Multiple sequence alignment - TraesCS1A01G120800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G120800 chr1A 100.000 4159 0 0 1 4159 133167640 133163482 0.000000e+00 7681.0
1 TraesCS1A01G120800 chr1A 97.354 189 5 0 3899 4087 508278241 508278053 5.190000e-84 322.0
2 TraesCS1A01G120800 chr1A 97.354 189 5 0 3899 4087 508305567 508305379 5.190000e-84 322.0
3 TraesCS1A01G120800 chr1A 97.354 189 5 0 3899 4087 508310451 508310263 5.190000e-84 322.0
4 TraesCS1A01G120800 chr1A 97.354 189 5 0 3899 4087 508337165 508336977 5.190000e-84 322.0
5 TraesCS1A01G120800 chr1A 96.335 191 5 2 3898 4086 521945265 521945075 3.120000e-81 313.0
6 TraesCS1A01G120800 chr1B 93.281 1280 62 16 880 2140 185224657 185223383 0.000000e+00 1866.0
7 TraesCS1A01G120800 chr1B 89.403 1123 88 14 2196 3290 185223384 185222265 0.000000e+00 1386.0
8 TraesCS1A01G120800 chr1B 83.544 79 11 2 4082 4159 653902037 653901960 5.770000e-09 73.1
9 TraesCS1A01G120800 chr1D 94.624 1116 39 10 900 2005 121404699 121403595 0.000000e+00 1709.0
10 TraesCS1A01G120800 chr1D 92.576 1145 60 11 2767 3905 121397880 121396755 0.000000e+00 1620.0
11 TraesCS1A01G120800 chr1D 92.986 884 44 7 1 876 409531270 409530397 0.000000e+00 1273.0
12 TraesCS1A01G120800 chr1D 87.521 601 50 6 2196 2773 121403379 121402781 0.000000e+00 671.0
13 TraesCS1A01G120800 chr1D 83.333 210 22 9 1940 2140 121403583 121403378 9.180000e-42 182.0
14 TraesCS1A01G120800 chr1D 85.366 82 11 1 4079 4159 470641888 470641807 2.660000e-12 84.2
15 TraesCS1A01G120800 chr5D 95.973 894 17 4 1 876 335125928 335126820 0.000000e+00 1434.0
16 TraesCS1A01G120800 chr7A 98.429 191 3 0 3897 4087 610448564 610448754 1.850000e-88 337.0
17 TraesCS1A01G120800 chr6A 97.849 186 3 1 3895 4080 446526741 446526557 1.870000e-83 320.0
18 TraesCS1A01G120800 chr6A 87.805 82 9 1 4079 4159 606353381 606353300 1.230000e-15 95.3
19 TraesCS1A01G120800 chr2A 97.814 183 2 2 3897 4079 470645642 470645822 8.680000e-82 315.0
20 TraesCS1A01G120800 chr2A 95.897 195 5 3 3899 4092 778800751 778800559 3.120000e-81 313.0
21 TraesCS1A01G120800 chr2A 80.952 84 13 2 4079 4159 768629763 768629846 3.470000e-06 63.9
22 TraesCS1A01G120800 chr3D 83.117 154 15 10 537 685 267603935 267603788 3.370000e-26 130.0
23 TraesCS1A01G120800 chr7D 91.549 71 5 1 4080 4149 69283500 69283570 3.420000e-16 97.1
24 TraesCS1A01G120800 chr2B 86.585 82 9 2 4079 4159 743339512 743339432 5.730000e-14 89.8
25 TraesCS1A01G120800 chr2D 84.146 82 11 2 4079 4159 604048295 604048375 1.240000e-10 78.7
26 TraesCS1A01G120800 chr7B 82.716 81 13 1 4079 4158 159180329 159180409 2.070000e-08 71.3
27 TraesCS1A01G120800 chr4A 81.818 88 8 6 4079 4159 624355714 624355628 2.680000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G120800 chr1A 133163482 133167640 4158 True 7681 7681 100.000000 1 4159 1 chr1A.!!$R1 4158
1 TraesCS1A01G120800 chr1B 185222265 185224657 2392 True 1626 1866 91.342000 880 3290 2 chr1B.!!$R2 2410
2 TraesCS1A01G120800 chr1D 121396755 121397880 1125 True 1620 1620 92.576000 2767 3905 1 chr1D.!!$R1 1138
3 TraesCS1A01G120800 chr1D 409530397 409531270 873 True 1273 1273 92.986000 1 876 1 chr1D.!!$R2 875
4 TraesCS1A01G120800 chr1D 121402781 121404699 1918 True 854 1709 88.492667 900 2773 3 chr1D.!!$R4 1873
5 TraesCS1A01G120800 chr5D 335125928 335126820 892 False 1434 1434 95.973000 1 876 1 chr5D.!!$F1 875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 842 1.072331 ACACGGCAGACCTCTTTTCAT 59.928 47.619 0.0 0.0 0.0 2.57 F
1448 1480 0.108585 GACACCAAGGGACAGCAAGA 59.891 55.000 0.0 0.0 0.0 3.02 F
2940 3096 0.039764 TCTCGGGCTCTCCTTCTGAA 59.960 55.000 0.0 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2514 2665 0.040058 TACCACGCCAGGAAGGACTA 59.960 55.0 0.0 0.0 41.22 2.59 R
