Multiple sequence alignment - TraesCS1A01G120900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G120900 chr1A 100.000 2909 0 0 1 2909 133174941 133172033 0.000000e+00 5373
1 TraesCS1A01G120900 chr1A 100.000 1700 0 0 3183 4882 133171759 133170060 0.000000e+00 3140
2 TraesCS1A01G120900 chr1D 96.683 2050 31 12 889 2909 121407818 121405777 0.000000e+00 3374
3 TraesCS1A01G120900 chr1D 97.566 904 18 2 3183 4085 121405725 121404825 0.000000e+00 1544
4 TraesCS1A01G120900 chr1D 92.471 425 25 3 479 897 375946456 375946033 6.990000e-168 601
5 TraesCS1A01G120900 chr1D 94.634 205 9 2 80 284 334455518 334455720 2.840000e-82 316
6 TraesCS1A01G120900 chr1D 90.110 182 15 1 3481 3662 146656076 146656254 2.940000e-57 233
7 TraesCS1A01G120900 chr1D 88.462 130 7 2 353 482 121407930 121407809 3.040000e-32 150
8 TraesCS1A01G120900 chr1D 90.361 83 4 3 4082 4164 121404786 121404708 6.680000e-19 106
9 TraesCS1A01G120900 chr1B 92.496 2039 96 16 890 2909 185227840 185225840 0.000000e+00 2865
10 TraesCS1A01G120900 chr1B 95.238 441 5 2 3647 4085 185225206 185224780 0.000000e+00 684
11 TraesCS1A01G120900 chr1B 97.619 294 6 1 3192 3484 185225496 185225203 2.030000e-138 503
12 TraesCS1A01G120900 chr1B 92.344 209 13 3 80 287 363450988 363450782 1.330000e-75 294
13 TraesCS1A01G120900 chr1B 89.286 168 18 0 2708 2875 217286310 217286477 1.380000e-50 211
14 TraesCS1A01G120900 chr5D 98.246 570 5 3 4315 4882 335123045 335123611 0.000000e+00 992
15 TraesCS1A01G120900 chr5D 92.683 205 12 3 80 284 53873822 53874023 4.780000e-75 292
16 TraesCS1A01G120900 chr5D 94.798 173 6 1 3481 3653 5112186 5112355 2.900000e-67 267
17 TraesCS1A01G120900 chr5D 85.306 245 11 2 4165 4384 496223878 496223634 3.800000e-56 230
18 TraesCS1A01G120900 chr5D 94.853 136 7 0 4747 4882 496223623 496223488 3.830000e-51 213
19 TraesCS1A01G120900 chr5D 94.161 137 7 1 4165 4300 335122561 335122697 1.780000e-49 207
20 TraesCS1A01G120900 chrUn 94.915 413 15 4 483 890 308630111 308629700 4.120000e-180 641
21 TraesCS1A01G120900 chr2A 94.915 413 15 4 483 890 765449724 765449313 4.120000e-180 641
22 TraesCS1A01G120900 chr2A 94.286 175 8 2 3481 3655 120531247 120531075 2.900000e-67 267
23 TraesCS1A01G120900 chr2A 94.220 173 7 1 3480 3652 389221006 389221175 1.350000e-65 261
24 TraesCS1A01G120900 chr6A 93.735 431 18 5 468 893 578665817 578665391 5.330000e-179 638
25 TraesCS1A01G120900 chr6A 93.571 420 19 4 484 895 30376473 30376892 1.930000e-173 619
26 TraesCS1A01G120900 chr6A 93.137 204 12 2 80 283 49742554 49742353 1.030000e-76 298
27 TraesCS1A01G120900 chr6A 95.294 170 5 1 3480 3649 458217875 458217709 2.900000e-67 267
28 TraesCS1A01G120900 chr4A 94.686 414 15 5 483 891 45411952 45412363 1.920000e-178 636
29 TraesCS1A01G120900 chr4A 93.204 206 12 2 80 285 32409787 32409584 7.940000e-78 302
30 TraesCS1A01G120900 chr4A 92.233 206 14 2 80 285 677125234 677125437 1.720000e-74 291
31 TraesCS1A01G120900 chr3A 93.932 412 18 3 485 890 308312016 308311606 2.500000e-172 616
32 TraesCS1A01G120900 chr3A 90.625 160 15 0 2711 2870 466795880 466795721 3.830000e-51 213
33 TraesCS1A01G120900 chr5A 93.253 415 22 2 483 891 564386636 564386222 1.500000e-169 606
34 TraesCS1A01G120900 chr7A 93.046 417 20 4 483 892 276144944 276144530 6.990000e-168 601
35 TraesCS1A01G120900 chr7A 92.718 206 13 2 80 285 643253174 643253377 3.690000e-76 296
36 TraesCS1A01G120900 chr7A 89.691 194 12 6 3481 3671 156968576 156968764 1.760000e-59 241
37 TraesCS1A01G120900 chr3D 93.532 201 11 2 80 280 31099102 31099300 1.030000e-76 298
38 TraesCS1A01G120900 chr3D 95.294 170 4 2 3481 3650 450884459 450884624 2.900000e-67 267
39 TraesCS1A01G120900 chr3D 93.750 176 8 1 3480 3655 369651895 369651723 1.350000e-65 261
40 TraesCS1A01G120900 chr3D 93.103 174 9 1 3481 3654 550509432 550509602 8.110000e-63 252
41 TraesCS1A01G120900 chr3D 91.195 159 14 0 2711 2869 347591123 347590965 2.960000e-52 217
42 TraesCS1A01G120900 chr4B 92.683 205 12 3 80 284 168151739 168151940 4.780000e-75 292
43 TraesCS1A01G120900 chr7D 95.322 171 5 2 3480 3650 164852759 164852926 8.050000e-68 268
44 TraesCS1A01G120900 chr7D 91.250 160 13 1 2711 2870 236827538 236827380 2.960000e-52 217
45 TraesCS1A01G120900 chr6D 94.675 169 6 1 3481 3649 218407374 218407209 4.850000e-65 259
46 TraesCS1A01G120900 chr7B 85.425 247 34 2 4622 4867 682921104 682921349 6.270000e-64 255
47 TraesCS1A01G120900 chr3B 90.909 187 14 1 3480 3666 341964526 341964709 1.050000e-61 248
48 TraesCS1A01G120900 chr3B 91.304 184 10 5 3481 3664 540372951 540373128 3.770000e-61 246
49 TraesCS1A01G120900 chr3B 89.881 168 15 1 2708 2875 577522680 577522515 1.060000e-51 215
50 TraesCS1A01G120900 chr6B 90.323 186 12 4 3481 3664 29352528 29352347 6.320000e-59 239
51 TraesCS1A01G120900 chr5B 91.813 171 11 1 3480 3650 391768754 391768921 8.170000e-58 235
52 TraesCS1A01G120900 chr5B 89.062 192 14 4 3481 3671 70795826 70796011 1.060000e-56 231
53 TraesCS1A01G120900 chr2D 90.361 166 15 1 2711 2876 388833821 388833657 2.960000e-52 217
54 TraesCS1A01G120900 chr2D 91.195 159 13 1 2711 2869 98988229 98988072 1.060000e-51 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G120900 chr1A 133170060 133174941 4881 True 4256.500000 5373 100.000000 1 4882 2 chr1A.!!$R1 4881
1 TraesCS1A01G120900 chr1D 121404708 121407930 3222 True 1293.500000 3374 93.268000 353 4164 4 chr1D.!!$R2 3811
2 TraesCS1A01G120900 chr1B 185224780 185227840 3060 True 1350.666667 2865 95.117667 890 4085 3 chr1B.!!$R2 3195
3 TraesCS1A01G120900 chr5D 335122561 335123611 1050 False 599.500000 992 96.203500 4165 4882 2 chr5D.!!$F3 717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 867 0.029300 CAAGTCACACGGTGCAAAGG 59.971 55.000 8.30 0.00 32.98 3.11 F
886 887 0.253894 TGCATGTCACCTGATCCCTG 59.746 55.000 0.00 0.00 0.00 4.45 F
887 888 0.254178 GCATGTCACCTGATCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00 F
2050 2077 0.537188 ATTCTAGCGACACCCTGTGG 59.463 55.000 0.00 0.00 37.94 4.17 F
2102 2129 0.039618 GGAAGAAATGGGAGGTGGCA 59.960 55.000 0.00 0.00 0.00 4.92 F
2860 2903 2.306847 TGGGACTGAAAGGCTTTGTTC 58.693 47.619 18.79 8.67 46.21 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2003 2029 0.108138 CGGTGGTGATGAGTTCCTCC 60.108 60.000 0.0 0.0 0.00 4.30 R
2050 2077 0.391130 TCACTGGCTGTAATCACCGC 60.391 55.000 0.0 0.0 34.41 5.68 R
2102 2129 0.616679 TTACTGGCCGAACCCTAGCT 60.617 55.000 0.0 0.0 37.83 3.32 R
3633 3744 1.622312 ACAAAGTACTCCCTCCGTTCC 59.378 52.381 0.0 0.0 0.00 3.62 R
3830 3941 4.041567 TCAGGCTTGAGAACTCCAACATAA 59.958 41.667 0.0 0.0 0.00 1.90 R
4216 4372 1.205966 CCCAAATCCCCATGCACATT 58.794 50.000 0.0 0.0 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.733337 CGCATGAGTTATTAGCTTCCCT 58.267 45.455 0.00 0.00 0.00 4.20
22 23 3.743396 CGCATGAGTTATTAGCTTCCCTC 59.257 47.826 0.00 0.00 0.00 4.30
23 24 4.068599 GCATGAGTTATTAGCTTCCCTCC 58.931 47.826 0.00 0.00 0.00 4.30
24 25 4.646572 CATGAGTTATTAGCTTCCCTCCC 58.353 47.826 0.00 0.00 0.00 4.30
25 26 3.046374 TGAGTTATTAGCTTCCCTCCCC 58.954 50.000 0.00 0.00 0.00 4.81
26 27 2.372504 GAGTTATTAGCTTCCCTCCCCC 59.627 54.545 0.00 0.00 0.00 5.40
87 88 4.404098 CCGGGCCTGGTGGTGTAC 62.404 72.222 23.90 0.00 35.27 2.90
88 89 3.632080 CGGGCCTGGTGGTGTACA 61.632 66.667 2.57 0.00 35.27 2.90
89 90 2.840576 GGGCCTGGTGGTGTACAA 59.159 61.111 0.84 0.00 35.27 2.41
90 91 1.303317 GGGCCTGGTGGTGTACAAG 60.303 63.158 0.84 0.00 35.27 3.16
91 92 1.971695 GGCCTGGTGGTGTACAAGC 60.972 63.158 0.00 0.00 35.27 4.01
92 93 1.228124 GCCTGGTGGTGTACAAGCA 60.228 57.895 0.00 0.00 35.27 3.91
93 94 0.609131 GCCTGGTGGTGTACAAGCAT 60.609 55.000 0.00 0.00 38.84 3.79
