149 1.066918 ACCGTGTCCGAGTTGTCAC 59.933 57.895 0.00 0.00 35.63 3.67
140 150 1.066752 CACCGTGTCCGAGTTGTCA 59.933 57.895 0.00 0.00 35.63 3.58
150 160 2.594962 CCGTTGTCTGCACCGTGTC 61.595 63.158 0.00 0.00 0.00 3.67
151 161 2.587753 CCGTTGTCTGCACCGTGT 60.588 61.111 0.00 0.00 0.00 4.49
157 167 1.965930 GATGCACCCGTTGTCTGCA 60.966 57.895 0.00 0.00 44.71 4.41
161 171 1.933853 GTATGAGATGCACCCGTTGTC 59.066 52.381 0.00 0.00 0.00 3.18
162 172 1.277842 TGTATGAGATGCACCCGTTGT 59.722 47.619 0.00 0.00 0.00 3.32
165 175 1.277842 TGTTGTATGAGATGCACCCGT 59.722 47.619 0.00 0.00 0.00 5.28
166 176 1.665679 GTGTTGTATGAGATGCACCCG 59.334 52.381 0.00 0.00 0.00 5.28
167 177 2.710377 TGTGTTGTATGAGATGCACCC 58.290 47.619 0.00 0.00 0.00 4.61
168 178 3.488047 GCATGTGTTGTATGAGATGCACC 60.488 47.826 0.00 0.00 36.91 5.01
169 179 3.127376 TGCATGTGTTGTATGAGATGCAC 59.873 43.478 0.00 0.00 40.83 4.57
170 180 3.345414 TGCATGTGTTGTATGAGATGCA 58.655 40.909 0.00 0.00 42.84 3.96
192 204 0.039708 GAAGACCGTCCGAGAACGTT 60.040 55.000 0.00 0.00 41.01 3.99
193 205 0.888285 AGAAGACCGTCCGAGAACGT 60.888 55.000 0.00 0.00 41.01 3.99
194 206 0.179194 GAGAAGACCGTCCGAGAACG 60.179 60.000 0.00 0.00 42.24 3.95
199 211 2.749044 CCCGAGAAGACCGTCCGA 60.749 66.667 0.00 0.00 0.00 4.55
209 221 3.017048 TCGAAGGTATAACCCCGAGAA 57.983 47.619 6.98 0.00 39.75 2.87
227 240 0.567968 CTCTGATAACGCACGCTTCG 59.432 55.000 0.00 0.00 0.00 3.79
237 250 4.906618 TGAACTTGAACCCCTCTGATAAC 58.093 43.478 0.00 0.00 0.00 1.89
243 256 2.587522 GCTTTGAACTTGAACCCCTCT 58.412 47.619 0.00 0.00 0.00 3.69
247 260 1.029681 ACCGCTTTGAACTTGAACCC 58.970 50.000 0.00 0.00 0.00 4.11
253 266 1.544759 CCCCTACACCGCTTTGAACTT 60.545 52.381 0.00 0.00 0.00 2.66
257 270 0.323629 CTTCCCCTACACCGCTTTGA 59.676 55.000 0.00 0.00 0.00 2.69
258 271 0.036306 ACTTCCCCTACACCGCTTTG 59.964 55.000 0.00 0.00 0.00 2.77
259 272 1.553704 CTACTTCCCCTACACCGCTTT 59.446 52.381 0.00 0.00 0.00 3.51
260 273 1.192428 CTACTTCCCCTACACCGCTT 58.808 55.000 0.00 0.00 0.00 4.68
262 275 0.459078 GTCTACTTCCCCTACACCGC 59.541 60.000 0.00 0.00 0.00 5.68
263 276 0.737219 CGTCTACTTCCCCTACACCG 59.263 60.000 0.00 0.00 0.00 4.94
265 278 3.087781 AGAACGTCTACTTCCCCTACAC 58.912 50.000 0.00 0.00 0.00 2.90
266 279 3.350833 GAGAACGTCTACTTCCCCTACA 58.649 50.000 0.00 0.00 0.00 2.74
271 287 0.455005 CCCGAGAACGTCTACTTCCC 59.545 60.000 0.00 0.00 37.88 3.97
290 306 2.159462 CCTACTTCCACTACCGAACGTC 60.159 54.545 0.00 0.00 0.00 4.34
291 307 1.815003 CCTACTTCCACTACCGAACGT 59.185 52.381 0.00 0.00 0.00 3.99
292 308 1.133790 CCCTACTTCCACTACCGAACG 59.866 57.143 0.00 0.00 0.00 3.95
293 309 1.479730 CCCCTACTTCCACTACCGAAC 59.520 57.143 0.00 0.00 0.00 3.95
295 311 0.706433 ACCCCTACTTCCACTACCGA 59.294 55.000 0.00 0.00 0.00 4.69
303 341 2.100418 GTCGTCATGTACCCCTACTTCC 59.900 54.545 0.00 0.00 0.00 3.46
311 349 1.332997 CTCTACCGTCGTCATGTACCC 59.667 57.143 0.00 0.00 0.00 3.69
312 350 1.332997 CCTCTACCGTCGTCATGTACC 59.667 57.143 0.00 0.00 0.00 3.34
315 353 2.012673 GTACCTCTACCGTCGTCATGT 58.987 52.381 0.00 0.00 0.00 3.21
317 355 2.706339 AGTACCTCTACCGTCGTCAT 57.294 50.000 0.00 0.00 0.00 3.06
318 356 2.497675 ACTAGTACCTCTACCGTCGTCA 59.502 50.000 0.00 0.00 0.00 4.35
319 357 2.863137 CACTAGTACCTCTACCGTCGTC 59.137 54.545 0.00 0.00 0.00 4.20
320 358 2.497675 TCACTAGTACCTCTACCGTCGT 59.502 50.000 0.00 0.00 0.00 4.34
324 371 4.515944 CCAAGATCACTAGTACCTCTACCG 59.484 50.000 0.00 0.00 0.00 4.02
330 377 2.032620 CCGCCAAGATCACTAGTACCT 58.967 52.381 0.00 0.00 0.00 3.08
334 381 0.537188 CCACCGCCAAGATCACTAGT 59.463 55.000 0.00 0.00 0.00 2.57
336 383 1.754803 CTACCACCGCCAAGATCACTA 59.245 52.381 0.00 0.00 0.00 2.74
337 384 0.537188 CTACCACCGCCAAGATCACT 59.463 55.000 0.00 0.00 0.00 3.41
338 385 0.249398 ACTACCACCGCCAAGATCAC 59.751 55.000 0.00 0.00 0.00 3.06
339 386 0.535335 GACTACCACCGCCAAGATCA 59.465 55.000 0.00 0.00 0.00 2.92