3050 3206 0.317479 AACTCTTGTCCGGGAACTCG 59.683 55.0 0.0 0.0 0.00 4.18 R
3994 4152 0.036765 GGATACAACCCACGTCAGCA 60.037 55.0 0.0 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.738619 ATGGAAAATCCTACCAAAACCAC 57.261 39.130 0.00 0.00 37.46 4.16
237 238 2.829458 GGCCGTCGCTCCTACTCT 60.829 66.667 0.00 0.00 34.44 3.24
266 268 1.812571 CCAACAAATCAGAGGAACCGG 59.187 52.381 0.00 0.00 0.00 5.28
302 304 1.298157 CTGTCCGCGAATTCCTGCAA 61.298 55.000 8.23 0.00 0.00 4.08
304 306 2.100991 CCGCGAATTCCTGCAAGC 59.899 61.111 8.23 0.00 0.00 4.01
560 585 2.066999 TTGGGCGGCAAGGGTTTTT 61.067 52.632 12.47 0.00 0.00 1.94
651 676 4.306391 TGTTCCCCTTATCTGATCCATGA 58.694 43.478 0.00 0.00 0.00 3.07
816 842 1.072331 ACACGGCAGACCTCTTTTCAT 59.928 47.619 0.00 0.00 0.00 2.57
890 916 4.747810 GGCACCAATGTCTCCTTATTTTG 58.252 43.478 0.00 0.00 0.00 2.44
957 983 4.175962 AGTGGGGTTTTCCAGAATAGAGA 58.824 43.478 0.00 0.00 42.91 3.10
958 984 4.019231 AGTGGGGTTTTCCAGAATAGAGAC 60.019 45.833 0.00 0.00 42.91 3.36
959 985 3.913799 TGGGGTTTTCCAGAATAGAGACA 59.086 43.478 0.00 0.00 42.91 3.41
983 1010 3.057526 GCAGGCCGTTAGAAACTTTGAAT 60.058 43.478 0.00 0.00 0.00 2.57
1074 1106 2.036098 TGCCACTGCAATCCCCAG 59.964 61.111 0.00 0.00 46.66 4.45
1081 1113 2.276309 CTGCAATCCCCAGGTCCTCC 62.276 65.000 0.00 0.00 0.00 4.30
1211 1243 3.470888 CTCGCTCCCGTTCCCCAT 61.471 66.667 0.00 0.00 35.54 4.00
1218 1250 2.186826 CCCGTTCCCCATCAATCGC 61.187 63.158 0.00 0.00 0.00 4.58
1219 1251 1.153168 CCGTTCCCCATCAATCGCT 60.153 57.895 0.00 0.00 0.00 4.93
1249 1281 0.620121 CTCCTGCTCCCTTCTCCCTT 60.620 60.000 0.00 0.00 0.00 3.95
1279 1311 0.247736 GCGCCTCTTCTCTTCCAAGA 59.752 55.000 0.00 0.00 0.00 3.02
1318 1350 2.823593 CATCAATCACGGCCGCCA 60.824 61.111 28.58 12.98 0.00 5.69
1338 1370 0.610687 CGAGAACCCTGCTCTTCCTT 59.389 55.000 0.00 0.00 0.00 3.36
1440 1472 1.070786 GCAAGACGACACCAAGGGA 59.929 57.895 0.00 0.00 0.00 4.20
1448 1480 0.108585 GACACCAAGGGACAGCAAGA 59.891 55.000 0.00 0.00 0.00 3.02
1449 1481 0.550914 ACACCAAGGGACAGCAAGAA 59.449 50.000 0.00 0.00 0.00 2.52
1450 1482 1.242076 CACCAAGGGACAGCAAGAAG 58.758 55.000 0.00 0.00 0.00 2.85
1551 1586 3.088500 GATGCAGCCAAGCGACGAC 62.089 63.158 0.00 0.00 37.31 4.34
1881 1921 2.159824 GCTTTCTTTCTTACCCGCAGTC 59.840 50.000 0.00 0.00 0.00 3.51
1896 1936 4.122776 CCGCAGTCTGCTCTTGTTAATAT 58.877 43.478 22.13 0.00 42.25 1.28
1927 1974 6.663523 TGATTAGACTGGTCACACTCTATGAA 59.336 38.462 3.51 0.00 0.00 2.57
1930 1977 4.774726 AGACTGGTCACACTCTATGAATGT 59.225 41.667 3.51 0.00 0.00 2.71
1974 2092 5.469210 AATCAGTACTGGTAGGTAGGAGT 57.531 43.478 22.48 0.00 0.00 3.85
1981 2099 4.949121 ACTGGTAGGTAGGAGTTCAAGAT 58.051 43.478 0.00 0.00 0.00 2.40
1984 2102 6.958192 ACTGGTAGGTAGGAGTTCAAGATAAA 59.042 38.462 0.00 0.00 0.00 1.40
2027 2145 7.727955 CATTGTTGCAAATCGCTGTAATTTTA 58.272 30.769 0.00 0.00 43.06 1.52
2029 2147 7.881643 TGTTGCAAATCGCTGTAATTTTATT 57.118 28.000 0.00 0.00 43.06 1.40
2039 2161 7.711846 TCGCTGTAATTTTATTGTATGCCAAT 58.288 30.769 0.00 0.00 45.68 3.16
2040 2162 8.841300 TCGCTGTAATTTTATTGTATGCCAATA 58.159 29.630 0.00 0.00 42.03 1.90
2056 2178 4.153986 GCCAATATCTCGATGCGAATTTG 58.846 43.478 0.00 0.00 34.74 2.32
2057 2179 4.083855 GCCAATATCTCGATGCGAATTTGA 60.084 41.667 0.00 0.00 34.74 2.69
2063 2190 5.641777 TCTCGATGCGAATTTGATTACAG 57.358 39.130 0.00 0.00 34.74 2.74
2069 2196 5.469373 TGCGAATTTGATTACAGTGCTAG 57.531 39.130 0.00 0.00 0.00 3.42
2104 2232 9.733556 AAGGAAAAACACCAACTTAAATTTCTT 57.266 25.926 0.00 0.00 0.00 2.52
2131 2259 5.189736 ACTGTCTAATCTTTGATGGCTGGTA 59.810 40.000 0.00 0.00 0.00 3.25
2137 2265 9.154632 TCTAATCTTTGATGGCTGGTACTAATA 57.845 33.333 0.00 0.00 0.00 0.98