94 95 1.167851 CCTGGTGGTGTACAAGCATG 58.832 55.000 0.00 0.00 38.84 4.06
95 96 1.271325 CCTGGTGGTGTACAAGCATGA 60.271 52.381 0.00 0.00 38.84 3.07
96 97 2.079158 CTGGTGGTGTACAAGCATGAG 58.921 52.381 0.00 0.00 38.84 2.90
97 98 1.271325 TGGTGGTGTACAAGCATGAGG 60.271 52.381 0.00 0.00 38.84 3.86
98 99 1.003118 GGTGGTGTACAAGCATGAGGA 59.997 52.381 0.00 0.00 38.84 3.71
99 100 2.350522 GTGGTGTACAAGCATGAGGAG 58.649 52.381 0.00 0.00 38.84 3.69
100 101 1.977854 TGGTGTACAAGCATGAGGAGT 59.022 47.619 0.00 0.00 0.00 3.85
101 102 2.371841 TGGTGTACAAGCATGAGGAGTT 59.628 45.455 0.00 0.00 0.00 3.01
102 103 3.580895 TGGTGTACAAGCATGAGGAGTTA 59.419 43.478 0.00 0.00 0.00 2.24
103 104 4.225042 TGGTGTACAAGCATGAGGAGTTAT 59.775 41.667 0.00 0.00 0.00 1.89
104 105 5.186198 GGTGTACAAGCATGAGGAGTTATT 58.814 41.667 0.00 0.00 0.00 1.40
105 106 5.065218 GGTGTACAAGCATGAGGAGTTATTG 59.935 44.000 0.00 0.00 0.00 1.90
106 107 5.643777 GTGTACAAGCATGAGGAGTTATTGT 59.356 40.000 0.00 0.00 34.15 2.71
107 108 5.643348 TGTACAAGCATGAGGAGTTATTGTG 59.357 40.000 0.00 0.00 32.20 3.33
108 109 4.655963 ACAAGCATGAGGAGTTATTGTGT 58.344 39.130 0.00 0.00 0.00 3.72
109 110 4.456911 ACAAGCATGAGGAGTTATTGTGTG 59.543 41.667 0.00 0.00 0.00 3.82
110 111 4.292186 AGCATGAGGAGTTATTGTGTGT 57.708 40.909 0.00 0.00 0.00 3.72
111 112 4.655963 AGCATGAGGAGTTATTGTGTGTT 58.344 39.130 0.00 0.00 0.00 3.32
112 113 5.804639 AGCATGAGGAGTTATTGTGTGTTA 58.195 37.500 0.00 0.00 0.00 2.41
113 114 5.877012 AGCATGAGGAGTTATTGTGTGTTAG 59.123 40.000 0.00 0.00 0.00 2.34
114 115 5.065218 GCATGAGGAGTTATTGTGTGTTAGG 59.935 44.000 0.00 0.00 0.00 2.69
115 116 6.406370 CATGAGGAGTTATTGTGTGTTAGGA 58.594 40.000 0.00 0.00 0.00 2.94
116 117 6.037786 TGAGGAGTTATTGTGTGTTAGGAG 57.962 41.667 0.00 0.00 0.00 3.69
117 118 5.046591 TGAGGAGTTATTGTGTGTTAGGAGG 60.047 44.000 0.00 0.00 0.00 4.30
118 119 4.225267 AGGAGTTATTGTGTGTTAGGAGGG 59.775 45.833 0.00 0.00 0.00 4.30
119 120 4.019591 GGAGTTATTGTGTGTTAGGAGGGT 60.020 45.833 0.00 0.00 0.00 4.34
120 121 5.514310 GGAGTTATTGTGTGTTAGGAGGGTT 60.514 44.000 0.00 0.00 0.00 4.11
121 122 5.948842 AGTTATTGTGTGTTAGGAGGGTTT 58.051 37.500 0.00 0.00 0.00 3.27
122 123 5.768164 AGTTATTGTGTGTTAGGAGGGTTTG 59.232 40.000 0.00 0.00 0.00 2.93
123 124 2.649531 TGTGTGTTAGGAGGGTTTGG 57.350 50.000 0.00 0.00 0.00 3.28
124 125 1.244816 GTGTGTTAGGAGGGTTTGGC 58.755 55.000 0.00 0.00 0.00 4.52
125 126 0.250553 TGTGTTAGGAGGGTTTGGCG 60.251 55.000 0.00 0.00 0.00 5.69
126 127 0.958876 GTGTTAGGAGGGTTTGGCGG 60.959 60.000 0.00 0.00 0.00 6.13
127 128 1.378119 GTTAGGAGGGTTTGGCGGG 60.378 63.158 0.00 0.00 0.00 6.13
128 129 1.848895 TTAGGAGGGTTTGGCGGGT 60.849 57.895 0.00 0.00 0.00 5.28
129 130 1.428718 TTAGGAGGGTTTGGCGGGTT 61.429 55.000 0.00 0.00 0.00 4.11
130 131 2.132089 TAGGAGGGTTTGGCGGGTTG 62.132 60.000 0.00 0.00 0.00 3.77
131 132 3.680786 GAGGGTTTGGCGGGTTGC 61.681 66.667 0.00 0.00 45.38 4.17
148 149 3.941188 CACGTGTGCTCCTGGGGT 61.941 66.667 7.58 0.00 0.00 4.95
149 150 3.626924 ACGTGTGCTCCTGGGGTC 61.627 66.667 0.00 0.00 0.00 4.46
150 151 3.625897 CGTGTGCTCCTGGGGTCA 61.626 66.667 0.00 0.00 0.00 4.02
151 152 2.959484 CGTGTGCTCCTGGGGTCAT 61.959 63.158 0.00 0.00 0.00 3.06
152 153 1.377725 GTGTGCTCCTGGGGTCATG 60.378 63.158 0.00 0.00 0.00 3.07
153 154 1.538629 TGTGCTCCTGGGGTCATGA 60.539 57.895 0.00 0.00 0.00 3.07
154 155 0.915872 TGTGCTCCTGGGGTCATGAT 60.916 55.000 0.00 0.00 0.00 2.45
155 156 0.257039 GTGCTCCTGGGGTCATGATT 59.743 55.000 0.00 0.00 0.00 2.57
156 157 0.256752 TGCTCCTGGGGTCATGATTG 59.743 55.000 0.00 0.00 0.00 2.67
157 158 0.466922 GCTCCTGGGGTCATGATTGG 60.467 60.000 0.00 0.00 0.00 3.16
158 159 0.921896 CTCCTGGGGTCATGATTGGT 59.078 55.000 0.00 0.00 0.00 3.67
159 160 0.625316 TCCTGGGGTCATGATTGGTG 59.375 55.000 0.00 0.00 0.00 4.17
160 161 0.625316 CCTGGGGTCATGATTGGTGA 59.375 55.000 0.00 0.00 0.00 4.02
161 162 1.409241 CCTGGGGTCATGATTGGTGAG 60.409 57.143 0.00 0.00 0.00 3.51
162 163 1.283029 CTGGGGTCATGATTGGTGAGT 59.717 52.381 0.00 0.00 0.00 3.41
163 164 2.505407 CTGGGGTCATGATTGGTGAGTA 59.495 50.000 0.00 0.00 0.00 2.59
164 165 2.916269 TGGGGTCATGATTGGTGAGTAA 59.084 45.455 0.00 0.00 0.00 2.24
165 166 3.279434 GGGGTCATGATTGGTGAGTAAC 58.721 50.000 0.00 0.00 0.00 2.50
179 180 6.867662 GGTGAGTAACCCAATTATGATCTG 57.132 41.667 0.00 0.00 44.02 2.90
180 181 6.591935 GGTGAGTAACCCAATTATGATCTGA 58.408 40.000 0.00 0.00 44.02 3.27
181 182 7.227156 GGTGAGTAACCCAATTATGATCTGAT 58.773 38.462 0.00 0.00 44.02 2.90
182 183 7.721399 GGTGAGTAACCCAATTATGATCTGATT 59.279 37.037 0.00 0.00 44.02 2.57
183 184 8.562892 GTGAGTAACCCAATTATGATCTGATTG 58.437 37.037 0.00 2.20 32.14 2.67
184 185 8.274322 TGAGTAACCCAATTATGATCTGATTGT 58.726 33.333 12.19 0.00 30.75 2.71
185 186 9.778741 GAGTAACCCAATTATGATCTGATTGTA 57.221 33.333 12.19 0.00 30.75 2.41
189 190 9.745018 AACCCAATTATGATCTGATTGTATAGG 57.255 33.333 12.19 9.57 30.75 2.57
190 191 8.894592 ACCCAATTATGATCTGATTGTATAGGT 58.105 33.333 12.19 9.98 30.75 3.08
191 192 9.745018 CCCAATTATGATCTGATTGTATAGGTT 57.255 33.333 12.19 0.00 30.75 3.50
197 198 8.854614 ATGATCTGATTGTATAGGTTTTAGCC 57.145 34.615 0.00 0.00 0.00 3.93
198 199 7.224297 TGATCTGATTGTATAGGTTTTAGCCC 58.776 38.462 0.00 0.00 0.00 5.19
199 200 5.607477 TCTGATTGTATAGGTTTTAGCCCG 58.393 41.667 0.00 0.00 0.00 6.13
200 201 4.710324 TGATTGTATAGGTTTTAGCCCGG 58.290 43.478 0.00 0.00 0.00 5.73
201 202 4.164604 TGATTGTATAGGTTTTAGCCCGGT 59.835 41.667 0.00 0.00 0.00 5.28
202 203 4.573021 TTGTATAGGTTTTAGCCCGGTT 57.427 40.909 0.00 0.00 0.00 4.44
203 204 4.573021 TGTATAGGTTTTAGCCCGGTTT 57.427 40.909 0.00 0.00 0.00 3.27
204 205 4.920999 TGTATAGGTTTTAGCCCGGTTTT 58.079 39.130 0.00 0.00 0.00 2.43
205 206 4.943093 TGTATAGGTTTTAGCCCGGTTTTC 59.057 41.667 0.00 0.00 0.00 2.29
206 207 1.624336 AGGTTTTAGCCCGGTTTTCC 58.376 50.000 0.00 0.00 0.00 3.13
220 221 2.938451 GGTTTTCCGTAGATTAACCGGG 59.062 50.000 6.32 0.00 41.98 5.73
221 222 2.314323 TTTCCGTAGATTAACCGGGC 57.686 50.000 6.32 0.00 41.98 6.13
222 223 1.193323 TTCCGTAGATTAACCGGGCA 58.807 50.000 6.32 0.00 41.98 5.36
223 224 1.193323 TCCGTAGATTAACCGGGCAA 58.807 50.000 6.32 0.00 41.98 4.52
224 225 1.764134 TCCGTAGATTAACCGGGCAAT 59.236 47.619 6.32 4.15 41.98 3.56
225 226 2.171027 TCCGTAGATTAACCGGGCAATT 59.829 45.455 6.32 0.00 41.98 2.32
226 227 2.546789 CCGTAGATTAACCGGGCAATTC 59.453 50.000 6.32 0.00 38.09 2.17
227 228 3.463944 CGTAGATTAACCGGGCAATTCT 58.536 45.455 6.32 3.87 0.00 2.40
228 229 3.493503 CGTAGATTAACCGGGCAATTCTC 59.506 47.826 6.32 0.00 0.00 2.87
229 230 3.933861 AGATTAACCGGGCAATTCTCT 57.066 42.857 6.32 0.00 0.00 3.10
230 231 4.236527 AGATTAACCGGGCAATTCTCTT 57.763 40.909 6.32 0.00 0.00 2.85
231 232 4.200092 AGATTAACCGGGCAATTCTCTTC 58.800 43.478 6.32 0.00 0.00 2.87
232 233 3.713826 TTAACCGGGCAATTCTCTTCT 57.286 42.857 6.32 0.00 0.00 2.85
233 234 2.586648 AACCGGGCAATTCTCTTCTT 57.413 45.000 6.32 0.00 0.00 2.52
234 235 2.115343 ACCGGGCAATTCTCTTCTTC 57.885 50.000 6.32 0.00 0.00 2.87
235 236 1.630878 ACCGGGCAATTCTCTTCTTCT 59.369 47.619 6.32 0.00 0.00 2.85
236 237 2.040412 ACCGGGCAATTCTCTTCTTCTT 59.960 45.455 6.32 0.00 0.00 2.52
237 238 3.263425 ACCGGGCAATTCTCTTCTTCTTA 59.737 43.478 6.32 0.00 0.00 2.10
238 239 4.261801 CCGGGCAATTCTCTTCTTCTTAA 58.738 43.478 0.00 0.00 0.00 1.85
239 240 4.884164 CCGGGCAATTCTCTTCTTCTTAAT 59.116 41.667 0.00 0.00 0.00 1.40
240 241 5.358160 CCGGGCAATTCTCTTCTTCTTAATT 59.642 40.000 0.00 0.00 0.00 1.40
241 242 6.542370 CCGGGCAATTCTCTTCTTCTTAATTA 59.458 38.462 0.00 0.00 0.00 1.40
242 243 7.067008 CCGGGCAATTCTCTTCTTCTTAATTAA 59.933 37.037 0.00 0.00 0.00 1.40
243 244 8.624776 CGGGCAATTCTCTTCTTCTTAATTAAT 58.375 33.333 0.00 0.00 0.00 1.40