340 387 0.527817 CGACTACCACCGCCAAGATC 60.528 60.000 0.00 0.00 0.00 2.75
341 388 1.255667 ACGACTACCACCGCCAAGAT 61.256 55.000 0.00 0.00 0.00 2.40
342 389 1.466025 AACGACTACCACCGCCAAGA 61.466 55.000 0.00 0.00 0.00 3.02
343 390 1.005394 AACGACTACCACCGCCAAG 60.005 57.895 0.00 0.00 0.00 3.61
344 391 1.005867 GAACGACTACCACCGCCAA 60.006 57.895 0.00 0.00 0.00 4.52
350 397 2.412421 AGAACGTGAACGACTACCAC 57.588 50.000 10.26 0.00 43.02 4.16
374 421 3.610040 ACATCTACGGAGAATTGTGCA 57.390 42.857 0.00 0.00 34.61 4.57
404 451 0.036388 GGACATCAAGTTCCTCGCCA 60.036 55.000 0.00 0.00 0.00 5.69
419 466 2.599281 TCGAAGCCTCCGTGGACA 60.599 61.111 0.00 0.00 38.35 4.02
544 591 0.106569 TCCCCTATCGCCGTGAGTAA 60.107 55.000 0.00 0.00 0.00 2.24
623 670 4.258543 GCATAGTACCACTACTTTTGCCA 58.741 43.478 0.00 0.00 36.16 4.92
680 727 0.249573 GTCACAAGAACGGGACCGAA 60.250 55.000 18.80 0.00 42.83 4.30
681 728 1.364901 GTCACAAGAACGGGACCGA 59.635 57.895 18.80 0.00 42.83 4.69
687 734 2.174764 CGACTATCGTCACAAGAACGG 58.825 52.381 0.00 0.00 40.23 4.44
701 749 1.384409 CAAACGAACGCGAACGACTAT 59.616 47.619 27.82 13.19 43.93 2.12
707 755 1.203313 CTCCCAAACGAACGCGAAC 59.797 57.895 15.93 5.01 41.64 3.95
715 763 2.901192 TCATCAAGTACCTCCCAAACGA 59.099 45.455 0.00 0.00 0.00 3.85
716 764 3.000727 GTCATCAAGTACCTCCCAAACG 58.999 50.000 0.00 0.00 0.00 3.60
717 765 4.254492 GAGTCATCAAGTACCTCCCAAAC 58.746 47.826 0.00 0.00 0.00 2.93
718 766 3.263425 GGAGTCATCAAGTACCTCCCAAA 59.737 47.826 1.73 0.00 36.52 3.28
719 767 2.838202 GGAGTCATCAAGTACCTCCCAA 59.162 50.000 1.73 0.00 36.52 4.12
720 768 2.225522 TGGAGTCATCAAGTACCTCCCA 60.226 50.000 8.92 0.00 40.82 4.37
721 769 2.467880 TGGAGTCATCAAGTACCTCCC 58.532 52.381 8.92 0.00 40.82 4.30
722 770 4.762289 ATTGGAGTCATCAAGTACCTCC 57.238 45.455 5.42 5.42 41.69 4.30
723 771 7.296628 AGATATTGGAGTCATCAAGTACCTC 57.703 40.000 0.00 0.00 0.00 3.85
724 772 7.470702 CGAAGATATTGGAGTCATCAAGTACCT 60.471 40.741 0.00 0.00 0.00 3.08
725 773 6.642950 CGAAGATATTGGAGTCATCAAGTACC 59.357 42.308 0.00 0.00 0.00 3.34
726 774 7.426410 TCGAAGATATTGGAGTCATCAAGTAC 58.574 38.462 0.00 0.00 0.00 2.73
727 775 7.255625 CCTCGAAGATATTGGAGTCATCAAGTA 60.256 40.741 10.63 0.00 33.89 2.24
728 776 6.462207 CCTCGAAGATATTGGAGTCATCAAGT 60.462 42.308 10.63 0.00 33.89 3.16
729 777 5.925397 CCTCGAAGATATTGGAGTCATCAAG 59.075 44.000 10.63 0.00 33.89 3.02
730 778 5.221521 CCCTCGAAGATATTGGAGTCATCAA 60.222 44.000 10.63 0.00 33.89 2.57
731 779 4.281941 CCCTCGAAGATATTGGAGTCATCA 59.718 45.833 10.63 0.00 33.89 3.07
732 780 4.815269 CCCTCGAAGATATTGGAGTCATC 58.185 47.826 10.63 0.00 33.89 2.92
733 781 3.007398 GCCCTCGAAGATATTGGAGTCAT 59.993 47.826 10.63 0.00 33.89 3.06
734 782 2.365617 GCCCTCGAAGATATTGGAGTCA 59.634 50.000 10.63 0.00 33.89 3.41
735 783 2.608261 CGCCCTCGAAGATATTGGAGTC 60.608 54.545 10.63 2.51 38.10 3.36
736 784 1.341531 CGCCCTCGAAGATATTGGAGT 59.658 52.381 10.63 0.00 38.10 3.85
737 785 1.613925 TCGCCCTCGAAGATATTGGAG 59.386 52.381 5.22 5.22 42.44 3.86
738 786 1.699730 TCGCCCTCGAAGATATTGGA 58.300 50.000 0.00 0.00 42.44 3.53
749 797 0.742505 TACAACTACCATCGCCCTCG 59.257 55.000 0.00 0.00 0.00 4.63
750 798 1.479323 TGTACAACTACCATCGCCCTC 59.521 52.381 0.00 0.00 0.00 4.30
751 799 1.206371 GTGTACAACTACCATCGCCCT 59.794 52.381 0.00 0.00 0.00 5.19
752 800 1.066716 TGTGTACAACTACCATCGCCC 60.067 52.381 0.00 0.00 0.00 6.13
753 801 2.268298 CTGTGTACAACTACCATCGCC 58.732 52.381 0.00 0.00 0.00 5.54
754 802 2.921754 GACTGTGTACAACTACCATCGC 59.078 50.000 0.00 0.00 0.00 4.58
755 803 3.057104 TGGACTGTGTACAACTACCATCG 60.057 47.826 0.00 0.00 0.00 3.84
756 804 4.243270 GTGGACTGTGTACAACTACCATC 58.757 47.826 13.48 6.74 32.16 3.51
757 805 3.305813 CGTGGACTGTGTACAACTACCAT 60.306 47.826 13.48 0.00 32.16 3.55
758 806 2.034939 CGTGGACTGTGTACAACTACCA 59.965 50.000 0.00 3.04 0.00 3.25