2140 2268 7.432148 TCTTTGATGGCTGGTACTAATAAGA 57.568 36.000 0.00 0.00 0.00 2.10
2142 2270 8.325787 TCTTTGATGGCTGGTACTAATAAGAAA 58.674 33.333 0.00 0.00 0.00 2.52
2143 2271 9.125026 CTTTGATGGCTGGTACTAATAAGAAAT 57.875 33.333 0.00 0.00 0.00 2.17
2148 2276 8.446599 TGGCTGGTACTAATAAGAAATTAAGC 57.553 34.615 0.00 0.00 0.00 3.09
2149 2277 8.272173 TGGCTGGTACTAATAAGAAATTAAGCT 58.728 33.333 0.00 0.00 0.00 3.74
2150 2278 8.775527 GGCTGGTACTAATAAGAAATTAAGCTC 58.224 37.037 0.00 0.00 0.00 4.09
2151 2279 9.549078 GCTGGTACTAATAAGAAATTAAGCTCT 57.451 33.333 0.00 0.00 0.00 4.09
2169 2297 9.528018 TTAAGCTCTACTTTTTGAATTGTTTGG 57.472 29.630 0.00 0.00 39.97 3.28
2170 2298 5.985530 AGCTCTACTTTTTGAATTGTTTGGC 59.014 36.000 0.00 0.00 0.00 4.52
2171 2299 5.985530 GCTCTACTTTTTGAATTGTTTGGCT 59.014 36.000 0.00 0.00 0.00 4.75
2172 2300 6.479990 GCTCTACTTTTTGAATTGTTTGGCTT 59.520 34.615 0.00 0.00 0.00 4.35
2173 2301 7.011389 GCTCTACTTTTTGAATTGTTTGGCTTT 59.989 33.333 0.00 0.00 0.00 3.51
2174 2302 8.785329 TCTACTTTTTGAATTGTTTGGCTTTT 57.215 26.923 0.00 0.00 0.00 2.27
2175 2303 9.225436 TCTACTTTTTGAATTGTTTGGCTTTTT 57.775 25.926 0.00 0.00 0.00 1.94
2176 2304 9.276397 CTACTTTTTGAATTGTTTGGCTTTTTG 57.724 29.630 0.00 0.00 0.00 2.44
2177 2305 7.880105 ACTTTTTGAATTGTTTGGCTTTTTGA 58.120 26.923 0.00 0.00 0.00 2.69
2178 2306 8.355913 ACTTTTTGAATTGTTTGGCTTTTTGAA 58.644 25.926 0.00 0.00 0.00 2.69
2179 2307 9.356433 CTTTTTGAATTGTTTGGCTTTTTGAAT 57.644 25.926 0.00 0.00 0.00 2.57
2180 2308 8.908172 TTTTGAATTGTTTGGCTTTTTGAATC 57.092 26.923 0.00 0.00 0.00 2.52
2181 2309 6.616774 TGAATTGTTTGGCTTTTTGAATCC 57.383 33.333 0.00 0.00 0.00 3.01
2182 2310 6.118170 TGAATTGTTTGGCTTTTTGAATCCA 58.882 32.000 0.00 0.00 0.00 3.41
2183 2311 6.600822 TGAATTGTTTGGCTTTTTGAATCCAA 59.399 30.769 0.00 0.00 36.86 3.53
2184 2312 7.121759 TGAATTGTTTGGCTTTTTGAATCCAAA 59.878 29.630 3.77 3.77 43.80 3.28
2189 2317 7.401955 TTTGGCTTTTTGAATCCAAACAATT 57.598 28.000 3.77 0.00 41.90 2.32
2190 2318 7.401955 TTGGCTTTTTGAATCCAAACAATTT 57.598 28.000 0.00 0.00 41.54 1.82
2191 2319 8.511604 TTGGCTTTTTGAATCCAAACAATTTA 57.488 26.923 0.00 0.00 41.54 1.40
2192 2320 8.511604 TGGCTTTTTGAATCCAAACAATTTAA 57.488 26.923 0.00 0.00 41.54 1.52
2193 2321 8.960591 TGGCTTTTTGAATCCAAACAATTTAAA 58.039 25.926 0.00 0.00 41.54 1.52
2194 2322 9.794685 GGCTTTTTGAATCCAAACAATTTAAAA 57.205 25.926 0.00 0.00 41.54 1.52
2247 2376 5.691754 CCAAAACTAGGTCTTGCATTTTGTC 59.308 40.000 13.75 0.00 36.00 3.18
2248 2377 6.272318 CAAAACTAGGTCTTGCATTTTGTCA 58.728 36.000 8.88 0.00 34.09 3.58
2271 2400 8.116136 GTCAAAGGTCAAATGATTTTGTTTGTC 58.884 33.333 16.22 4.24 42.37 3.18
2326 2457 3.979101 TTGGATGACAGCTGATGTACA 57.021 42.857 23.35 9.24 44.17 2.90
2338 2489 4.811024 AGCTGATGTACACATAAATCCACG 59.189 41.667 0.00 0.00 36.57 4.94
2346 2497 7.854381 ATGTACACATAAATCCACGAGGGAAAT 60.854 37.037 0.00 0.00 41.48 2.17
2355 2506 2.544685 CACGAGGGAAATAGAGCTGTG 58.455 52.381 0.00 0.00 0.00 3.66
2361 2512 4.362677 AGGGAAATAGAGCTGTGGTAGAA 58.637 43.478 0.00 0.00 0.00 2.10
2365 2516 6.408662 GGGAAATAGAGCTGTGGTAGAATTCT 60.409 42.308 13.56 13.56 0.00 2.40
2375 2526 6.818644 GCTGTGGTAGAATTCTTATGTGAGAA 59.181 38.462 14.36 0.00 39.76 2.87
2388 2539 8.996024 TCTTATGTGAGAAATGTTTGATACGA 57.004 30.769 0.00 0.00 0.00 3.43
2409 2560 5.242838 ACGAATTTGTATTTCAGGCCTTTGA 59.757 36.000 0.00 0.00 0.00 2.69
2423 2574 1.526575 CTTTGAAGCATGCACCGGGT 61.527 55.000 21.98 0.00 0.00 5.28
2424 2575 1.523154 TTTGAAGCATGCACCGGGTC 61.523 55.000 21.98 7.44 0.00 4.46
2434 2585 1.079405 CACCGGGTCGTACTGCAAT 60.079 57.895 6.32 0.00 0.00 3.56
2446 2597 3.119884 CGTACTGCAATTTGCCATTCTGA 60.120 43.478 18.27 0.00 44.23 3.27
2464 2615 9.177608 CCATTCTGATTTTATAACAAGGACAGA 57.822 33.333 0.00 0.00 0.00 3.41