244 245 9.958234 GGGCAATTCTCTTCTTCTTAATTAATC 57.042 33.333 0.00 0.00 0.00 1.75
251 252 9.587772 TCTCTTCTTCTTAATTAATCAACGAGG 57.412 33.333 0.00 0.00 0.00 4.63
252 253 9.372369 CTCTTCTTCTTAATTAATCAACGAGGT 57.628 33.333 0.00 0.00 0.00 3.85
275 276 8.605354 GGTAATTTATTTTACCTTCCGTTTCG 57.395 34.615 6.21 0.00 45.12 3.46
276 277 8.450180 GGTAATTTATTTTACCTTCCGTTTCGA 58.550 33.333 6.21 0.00 45.12 3.71
277 278 9.824534 GTAATTTATTTTACCTTCCGTTTCGAA 57.175 29.630 0.00 0.00 0.00 3.71
279 280 9.747293 AATTTATTTTACCTTCCGTTTCGAAAA 57.253 25.926 13.10 0.00 0.00 2.29
280 281 9.747293 ATTTATTTTACCTTCCGTTTCGAAAAA 57.253 25.926 13.10 2.65 0.00 1.94
308 309 9.620259 AAAATCTCTTGTTGTAACTCTTCTTCT 57.380 29.630 0.00 0.00 0.00 2.85
312 313 9.078990 TCTCTTGTTGTAACTCTTCTTCTATCA 57.921 33.333 0.00 0.00 0.00 2.15
313 314 9.698309 CTCTTGTTGTAACTCTTCTTCTATCAA 57.302 33.333 0.00 0.00 0.00 2.57
316 317 9.778741 TTGTTGTAACTCTTCTTCTATCAATGT 57.221 29.630 0.00 0.00 0.00 2.71
329 330 9.265901 TCTTCTATCAATGTAAAGATAAGCAGC 57.734 33.333 0.00 0.00 0.00 5.25
330 331 9.270640 CTTCTATCAATGTAAAGATAAGCAGCT 57.729 33.333 0.00 0.00 0.00 4.24
331 332 9.618890 TTCTATCAATGTAAAGATAAGCAGCTT 57.381 29.630 13.46 13.46 29.66 3.74
332 333 9.049523 TCTATCAATGTAAAGATAAGCAGCTTG 57.950 33.333 18.54 0.00 28.82 4.01
333 334 7.636150 ATCAATGTAAAGATAAGCAGCTTGT 57.364 32.000 18.54 11.50 28.82 3.16
334 335 7.452880 TCAATGTAAAGATAAGCAGCTTGTT 57.547 32.000 18.54 4.98 28.82 2.83
335 336 7.885297 TCAATGTAAAGATAAGCAGCTTGTTT 58.115 30.769 18.54 15.44 28.82 2.83
336 337 7.809331 TCAATGTAAAGATAAGCAGCTTGTTTG 59.191 33.333 18.54 10.31 28.82 2.93
337 338 6.633500 TGTAAAGATAAGCAGCTTGTTTGT 57.367 33.333 18.54 4.08 28.82 2.83
338 339 6.437928 TGTAAAGATAAGCAGCTTGTTTGTG 58.562 36.000 18.54 0.00 28.82 3.33
339 340 5.520376 AAAGATAAGCAGCTTGTTTGTGT 57.480 34.783 18.54 0.00 28.82 3.72
340 341 6.633500 AAAGATAAGCAGCTTGTTTGTGTA 57.367 33.333 18.54 0.00 28.82 2.90
341 342 6.824305 AAGATAAGCAGCTTGTTTGTGTAT 57.176 33.333 18.54 0.00 0.00 2.29
342 343 6.824305 AGATAAGCAGCTTGTTTGTGTATT 57.176 33.333 18.54 0.00 0.00 1.89
343 344 6.846350 AGATAAGCAGCTTGTTTGTGTATTC 58.154 36.000 18.54 0.00 0.00 1.75
344 345 3.542712 AGCAGCTTGTTTGTGTATTCG 57.457 42.857 0.00 0.00 0.00 3.34
345 346 1.978782 GCAGCTTGTTTGTGTATTCGC 59.021 47.619 0.00 0.00 0.00 4.70
346 347 2.233355 CAGCTTGTTTGTGTATTCGCG 58.767 47.619 0.00 0.00 0.00 5.87
347 348 2.096466 CAGCTTGTTTGTGTATTCGCGA 60.096 45.455 3.71 3.71 0.00 5.87
348 349 2.157668 AGCTTGTTTGTGTATTCGCGAG 59.842 45.455 9.59 0.00 0.00 5.03
349 350 2.156891 GCTTGTTTGTGTATTCGCGAGA 59.843 45.455 9.59 0.55 39.20 4.04
387 388 1.153628 GTCCCCACGAAGATGGTCG 60.154 63.158 0.00 0.00 46.54 4.79
388 389 1.304630 TCCCCACGAAGATGGTCGA 60.305 57.895 1.02 0.00 43.86 4.20
396 397 1.799181 CGAAGATGGTCGATCGTGCTT 60.799 52.381 15.94 11.77 43.86 3.91
397 398 1.590238 GAAGATGGTCGATCGTGCTTG 59.410 52.381 15.94 0.00 36.04 4.01
399 400 1.066858 AGATGGTCGATCGTGCTTGTT 60.067 47.619 15.94 0.00 36.04 2.83
401 402 1.705256 TGGTCGATCGTGCTTGTTAC 58.295 50.000 15.94 2.77 0.00 2.50
408 409 0.679505 TCGTGCTTGTTACTGAGCCT 59.320 50.000 8.34 0.00 38.11 4.58
409 410 0.792640 CGTGCTTGTTACTGAGCCTG 59.207 55.000 8.34 0.00 38.11 4.85
410 411 1.160137 GTGCTTGTTACTGAGCCTGG 58.840 55.000 8.34 0.00 38.11 4.45
411 412 0.606401 TGCTTGTTACTGAGCCTGGC 60.606 55.000 11.65 11.65 38.11 4.85
412 413 0.322008 GCTTGTTACTGAGCCTGGCT 60.322 55.000 23.64 23.64 43.88 4.75
413 414 1.446907 CTTGTTACTGAGCCTGGCTG 58.553 55.000 28.82 15.53 39.88 4.85
444 445 0.618458 TATGCCGGCACTCTTCCTTT 59.382 50.000 35.50 15.65 0.00 3.11
473 474 2.203294 ACCCAGAAACACCACGCC 60.203 61.111 0.00 0.00 0.00 5.68
474 475 3.353836 CCCAGAAACACCACGCCG 61.354 66.667 0.00 0.00 0.00 6.46
475 476 4.025401 CCAGAAACACCACGCCGC 62.025 66.667 0.00 0.00 0.00 6.53
476 477 4.025401 CAGAAACACCACGCCGCC 62.025 66.667 0.00 0.00 0.00 6.13
496 497 4.227134 CCGCGGACAGGGATCAGG 62.227 72.222 24.07 0.00 34.27 3.86
497 498 3.461773 CGCGGACAGGGATCAGGT 61.462 66.667 0.00 0.00 34.27 4.00
498 499 2.187946 GCGGACAGGGATCAGGTG 59.812 66.667 0.00 0.00 0.00 4.00
499 500 2.359169 GCGGACAGGGATCAGGTGA 61.359 63.158 0.00 0.00 0.00 4.02
500 501 1.517832 CGGACAGGGATCAGGTGAC 59.482 63.158 0.00 0.00 0.00 3.67
501 502 1.257750 CGGACAGGGATCAGGTGACA 61.258 60.000 0.00 0.00 0.00 3.58
502 503 1.207791 GGACAGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 0.00 3.06
503 504 1.134280 GGACAGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 0.00 3.21
504 505 0.254178 ACAGGGATCAGGTGACATGC 59.746 55.000 0.00 0.00 0.00 4.06
505 506 0.253894 CAGGGATCAGGTGACATGCA 59.746 55.000 0.00 0.00 0.00 3.96
506 507 0.254178 AGGGATCAGGTGACATGCAC 59.746 55.000 10.63 10.63 46.98 4.57
522 523 2.330254 CACCTTTGCATGTCACCGT 58.670 52.632 0.00 0.00 0.00 4.83
523 524 0.040157 CACCTTTGCATGTCACCGTG 60.040 55.000 0.00 0.00 0.00 4.94
524 525 0.465460 ACCTTTGCATGTCACCGTGT 60.465 50.000 0.00 0.00 0.00 4.49
525 526 0.040157 CCTTTGCATGTCACCGTGTG 60.040 55.000 0.00 0.00 34.45 3.82
526 527 0.943673 CTTTGCATGTCACCGTGTGA 59.056 50.000 0.00 3.02 40.50 3.58
533 534 2.809010 TCACCGTGTGACTTGCGA 59.191 55.556 0.00 0.00 37.67 5.10
534 535 1.590525 TCACCGTGTGACTTGCGAC 60.591 57.895 0.00 0.00 37.67 5.19
535 536 2.279918 ACCGTGTGACTTGCGACC 60.280 61.111 0.00 0.00 0.00 4.79
536 537 2.029073 CCGTGTGACTTGCGACCT 59.971 61.111 0.00 0.00 0.00 3.85
537 538 1.287815 CCGTGTGACTTGCGACCTA 59.712 57.895 0.00 0.00 0.00 3.08
538 539 0.319211 CCGTGTGACTTGCGACCTAA 60.319 55.000 0.00 0.00 0.00 2.69
539 540 1.493772 CGTGTGACTTGCGACCTAAA 58.506 50.000 0.00 0.00 0.00 1.85
540 541 2.066262 CGTGTGACTTGCGACCTAAAT 58.934 47.619 0.00 0.00 0.00 1.40
541 542 2.478894 CGTGTGACTTGCGACCTAAATT 59.521 45.455 0.00 0.00 0.00 1.82
542 543 3.423123 CGTGTGACTTGCGACCTAAATTC 60.423 47.826 0.00 0.00 0.00 2.17
543 544 3.496884 GTGTGACTTGCGACCTAAATTCA 59.503 43.478 0.00 0.00 0.00 2.57
544 545 4.154195 GTGTGACTTGCGACCTAAATTCAT 59.846 41.667 0.00 0.00 0.00 2.57
545 546 5.350365 GTGTGACTTGCGACCTAAATTCATA 59.650 40.000 0.00 0.00 0.00 2.15
546 547 6.037172 GTGTGACTTGCGACCTAAATTCATAT 59.963 38.462 0.00 0.00 0.00 1.78
547 548 6.597672 TGTGACTTGCGACCTAAATTCATATT 59.402 34.615 0.00 0.00 0.00 1.28
548 549 7.120579 TGTGACTTGCGACCTAAATTCATATTT 59.879 33.333 0.00 0.00 37.68 1.40
549 550 8.609176 GTGACTTGCGACCTAAATTCATATTTA 58.391 33.333 0.00 0.00 35.61 1.40
550 551 9.168451 TGACTTGCGACCTAAATTCATATTTAA 57.832 29.630 0.00 0.00 36.16 1.52
551 552 9.997482 GACTTGCGACCTAAATTCATATTTAAA 57.003 29.630 0.00 0.00 36.16 1.52
552 553 9.783256 ACTTGCGACCTAAATTCATATTTAAAC 57.217 29.630 0.00 0.00 36.16 2.01
553 554 9.781834 CTTGCGACCTAAATTCATATTTAAACA 57.218 29.630 0.00 0.00 36.16 2.83
594 595 6.897259 AAAAATCATGCATGTTCATAGCAC 57.103 33.333 25.43 0.00 41.60 4.40
595 596 5.585820 AAATCATGCATGTTCATAGCACA 57.414 34.783 25.43 3.20 41.60 4.57
596 597 5.784578 AATCATGCATGTTCATAGCACAT 57.215 34.783 25.43 5.53 41.60 3.21
597 598 6.887626 AATCATGCATGTTCATAGCACATA 57.112 33.333 25.43 2.45 41.60 2.29
598 599 7.462571 AATCATGCATGTTCATAGCACATAT 57.537 32.000 25.43 4.81 41.60 1.78
599 600 6.887626 TCATGCATGTTCATAGCACATATT 57.112 33.333 25.43 0.00 41.60 1.28
600 601 7.982761 TCATGCATGTTCATAGCACATATTA 57.017 32.000 25.43 0.00 41.60 0.98
601 602 8.393671 TCATGCATGTTCATAGCACATATTAA 57.606 30.769 25.43 0.00 41.60 1.40
602 603 8.508875 TCATGCATGTTCATAGCACATATTAAG 58.491 33.333 25.43 0.00 41.60 1.85
603 604 8.508875 CATGCATGTTCATAGCACATATTAAGA 58.491 33.333 18.91 0.00 41.60 2.10
604 605 8.625786 TGCATGTTCATAGCACATATTAAGAT 57.374 30.769 0.00 0.00 32.88 2.40
605 606 9.723601 TGCATGTTCATAGCACATATTAAGATA 57.276 29.630 0.00 0.00 32.88 1.98