759 807 2.294233 TCGTGGACTGTGTACAACTACC 59.706 50.000 0.00 0.18 0.00 3.18
760 808 3.251729 TCTCGTGGACTGTGTACAACTAC 59.748 47.826 0.00 0.00 0.00 2.73
761 809 3.251729 GTCTCGTGGACTGTGTACAACTA 59.748 47.826 0.00 0.00 41.46 2.24
762 810 2.034305 GTCTCGTGGACTGTGTACAACT 59.966 50.000 0.00 0.00 41.46 3.16
763 811 2.391879 GTCTCGTGGACTGTGTACAAC 58.608 52.381 0.00 0.00 41.46 3.32
764 812 1.002142 CGTCTCGTGGACTGTGTACAA 60.002 52.381 0.00 0.00 42.44 2.41
765 813 0.589708 CGTCTCGTGGACTGTGTACA 59.410 55.000 0.00 0.00 42.44 2.90
766 814 0.590195 ACGTCTCGTGGACTGTGTAC 59.410 55.000 8.91 0.00 42.44 2.90
767 815 0.870393 GACGTCTCGTGGACTGTGTA 59.130 55.000 8.70 0.00 41.37 2.90
768 816 1.653115 GACGTCTCGTGGACTGTGT 59.347 57.895 8.70 1.65 41.37 3.72
769 817 1.440518 CGACGTCTCGTGGACTGTG 60.441 63.158 14.70 0.00 41.37 3.66
770 818 0.954449 ATCGACGTCTCGTGGACTGT 60.954 55.000 14.70 8.29 45.90 3.55
771 819 0.247735 GATCGACGTCTCGTGGACTG 60.248 60.000 14.70 0.00 45.90 3.51
772 820 1.694018 CGATCGACGTCTCGTGGACT 61.694 60.000 10.26 0.60 45.90 3.85
773 821 1.296722 CGATCGACGTCTCGTGGAC 60.297 63.158 10.26 3.90 45.90 4.02
774 822 3.087176 CGATCGACGTCTCGTGGA 58.913 61.111 10.26 9.07 46.93 4.02
783 831 4.691022 ATCGGACCTCAAACGATCGACG 62.691 54.545 24.34 9.44 43.07 5.12
784 832 0.169672 TCGGACCTCAAACGATCGAC 59.830 55.000 24.34 2.45 0.00 4.20
785 833 1.100510 ATCGGACCTCAAACGATCGA 58.899 50.000 24.34 0.00 43.07 3.59
786 834 1.922570 AATCGGACCTCAAACGATCG 58.077 50.000 14.88 14.88 45.50 3.69
787 835 3.242248 CGTAAATCGGACCTCAAACGATC 59.758 47.826 0.00 0.00 45.50 3.69
789 837 2.598589 CGTAAATCGGACCTCAAACGA 58.401 47.619 0.00 0.00 41.20 3.85
801 849 3.299738 CGGCAAAACCCGTAAATCG 57.700 52.632 0.00 0.00 43.24 3.34
809 857 0.240945 CACTCATGTCGGCAAAACCC 59.759 55.000 0.00 0.00 33.26 4.11
810 858 0.240945 CCACTCATGTCGGCAAAACC 59.759 55.000 0.00 0.00 0.00 3.27
811 859 0.951558 ACCACTCATGTCGGCAAAAC 59.048 50.000 0.00 0.00 0.00 2.43
812 860 2.147958 GTACCACTCATGTCGGCAAAA 58.852 47.619 0.00 0.00 0.00 2.44
813 861 1.346395 AGTACCACTCATGTCGGCAAA 59.654 47.619 0.00 0.00 0.00 3.68
814 862 0.973632 AGTACCACTCATGTCGGCAA 59.026 50.000 0.00 0.00 0.00 4.52
815 863 0.973632 AAGTACCACTCATGTCGGCA 59.026 50.000 0.00 0.00 0.00 5.69
816 864 1.067142 TCAAGTACCACTCATGTCGGC 60.067 52.381 0.00 0.00 0.00 5.54
817 865 2.607187 GTCAAGTACCACTCATGTCGG 58.393 52.381 0.00 0.00 0.00 4.79
818 866 2.251040 CGTCAAGTACCACTCATGTCG 58.749 52.381 0.00 0.00 0.00 4.35
819 867 3.299340 ACGTCAAGTACCACTCATGTC 57.701 47.619 0.00 0.00 0.00 3.06
820 868 3.746045 AACGTCAAGTACCACTCATGT 57.254 42.857 0.00 0.00 0.00 3.21
821 869 4.272504 ACAAAACGTCAAGTACCACTCATG 59.727 41.667 0.00 0.00 0.00 3.07
822 870 4.272504 CACAAAACGTCAAGTACCACTCAT 59.727 41.667 0.00 0.00 0.00 2.90
823 871 3.619483 CACAAAACGTCAAGTACCACTCA 59.381 43.478 0.00 0.00 0.00 3.41
824 872 3.619929 ACACAAAACGTCAAGTACCACTC 59.380 43.478 0.00 0.00 0.00 3.51
825 873 3.602483 ACACAAAACGTCAAGTACCACT 58.398 40.909 0.00 0.00 0.00 4.00
826 874 4.805192 TCTACACAAAACGTCAAGTACCAC 59.195 41.667 0.00 0.00 0.00 4.16
827 875 4.805192 GTCTACACAAAACGTCAAGTACCA 59.195 41.667 0.00 0.00 0.00 3.25
828 876 4.085415 CGTCTACACAAAACGTCAAGTACC 60.085 45.833 0.00 0.00 0.00 3.34
829 877 4.734854 TCGTCTACACAAAACGTCAAGTAC 59.265 41.667 0.00 0.00 37.64 2.73
830 878 4.919206 TCGTCTACACAAAACGTCAAGTA 58.081 39.130 0.00 0.00 37.64 2.24
831 879 3.772932 TCGTCTACACAAAACGTCAAGT 58.227 40.909 0.00 0.00 37.64 3.16
832 880 4.266976 AGTTCGTCTACACAAAACGTCAAG 59.733 41.667 0.00 0.00 37.64 3.02
833 881 4.175516 AGTTCGTCTACACAAAACGTCAA 58.824 39.130 0.00 0.00 37.64 3.18
834 882 3.772932 AGTTCGTCTACACAAAACGTCA 58.227 40.909 0.00 0.00 37.64 4.35
835 883 4.502558 CAAGTTCGTCTACACAAAACGTC 58.497 43.478 0.00 0.00 37.64 4.34
836 884 3.307782 CCAAGTTCGTCTACACAAAACGT 59.692 43.478 0.00 0.00 37.64 3.99
837 885 3.843510 GCCAAGTTCGTCTACACAAAACG 60.844 47.826 0.00 0.00 37.74 3.60