2519 2670 7.353497 GTGAAACTTGCTTTTTACTCTAGTCC 58.647 38.462 0.00 0.00 0.00 3.85
2527 2678 4.820894 TTTTACTCTAGTCCTTCCTGGC 57.179 45.455 0.00 0.00 35.26 4.85
2552 2703 6.982141 CGTGGTATTTACAAACCTAGCTGATA 59.018 38.462 0.00 0.00 36.67 2.15
2559 2710 8.732746 TTTACAAACCTAGCTGATATTTCCTC 57.267 34.615 0.00 0.00 0.00 3.71
2562 2714 6.156949 ACAAACCTAGCTGATATTTCCTCTCA 59.843 38.462 0.00 0.00 0.00 3.27
2568 2720 7.718753 CCTAGCTGATATTTCCTCTCAACATTT 59.281 37.037 0.00 0.00 0.00 2.32
2576 2728 5.982890 TTCCTCTCAACATTTCCCATTTC 57.017 39.130 0.00 0.00 0.00 2.17
2617 2769 3.623060 GCATGCATAAAAGACTCGAAGGA 59.377 43.478 14.21 0.00 0.00 3.36
2656 2808 2.606551 GCTGGAGAAAGCTTTGCAACTC 60.607 50.000 18.30 15.84 40.20 3.01
2658 2810 1.604278 GGAGAAAGCTTTGCAACTCGT 59.396 47.619 18.30 0.00 0.00 4.18
2755 2907 5.026121 ACAGATCATACCAAAGTCCTGAGA 58.974 41.667 0.00 0.00 0.00 3.27
2760 2912 4.346709 TCATACCAAAGTCCTGAGAACACA 59.653 41.667 0.00 0.00 0.00 3.72
2796 2952 2.158667 TCTAATGGAATTCCCGCCTTCC 60.159 50.000 21.90 0.00 41.13 3.46
2834 2990 3.245016 ACCTGGATGTTGCATCAGAGAAA 60.245 43.478 0.00 0.00 0.00 2.52
2867 3023 7.079451 TCTTATTAATGAGGATCCAAGGGAC 57.921 40.000 15.82 0.00 32.98 4.46
2896 3052 3.371917 CCTCATCTTTGCCAGGTATTCCA 60.372 47.826 0.00 0.00 35.89 3.53
2900 3056 4.314522 TCTTTGCCAGGTATTCCATGAA 57.685 40.909 0.00 0.00 35.89 2.57
2931 3087 3.432326 GGTTTGATATGTTCTCGGGCTCT 60.432 47.826 0.00 0.00 0.00 4.09
2933 3089 1.964223 TGATATGTTCTCGGGCTCTCC 59.036 52.381 0.00 0.00 0.00 3.71
2940 3096 0.039764 TCTCGGGCTCTCCTTCTGAA 59.960 55.000 0.00 0.00 0.00 3.02
2946 3102 1.480545 GGCTCTCCTTCTGAAGTCTCC 59.519 57.143 15.72 6.25 0.00 3.71
2947 3103 1.134175 GCTCTCCTTCTGAAGTCTCCG 59.866 57.143 15.72 0.96 0.00 4.63
2965 3121 0.655733 CGTGTCCGCTGTGTTTCTTT 59.344 50.000 0.00 0.00 0.00 2.52
3050 3206 2.032681 AGAAGCCTTGTGCCGGAC 59.967 61.111 5.05 0.46 42.71 4.79
3190 3346 2.750141 TCCTATACCTGAACGGCTCT 57.250 50.000 0.00 0.00 35.61 4.09
3209 3365 5.508320 GGCTCTTCATACTTAGTGAGGTAGC 60.508 48.000 0.00 0.00 31.58 3.58
3212 3368 5.828859 TCTTCATACTTAGTGAGGTAGCTCC 59.171 44.000 18.90 10.36 0.00 4.70
3217 3373 5.390087 ACTTAGTGAGGTAGCTCCAGATA 57.610 43.478 18.90 4.29 39.02 1.98
3229 3385 5.531122 AGCTCCAGATAGTTGCGTATTTA 57.469 39.130 0.00 0.00 0.00 1.40
3249 3405 3.846423 ATGCGCATACAATGACACAAA 57.154 38.095 24.02 0.00 0.00 2.83
3256 3412 4.925054 GCATACAATGACACAAAGTGCAAT 59.075 37.500 0.00 0.00 36.98 3.56
3350 3506 5.940470 AGGTTCCTACAACTTTTAGCTCATG 59.060 40.000 0.00 0.00 0.00 3.07
3367 3523 4.437390 GCTCATGTGTTAATCCTCAAACGG 60.437 45.833 0.00 0.00 0.00 4.44
3394 3550 4.806775 CCACACAACCATGAATTGCATATG 59.193 41.667 0.00 0.00 34.82 1.78
3395 3551 4.806775 CACACAACCATGAATTGCATATGG 59.193 41.667 14.58 14.58 45.37 2.74
3399 3555 5.364446 ACAACCATGAATTGCATATGGATGT 59.636 36.000 20.10 20.10 46.55 3.06
3448 3604 1.728971 CTGACAGAGATGCACCGTTTC 59.271 52.381 0.00 0.00 0.00 2.78
3452 3608 1.136252 CAGAGATGCACCGTTTCGTTG 60.136 52.381 0.00 0.00 0.00 4.10
3470 3626 4.276678 TCGTTGACCTCTCTTCGTCTTAAA 59.723 41.667 0.00 0.00 0.00 1.52
3480 3636 5.421056 TCTCTTCGTCTTAAATGGAGGCTAA 59.579 40.000 0.00 0.00 0.00 3.09
3484 3640 6.235231 TCGTCTTAAATGGAGGCTAATTCT 57.765 37.500 0.00 0.00 0.00 2.40
3577 3733 5.288804 TGCTTGTAAATGTCTTCCTTTTGC 58.711 37.500 0.00 0.00 0.00 3.68
3589 3745 1.207570 TCCTTTTGCGCGGGAATACTA 59.792 47.619 8.83 0.00 0.00 1.82
3611 3767 4.901868 AGTTAAAGTCATTCGGCTGGTAA 58.098 39.130 0.00 0.00 0.00 2.85
3623 3779 2.671070 CGGCTGGTAAATTTGGCTCAAC 60.671 50.000 0.00 0.00 0.00 3.18
3643 3799 7.065803 GCTCAACTTTGTGCTATATGGAACTTA 59.934 37.037 8.43 0.00 42.56 2.24
3672 3828 3.213206 TGCTGTAAGAATAGGCATGGG 57.787 47.619 0.00 0.00 34.07 4.00