644 645 9.773328 TTCAGATCAAAATTCGAAACATACATC 57.227 29.630 0.00 0.31 0.00 3.06
645 646 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
646 647 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
647 648 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02
648 649 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
650 651 9.611284 TCAAAATTCGAAACATACATCAAGAAG 57.389 29.630 0.00 0.00 0.00 2.85
651 652 8.368126 CAAAATTCGAAACATACATCAAGAAGC 58.632 33.333 0.00 0.00 0.00 3.86
652 653 6.741992 ATTCGAAACATACATCAAGAAGCA 57.258 33.333 0.00 0.00 0.00 3.91
653 654 6.552859 TTCGAAACATACATCAAGAAGCAA 57.447 33.333 0.00 0.00 0.00 3.91
654 655 6.552859 TCGAAACATACATCAAGAAGCAAA 57.447 33.333 0.00 0.00 0.00 3.68
655 656 6.964908 TCGAAACATACATCAAGAAGCAAAA 58.035 32.000 0.00 0.00 0.00 2.44
656 657 7.421599 TCGAAACATACATCAAGAAGCAAAAA 58.578 30.769 0.00 0.00 0.00 1.94
682 683 8.136057 AGAGAAATCTGTTATGAATAGTTGCG 57.864 34.615 0.00 0.00 0.00 4.85
683 684 7.981789 AGAGAAATCTGTTATGAATAGTTGCGA 59.018 33.333 0.00 0.00 0.00 5.10
684 685 8.492673 AGAAATCTGTTATGAATAGTTGCGAA 57.507 30.769 0.00 0.00 0.00 4.70
685 686 9.113838 AGAAATCTGTTATGAATAGTTGCGAAT 57.886 29.630 0.00 0.00 0.00 3.34
686 687 9.162793 GAAATCTGTTATGAATAGTTGCGAATG 57.837 33.333 0.00 0.00 0.00 2.67
687 688 6.603237 TCTGTTATGAATAGTTGCGAATGG 57.397 37.500 0.00 0.00 0.00 3.16
688 689 6.112734 TCTGTTATGAATAGTTGCGAATGGT 58.887 36.000 0.00 0.00 0.00 3.55
689 690 6.597672 TCTGTTATGAATAGTTGCGAATGGTT 59.402 34.615 0.00 0.00 0.00 3.67
690 691 6.781138 TGTTATGAATAGTTGCGAATGGTTC 58.219 36.000 0.00 0.00 0.00 3.62
691 692 6.597672 TGTTATGAATAGTTGCGAATGGTTCT 59.402 34.615 0.00 0.00 0.00 3.01
692 693 5.741388 ATGAATAGTTGCGAATGGTTCTC 57.259 39.130 0.00 0.00 0.00 2.87
693 694 4.832248 TGAATAGTTGCGAATGGTTCTCT 58.168 39.130 0.00 0.00 0.00 3.10
694 695 4.631377 TGAATAGTTGCGAATGGTTCTCTG 59.369 41.667 0.00 0.00 0.00 3.35
695 696 2.550830 AGTTGCGAATGGTTCTCTGT 57.449 45.000 0.00 0.00 0.00 3.41
696 697 3.678056 AGTTGCGAATGGTTCTCTGTA 57.322 42.857 0.00 0.00 0.00 2.74
697 698 4.207891 AGTTGCGAATGGTTCTCTGTAT 57.792 40.909 0.00 0.00 0.00 2.29
698 699 3.935203 AGTTGCGAATGGTTCTCTGTATG 59.065 43.478 0.00 0.00 0.00 2.39
699 700 2.279741 TGCGAATGGTTCTCTGTATGC 58.720 47.619 0.00 0.00 0.00 3.14
700 701 2.093500 TGCGAATGGTTCTCTGTATGCT 60.093 45.455 0.00 0.00 0.00 3.79
701 702 3.132111 TGCGAATGGTTCTCTGTATGCTA 59.868 43.478 0.00 0.00 0.00 3.49
702 703 4.202253 TGCGAATGGTTCTCTGTATGCTAT 60.202 41.667 0.00 0.00 0.00 2.97
703 704 4.752101 GCGAATGGTTCTCTGTATGCTATT 59.248 41.667 0.00 0.00 0.00 1.73
704 705 5.107298 GCGAATGGTTCTCTGTATGCTATTC 60.107 44.000 0.00 0.00 0.00 1.75
705 706 5.985530 CGAATGGTTCTCTGTATGCTATTCA 59.014 40.000 0.00 0.00 30.72 2.57
706 707 6.074088 CGAATGGTTCTCTGTATGCTATTCAC 60.074 42.308 0.00 0.00 30.72 3.18
707 708 5.675684 TGGTTCTCTGTATGCTATTCACA 57.324 39.130 0.00 0.00 0.00 3.58
708 709 6.239217 TGGTTCTCTGTATGCTATTCACAT 57.761 37.500 0.00 0.00 0.00 3.21
709 710 7.360113 TGGTTCTCTGTATGCTATTCACATA 57.640 36.000 0.00 0.00 0.00 2.29
710 711 7.966812 TGGTTCTCTGTATGCTATTCACATAT 58.033 34.615 0.00 0.00 32.87 1.78
711 712 7.874528 TGGTTCTCTGTATGCTATTCACATATG 59.125 37.037 0.00 0.00 32.87 1.78
712 713 8.090831 GGTTCTCTGTATGCTATTCACATATGA 58.909 37.037 10.38 0.00 32.87 2.15
713 714 9.138062 GTTCTCTGTATGCTATTCACATATGAG 57.862 37.037 10.38 0.87 35.83 2.90
714 715 8.414629 TCTCTGTATGCTATTCACATATGAGT 57.585 34.615 10.38 0.00 36.26 3.41
715 716 8.864087 TCTCTGTATGCTATTCACATATGAGTT 58.136 33.333 10.38 0.00 36.26 3.01
716 717 9.486497 CTCTGTATGCTATTCACATATGAGTTT 57.514 33.333 10.38 0.00 35.83 2.66
717 718 9.481340 TCTGTATGCTATTCACATATGAGTTTC 57.519 33.333 10.38 0.00 35.83 2.78
718 719 9.486497 CTGTATGCTATTCACATATGAGTTTCT 57.514 33.333 10.38 0.00 35.83 2.52
719 720 9.481340 TGTATGCTATTCACATATGAGTTTCTC 57.519 33.333 10.38 0.00 35.83 2.87
720 721 9.703892 GTATGCTATTCACATATGAGTTTCTCT 57.296 33.333 10.38 0.00 35.83 3.10
722 723 9.624373 ATGCTATTCACATATGAGTTTCTCTTT 57.376 29.630 10.38 0.00 35.83 2.52
723 724 9.453572 TGCTATTCACATATGAGTTTCTCTTTT 57.546 29.630 10.38 0.00 35.83 2.27
745 746 7.672983 TTTTTGCTTTTTGGTGTATGTTTCA 57.327 28.000 0.00 0.00 0.00 2.69
746 747 7.672983 TTTTGCTTTTTGGTGTATGTTTCAA 57.327 28.000 0.00 0.00 0.00 2.69
747 748 7.672983 TTTGCTTTTTGGTGTATGTTTCAAA 57.327 28.000 0.00 0.00 0.00 2.69
748 749 7.856145 TTGCTTTTTGGTGTATGTTTCAAAT 57.144 28.000 0.00 0.00 0.00 2.32
749 750 7.856145 TGCTTTTTGGTGTATGTTTCAAATT 57.144 28.000 0.00 0.00 0.00 1.82
750 751 8.273780 TGCTTTTTGGTGTATGTTTCAAATTT 57.726 26.923 0.00 0.00 0.00 1.82
751 752 8.734386 TGCTTTTTGGTGTATGTTTCAAATTTT 58.266 25.926 0.00 0.00 0.00 1.82
752 753 9.008289 GCTTTTTGGTGTATGTTTCAAATTTTG 57.992 29.630 2.59 2.59 0.00 2.44
756 757 9.829507 TTTGGTGTATGTTTCAAATTTTGATCT 57.170 25.926 12.39 1.71 39.84 2.75
757 758 8.815141 TGGTGTATGTTTCAAATTTTGATCTG 57.185 30.769 12.39 0.00 39.84 2.90
758 759 8.637099 TGGTGTATGTTTCAAATTTTGATCTGA 58.363 29.630 12.39 0.00 39.84 3.27
759 760 9.474920 GGTGTATGTTTCAAATTTTGATCTGAA 57.525 29.630 12.39 1.78 39.84 3.02
798 799 8.625786 ATCTTAATATGTGCTATGAACATGCA 57.374 30.769 1.67 0.00 38.67 3.96
799 800 8.625786 TCTTAATATGTGCTATGAACATGCAT 57.374 30.769 0.00 0.00 38.67 3.96
800 801 9.723601 TCTTAATATGTGCTATGAACATGCATA 57.276 29.630 0.00 10.77 38.67 3.14
806 807 8.951787 ATGTGCTATGAACATGCATAATTTTT 57.048 26.923 0.00 0.00 36.89 1.94
846 847 9.487790 ACAATATTTAAATATGAATTTGGGCCG 57.512 29.630 19.08 0.00 36.02 6.13
847 848 8.442384 CAATATTTAAATATGAATTTGGGCCGC 58.558 33.333 19.08 0.00 36.02 6.53
848 849 5.344743 TTTAAATATGAATTTGGGCCGCA 57.655 34.783 0.00 0.00 36.02 5.69
849 850 3.902881 AAATATGAATTTGGGCCGCAA 57.097 38.095 0.00 0.00 33.97 4.85
850 851 3.457610 AATATGAATTTGGGCCGCAAG 57.542 42.857 0.00 0.00 0.00 4.01
851 852 1.846007 TATGAATTTGGGCCGCAAGT 58.154 45.000 0.00 0.00 0.00 3.16
852 853 0.532115 ATGAATTTGGGCCGCAAGTC 59.468 50.000 8.38 8.38 0.00 3.01
853 854 0.825425 TGAATTTGGGCCGCAAGTCA 60.825 50.000 12.79 12.79 0.00 3.41
854 855 0.388520 GAATTTGGGCCGCAAGTCAC 60.389 55.000 10.00 1.48 0.00 3.67
855 856 1.112315 AATTTGGGCCGCAAGTCACA 61.112 50.000 0.00 0.00 0.00 3.58
856 857 1.805428 ATTTGGGCCGCAAGTCACAC 61.805 55.000 0.00 0.00 0.00 3.82
861 862 4.012895 CCGCAAGTCACACGGTGC 62.013 66.667 8.30 0.00 42.01 5.01
862 863 3.268603 CGCAAGTCACACGGTGCA 61.269 61.111 8.30 0.00 34.89 4.57
863 864 2.818487 CGCAAGTCACACGGTGCAA 61.818 57.895 8.30 0.00 34.89 4.08
864 865 1.431440 GCAAGTCACACGGTGCAAA 59.569 52.632 8.30 0.00 35.17 3.68
865 866 0.592247 GCAAGTCACACGGTGCAAAG 60.592 55.000 8.30 0.00 35.17 2.77
866 867 0.029300 CAAGTCACACGGTGCAAAGG 59.971 55.000 8.30 0.00 32.98 3.11
867 868 0.393808 AAGTCACACGGTGCAAAGGT 60.394 50.000 8.30 0.00 32.98 3.50
868 869 1.095228 AGTCACACGGTGCAAAGGTG 61.095 55.000 8.30 10.48 37.67 4.00
884 885 2.785868 GTGCATGTCACCTGATCCC 58.214 57.895 8.54 0.00 39.79 3.85
885 886 0.254178 GTGCATGTCACCTGATCCCT 59.746 55.000 8.54 0.00 39.79 4.20
886 887 0.253894 TGCATGTCACCTGATCCCTG 59.746 55.000 0.00 0.00 0.00 4.45
887 888 0.254178 GCATGTCACCTGATCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
888 889 1.745141 GCATGTCACCTGATCCCTGTC 60.745 57.143 0.00 0.00 0.00 3.51
931 932 1.528309 AAATCGCCAATAGCCCCCG 60.528 57.895 0.00 0.00 38.78 5.73
1317 1318 2.369629 CGTCGTGGTGGTTAGTGCG 61.370 63.158 0.00 0.00 0.00 5.34
1415 1417 6.503524 GTCCTTTTCTGTGATTGTTGCTTTA 58.496 36.000 0.00 0.00 0.00 1.85
1417 1419 5.403466 CCTTTTCTGTGATTGTTGCTTTAGC 59.597 40.000 0.00 0.00 42.50 3.09
1594 1619 3.567585 TCACATTGTTCGGCAGAATTGAA 59.432 39.130 1.73 0.00 38.80 2.69