838 886 3.614588 GCCAAGTTCGTCTACACAAAAC 58.385 45.455 0.00 0.00 0.00 2.43
839 887 2.285756 CGCCAAGTTCGTCTACACAAAA 59.714 45.455 0.00 0.00 0.00 2.44
840 888 1.862201 CGCCAAGTTCGTCTACACAAA 59.138 47.619 0.00 0.00 0.00 2.83
841 889 1.493772 CGCCAAGTTCGTCTACACAA 58.506 50.000 0.00 0.00 0.00 3.33
842 890 0.942410 GCGCCAAGTTCGTCTACACA 60.942 55.000 0.00 0.00 0.00 3.72
843 891 0.942410 TGCGCCAAGTTCGTCTACAC 60.942 55.000 4.18 0.00 0.00 2.90
844 892 0.037697 ATGCGCCAAGTTCGTCTACA 60.038 50.000 4.18 0.00 0.00 2.74
845 893 0.645868 GATGCGCCAAGTTCGTCTAC 59.354 55.000 4.18 0.00 0.00 2.59
846 894 0.459585 GGATGCGCCAAGTTCGTCTA 60.460 55.000 4.18 0.00 36.34 2.59
847 895 1.741770 GGATGCGCCAAGTTCGTCT 60.742 57.895 4.18 0.00 36.34 4.18
848 896 2.785258 GGATGCGCCAAGTTCGTC 59.215 61.111 4.18 0.00 36.34 4.20
849 897 3.118454 CGGATGCGCCAAGTTCGT 61.118 61.111 4.18 0.00 35.94 3.85
850 898 2.296692 CTTCGGATGCGCCAAGTTCG 62.297 60.000 4.18 0.00 35.94 3.95
851 899 1.425428 CTTCGGATGCGCCAAGTTC 59.575 57.895 4.18 0.00 35.94 3.01
852 900 2.040544 CCTTCGGATGCGCCAAGTT 61.041 57.895 4.18 0.00 35.94 2.66
853 901 1.895020 TACCTTCGGATGCGCCAAGT 61.895 55.000 4.18 0.00 35.94 3.16
854 902 1.153449 TACCTTCGGATGCGCCAAG 60.153 57.895 4.18 0.99 35.94 3.61
855 903 1.448893 GTACCTTCGGATGCGCCAA 60.449 57.895 4.18 0.00 35.94 4.52
856 904 1.895020 AAGTACCTTCGGATGCGCCA 61.895 55.000 4.18 0.00 35.94 5.69
857 905 1.153429 AAGTACCTTCGGATGCGCC 60.153 57.895 4.18 0.00 0.00 6.53
858 906 1.429148 CCAAGTACCTTCGGATGCGC 61.429 60.000 0.00 0.00 0.00 6.09
859 907 0.108329 ACCAAGTACCTTCGGATGCG 60.108 55.000 0.00 0.00 0.00 4.73
860 908 1.066430 TCACCAAGTACCTTCGGATGC 60.066 52.381 0.00 0.00 0.00 3.91
861 909 3.328382 TTCACCAAGTACCTTCGGATG 57.672 47.619 0.00 0.00 0.00 3.51
862 910 3.118371 GGATTCACCAAGTACCTTCGGAT 60.118 47.826 0.00 0.00 38.79 4.18
863 911 2.235402 GGATTCACCAAGTACCTTCGGA 59.765 50.000 0.00 0.00 38.79 4.55
864 912 2.629051 GGATTCACCAAGTACCTTCGG 58.371 52.381 0.00 0.00 38.79 4.30
865 913 2.629051 GGGATTCACCAAGTACCTTCG 58.371 52.381 0.00 0.00 41.20 3.79
866 914 2.679930 CGGGGATTCACCAAGTACCTTC 60.680 54.545 5.64 0.00 41.20 3.46
867 915 1.280998 CGGGGATTCACCAAGTACCTT 59.719 52.381 5.64 0.00 41.20 3.50
868 916 0.909623 CGGGGATTCACCAAGTACCT 59.090 55.000 5.64 0.00 41.20 3.08
869 917 0.616891 ACGGGGATTCACCAAGTACC 59.383 55.000 5.64 0.00 41.20 3.34
870 918 2.498885 ACTACGGGGATTCACCAAGTAC 59.501 50.000 5.64 0.00 41.20 2.73
871 919 2.762327 GACTACGGGGATTCACCAAGTA 59.238 50.000 5.64 0.00 41.20 2.24
872 920 1.553704 GACTACGGGGATTCACCAAGT 59.446 52.381 9.20 9.20 41.20 3.16
873 921 1.470979 CGACTACGGGGATTCACCAAG 60.471 57.143 5.64 4.32 41.20 3.61
874 922 0.533491 CGACTACGGGGATTCACCAA 59.467 55.000 5.64 0.00 41.20 3.67
875 923 0.612732 ACGACTACGGGGATTCACCA 60.613 55.000 5.64 0.00 44.46 4.17
876 924 0.179119 CACGACTACGGGGATTCACC 60.179 60.000 0.00 0.00 44.46 4.02
877 925 0.804933 GCACGACTACGGGGATTCAC 60.805 60.000 0.00 0.00 43.78 3.18
878 926 1.252215 TGCACGACTACGGGGATTCA 61.252 55.000 0.00 0.00 43.78 2.57
879 927 0.804933 GTGCACGACTACGGGGATTC 60.805 60.000 0.00 0.00 45.96 2.52
880 928 1.217244 GTGCACGACTACGGGGATT 59.783 57.895 0.00 0.00 45.96 3.01
881 929 2.890371 GTGCACGACTACGGGGAT 59.110 61.111 0.00 0.00 45.96 3.85
882 930 3.740397 CGTGCACGACTACGGGGA 61.740 66.667 34.93 0.00 43.78 4.81
886 934 2.503375 GACCCGTGCACGACTACG 60.503 66.667 39.10 21.86 43.02 3.51
887 935 1.911293 TACGACCCGTGCACGACTAC 61.911 60.000 39.10 23.80 41.39 2.73
888 936 1.638388 CTACGACCCGTGCACGACTA 61.638 60.000 39.10 18.19 41.39 2.59
889 937 2.974489 CTACGACCCGTGCACGACT 61.974 63.158 39.10 23.35 41.39 4.18
890 938 2.503375 CTACGACCCGTGCACGAC 60.503 66.667 39.10 26.08 41.39 4.34
891 939 2.669229 TCTACGACCCGTGCACGA 60.669 61.111 39.10 18.01 41.39 4.35