3696 3852 6.419710 GGAACAAAAAGGGAAATCGTGTTTAG 59.580 38.462 0.00 0.00 0.00 1.85
3740 3898 8.367943 TCGAACAGTAAATTAGCAACAACTAA 57.632 30.769 0.00 0.00 36.60 2.24
3886 4044 6.590234 ACTCCATTTATCGAAAAAGGCTTT 57.410 33.333 6.68 6.68 0.00 3.51
3905 4063 7.860918 GGCTTTGCCCCTACTTTATATATAC 57.139 40.000 0.00 0.00 44.06 1.47
3906 4064 7.399634 GGCTTTGCCCCTACTTTATATATACA 58.600 38.462 0.00 0.00 44.06 2.29
3907 4065 8.053355 GGCTTTGCCCCTACTTTATATATACAT 58.947 37.037 0.00 0.00 44.06 2.29
3908 4066 9.462606 GCTTTGCCCCTACTTTATATATACATT 57.537 33.333 0.00 0.00 0.00 2.71
3954 4112 8.055279 TGAGATTTAATTTGGTCTCATTCACC 57.945 34.615 10.50 0.00 41.40 4.02
3955 4113 7.890127 TGAGATTTAATTTGGTCTCATTCACCT 59.110 33.333 10.50 0.00 41.40 4.00
3956 4114 8.655935 AGATTTAATTTGGTCTCATTCACCTT 57.344 30.769 0.00 0.00 34.66 3.50
3957 4115 9.093458 AGATTTAATTTGGTCTCATTCACCTTT 57.907 29.630 0.00 0.00 34.66 3.11
3958 4116 9.710900 GATTTAATTTGGTCTCATTCACCTTTT 57.289 29.630 0.00 0.00 34.66 2.27
3963 4121 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
3964 4122 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
3965 4123 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
3966 4124 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
3967 4125 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
3968 4126 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
3969 4127 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
3970 4128 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
3971 4129 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
3972 4130 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
3973 4131 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
3974 4132 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
3975 4133 4.895297 ACCTTTTATAGCCATTGGATGTGG 59.105 41.667 6.95 0.00 39.80 4.17
3976 4134 4.895297 CCTTTTATAGCCATTGGATGTGGT 59.105 41.667 6.95 0.00 39.01 4.16
3977 4135 5.221303 CCTTTTATAGCCATTGGATGTGGTG 60.221 44.000 6.95 0.00 39.01 4.17
3978 4136 1.696063 ATAGCCATTGGATGTGGTGC 58.304 50.000 6.95 0.00 39.01 5.01
3979 4137 0.625316 TAGCCATTGGATGTGGTGCT 59.375 50.000 6.95 0.00 39.01 4.40
3980 4138 0.625316 AGCCATTGGATGTGGTGCTA 59.375 50.000 6.95 0.00 39.01 3.49
3981 4139 1.216175 AGCCATTGGATGTGGTGCTAT 59.784 47.619 6.95 0.00 39.01 2.97
3982 4140 2.442878 AGCCATTGGATGTGGTGCTATA 59.557 45.455 6.95 0.00 39.01 1.31
3983 4141 3.117550 AGCCATTGGATGTGGTGCTATAA 60.118 43.478 6.95 0.00 39.01 0.98
3984 4142 3.254166 GCCATTGGATGTGGTGCTATAAG 59.746 47.826 6.95 0.00 39.01 1.73
3985 4143 4.717877 CCATTGGATGTGGTGCTATAAGA 58.282 43.478 0.00 0.00 31.96 2.10
3986 4144 5.319453 CCATTGGATGTGGTGCTATAAGAT 58.681 41.667 0.00 0.00 31.96 2.40
3987 4145 5.182570 CCATTGGATGTGGTGCTATAAGATG 59.817 44.000 0.00 0.00 31.96 2.90
3988 4146 3.743521 TGGATGTGGTGCTATAAGATGC 58.256 45.455 0.00 0.00 0.00 3.91
3989 4147 2.738846 GGATGTGGTGCTATAAGATGCG 59.261 50.000 0.00 0.00 0.00 4.73
3990 4148 2.979814 TGTGGTGCTATAAGATGCGT 57.020 45.000 0.00 0.00 0.00 5.24
3991 4149 2.549926 TGTGGTGCTATAAGATGCGTG 58.450 47.619 0.00 0.00 0.00 5.34
3992 4150 2.093711 TGTGGTGCTATAAGATGCGTGT 60.094 45.455 0.00 0.00 0.00 4.49
3993 4151 2.285220 GTGGTGCTATAAGATGCGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
3994 4152 2.093711 TGGTGCTATAAGATGCGTGTGT 60.094 45.455 0.00 0.00 0.00 3.72
3995 4153 2.285220 GGTGCTATAAGATGCGTGTGTG 59.715 50.000 0.00 0.00 0.00 3.82
3996 4154 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
3997 4155 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
3998 4156 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
3999 4157 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