2003 2029 4.181010 CAGCGAGATGGGGGTGGG 62.181 72.222 0.00 0.00 0.00 4.61
2050 2077 0.537188 ATTCTAGCGACACCCTGTGG 59.463 55.000 0.00 0.00 37.94 4.17
2067 2094 4.617875 GCGGTGATTACAGCCAGT 57.382 55.556 1.15 0.00 41.37 4.00
2072 2099 2.165641 CGGTGATTACAGCCAGTGACTA 59.834 50.000 0.00 0.00 40.87 2.59
2101 2128 0.332972 AGGAAGAAATGGGAGGTGGC 59.667 55.000 0.00 0.00 0.00 5.01
2102 2129 0.039618 GGAAGAAATGGGAGGTGGCA 59.960 55.000 0.00 0.00 0.00 4.92
2317 2346 3.731867 GCACTGTTGGCTTTTGGATATCG 60.732 47.826 0.00 0.00 0.00 2.92
2318 2347 3.440173 CACTGTTGGCTTTTGGATATCGT 59.560 43.478 0.00 0.00 0.00 3.73
2411 2440 9.651913 AAAACTGCATTTCTCTTTGTTCTAAAA 57.348 25.926 0.00 0.00 0.00 1.52
2536 2567 5.221126 GGCAATACCTTCATGAAGTCCATTC 60.221 44.000 29.03 15.80 36.72 2.67
2627 2658 7.447238 AGTTTTATGTAGCATAACCACACAGTT 59.553 33.333 1.52 0.00 0.00 3.16
2860 2903 2.306847 TGGGACTGAAAGGCTTTGTTC 58.693 47.619 18.79 8.67 46.21 3.18
3255 3365 6.493116 CATCTTGCAGGTTGAAGATATTGTC 58.507 40.000 0.73 0.00 36.90 3.18
3499 3610 3.712218 GGCTACTCCCTCTGTTCCTAAAT 59.288 47.826 0.00 0.00 0.00 1.40
3500 3611 4.443598 GGCTACTCCCTCTGTTCCTAAATG 60.444 50.000 0.00 0.00 0.00 2.32
3501 3612 3.636153 ACTCCCTCTGTTCCTAAATGC 57.364 47.619 0.00 0.00 0.00 3.56
3513 3624 9.601217 TCTGTTCCTAAATGCTATAAGTCTTTC 57.399 33.333 0.00 0.00 0.00 2.62
3591 3702 6.092259 GTGTAGATTCACTTATTTTGCTCCGT 59.908 38.462 0.00 0.00 35.68 4.69
3830 3941 2.982130 CTCTACCGCAACCTGCCT 59.018 61.111 0.00 0.00 41.12 4.75
4025 4138 0.846427 TCTCCATTTGGGCTGAGGGT 60.846 55.000 0.00 0.00 36.21 4.34
4136 4292 8.484214 AAGCTATATACTCATCAAGTTCCTGA 57.516 34.615 0.00 0.00 39.55 3.86
4144 4300 7.645058 ACTCATCAAGTTCCTGAAAAGAAAA 57.355 32.000 0.00 0.00 33.03 2.29
4145 4301 8.066612 ACTCATCAAGTTCCTGAAAAGAAAAA 57.933 30.769 0.00 0.00 33.03 1.94
4211 4367 5.735766 CTCAGATGCACCTGATATCATCAT 58.264 41.667 12.29 7.59 41.79 2.45
4216 4372 6.442885 AGATGCACCTGATATCATCATCCTTA 59.557 38.462 21.17 3.98 38.85 2.69
4268 4424 6.341316 AGTATTCTGGTGTGTATGTAGCTTG 58.659 40.000 0.00 0.00 0.00 4.01
4280 4436 9.378551 TGTGTATGTAGCTTGTATTCTAAAAGG 57.621 33.333 0.00 0.00 0.00 3.11
4305 4486 4.696479 ATAGAGTAGGACAGCAAATGGG 57.304 45.455 0.00 0.00 0.00 4.00
4310 4491 1.915141 AGGACAGCAAATGGGTTCAG 58.085 50.000 0.00 0.00 0.00 3.02
4333 4823 1.878953 CTCAGTAGTTTTGGCACGGT 58.121 50.000 0.00 0.00 0.00 4.83
4578 5070 7.076842 ACAGTGTATCATCATTTACTTGCAC 57.923 36.000 0.00 0.00 0.00 4.57
4579 5071 6.881065 ACAGTGTATCATCATTTACTTGCACT 59.119 34.615 0.00 0.00 34.33 4.40
4759 5251 1.134220 TCTTGCACTTCCCGAGTTTGT 60.134 47.619 0.00 0.00 36.10 2.83
4760 5252 1.002468 CTTGCACTTCCCGAGTTTGTG 60.002 52.381 0.00 0.00 36.10 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.733337 AGGGAAGCTAATAACTCATGCG 58.267 45.455 0.00 0.00 0.00 4.73
1 2 4.068599 GGAGGGAAGCTAATAACTCATGC 58.931 47.826 0.00 0.00 0.00 4.06
2 3 4.505742 GGGGAGGGAAGCTAATAACTCATG 60.506 50.000 0.00 0.00 0.00 3.07
3 4 3.653352 GGGGAGGGAAGCTAATAACTCAT 59.347 47.826 0.00 0.00 0.00 2.90
4 5 3.046374 GGGGAGGGAAGCTAATAACTCA 58.954 50.000 0.00 0.00 0.00 3.41
5 6 2.372504 GGGGGAGGGAAGCTAATAACTC 59.627 54.545 0.00 0.00 0.00 3.01
6 7 2.419686 GGGGGAGGGAAGCTAATAACT 58.580 52.381 0.00 0.00 0.00 2.24
7 8 2.953284 GGGGGAGGGAAGCTAATAAC 57.047 55.000 0.00 0.00 0.00 1.89
70 71 4.404098 GTACACCACCAGGCCCGG 62.404 72.222 2.45 2.45 39.06 5.73
71 72 3.185299 TTGTACACCACCAGGCCCG 62.185 63.158 0.00 0.00 39.06 6.13
72 73 1.303317 CTTGTACACCACCAGGCCC 60.303 63.158 0.00 0.00 39.06 5.80
73 74 1.971695 GCTTGTACACCACCAGGCC 60.972 63.158 0.00 0.00 39.06 5.19
74 75 0.609131 ATGCTTGTACACCACCAGGC 60.609 55.000 0.00 0.00 39.06 4.85
75 76 1.167851 CATGCTTGTACACCACCAGG 58.832 55.000 0.00 0.00 42.21 4.45
76 77 2.079158 CTCATGCTTGTACACCACCAG 58.921 52.381 0.00 0.00 0.00 4.00
77 78 1.271325 CCTCATGCTTGTACACCACCA 60.271 52.381 0.00 0.00 0.00 4.17
78 79 1.003118 TCCTCATGCTTGTACACCACC 59.997 52.381 0.00 0.00 0.00 4.61
79 80 2.289694 ACTCCTCATGCTTGTACACCAC 60.290 50.000 0.00 0.00 0.00 4.16
80 81 1.977854 ACTCCTCATGCTTGTACACCA 59.022 47.619 0.00 0.00 0.00 4.17
81 82 2.770164 ACTCCTCATGCTTGTACACC 57.230 50.000 0.00 0.00 0.00 4.16
82 83 5.643777 ACAATAACTCCTCATGCTTGTACAC 59.356 40.000 0.00 0.00 0.00 2.90
83 84 5.643348 CACAATAACTCCTCATGCTTGTACA 59.357 40.000 0.00 0.00 0.00 2.90
84 85 5.643777 ACACAATAACTCCTCATGCTTGTAC 59.356 40.000 0.00 0.00 0.00 2.90
85 86 5.643348 CACACAATAACTCCTCATGCTTGTA 59.357 40.000 0.00 0.00 0.00 2.41
86 87 4.456911 CACACAATAACTCCTCATGCTTGT 59.543 41.667 0.00 0.00 0.00 3.16
87 88 4.456911 ACACACAATAACTCCTCATGCTTG 59.543 41.667 0.00 0.00 0.00 4.01
88 89 4.655963 ACACACAATAACTCCTCATGCTT 58.344 39.130 0.00 0.00 0.00 3.91
89 90 4.292186 ACACACAATAACTCCTCATGCT 57.708 40.909 0.00 0.00 0.00 3.79
90 91 5.065218 CCTAACACACAATAACTCCTCATGC 59.935 44.000 0.00 0.00 0.00 4.06
91 92 6.406370 TCCTAACACACAATAACTCCTCATG 58.594 40.000 0.00 0.00 0.00 3.07
92 93 6.352222 CCTCCTAACACACAATAACTCCTCAT 60.352 42.308 0.00 0.00 0.00 2.90
93 94 5.046591 CCTCCTAACACACAATAACTCCTCA 60.047 44.000 0.00 0.00 0.00 3.86
94 95 5.420409 CCTCCTAACACACAATAACTCCTC 58.580 45.833 0.00 0.00 0.00 3.71
95 96 4.225267 CCCTCCTAACACACAATAACTCCT 59.775 45.833 0.00 0.00 0.00 3.69
96 97 4.019591 ACCCTCCTAACACACAATAACTCC 60.020 45.833 0.00 0.00 0.00 3.85
97 98 5.161943 ACCCTCCTAACACACAATAACTC 57.838 43.478 0.00 0.00 0.00 3.01
98 99 5.578157 AACCCTCCTAACACACAATAACT 57.422 39.130 0.00 0.00 0.00 2.24
99 100 5.048294 CCAAACCCTCCTAACACACAATAAC 60.048 44.000 0.00 0.00 0.00 1.89
100 101 5.074115 CCAAACCCTCCTAACACACAATAA 58.926 41.667 0.00 0.00 0.00 1.40
101 102 4.658063 CCAAACCCTCCTAACACACAATA 58.342 43.478 0.00 0.00 0.00 1.90
102 103 3.496331 CCAAACCCTCCTAACACACAAT 58.504 45.455 0.00 0.00 0.00 2.71
103 104 2.938838 CCAAACCCTCCTAACACACAA 58.061 47.619 0.00 0.00 0.00 3.33
104 105 1.477923 GCCAAACCCTCCTAACACACA 60.478 52.381 0.00 0.00 0.00 3.72
105 106 1.244816 GCCAAACCCTCCTAACACAC 58.755 55.000 0.00 0.00 0.00 3.82
106 107 0.250553 CGCCAAACCCTCCTAACACA 60.251 55.000 0.00 0.00 0.00 3.72
107 108 0.958876 CCGCCAAACCCTCCTAACAC 60.959 60.000 0.00 0.00 0.00 3.32
108 109 1.377229 CCGCCAAACCCTCCTAACA 59.623 57.895 0.00 0.00 0.00 2.41
109 110 1.378119 CCCGCCAAACCCTCCTAAC 60.378 63.158 0.00 0.00 0.00 2.34
110 111 1.428718 AACCCGCCAAACCCTCCTAA 61.429 55.000 0.00 0.00 0.00 2.69
111 112 1.848895 AACCCGCCAAACCCTCCTA 60.849 57.895 0.00 0.00 0.00 2.94
112 113 3.182996 AACCCGCCAAACCCTCCT 61.183 61.111 0.00 0.00 0.00 3.69
113 114 2.989253 CAACCCGCCAAACCCTCC 60.989 66.667 0.00 0.00 0.00 4.30
114 115 3.680786 GCAACCCGCCAAACCCTC 61.681 66.667 0.00 0.00 32.94 4.30
115 116 4.531426 TGCAACCCGCCAAACCCT 62.531 61.111 0.00 0.00 41.33 4.34
116 117 4.293648 GTGCAACCCGCCAAACCC 62.294 66.667 0.00 0.00 41.33 4.11
117 118 4.639171 CGTGCAACCCGCCAAACC 62.639 66.667 0.00 0.00 41.33 3.27
118 119 3.894947 ACGTGCAACCCGCCAAAC 61.895 61.111 0.00 0.00 41.33 2.93
119 120 3.893763 CACGTGCAACCCGCCAAA 61.894 61.111 0.82 0.00 41.33 3.28
131 132 3.883744 GACCCCAGGAGCACACGTG 62.884 68.421 15.48 15.48 0.00 4.49
132 133 3.626924 GACCCCAGGAGCACACGT 61.627 66.667 0.00 0.00 0.00 4.49
133 134 2.959484 ATGACCCCAGGAGCACACG 61.959 63.158 0.00 0.00 0.00 4.49
134 135 1.377725 CATGACCCCAGGAGCACAC 60.378 63.158 0.00 0.00 0.00 3.82
135 136 0.915872 ATCATGACCCCAGGAGCACA 60.916 55.000 0.00 0.00 36.47 4.57
136 137 0.257039 AATCATGACCCCAGGAGCAC 59.743 55.000 0.00 0.00 36.47 4.40
137 138 0.256752 CAATCATGACCCCAGGAGCA 59.743 55.000 0.00 0.00 36.47 4.26
138 139 0.466922 CCAATCATGACCCCAGGAGC 60.467 60.000 0.00 0.00 36.47 4.70