892 940 2.202440 CTCTACGACCCGTGCACG 60.202 66.667 31.77 31.77 41.39 5.34
893 941 1.870055 TTCCTCTACGACCCGTGCAC 61.870 60.000 6.82 6.82 41.39 4.57
894 942 1.592400 CTTCCTCTACGACCCGTGCA 61.592 60.000 1.93 0.00 41.39 4.57
895 943 1.139095 CTTCCTCTACGACCCGTGC 59.861 63.158 1.93 0.00 41.39 5.34
896 944 1.139095 GCTTCCTCTACGACCCGTG 59.861 63.158 1.93 0.00 41.39 4.94
897 945 2.404995 CGCTTCCTCTACGACCCGT 61.405 63.158 0.00 0.00 44.35 5.28
898 946 1.930908 AACGCTTCCTCTACGACCCG 61.931 60.000 0.00 0.00 0.00 5.28
899 947 0.245813 AAACGCTTCCTCTACGACCC 59.754 55.000 0.00 0.00 0.00 4.46
900 948 1.626747 GAAACGCTTCCTCTACGACC 58.373 55.000 0.00 0.00 0.00 4.79
901 949 1.257539 CGAAACGCTTCCTCTACGAC 58.742 55.000 0.00 0.00 0.00 4.34
902 950 0.169672 CCGAAACGCTTCCTCTACGA 59.830 55.000 0.00 0.00 0.00 3.43
903 951 1.411493 GCCGAAACGCTTCCTCTACG 61.411 60.000 0.00 0.00 0.00 3.51
904 952 1.082679 GGCCGAAACGCTTCCTCTAC 61.083 60.000 0.00 0.00 0.00 2.59
905 953 1.217244 GGCCGAAACGCTTCCTCTA 59.783 57.895 0.00 0.00 0.00 2.43
906 954 2.047179 GGCCGAAACGCTTCCTCT 60.047 61.111 0.00 0.00 0.00 3.69
907 955 2.047179 AGGCCGAAACGCTTCCTC 60.047 61.111 0.00 0.00 0.00 3.71
908 956 2.358737 CAGGCCGAAACGCTTCCT 60.359 61.111 0.00 0.00 0.00 3.36
909 957 2.183858 GAACAGGCCGAAACGCTTCC 62.184 60.000 0.00 0.00 0.00 3.46
910 958 1.206831 GAACAGGCCGAAACGCTTC 59.793 57.895 0.00 0.00 0.00 3.86
911 959 0.034337 TAGAACAGGCCGAAACGCTT 59.966 50.000 0.00 0.00 0.00 4.68
912 960 0.389948 CTAGAACAGGCCGAAACGCT 60.390 55.000 0.00 0.00 0.00 5.07
913 961 0.669625 ACTAGAACAGGCCGAAACGC 60.670 55.000 0.00 0.00 0.00 4.84
914 962 2.257034 GTACTAGAACAGGCCGAAACG 58.743 52.381 0.00 0.00 0.00 3.60
915 963 2.095059 TCGTACTAGAACAGGCCGAAAC 60.095 50.000 0.00 0.00 30.51 2.78
916 964 2.161855 TCGTACTAGAACAGGCCGAAA 58.838 47.619 0.00 0.00 30.51 3.46
917 965 1.741706 CTCGTACTAGAACAGGCCGAA 59.258 52.381 0.00 0.00 32.38 4.30
918 966 1.376543 CTCGTACTAGAACAGGCCGA 58.623 55.000 0.00 0.00 0.00 5.54
919 967 0.248539 GCTCGTACTAGAACAGGCCG 60.249 60.000 0.00 0.00 0.00 6.13
920 968 0.815734 TGCTCGTACTAGAACAGGCC 59.184 55.000 0.00 0.00 0.00 5.19
921 969 2.544069 GGATGCTCGTACTAGAACAGGC 60.544 54.545 0.00 0.00 0.00 4.85
922 970 2.688446 TGGATGCTCGTACTAGAACAGG 59.312 50.000 0.00 0.00 0.00 4.00
923 971 4.576216 ATGGATGCTCGTACTAGAACAG 57.424 45.455 0.00 0.00 0.00 3.16
924 972 5.048013 CCATATGGATGCTCGTACTAGAACA 60.048 44.000 17.49 0.00 37.39 3.18
925 973 5.047943 ACCATATGGATGCTCGTACTAGAAC 60.048 44.000 28.77 0.00 38.94 3.01
926 974 5.077564 ACCATATGGATGCTCGTACTAGAA 58.922 41.667 28.77 0.00 38.94 2.10
927 975 4.663334 ACCATATGGATGCTCGTACTAGA 58.337 43.478 28.77 0.00 38.94 2.43
928 976 4.702612 AGACCATATGGATGCTCGTACTAG 59.297 45.833 28.77 0.00 38.94 2.57
929 977 4.663334 AGACCATATGGATGCTCGTACTA 58.337 43.478 28.77 0.00 38.94 1.82
930 978 3.501349 AGACCATATGGATGCTCGTACT 58.499 45.455 28.77 0.86 38.94 2.73
931 979 3.944055 AGACCATATGGATGCTCGTAC 57.056 47.619 28.77 7.45 38.94 3.67
932 980 3.554960 GCAAGACCATATGGATGCTCGTA 60.555 47.826 28.77 0.00 38.63 3.43
933 981 2.808202 GCAAGACCATATGGATGCTCGT 60.808 50.000 28.77 10.48 38.63 4.18
934 982 1.802960 GCAAGACCATATGGATGCTCG 59.197 52.381 28.77 12.25 38.63 5.03
935 983 2.812591 CAGCAAGACCATATGGATGCTC 59.187 50.000 32.33 20.59 44.55 4.26
936 984 2.440627 TCAGCAAGACCATATGGATGCT 59.559 45.455 30.85 30.85 45.95 3.79
937 985 2.854963 TCAGCAAGACCATATGGATGC 58.145 47.619 28.77 28.66 40.41 3.91
938 986 3.756963 CCATCAGCAAGACCATATGGATG 59.243 47.826 28.77 21.77 36.76 3.51
939 987 3.396946 ACCATCAGCAAGACCATATGGAT 59.603 43.478 28.77 13.24 37.80 3.41
940 988 2.779430 ACCATCAGCAAGACCATATGGA 59.221 45.455 28.77 3.15 37.80 3.41
941 989 3.144506 GACCATCAGCAAGACCATATGG 58.855 50.000 20.68 20.68 39.80 2.74
942 990 2.804527 CGACCATCAGCAAGACCATATG 59.195 50.000 0.00 0.00 0.00 1.78