4000 4158 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
4001 4159 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
4002 4160 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
4003 4161 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
4004 4162 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
4005 4163 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
4006 4164 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
4007 4165 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
4008 4166 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
4009 4167 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
4010 4168 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
4011 4169 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
4012 4170 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
4013 4171 0.036765 TGCTGACGTGGGTTGTATCC 60.037 55.000 0.00 0.00 0.00 2.59
4014 4172 1.082117 GCTGACGTGGGTTGTATCCG 61.082 60.000 0.00 0.00 0.00 4.18
4015 4173 0.245539 CTGACGTGGGTTGTATCCGT 59.754 55.000 0.00 0.00 0.00 4.69
4016 4174 0.680618 TGACGTGGGTTGTATCCGTT 59.319 50.000 0.00 0.00 0.00 4.44
4017 4175 1.337074 TGACGTGGGTTGTATCCGTTC 60.337 52.381 0.00 0.00 0.00 3.95
4018 4176 0.971386 ACGTGGGTTGTATCCGTTCT 59.029 50.000 0.00 0.00 0.00 3.01
4019 4177 1.345415 ACGTGGGTTGTATCCGTTCTT 59.655 47.619 0.00 0.00 0.00 2.52
4020 4178 1.730064 CGTGGGTTGTATCCGTTCTTG 59.270 52.381 0.00 0.00 0.00 3.02
4021 4179 2.774687 GTGGGTTGTATCCGTTCTTGT 58.225 47.619 0.00 0.00 0.00 3.16
4022 4180 3.143728 GTGGGTTGTATCCGTTCTTGTT 58.856 45.455 0.00 0.00 0.00 2.83
4023 4181 3.566742 GTGGGTTGTATCCGTTCTTGTTT 59.433 43.478 0.00 0.00 0.00 2.83
4024 4182 4.037089 GTGGGTTGTATCCGTTCTTGTTTT 59.963 41.667 0.00 0.00 0.00 2.43
4025 4183 4.276431 TGGGTTGTATCCGTTCTTGTTTTC 59.724 41.667 0.00 0.00 0.00 2.29
4026 4184 4.320714 GGGTTGTATCCGTTCTTGTTTTCC 60.321 45.833 0.00 0.00 0.00 3.13
4027 4185 4.276431 GGTTGTATCCGTTCTTGTTTTCCA 59.724 41.667 0.00 0.00 0.00 3.53
4028 4186 5.449304 GTTGTATCCGTTCTTGTTTTCCAG 58.551 41.667 0.00 0.00 0.00 3.86
4029 4187 4.069304 TGTATCCGTTCTTGTTTTCCAGG 58.931 43.478 0.00 0.00 0.00 4.45
4030 4188 2.721425 TCCGTTCTTGTTTTCCAGGT 57.279 45.000 0.00 0.00 0.00 4.00
4031 4189 2.294074 TCCGTTCTTGTTTTCCAGGTG 58.706 47.619 0.00 0.00 0.00 4.00
4032 4190 2.092861 TCCGTTCTTGTTTTCCAGGTGA 60.093 45.455 0.00 0.00 0.00 4.02
4033 4191 2.685897 CCGTTCTTGTTTTCCAGGTGAA 59.314 45.455 0.00 0.00 0.00 3.18
4034 4192 3.317993 CCGTTCTTGTTTTCCAGGTGAAT 59.682 43.478 0.00 0.00 31.67 2.57
4035 4193 4.290155 CGTTCTTGTTTTCCAGGTGAATG 58.710 43.478 0.00 0.00 31.67 2.67
4036 4194 4.036262 CGTTCTTGTTTTCCAGGTGAATGA 59.964 41.667 0.00 0.00 31.67 2.57
4037 4195 5.523369 GTTCTTGTTTTCCAGGTGAATGAG 58.477 41.667 0.00 0.00 31.67 2.90
4038 4196 5.047566 TCTTGTTTTCCAGGTGAATGAGA 57.952 39.130 0.00 0.00 31.67 3.27
4039 4197 4.821805 TCTTGTTTTCCAGGTGAATGAGAC 59.178 41.667 0.00 0.00 31.67 3.36
4040 4198 3.486383 TGTTTTCCAGGTGAATGAGACC 58.514 45.455 0.00 0.00 31.67 3.85
4041 4199 3.117701 TGTTTTCCAGGTGAATGAGACCA 60.118 43.478 0.00 0.00 35.76 4.02
4042 4200 3.874383 TTTCCAGGTGAATGAGACCAA 57.126 42.857 0.00 0.00 35.76 3.67
4043 4201 3.874383 TTCCAGGTGAATGAGACCAAA 57.126 42.857 0.00 0.00 35.76 3.28
4044 4202 4.387026 TTCCAGGTGAATGAGACCAAAT 57.613 40.909 0.00 0.00 35.76 2.32
4045 4203 4.387026 TCCAGGTGAATGAGACCAAATT 57.613 40.909 0.00 0.00 35.76 1.82
4046 4204 5.512942 TCCAGGTGAATGAGACCAAATTA 57.487 39.130 0.00 0.00 35.76 1.40
4047 4205 5.253330 TCCAGGTGAATGAGACCAAATTAC 58.747 41.667 0.00 0.00 35.76 1.89
4048 4206 4.094887 CCAGGTGAATGAGACCAAATTACG 59.905 45.833 0.00 0.00 35.76 3.18
4049 4207 4.695455 CAGGTGAATGAGACCAAATTACGT 59.305 41.667 0.00 0.00 35.76 3.57