139 140 0.921896 ACCAATCATGACCCCAGGAG 59.078 55.000 0.00 0.00 36.47 3.69
140 141 0.625316 CACCAATCATGACCCCAGGA 59.375 55.000 0.00 0.00 37.51 3.86
141 142 0.625316 TCACCAATCATGACCCCAGG 59.375 55.000 0.00 0.00 0.00 4.45
142 143 1.283029 ACTCACCAATCATGACCCCAG 59.717 52.381 0.00 0.00 0.00 4.45
143 144 1.371467 ACTCACCAATCATGACCCCA 58.629 50.000 0.00 0.00 0.00 4.96
144 145 3.279434 GTTACTCACCAATCATGACCCC 58.721 50.000 0.00 0.00 0.00 4.95
145 146 3.279434 GGTTACTCACCAATCATGACCC 58.721 50.000 0.00 0.00 46.42 4.46
156 157 6.591935 TCAGATCATAATTGGGTTACTCACC 58.408 40.000 0.00 0.00 46.46 4.02
157 158 8.562892 CAATCAGATCATAATTGGGTTACTCAC 58.437 37.037 0.00 0.00 0.00 3.51
158 159 8.274322 ACAATCAGATCATAATTGGGTTACTCA 58.726 33.333 15.07 0.00 35.24 3.41
159 160 8.682936 ACAATCAGATCATAATTGGGTTACTC 57.317 34.615 15.07 0.00 35.24 2.59
163 164 9.745018 CCTATACAATCAGATCATAATTGGGTT 57.255 33.333 15.07 6.00 35.24 4.11
164 165 8.894592 ACCTATACAATCAGATCATAATTGGGT 58.105 33.333 15.07 10.92 35.24 4.51
165 166 9.745018 AACCTATACAATCAGATCATAATTGGG 57.255 33.333 15.07 10.49 35.24 4.12
171 172 9.944376 GGCTAAAACCTATACAATCAGATCATA 57.056 33.333 0.00 0.00 0.00 2.15
172 173 7.885399 GGGCTAAAACCTATACAATCAGATCAT 59.115 37.037 0.00 0.00 0.00 2.45
173 174 7.224297 GGGCTAAAACCTATACAATCAGATCA 58.776 38.462 0.00 0.00 0.00 2.92
174 175 6.369065 CGGGCTAAAACCTATACAATCAGATC 59.631 42.308 0.00 0.00 0.00 2.75
175 176 6.231211 CGGGCTAAAACCTATACAATCAGAT 58.769 40.000 0.00 0.00 0.00 2.90
176 177 5.454187 CCGGGCTAAAACCTATACAATCAGA 60.454 44.000 0.00 0.00 0.00 3.27
177 178 4.755123 CCGGGCTAAAACCTATACAATCAG 59.245 45.833 0.00 0.00 0.00 2.90
178 179 4.164604 ACCGGGCTAAAACCTATACAATCA 59.835 41.667 6.32 0.00 0.00 2.57
179 180 4.711399 ACCGGGCTAAAACCTATACAATC 58.289 43.478 6.32 0.00 0.00 2.67
180 181 4.783560 ACCGGGCTAAAACCTATACAAT 57.216 40.909 6.32 0.00 0.00 2.71
181 182 4.573021 AACCGGGCTAAAACCTATACAA 57.427 40.909 6.32 0.00 0.00 2.41
182 183 4.573021 AAACCGGGCTAAAACCTATACA 57.427 40.909 6.32 0.00 0.00 2.29
183 184 4.336433 GGAAAACCGGGCTAAAACCTATAC 59.664 45.833 6.32 0.00 0.00 1.47
184 185 4.525996 GGAAAACCGGGCTAAAACCTATA 58.474 43.478 6.32 0.00 0.00 1.31
185 186 3.359033 GGAAAACCGGGCTAAAACCTAT 58.641 45.455 6.32 0.00 0.00 2.57
186 187 2.794103 GGAAAACCGGGCTAAAACCTA 58.206 47.619 6.32 0.00 0.00 3.08
187 188 1.624336 GGAAAACCGGGCTAAAACCT 58.376 50.000 6.32 0.00 0.00 3.50
188 189 0.241749 CGGAAAACCGGGCTAAAACC 59.758 55.000 6.32 0.00 0.00 3.27
189 190 0.953727 ACGGAAAACCGGGCTAAAAC 59.046 50.000 6.32 0.00 37.53 2.43
190 191 2.038295 TCTACGGAAAACCGGGCTAAAA 59.962 45.455 6.32 0.00 37.53 1.52
191 192 1.622811 TCTACGGAAAACCGGGCTAAA 59.377 47.619 6.32 0.00 37.53 1.85
192 193 1.265236 TCTACGGAAAACCGGGCTAA 58.735 50.000 6.32 0.00 37.53 3.09
193 194 1.488390 ATCTACGGAAAACCGGGCTA 58.512 50.000 6.32 0.00 37.53 3.93
194 195 0.616891 AATCTACGGAAAACCGGGCT 59.383 50.000 6.32 0.00 37.53 5.19
195 196 2.314323 TAATCTACGGAAAACCGGGC 57.686 50.000 6.32 0.00 37.53 6.13
196 197 2.938451 GGTTAATCTACGGAAAACCGGG 59.062 50.000 6.32 0.00 34.31 5.73
205 206 2.249844 ATTGCCCGGTTAATCTACGG 57.750 50.000 0.00 0.00 46.79 4.02
206 207 3.463944 AGAATTGCCCGGTTAATCTACG 58.536 45.455 0.00 0.00 0.00 3.51
207 208 4.704965 AGAGAATTGCCCGGTTAATCTAC 58.295 43.478 0.00 0.00 0.00 2.59
208 209 5.130477 AGAAGAGAATTGCCCGGTTAATCTA 59.870 40.000 0.00 0.00 0.00 1.98
209 210 3.933861 AGAGAATTGCCCGGTTAATCT 57.066 42.857 0.00 0.00 0.00 2.40
210 211 4.200092 AGAAGAGAATTGCCCGGTTAATC 58.800 43.478 0.00 0.00 0.00 1.75
211 212 4.236527 AGAAGAGAATTGCCCGGTTAAT 57.763 40.909 0.00 0.00 0.00 1.40
212 213 3.713826 AGAAGAGAATTGCCCGGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
213 214 3.263425 AGAAGAAGAGAATTGCCCGGTTA 59.737 43.478 0.00 0.00 0.00 2.85
214 215 2.040412 AGAAGAAGAGAATTGCCCGGTT 59.960 45.455 0.00 0.00 0.00 4.44
215 216 1.630878 AGAAGAAGAGAATTGCCCGGT 59.369 47.619 0.00 0.00 0.00 5.28
216 217 2.409948 AGAAGAAGAGAATTGCCCGG 57.590 50.000 0.00 0.00 0.00 5.73
217 218 6.442513 AATTAAGAAGAAGAGAATTGCCCG 57.557 37.500 0.00 0.00 0.00 6.13
218 219 9.958234 GATTAATTAAGAAGAAGAGAATTGCCC 57.042 33.333 3.94 0.00 0.00 5.36
225 226 9.587772 CCTCGTTGATTAATTAAGAAGAAGAGA 57.412 33.333 3.94 0.00 0.00 3.10
226 227 9.372369 ACCTCGTTGATTAATTAAGAAGAAGAG 57.628 33.333 3.94 7.85 0.00 2.85
251 252 9.824534 TTCGAAACGGAAGGTAAAATAAATTAC 57.175 29.630 0.00 0.00 35.49 1.89
253 254 9.747293 TTTTCGAAACGGAAGGTAAAATAAATT 57.253 25.926 10.79 0.00 0.00 1.82
254 255 9.747293 TTTTTCGAAACGGAAGGTAAAATAAAT 57.253 25.926 10.79 0.00 0.00 1.40
282 283 9.620259 AGAAGAAGAGTTACAACAAGAGATTTT 57.380 29.630 0.00 0.00 0.00 1.82
286 287 9.078990 TGATAGAAGAAGAGTTACAACAAGAGA 57.921 33.333 0.00 0.00 0.00 3.10
287 288 9.698309 TTGATAGAAGAAGAGTTACAACAAGAG 57.302 33.333 0.00 0.00 0.00 2.85
290 291 9.778741 ACATTGATAGAAGAAGAGTTACAACAA 57.221 29.630 0.00 0.00 0.00 2.83
303 304 9.265901 GCTGCTTATCTTTACATTGATAGAAGA 57.734 33.333 0.00 0.00 0.00 2.87
304 305 9.270640 AGCTGCTTATCTTTACATTGATAGAAG 57.729 33.333 0.00 0.00 0.00 2.85
305 306 9.618890 AAGCTGCTTATCTTTACATTGATAGAA 57.381 29.630 14.24 0.00 0.00 2.10
306 307 9.049523 CAAGCTGCTTATCTTTACATTGATAGA 57.950 33.333 15.51 0.00 0.00 1.98
307 308 8.834465 ACAAGCTGCTTATCTTTACATTGATAG 58.166 33.333 15.51 0.00 0.00 2.08
308 309 8.737168 ACAAGCTGCTTATCTTTACATTGATA 57.263 30.769 15.51 0.00 0.00 2.15
309 310 7.636150 ACAAGCTGCTTATCTTTACATTGAT 57.364 32.000 15.51 0.00 0.00 2.57
310 311 7.452880 AACAAGCTGCTTATCTTTACATTGA 57.547 32.000 15.51 0.00 0.00 2.57
311 312 7.596248 ACAAACAAGCTGCTTATCTTTACATTG 59.404 33.333 15.51 6.05 0.00 2.82
312 313 7.596248 CACAAACAAGCTGCTTATCTTTACATT 59.404 33.333 15.51 0.00 0.00 2.71
313 314 7.086376 CACAAACAAGCTGCTTATCTTTACAT 58.914 34.615 15.51 0.82 0.00 2.29
314 315 6.039270 ACACAAACAAGCTGCTTATCTTTACA 59.961 34.615 15.51 0.00 0.00 2.41
315 316 6.438763 ACACAAACAAGCTGCTTATCTTTAC 58.561 36.000 15.51 0.00 0.00 2.01
316 317 6.633500 ACACAAACAAGCTGCTTATCTTTA 57.367 33.333 15.51 0.00 0.00 1.85
317 318 5.520376 ACACAAACAAGCTGCTTATCTTT 57.480 34.783 15.51 9.83 0.00 2.52
318 319 6.824305 ATACACAAACAAGCTGCTTATCTT 57.176 33.333 15.51 5.83 0.00 2.40
319 320 6.402550 CGAATACACAAACAAGCTGCTTATCT 60.403 38.462 15.51 0.00 0.00 1.98
320 321 5.734498 CGAATACACAAACAAGCTGCTTATC 59.266 40.000 15.51 0.92 0.00 1.75
321 322 5.631026 CGAATACACAAACAAGCTGCTTAT 58.369 37.500 15.51 0.00 0.00 1.73
322 323 4.612712 GCGAATACACAAACAAGCTGCTTA 60.613 41.667 15.51 0.00 0.00 3.09
323 324 3.853307 GCGAATACACAAACAAGCTGCTT 60.853 43.478 9.53 9.53 0.00 3.91
324 325 2.350772 GCGAATACACAAACAAGCTGCT 60.351 45.455 0.00 0.00 0.00 4.24
325 326 1.978782 GCGAATACACAAACAAGCTGC 59.021 47.619 0.00 0.00 0.00 5.25
326 327 2.096466 TCGCGAATACACAAACAAGCTG 60.096 45.455 6.20 0.00 0.00 4.24
327 328 2.139917 TCGCGAATACACAAACAAGCT 58.860 42.857 6.20 0.00 0.00 3.74
328 329 2.156891 TCTCGCGAATACACAAACAAGC 59.843 45.455 11.33 0.00 0.00 4.01
329 330 4.383774 TTCTCGCGAATACACAAACAAG 57.616 40.909 11.33 0.00 0.00 3.16
330 331 4.797693 TTTCTCGCGAATACACAAACAA 57.202 36.364 11.33 0.00 0.00 2.83
331 332 4.797693 TTTTCTCGCGAATACACAAACA 57.202 36.364 11.33 0.00 0.00 2.83
351 352 7.225734 CGTGGGGACATTTATTTGTTTCTTTTT 59.774 33.333 0.00 0.00 46.14 1.94
360 361 5.450412 CCATCTTCGTGGGGACATTTATTTG 60.450 44.000 0.00 0.00 46.14 2.32
364 365 2.574369 ACCATCTTCGTGGGGACATTTA 59.426 45.455 0.00 0.00 46.14 1.40
387 388 1.661112 GGCTCAGTAACAAGCACGATC 59.339 52.381 0.00 0.00 40.36 3.69
388 389 1.276421 AGGCTCAGTAACAAGCACGAT 59.724 47.619 0.00 0.00 40.36 3.73
396 397 0.035317 CACAGCCAGGCTCAGTAACA 59.965 55.000 12.53 0.00 36.40 2.41