943 991 2.224378 CCGACCATCAGCAAGACCATAT 60.224 50.000 0.00 0.00 0.00 1.78
944 992 1.138859 CCGACCATCAGCAAGACCATA 59.861 52.381 0.00 0.00 0.00 2.74
945 993 0.107508 CCGACCATCAGCAAGACCAT 60.108 55.000 0.00 0.00 0.00 3.55
946 994 1.296392 CCGACCATCAGCAAGACCA 59.704 57.895 0.00 0.00 0.00 4.02
947 995 2.109126 GCCGACCATCAGCAAGACC 61.109 63.158 0.00 0.00 0.00 3.85
948 996 2.109126 GGCCGACCATCAGCAAGAC 61.109 63.158 0.00 0.00 35.26 3.01
949 997 2.268920 GGCCGACCATCAGCAAGA 59.731 61.111 0.00 0.00 35.26 3.02
950 998 2.110967 CAGGCCGACCATCAGCAAG 61.111 63.158 0.00 0.00 39.06 4.01
951 999 2.046023 CAGGCCGACCATCAGCAA 60.046 61.111 0.00 0.00 39.06 3.91
952 1000 2.803155 GAACAGGCCGACCATCAGCA 62.803 60.000 0.00 0.00 39.06 4.41
953 1001 2.045926 AACAGGCCGACCATCAGC 60.046 61.111 0.00 0.00 39.06 4.26
954 1002 0.824109 TAGAACAGGCCGACCATCAG 59.176 55.000 0.00 0.00 39.06 2.90
955 1003 0.824109 CTAGAACAGGCCGACCATCA 59.176 55.000 0.00 0.00 39.06 3.07
956 1004 0.824759 ACTAGAACAGGCCGACCATC 59.175 55.000 0.00 0.00 39.06 3.51
957 1005 1.755380 GTACTAGAACAGGCCGACCAT 59.245 52.381 0.00 0.00 39.06 3.55
958 1006 1.180029 GTACTAGAACAGGCCGACCA 58.820 55.000 0.00 0.00 39.06 4.02
959 1007 0.100146 CGTACTAGAACAGGCCGACC 59.900 60.000 0.00 0.00 0.00 4.79
960 1008 1.063764 CTCGTACTAGAACAGGCCGAC 59.936 57.143 0.00 0.00 0.00 4.79
961 1009 1.376543 CTCGTACTAGAACAGGCCGA 58.623 55.000 0.00 0.00 0.00 5.54
962 1010 0.248539 GCTCGTACTAGAACAGGCCG 60.249 60.000 0.00 0.00 0.00 6.13
963 1011 0.815734 TGCTCGTACTAGAACAGGCC 59.184 55.000 0.00 0.00 0.00 5.19
964 1012 2.544069 GGATGCTCGTACTAGAACAGGC 60.544 54.545 0.00 0.00 0.00 4.85
965 1013 2.688446 TGGATGCTCGTACTAGAACAGG 59.312 50.000 0.00 0.00 0.00 4.00
966 1014 4.576216 ATGGATGCTCGTACTAGAACAG 57.424 45.455 0.00 0.00 0.00 3.16
967 1015 5.048013 CCATATGGATGCTCGTACTAGAACA 60.048 44.000 17.49 0.00 37.39 3.18
968 1016 5.047943 ACCATATGGATGCTCGTACTAGAAC 60.048 44.000 28.77 0.00 38.94 3.01
969 1017 5.077564 ACCATATGGATGCTCGTACTAGAA 58.922 41.667 28.77 0.00 38.94 2.10
970 1018 4.663334 ACCATATGGATGCTCGTACTAGA 58.337 43.478 28.77 0.00 38.94 2.43
971 1019 4.702612 AGACCATATGGATGCTCGTACTAG 59.297 45.833 28.77 0.00 38.94 2.57
972 1020 4.663334 AGACCATATGGATGCTCGTACTA 58.337 43.478 28.77 0.00 38.94 1.82
973 1021 3.501349 AGACCATATGGATGCTCGTACT 58.499 45.455 28.77 0.86 38.94 2.73
974 1022 3.944055 AGACCATATGGATGCTCGTAC 57.056 47.619 28.77 7.45 38.94 3.67
975 1023 3.554960 GCAAGACCATATGGATGCTCGTA 60.555 47.826 28.77 0.00 38.63 3.43
976 1024 2.808202 GCAAGACCATATGGATGCTCGT 60.808 50.000 28.77 10.48 38.63 4.18
977 1025 1.802960 GCAAGACCATATGGATGCTCG 59.197 52.381 28.77 12.25 38.63 5.03
978 1026 2.812591 CAGCAAGACCATATGGATGCTC 59.187 50.000 32.33 20.59 44.55 4.26
979 1027 2.440627 TCAGCAAGACCATATGGATGCT 59.559 45.455 30.85 30.85 45.95 3.79
980 1028 2.854963 TCAGCAAGACCATATGGATGC 58.145 47.619 28.77 28.66 40.41 3.91
981 1029 3.756963 CCATCAGCAAGACCATATGGATG 59.243 47.826 28.77 21.77 36.76 3.51
982 1030 3.396946 ACCATCAGCAAGACCATATGGAT 59.603 43.478 28.77 13.24 37.80 3.41
983 1031 2.779430 ACCATCAGCAAGACCATATGGA 59.221 45.455 28.77 3.15 37.80 3.41
984 1032 2.882761 CACCATCAGCAAGACCATATGG 59.117 50.000 20.68 20.68 39.80 2.74
985 1033 3.548770 ACACCATCAGCAAGACCATATG 58.451 45.455 0.00 0.00 0.00 1.78
986 1034 3.939740 ACACCATCAGCAAGACCATAT 57.060 42.857 0.00 0.00 0.00 1.78
987 1035 3.774766 AGTACACCATCAGCAAGACCATA 59.225 43.478 0.00 0.00 0.00 2.74
988 1036 2.573462 AGTACACCATCAGCAAGACCAT 59.427 45.455 0.00 0.00 0.00 3.55
989 1037 1.977854 AGTACACCATCAGCAAGACCA 59.022 47.619 0.00 0.00 0.00 4.02
990 1038 2.744202 CAAGTACACCATCAGCAAGACC 59.256 50.000 0.00 0.00 0.00 3.85
991 1039 3.433615 GTCAAGTACACCATCAGCAAGAC 59.566 47.826 0.00 0.00 0.00 3.01
992 1040 3.664107 GTCAAGTACACCATCAGCAAGA 58.336 45.455 0.00 0.00 0.00 3.02
993 1041 2.413112 CGTCAAGTACACCATCAGCAAG 59.587 50.000 0.00 0.00 0.00 4.01