4050 4208 4.935808 AGGTGAATGAGACCAAATTACGTC 59.064 41.667 0.00 0.00 35.76 4.34
4051 4209 4.935808 GGTGAATGAGACCAAATTACGTCT 59.064 41.667 6.98 6.98 42.02 4.18
4060 4218 7.589958 AGACCAAATTACGTCTCATCTAGAT 57.410 36.000 0.00 0.00 34.15 1.98
4061 4219 7.429633 AGACCAAATTACGTCTCATCTAGATG 58.570 38.462 24.32 24.32 45.40 2.90
4062 4220 7.285629 AGACCAAATTACGTCTCATCTAGATGA 59.714 37.037 29.17 29.17 42.99 2.92
4076 4234 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
4077 4235 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
4078 4236 7.475654 CATCTAGATGAGTTCTAGGTACTCCCT 60.476 44.444 25.78 16.34 44.99 4.20
4079 4237 5.475398 AGATGAGTTCTAGGTACTCCCTT 57.525 43.478 17.72 7.62 42.73 3.95
4080 4238 6.593759 AGATGAGTTCTAGGTACTCCCTTA 57.406 41.667 17.72 5.36 42.73 2.69
4081 4239 7.169287 AGATGAGTTCTAGGTACTCCCTTAT 57.831 40.000 17.72 8.74 42.73 1.73
4082 4240 8.290463 AGATGAGTTCTAGGTACTCCCTTATA 57.710 38.462 17.72 4.58 42.73 0.98
4083 4241 8.907050 AGATGAGTTCTAGGTACTCCCTTATAT 58.093 37.037 17.72 7.97 42.73 0.86
4109 4267 5.835113 AATCAAAGATCACCAATAACCCG 57.165 39.130 0.00 0.00 0.00 5.28
4110 4268 3.616219 TCAAAGATCACCAATAACCCGG 58.384 45.455 0.00 0.00 0.00 5.73
4111 4269 3.009695 TCAAAGATCACCAATAACCCGGT 59.990 43.478 0.00 0.00 35.27 5.28
4112 4270 4.225492 TCAAAGATCACCAATAACCCGGTA 59.775 41.667 0.00 0.00 32.98 4.02
4113 4271 3.832615 AGATCACCAATAACCCGGTAC 57.167 47.619 0.00 0.00 32.98 3.34
4114 4272 3.109151 AGATCACCAATAACCCGGTACA 58.891 45.455 0.00 0.00 32.98 2.90
4115 4273 3.520317 AGATCACCAATAACCCGGTACAA 59.480 43.478 0.00 0.00 32.98 2.41
4116 4274 4.165372 AGATCACCAATAACCCGGTACAAT 59.835 41.667 0.00 0.00 32.98 2.71
4117 4275 3.611970 TCACCAATAACCCGGTACAATG 58.388 45.455 0.00 0.00 32.98 2.82
4118 4276 2.098443 CACCAATAACCCGGTACAATGC 59.902 50.000 0.00 0.00 32.98 3.56
4119 4277 2.291024 ACCAATAACCCGGTACAATGCA 60.291 45.455 0.00 0.00 32.31 3.96
4120 4278 2.955660 CCAATAACCCGGTACAATGCAT 59.044 45.455 0.00 0.00 0.00 3.96
4121 4279 3.243367 CCAATAACCCGGTACAATGCATG 60.243 47.826 0.00 0.00 0.00 4.06
4122 4280 1.384525 TAACCCGGTACAATGCATGC 58.615 50.000 11.82 11.82 0.00 4.06
4123 4281 1.319614 AACCCGGTACAATGCATGCC 61.320 55.000 16.68 0.00 0.00 4.40
4124 4282 1.752310 CCCGGTACAATGCATGCCA 60.752 57.895 16.68 3.52 0.00 4.92
4125 4283 1.108727 CCCGGTACAATGCATGCCAT 61.109 55.000 16.68 6.01 35.06 4.40
4126 4284 0.311790 CCGGTACAATGCATGCCATC 59.688 55.000 16.68 0.00 31.43 3.51
4127 4285 1.023502 CGGTACAATGCATGCCATCA 58.976 50.000 16.68 0.00 31.43 3.07
4128 4286 1.002142 CGGTACAATGCATGCCATCAG 60.002 52.381 16.68 7.85 31.43 2.90
4129 4287 2.300433 GGTACAATGCATGCCATCAGA 58.700 47.619 16.68 0.00 31.43 3.27
4130 4288 2.689471 GGTACAATGCATGCCATCAGAA 59.311 45.455 16.68 0.00 31.43 3.02
4131 4289 2.953466 ACAATGCATGCCATCAGAAC 57.047 45.000 16.68 0.00 31.43 3.01
4132 4290 2.172679 ACAATGCATGCCATCAGAACA 58.827 42.857 16.68 0.00 31.43 3.18
4133 4291 2.094390 ACAATGCATGCCATCAGAACAC 60.094 45.455 16.68 0.00 31.43 3.32
4134 4292 1.842052 ATGCATGCCATCAGAACACA 58.158 45.000 16.68 0.00 0.00 3.72
4135 4293 0.883153 TGCATGCCATCAGAACACAC 59.117 50.000 16.68 0.00 0.00 3.82
4136 4294 0.179181 GCATGCCATCAGAACACACG 60.179 55.000 6.36 0.00 0.00 4.49
4137 4295 0.179181 CATGCCATCAGAACACACGC 60.179 55.000 0.00 0.00 0.00 5.34
4138 4296 0.606130 ATGCCATCAGAACACACGCA 60.606 50.000 0.00 0.00 0.00 5.24
4139 4297 1.207593 GCCATCAGAACACACGCAC 59.792 57.895 0.00 0.00 0.00 5.34
4140 4298 1.506309 GCCATCAGAACACACGCACA 61.506 55.000 0.00 0.00 0.00 4.57
4141 4299 0.235665 CCATCAGAACACACGCACAC 59.764 55.000 0.00 0.00 0.00 3.82
4142 4300 0.936600 CATCAGAACACACGCACACA 59.063 50.000 0.00 0.00 0.00 3.72