397 398 0.035458 ACACAGCCAGGCTCAGTAAC 59.965 55.000 12.53 0.00 36.40 2.50
399 400 0.831711 TCACACAGCCAGGCTCAGTA 60.832 55.000 12.53 0.00 36.40 2.74
401 402 0.322277 AATCACACAGCCAGGCTCAG 60.322 55.000 12.53 9.74 36.40 3.35
408 409 0.035534 ATACCGCAATCACACAGCCA 60.036 50.000 0.00 0.00 0.00 4.75
409 410 0.378257 CATACCGCAATCACACAGCC 59.622 55.000 0.00 0.00 0.00 4.85
410 411 0.248215 GCATACCGCAATCACACAGC 60.248 55.000 0.00 0.00 41.79 4.40
411 412 0.378257 GGCATACCGCAATCACACAG 59.622 55.000 0.00 0.00 45.17 3.66
412 413 2.476772 GGCATACCGCAATCACACA 58.523 52.632 0.00 0.00 45.17 3.72
444 445 0.104487 TTCTGGGTGCGTTTACGTGA 59.896 50.000 0.00 0.00 42.22 4.35
478 479 4.227134 CTGATCCCTGTCCGCGGG 62.227 72.222 27.83 9.43 43.38 6.13
479 480 4.227134 CCTGATCCCTGTCCGCGG 62.227 72.222 22.12 22.12 0.00 6.46
480 481 3.461773 ACCTGATCCCTGTCCGCG 61.462 66.667 0.00 0.00 0.00 6.46
481 482 2.187946 CACCTGATCCCTGTCCGC 59.812 66.667 0.00 0.00 0.00 5.54
482 483 1.257750 TGTCACCTGATCCCTGTCCG 61.258 60.000 0.00 0.00 0.00 4.79
483 484 1.134280 CATGTCACCTGATCCCTGTCC 60.134 57.143 0.00 0.00 0.00 4.02
484 485 1.745141 GCATGTCACCTGATCCCTGTC 60.745 57.143 0.00 0.00 0.00 3.51
485 486 0.254178 GCATGTCACCTGATCCCTGT 59.746 55.000 0.00 0.00 0.00 4.00
486 487 0.253894 TGCATGTCACCTGATCCCTG 59.746 55.000 0.00 0.00 0.00 4.45
487 488 0.254178 GTGCATGTCACCTGATCCCT 59.746 55.000 8.54 0.00 39.79 4.20
488 489 2.785868 GTGCATGTCACCTGATCCC 58.214 57.895 8.54 0.00 39.79 3.85
504 505 0.040157 CACGGTGACATGCAAAGGTG 60.040 55.000 0.74 0.00 0.00 4.00
505 506 0.465460 ACACGGTGACATGCAAAGGT 60.465 50.000 16.29 0.00 0.00 3.50
506 507 0.040157 CACACGGTGACATGCAAAGG 60.040 55.000 16.29 0.00 35.23 3.11
507 508 0.943673 TCACACGGTGACATGCAAAG 59.056 50.000 16.29 0.00 37.67 2.77
508 509 3.086733 TCACACGGTGACATGCAAA 57.913 47.368 16.29 0.00 37.67 3.68
509 510 4.865865 TCACACGGTGACATGCAA 57.134 50.000 16.29 0.00 37.67 4.08
516 517 1.590525 GTCGCAAGTCACACGGTGA 60.591 57.895 16.29 0.00 40.50 4.02
517 518 2.594962 GGTCGCAAGTCACACGGTG 61.595 63.158 6.58 6.58 39.48 4.94
518 519 1.457823 TAGGTCGCAAGTCACACGGT 61.458 55.000 0.00 0.00 39.48 4.83
519 520 0.319211 TTAGGTCGCAAGTCACACGG 60.319 55.000 0.00 0.00 39.48 4.94
520 521 1.493772 TTTAGGTCGCAAGTCACACG 58.506 50.000 0.00 0.00 39.48 4.49
521 522 3.496884 TGAATTTAGGTCGCAAGTCACAC 59.503 43.478 0.00 0.00 39.48 3.82
522 523 3.734463 TGAATTTAGGTCGCAAGTCACA 58.266 40.909 0.00 0.00 39.48 3.58
523 524 4.946784 ATGAATTTAGGTCGCAAGTCAC 57.053 40.909 0.00 0.00 30.36 3.67
524 525 7.624360 AAATATGAATTTAGGTCGCAAGTCA 57.376 32.000 0.00 0.00 33.45 3.41
525 526 9.997482 TTTAAATATGAATTTAGGTCGCAAGTC 57.003 29.630 0.00 0.00 38.48 3.01
526 527 9.783256 GTTTAAATATGAATTTAGGTCGCAAGT 57.217 29.630 0.00 0.00 38.48 3.16
527 528 9.781834 TGTTTAAATATGAATTTAGGTCGCAAG 57.218 29.630 0.00 0.00 38.48 4.01
571 572 6.399743 TGTGCTATGAACATGCATGATTTTT 58.600 32.000 32.75 16.45 39.00 1.94
572 573 5.968254 TGTGCTATGAACATGCATGATTTT 58.032 33.333 32.75 16.83 39.00 1.82
573 574 5.585820 TGTGCTATGAACATGCATGATTT 57.414 34.783 32.75 17.59 39.00 2.17
574 575 5.784578 ATGTGCTATGAACATGCATGATT 57.215 34.783 32.75 21.39 36.89 2.57
575 576 7.462571 AATATGTGCTATGAACATGCATGAT 57.537 32.000 32.75 22.02 38.67 2.45
576 577 6.887626 AATATGTGCTATGAACATGCATGA 57.112 33.333 32.75 11.53 38.67 3.07
577 578 8.508875 TCTTAATATGTGCTATGAACATGCATG 58.491 33.333 25.09 25.09 38.67 4.06
578 579 8.625786 TCTTAATATGTGCTATGAACATGCAT 57.374 30.769 0.00 0.00 38.67 3.96
579 580 8.625786 ATCTTAATATGTGCTATGAACATGCA 57.374 30.769 1.67 0.00 38.67 3.96
618 619 9.773328 GATGTATGTTTCGAATTTTGATCTGAA 57.227 29.630 0.00 0.00 0.00 3.02
619 620 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
620 621 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
621 622 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
622 623 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
624 625 9.611284 CTTCTTGATGTATGTTTCGAATTTTGA 57.389 29.630 0.00 0.00 0.00 2.69
625 626 8.368126 GCTTCTTGATGTATGTTTCGAATTTTG 58.632 33.333 0.00 0.00 0.00 2.44
626 627 8.081633 TGCTTCTTGATGTATGTTTCGAATTTT 58.918 29.630 0.00 0.00 0.00 1.82
627 628 7.592938 TGCTTCTTGATGTATGTTTCGAATTT 58.407 30.769 0.00 0.00 0.00 1.82
628 629 7.144722 TGCTTCTTGATGTATGTTTCGAATT 57.855 32.000 0.00 0.00 0.00 2.17
629 630 6.741992 TGCTTCTTGATGTATGTTTCGAAT 57.258 33.333 0.00 0.00 0.00 3.34
630 631 6.552859 TTGCTTCTTGATGTATGTTTCGAA 57.447 33.333 0.00 0.00 0.00 3.71
631 632 6.552859 TTTGCTTCTTGATGTATGTTTCGA 57.447 33.333 0.00 0.00 0.00 3.71
632 633 7.621832 TTTTTGCTTCTTGATGTATGTTTCG 57.378 32.000 0.00 0.00 0.00 3.46
656 657 8.607459 CGCAACTATTCATAACAGATTTCTCTT 58.393 33.333 0.00 0.00 0.00 2.85
657 658 7.981789 TCGCAACTATTCATAACAGATTTCTCT 59.018 33.333 0.00 0.00 0.00 3.10
658 659 8.131455 TCGCAACTATTCATAACAGATTTCTC 57.869 34.615 0.00 0.00 0.00 2.87
659 660 8.492673 TTCGCAACTATTCATAACAGATTTCT 57.507 30.769 0.00 0.00 0.00 2.52
660 661 9.162793 CATTCGCAACTATTCATAACAGATTTC 57.837 33.333 0.00 0.00 0.00 2.17
661 662 8.131100 CCATTCGCAACTATTCATAACAGATTT 58.869 33.333 0.00 0.00 0.00 2.17
662 663 7.283127 ACCATTCGCAACTATTCATAACAGATT 59.717 33.333 0.00 0.00 0.00 2.40
663 664 6.767902 ACCATTCGCAACTATTCATAACAGAT 59.232 34.615 0.00 0.00 0.00 2.90
664 665 6.112734 ACCATTCGCAACTATTCATAACAGA 58.887 36.000 0.00 0.00 0.00 3.41
665 666 6.363577 ACCATTCGCAACTATTCATAACAG 57.636 37.500 0.00 0.00 0.00 3.16
666 667 6.597672 AGAACCATTCGCAACTATTCATAACA 59.402 34.615 0.00 0.00 34.02 2.41
667 668 7.011482 AGAGAACCATTCGCAACTATTCATAAC 59.989 37.037 0.00 0.00 34.02 1.89
668 669 7.011389 CAGAGAACCATTCGCAACTATTCATAA 59.989 37.037 0.00 0.00 34.02 1.90
669 670 6.479990 CAGAGAACCATTCGCAACTATTCATA 59.520 38.462 0.00 0.00 34.02 2.15
670 671 5.295292 CAGAGAACCATTCGCAACTATTCAT 59.705 40.000 0.00 0.00 34.02 2.57
671 672 4.631377 CAGAGAACCATTCGCAACTATTCA 59.369 41.667 0.00 0.00 34.02 2.57
672 673 4.631813 ACAGAGAACCATTCGCAACTATTC 59.368 41.667 0.00 0.00 34.02 1.75
673 674 4.579869 ACAGAGAACCATTCGCAACTATT 58.420 39.130 0.00 0.00 34.02 1.73
674 675 4.207891 ACAGAGAACCATTCGCAACTAT 57.792 40.909 0.00 0.00 34.02 2.12
675 676 3.678056 ACAGAGAACCATTCGCAACTA 57.322 42.857 0.00 0.00 34.02 2.24
676 677 2.550830 ACAGAGAACCATTCGCAACT 57.449 45.000 0.00 0.00 34.02 3.16
677 678 3.485877 GCATACAGAGAACCATTCGCAAC 60.486 47.826 0.00 0.00 34.02 4.17
678 679 2.677836 GCATACAGAGAACCATTCGCAA 59.322 45.455 0.00 0.00 34.02 4.85
679 680 2.093500 AGCATACAGAGAACCATTCGCA 60.093 45.455 0.00 0.00 34.02 5.10
680 681 2.555199 AGCATACAGAGAACCATTCGC 58.445 47.619 0.00 0.00 34.02 4.70
681 682 5.985530 TGAATAGCATACAGAGAACCATTCG 59.014 40.000 0.00 0.00 34.02 3.34
682 683 6.763135 TGTGAATAGCATACAGAGAACCATTC 59.237 38.462 0.00 0.00 0.00 2.67
683 684 6.653020 TGTGAATAGCATACAGAGAACCATT 58.347 36.000 0.00 0.00 0.00 3.16
684 685 6.239217 TGTGAATAGCATACAGAGAACCAT 57.761 37.500 0.00 0.00 0.00 3.55
685 686 5.675684 TGTGAATAGCATACAGAGAACCA 57.324 39.130 0.00 0.00 0.00 3.67
686 687 8.090831 TCATATGTGAATAGCATACAGAGAACC 58.909 37.037 1.90 0.00 32.43 3.62
687 688 9.138062 CTCATATGTGAATAGCATACAGAGAAC 57.862 37.037 1.90 0.00 36.95 3.01
688 689 8.864087 ACTCATATGTGAATAGCATACAGAGAA 58.136 33.333 11.60 0.00 37.53 2.87
689 690 8.414629 ACTCATATGTGAATAGCATACAGAGA 57.585 34.615 11.60 0.00 37.53 3.10
690 691 9.486497 AAACTCATATGTGAATAGCATACAGAG 57.514 33.333 11.60 0.00 38.66 3.35
691 692 9.481340 GAAACTCATATGTGAATAGCATACAGA 57.519 33.333 11.60 0.00 33.05 3.41
692 693 9.486497 AGAAACTCATATGTGAATAGCATACAG 57.514 33.333 11.60 0.00 33.05 2.74
693 694 9.481340 GAGAAACTCATATGTGAATAGCATACA 57.519 33.333 11.60 0.00 33.05 2.29