994 1042 2.036604 TCGTCAAGTACACCATCAGCAA 59.963 45.455 0.00 0.00 0.00 3.91
995 1043 1.616374 TCGTCAAGTACACCATCAGCA 59.384 47.619 0.00 0.00 0.00 4.41
996 1044 2.263077 CTCGTCAAGTACACCATCAGC 58.737 52.381 0.00 0.00 0.00 4.26
997 1045 3.577649 ACTCGTCAAGTACACCATCAG 57.422 47.619 0.00 0.00 36.07 2.90
1006 1054 3.021695 CCTCCATGGTACTCGTCAAGTA 58.978 50.000 12.58 0.00 39.55 2.24
1007 1055 1.825474 CCTCCATGGTACTCGTCAAGT 59.175 52.381 12.58 0.00 42.33 3.16
1008 1056 1.471676 GCCTCCATGGTACTCGTCAAG 60.472 57.143 12.58 0.00 38.35 3.02
1009 1057 0.535335 GCCTCCATGGTACTCGTCAA 59.465 55.000 12.58 0.00 38.35 3.18
1010 1058 1.663379 CGCCTCCATGGTACTCGTCA 61.663 60.000 12.58 0.00 38.35 4.35
1011 1059 1.065928 CGCCTCCATGGTACTCGTC 59.934 63.158 12.58 0.00 38.35 4.20
1012 1060 2.423898 CCGCCTCCATGGTACTCGT 61.424 63.158 12.58 0.00 38.35 4.18
1013 1061 1.956629 AACCGCCTCCATGGTACTCG 61.957 60.000 12.58 10.99 37.54 4.18
1014 1062 0.179081 GAACCGCCTCCATGGTACTC 60.179 60.000 12.58 0.00 37.54 2.59
1015 1063 1.905512 GAACCGCCTCCATGGTACT 59.094 57.895 12.58 0.00 37.54 2.73
1016 1064 1.520787 CGAACCGCCTCCATGGTAC 60.521 63.158 12.58 1.34 37.54 3.34
1017 1065 2.727392 CCGAACCGCCTCCATGGTA 61.727 63.158 12.58 0.00 37.54 3.25
1018 1066 4.096003 CCGAACCGCCTCCATGGT 62.096 66.667 12.58 0.00 41.20 3.55
1019 1067 4.096003 ACCGAACCGCCTCCATGG 62.096 66.667 4.97 4.97 39.35 3.66
1020 1068 2.819595 CACCGAACCGCCTCCATG 60.820 66.667 0.00 0.00 0.00 3.66
1021 1069 4.778143 GCACCGAACCGCCTCCAT 62.778 66.667 0.00 0.00 0.00 3.41
1048 1096 4.796231 CGTCGCTGGACCTTCCCG 62.796 72.222 0.00 0.00 40.17 5.14
1059 1107 2.816958 CCATCTTGCTGCGTCGCT 60.817 61.111 19.50 0.00 0.00 4.93
1060 1108 2.806856 CTCCATCTTGCTGCGTCGC 61.807 63.158 11.10 11.10 0.00 5.19
1114 1162 2.759973 TAGCCTCACCGGAGCCAG 60.760 66.667 9.46 0.00 39.96 4.85
1131 1179 3.790437 CGCCACCCCATGAGCTCT 61.790 66.667 16.19 0.00 0.00 4.09
1149 1197 1.144936 CTCCTTCGTCCATGGCCTC 59.855 63.158 6.96 0.00 0.00 4.70
1186 1234 0.106318 GCCTTCCCTGCATCATCCTT 60.106 55.000 0.00 0.00 0.00 3.36
1223 1278 1.380515 TGCTCCCTTCTCCTCCTCG 60.381 63.158 0.00 0.00 0.00 4.63
1267 1322 3.636231 CACCCGCTGACCTTCCCA 61.636 66.667 0.00 0.00 0.00 4.37
1416 1471 0.903454 TCCCTCGTCCTTCTCCCAAC 60.903 60.000 0.00 0.00 0.00 3.77
1460 1515 3.446873 CGATCCCTATCTCCCTTGATCTG 59.553 52.174 0.00 0.00 0.00 2.90
1466 1521 0.117340 CCCCGATCCCTATCTCCCTT 59.883 60.000 0.00 0.00 0.00 3.95
1525 1580 2.227089 CTCCTCGTTCCCTTCCACCG 62.227 65.000 0.00 0.00 0.00 4.94
1548 1603 1.144913 CTCCCTCTCCTCTCGATCCTT 59.855 57.143 0.00 0.00 0.00 3.36
1549 1604 0.771127 CTCCCTCTCCTCTCGATCCT 59.229 60.000 0.00 0.00 0.00 3.24
1589 1644 3.243724 CAGCTATTCCTAACCCTAGGCT 58.756 50.000 2.05 0.00 44.13 4.58
1617 1672 3.884774 AGTTGCACCGAGGCCCAA 61.885 61.111 0.00 0.00 0.00 4.12
1672 1727 7.238710 GGAGAATAGTCTAGGAGGAGAGAAAT 58.761 42.308 0.00 0.00 32.80 2.17
1674 1729 5.073965 GGGAGAATAGTCTAGGAGGAGAGAA 59.926 48.000 0.00 0.00 32.80 2.87
1682 1737 7.592736 TGTTAATCAGGGAGAATAGTCTAGGA 58.407 38.462 0.00 0.00 32.80 2.94
1832 1887 2.159430 TGTGTTCGAATGCAATCCTTCG 59.841 45.455 12.77 12.77 44.18 3.79
1942 1999 8.785946 CAAACTTTGCCCATAATTTCTTTCATT 58.214 29.630 0.00 0.00 0.00 2.57
2105 2191 9.850628 CTAAATAAATCGTATGGATCTTCGGTA 57.149 33.333 0.00 0.00 33.02 4.02
2209 2323 2.823154 TCCATGATTTCCGGGTTTTCAC 59.177 45.455 0.00 0.00 0.00 3.18
2355 2469 0.548510 GGGCTGCAAAGAGATAGGGT 59.451 55.000 0.50 0.00 0.00 4.34
2360 2474 0.964358 GTGCTGGGCTGCAAAGAGAT 60.964 55.000 0.50 0.00 45.12 2.75
2441 2555 0.544697 AGGTTTTCACCCACACGTCT 59.455 50.000 0.00 0.00 45.63 4.18
2442 2556 0.942252 GAGGTTTTCACCCACACGTC 59.058 55.000 0.00 0.00 45.63 4.34
2443 2557 0.253610 TGAGGTTTTCACCCACACGT 59.746 50.000 0.00 0.00 45.63 4.49
2452 2566 3.888930 GTCCAAATGAGGTGAGGTTTTCA 59.111 43.478 0.00 0.00 0.00 2.69
2459 2573 2.836981 AGGAGAGTCCAAATGAGGTGAG 59.163 50.000 0.00 0.00 39.61 3.51
2460 2574 2.907892 AGGAGAGTCCAAATGAGGTGA 58.092 47.619 0.00 0.00 39.61 4.02
2480 2594 5.903589 GCATATTTATAGGTAGGGGGAGCTA 59.096 44.000 0.00 0.00 34.11 3.32
2515 2630 4.797275 GCTTGGGTTTGGACTGAGAATTTG 60.797 45.833 0.00 0.00 0.00 2.32
2524 2639 0.178990 GTGGAGCTTGGGTTTGGACT 60.179 55.000 0.00 0.00 0.00 3.85
3372 3733 0.037326 AGCGCAGAAATCGAGGTTCA 60.037 50.000 11.47 0.00 0.00 3.18
3391 3752 0.032515 TCGCAGATCTAGGGTTCCCA 60.033 55.000 10.73 0.00 0.00 4.37
3447 3814 0.108520 CATGGCAAAGATGGGCACAC 60.109 55.000 0.00 0.00 44.01 3.82
3480 3847 1.327507 GCGCAAATTGGAGAAACGAC 58.672 50.000 0.30 0.00 0.00 4.34
3485 3852 6.822667 ATATCATATGCGCAAATTGGAGAA 57.177 33.333 17.11 1.53 0.00 2.87
3486 3853 7.042523 CGATATATCATATGCGCAAATTGGAGA 60.043 37.037 17.11 5.92 0.00 3.71
3549 3916 5.119931 TGGACAGTAACATGCATGAAAAC 57.880 39.130 32.75 23.61 0.00 2.43
3669 4036 3.068165 ACATGATGCTCAAAGGATGCATG 59.932 43.478 2.46 0.00 45.90 4.06
3722 4090 4.862641 ACAAGGCTTCCACCACTATAAT 57.137 40.909 0.00 0.00 0.00 1.28
3734 4102 6.749118 CACAGCTCATAAAAATACAAGGCTTC 59.251 38.462 0.00 0.00 0.00 3.86
3808 4176 3.882888 TGGCAGAAAAACTAAGTGTCTGG 59.117 43.478 0.00 0.00 36.93 3.86
3848 4217 6.324819 GCAACAAGTCAACATAGCAACATAT 58.675 36.000 0.00 0.00 0.00 1.78
3938 4308 4.736611 AACCAGAGGCATGAATGGATAT 57.263 40.909 11.46 0.00 36.62 1.63
4000 4370 4.928615 GCCAGCAACAACATTTAGCATAAA 59.071 37.500 0.00 0.00 0.00 1.40
4003 4373 2.299582 TGCCAGCAACAACATTTAGCAT 59.700 40.909 0.00 0.00 0.00 3.79
4055 4425 4.855388 GTGCATGAATCACTAGCAAAACAG 59.145 41.667 8.14 0.00 36.91 3.16
4071 4441 3.346315 CACAAGTTCATAGGGTGCATGA 58.654 45.455 0.00 0.00 0.00 3.07
4104 4474 8.386606 CAGTAAGAAGACACATTTATGAAGCTC 58.613 37.037 0.00 0.00 0.00 4.09
4160 4530 1.015109 GCTCATGCCACTCATCACAG 58.985 55.000 0.00 0.00 31.79 3.66
4165 4535 0.323087 TGCAAGCTCATGCCACTCAT 60.323 50.000 7.90 0.00 45.83 2.90
4191 4561 4.591929 TGGCAGAAACAGATTCATGATGA 58.408 39.130 0.00 0.00 40.72 2.92
4225 4595 7.602644 TGATATGAACAGTTTCAGACTTGGTAC 59.397 37.037 0.00 0.00 45.07 3.34
4226 4596 7.602644 GTGATATGAACAGTTTCAGACTTGGTA 59.397 37.037 0.00 0.00 45.07 3.25
4227 4597 6.428159 GTGATATGAACAGTTTCAGACTTGGT 59.572 38.462 0.00 0.00 45.07 3.67
4343 4716 0.668401 GGCAAACAAGAGCATGGCAC 60.668 55.000 0.00 0.00 38.16 5.01
4366 4741 7.089538 CCAAACAACATGCTACAACATCATAA 58.910 34.615 0.00 0.00 0.00 1.90
4371 4746 4.935352 ACCAAACAACATGCTACAACAT 57.065 36.364 0.00 0.00 0.00 2.71
4373 4748 4.023193 AGCTACCAAACAACATGCTACAAC 60.023 41.667 0.00 0.00 0.00 3.32
4412 4787 6.321717 ACTAAACATGGCATAAACAACATCG 58.678 36.000 0.00 0.00 0.00 3.84
4528 4905 6.370994 ACAAGTGAAGCTCTACAAATCATGAG 59.629 38.462 0.09 0.00 0.00 2.90
4793 5172 7.648343 TGCACTGCATATGGTACTCCAGAAG 62.648 48.000 4.56 2.69 39.52 2.85
4798 5177 2.213499 GTGCACTGCATATGGTACTCC 58.787 52.381 10.32 0.00 41.91 3.85
4813 5193 4.914291 GCAAGGTACAACGTGCAC 57.086 55.556 6.82 6.82 43.78 4.57
4952 5333 6.604396 TCCTCGTAAACATACTCAACAGGATA 59.396 38.462 0.00 0.00 0.00 2.59
5010 5391 4.712051 TCAGGGGTAATGATCATCTTGG 57.288 45.455 9.06 0.00 0.00 3.61
5335 5775 3.056328 GGCGGCAAGAGTGGAACC 61.056 66.667 3.07 0.00 37.80 3.62
5531 6005 4.079154 GGGGAGGGGTCTTGAATTAAGATT 60.079 45.833 0.00 0.00 46.50 2.40
5699 6180 1.894466 CTGATGTGCCAACAAATCCCA 59.106 47.619 0.00 0.00 39.48 4.37
5784 6268 3.110293 TCCTTCTCCCGGAATAACTCA 57.890 47.619 0.73 0.00 33.01 3.41
5786 6270 6.928817 AGGATATTCCTTCTCCCGGAATAACT 60.929 42.308 0.73 12.03 46.91 2.24
5887 6373 0.107214 CCCATCTGCCACATAACCGT 60.107 55.000 0.00 0.00 0.00 4.83
5912 6399 8.533657 TCAAGTTCTCTACAACCGGATATTAAA 58.466 33.333 9.46 0.00 0.00 1.52
6026 6521 6.643770 TCCTGAACTACTTACGTTCAAACATC 59.356 38.462 0.00 0.00 46.95 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.