694 695 9.703892 AGAGAAACTCATATGTGAATAGCATAC 57.296 33.333 11.60 0.00 33.05 2.39
696 697 9.624373 AAAGAGAAACTCATATGTGAATAGCAT 57.376 29.630 11.60 0.00 33.05 3.79
697 698 9.453572 AAAAGAGAAACTCATATGTGAATAGCA 57.546 29.630 11.60 0.00 33.05 3.49
721 722 7.672983 TGAAACATACACCAAAAAGCAAAAA 57.327 28.000 0.00 0.00 0.00 1.94
722 723 7.672983 TTGAAACATACACCAAAAAGCAAAA 57.327 28.000 0.00 0.00 0.00 2.44
723 724 7.672983 TTTGAAACATACACCAAAAAGCAAA 57.327 28.000 0.00 0.00 0.00 3.68
724 725 7.856145 ATTTGAAACATACACCAAAAAGCAA 57.144 28.000 0.00 0.00 33.05 3.91
725 726 7.856145 AATTTGAAACATACACCAAAAAGCA 57.144 28.000 0.00 0.00 33.05 3.91
726 727 9.008289 CAAAATTTGAAACATACACCAAAAAGC 57.992 29.630 0.00 0.00 33.05 3.51
730 731 9.829507 AGATCAAAATTTGAAACATACACCAAA 57.170 25.926 12.75 0.00 43.95 3.28
731 732 9.258826 CAGATCAAAATTTGAAACATACACCAA 57.741 29.630 12.75 0.00 43.95 3.67
732 733 8.637099 TCAGATCAAAATTTGAAACATACACCA 58.363 29.630 12.75 0.00 43.95 4.17
733 734 9.474920 TTCAGATCAAAATTTGAAACATACACC 57.525 29.630 12.75 0.00 43.95 4.16
772 773 9.723601 TGCATGTTCATAGCACATATTAAGATA 57.276 29.630 0.00 0.00 32.88 1.98
773 774 8.625786 TGCATGTTCATAGCACATATTAAGAT 57.374 30.769 0.00 0.00 32.88 2.40
774 775 8.625786 ATGCATGTTCATAGCACATATTAAGA 57.374 30.769 0.00 0.00 41.60 2.10
781 782 8.951787 AAAAATTATGCATGTTCATAGCACAT 57.048 26.923 10.16 0.00 41.60 3.21
820 821 9.487790 CGGCCCAAATTCATATTTAAATATTGT 57.512 29.630 16.47 4.88 32.75 2.71
821 822 8.442384 GCGGCCCAAATTCATATTTAAATATTG 58.558 33.333 16.47 12.74 32.75 1.90
822 823 8.153550 TGCGGCCCAAATTCATATTTAAATATT 58.846 29.630 16.47 3.47 32.75 1.28
823 824 7.675062 TGCGGCCCAAATTCATATTTAAATAT 58.325 30.769 13.85 13.85 32.75 1.28
824 825 7.055667 TGCGGCCCAAATTCATATTTAAATA 57.944 32.000 10.27 10.27 32.75 1.40
825 826 5.923204 TGCGGCCCAAATTCATATTTAAAT 58.077 33.333 5.89 5.89 32.75 1.40
826 827 5.344743 TGCGGCCCAAATTCATATTTAAA 57.655 34.783 0.00 0.00 32.75 1.52
827 828 5.105146 ACTTGCGGCCCAAATTCATATTTAA 60.105 36.000 0.00 0.00 32.75 1.52
828 829 4.404073 ACTTGCGGCCCAAATTCATATTTA 59.596 37.500 0.00 0.00 32.75 1.40
829 830 3.197549 ACTTGCGGCCCAAATTCATATTT 59.802 39.130 0.00 0.00 34.29 1.40
830 831 2.765699 ACTTGCGGCCCAAATTCATATT 59.234 40.909 0.00 0.00 31.94 1.28
831 832 2.362077 GACTTGCGGCCCAAATTCATAT 59.638 45.455 0.00 0.00 31.94 1.78
832 833 1.748493 GACTTGCGGCCCAAATTCATA 59.252 47.619 0.00 0.00 31.94 2.15
833 834 0.532115 GACTTGCGGCCCAAATTCAT 59.468 50.000 0.00 0.00 31.94 2.57
834 835 0.825425 TGACTTGCGGCCCAAATTCA 60.825 50.000 0.00 5.62 31.94 2.57
835 836 0.388520 GTGACTTGCGGCCCAAATTC 60.389 55.000 0.00 3.10 31.94 2.17
836 837 1.112315 TGTGACTTGCGGCCCAAATT 61.112 50.000 0.00 0.00 31.94 1.82
837 838 1.530419 TGTGACTTGCGGCCCAAAT 60.530 52.632 0.00 0.00 31.94 2.32
838 839 2.124109 TGTGACTTGCGGCCCAAA 60.124 55.556 0.00 0.00 31.94 3.28
839 840 2.904866 GTGTGACTTGCGGCCCAA 60.905 61.111 0.00 1.31 0.00 4.12
845 846 2.316361 TTTGCACCGTGTGACTTGCG 62.316 55.000 8.04 0.00 37.82 4.85
846 847 0.592247 CTTTGCACCGTGTGACTTGC 60.592 55.000 8.04 0.00 35.23 4.01
847 848 0.029300 CCTTTGCACCGTGTGACTTG 59.971 55.000 8.04 0.00 35.23 3.16
848 849 0.393808 ACCTTTGCACCGTGTGACTT 60.394 50.000 8.04 0.00 35.23 3.01
849 850 1.095228 CACCTTTGCACCGTGTGACT 61.095 55.000 8.04 0.00 35.23 3.41
850 851 1.355210 CACCTTTGCACCGTGTGAC 59.645 57.895 8.04 1.29 35.23 3.67
851 852 3.820590 CACCTTTGCACCGTGTGA 58.179 55.556 8.04 0.00 35.23 3.58
866 867 0.254178 AGGGATCAGGTGACATGCAC 59.746 55.000 10.63 10.63 46.98 4.57
867 868 0.253894 CAGGGATCAGGTGACATGCA 59.746 55.000 0.00 0.00 0.00 3.96
868 869 0.254178 ACAGGGATCAGGTGACATGC 59.746 55.000 0.00 0.00 0.00 4.06
869 870 1.134280 GGACAGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 0.00 3.21
870 871 1.207791 GGACAGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 0.00 3.06
871 872 1.257750 CGGACAGGGATCAGGTGACA 61.258 60.000 0.00 0.00 0.00 3.58
872 873 1.517832 CGGACAGGGATCAGGTGAC 59.482 63.158 0.00 0.00 0.00 3.67
873 874 2.359169 GCGGACAGGGATCAGGTGA 61.359 63.158 0.00 0.00 0.00 4.02
874 875 2.187946 GCGGACAGGGATCAGGTG 59.812 66.667 0.00 0.00 0.00 4.00
875 876 3.083997 GGCGGACAGGGATCAGGT 61.084 66.667 0.00 0.00 0.00 4.00
876 877 4.227134 CGGCGGACAGGGATCAGG 62.227 72.222 0.00 0.00 0.00 3.86
877 878 4.899239 GCGGCGGACAGGGATCAG 62.899 72.222 9.78 0.00 0.00 2.90
931 932 3.056328 GGTCGGGTGGAGCTTTGC 61.056 66.667 0.00 0.00 40.05 3.68
1594 1619 7.829211 TCAGCATTTAGTAAGCTACCAAGAAAT 59.171 33.333 0.00 0.00 36.73 2.17
1645 1670 3.888930 ACAAACGTTCATTCCTTGGATGT 59.111 39.130 0.00 0.00 34.27 3.06
2003 2029 0.108138 CGGTGGTGATGAGTTCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
2050 2077 0.391130 TCACTGGCTGTAATCACCGC 60.391 55.000 0.00 0.00 34.41 5.68
2067 2094 4.592997 TCTTCCTCTCCAGTCATAGTCA 57.407 45.455 0.00 0.00 0.00 3.41
2072 2099 3.201708 CCCATTTCTTCCTCTCCAGTCAT 59.798 47.826 0.00 0.00 0.00 3.06
2101 2128 1.327690 TACTGGCCGAACCCTAGCTG 61.328 60.000 0.00 0.00 37.83 4.24
2102 2129 0.616679 TTACTGGCCGAACCCTAGCT 60.617 55.000 0.00 0.00 37.83 3.32
2317 2346 5.106908 GCAGAATCAGGTTTAGTGAAGACAC 60.107 44.000 0.00 0.00 46.24 3.67
2318 2347 4.997395 GCAGAATCAGGTTTAGTGAAGACA 59.003 41.667 0.00 0.00 0.00 3.41
2536 2567 5.395778 CGTATTGCAGTTTAGAGTAGCTACG 59.604 44.000 17.99 2.70 0.00 3.51
2613 2644 9.474920 AACATATTCAAAAACTGTGTGGTTATG 57.525 29.630 0.00 0.00 0.00 1.90
2860 2903 5.247507 TGTCCATGAACAAGAACAACAAG 57.752 39.130 0.00 0.00 0.00 3.16
3188 3237 4.777366 TGGATAATCACCAGAACAGACTCA 59.223 41.667 0.00 0.00 33.22 3.41
3255 3365 3.000727 GGAAACAGTATTCCCTGTGTCG 58.999 50.000 5.64 0.00 46.42 4.35
3513 3624 8.322906 TGTTGTAGTCCATTTGAAATGTCTAG 57.677 34.615 15.93 1.90 0.00 2.43
3591 3702 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
3633 3744 1.622312 ACAAAGTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
3830 3941 4.041567 TCAGGCTTGAGAACTCCAACATAA 59.958 41.667 0.00 0.00 0.00 1.90
3980 4093 6.507023 AGGAACTTGTCTTGTGCAAAATTAG 58.493 36.000 0.00 0.00 27.25 1.73
4144 4300 7.504924 TTTCGGACAAACACATCTCTATTTT 57.495 32.000 0.00 0.00 0.00 1.82
4145 4301 7.228706 AGTTTTCGGACAAACACATCTCTATTT 59.771 33.333 14.02 0.00 38.86 1.40
4147 4303 6.231211 AGTTTTCGGACAAACACATCTCTAT 58.769 36.000 14.02 0.00 38.86 1.98
4148 4304 5.607477 AGTTTTCGGACAAACACATCTCTA 58.393 37.500 14.02 0.00 38.86 2.43
4149 4305 4.451900 AGTTTTCGGACAAACACATCTCT 58.548 39.130 14.02 0.00 38.86 3.10
4150 4306 4.272504 TGAGTTTTCGGACAAACACATCTC 59.727 41.667 14.02 0.00 38.86 2.75
4151 4307 4.196193 TGAGTTTTCGGACAAACACATCT 58.804 39.130 14.02 0.00 38.86 2.90
4152 4308 4.545823 TGAGTTTTCGGACAAACACATC 57.454 40.909 14.02 7.18 38.86 3.06
4153 4309 4.974368 TTGAGTTTTCGGACAAACACAT 57.026 36.364 14.02 0.28 37.18 3.21
4155 4311 5.455525 CAGAATTGAGTTTTCGGACAAACAC 59.544 40.000 14.02 10.19 38.86 3.32
4157 4313 5.816919 TCAGAATTGAGTTTTCGGACAAAC 58.183 37.500 7.34 7.34 36.97 2.93
4159 4315 5.673337 CTCAGAATTGAGTTTTCGGACAA 57.327 39.130 0.00 0.00 44.74 3.18
4186 4342 2.701951 TGATATCAGGTGCATCTGAGCA 59.298 45.455 31.75 25.18 45.60 4.26
4211 4367 3.686227 AATCCCCATGCACATTAAGGA 57.314 42.857 0.00 0.00 0.00 3.36
4216 4372 1.205966 CCCAAATCCCCATGCACATT 58.794 50.000 0.00 0.00 0.00 2.71
4280 4436 6.038714 CCCATTTGCTGTCCTACTCTATTTTC 59.961 42.308 0.00 0.00 0.00 2.29
4305 4486 1.797025 AAACTACTGAGCCGCTGAAC 58.203 50.000 0.00 0.00 0.00 3.18
4310 4491 1.234615 TGCCAAAACTACTGAGCCGC 61.235 55.000 0.00 0.00 0.00 6.53
4333 4823 2.436417 CGGCTCAAATCTTTTCCTGGA 58.564 47.619 0.00 0.00 0.00 3.86
4658 5150 6.552008 TGGTGGAAAGAATAAGATGAGGTTT 58.448 36.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.