4143 4301 0.937304 ATCAGAACACACGCACACAC 59.063 50.000 0.00 0.00 0.00 3.82
4144 4302 1.087202 TCAGAACACACGCACACACC 61.087 55.000 0.00 0.00 0.00 4.16
4145 4303 1.817941 AGAACACACGCACACACCC 60.818 57.895 0.00 0.00 0.00 4.61
4146 4304 2.045829 AACACACGCACACACCCA 60.046 55.556 0.00 0.00 0.00 4.51
4147 4305 1.649390 GAACACACGCACACACCCAA 61.649 55.000 0.00 0.00 0.00 4.12
4148 4306 1.653094 AACACACGCACACACCCAAG 61.653 55.000 0.00 0.00 0.00 3.61
4149 4307 1.817520 CACACGCACACACCCAAGA 60.818 57.895 0.00 0.00 0.00 3.02
4150 4308 1.817941 ACACGCACACACCCAAGAC 60.818 57.895 0.00 0.00 0.00 3.01
4151 4309 1.817520 CACGCACACACCCAAGACA 60.818 57.895 0.00 0.00 0.00 3.41
4152 4310 1.523711 ACGCACACACCCAAGACAG 60.524 57.895 0.00 0.00 0.00 3.51
4153 4311 2.253758 CGCACACACCCAAGACAGG 61.254 63.158 0.00 0.00 0.00 4.00
4154 4312 1.148273 GCACACACCCAAGACAGGA 59.852 57.895 0.00 0.00 0.00 3.86
4155 4313 0.250901 GCACACACCCAAGACAGGAT 60.251 55.000 0.00 0.00 0.00 3.24
4156 4314 1.003118 GCACACACCCAAGACAGGATA 59.997 52.381 0.00 0.00 0.00 2.59
4157 4315 2.699954 CACACACCCAAGACAGGATAC 58.300 52.381 0.00 0.00 0.00 2.24
4158 4316 2.038426 CACACACCCAAGACAGGATACA 59.962 50.000 0.00 0.00 41.41 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.704899 ACAAAAAGGTAGGAAAACAAGATTTCG 59.295 33.333 0.00 0.00 39.64 3.46
177 178 1.021390 CGGTTGTGGTCAGCAGATCC 61.021 60.000 0.00 0.00 0.00 3.36
266 268 1.021390 CAGCCACGAACACCCAGATC 61.021 60.000 0.00 0.00 0.00 2.75
438 446 1.737029 CGTGAGCGACATGGAAGATGT 60.737 52.381 0.00 0.00 41.33 3.06
560 585 2.255881 TGCGTCTCGGTCGTTCTGA 61.256 57.895 0.00 0.00 0.00 3.27
651 676 3.127376 AGGACGTTAGTGTTTTTGCGTTT 59.873 39.130 0.00 0.00 32.56 3.60
816 842 2.434843 ATTCTGCGCTCGGGATCCA 61.435 57.895 15.23 0.00 0.00 3.41
890 916 9.891828 TTTGTTGTCATCACAATATTAAGACAC 57.108 29.630 0.00 0.00 44.47 3.67
910 936 5.752955 ACGATTCTGGAAAACCATTTTGTTG 59.247 36.000 0.00 0.00 31.94 3.33
918 944 3.558321 CCCACTACGATTCTGGAAAACCA 60.558 47.826 0.00 0.00 0.00 3.67
957 983 1.070105 TTTCTAACGGCCTGCGTGT 59.930 52.632 0.00 0.00 0.00 4.49
958 984 0.949105 AGTTTCTAACGGCCTGCGTG 60.949 55.000 0.00 0.00 36.23 5.34
959 985 0.250166 AAGTTTCTAACGGCCTGCGT 60.250 50.000 0.00 0.00 36.23 5.24
1015 1042 3.003689 CACTTCAACCTCATGTTCCACAC 59.996 47.826 0.00 0.00 34.00 3.82
1074 1106 1.071857 ACAACGAGGAAAAGGAGGACC 59.928 52.381 0.00 0.00 0.00 4.46
1081 1113 0.310854 GTGGCCACAACGAGGAAAAG 59.689 55.000 31.23 0.00 0.00 2.27
1202 1234 2.016961 CAGCGATTGATGGGGAACG 58.983 57.895 0.00 0.00 0.00 3.95
1218 1250 4.463879 CAGGAGGGTGAGCGGCAG 62.464 72.222 1.45 0.00 0.00 4.85
1268 1300 0.840722 GGTGGGGGTCTTGGAAGAGA 60.841 60.000 0.00 0.00 35.32 3.10
1279 1311 3.182996 GAGGTTGGTGGTGGGGGT 61.183 66.667 0.00 0.00 0.00 4.95
1318 1350 0.543174 AGGAAGAGCAGGGTTCTCGT 60.543 55.000 0.00 0.00 35.79 4.18
1338 1370 1.824329 GAGGATGGAGGCGACGAGA 60.824 63.158 0.00 0.00 0.00 4.04
1440 1472 1.416401 TCGGGTTCTTCTTCTTGCTGT 59.584 47.619 0.00 0.00 0.00 4.40
1448 1480 0.400594 CCCTTGGTCGGGTTCTTCTT 59.599 55.000 0.00 0.00 39.51 2.52
1449 1481 1.489560 CCCCTTGGTCGGGTTCTTCT 61.490 60.000 0.00 0.00 43.06 2.85
1450 1482 1.002502 CCCCTTGGTCGGGTTCTTC 60.003 63.158 0.00 0.00 43.06 2.87
1551 1586 1.098712 CGTCCTCTTCCTCCTCCTCG 61.099 65.000 0.00 0.00 0.00 4.63
1927 1974 6.022315 TCATTTCCCAAAATCTACCCAACAT 58.978 36.000 0.00 0.00 32.69 2.71
1930 1977 7.236432 TGATTTCATTTCCCAAAATCTACCCAA 59.764 33.333 8.12 0.00 39.20 4.12
2027 2145 7.290964 TTCGCATCGAGATATTGGCATACAAT 61.291 38.462 0.00 0.00 43.85 2.71
2029 2147 3.056891 TCGCATCGAGATATTGGCATACA 60.057 43.478 0.00 0.00 0.00 2.29
2039 2161 6.923508 ACTGTAATCAAATTCGCATCGAGATA 59.076 34.615 0.00 0.00 37.14 1.98
2040 2162 5.755375 ACTGTAATCAAATTCGCATCGAGAT 59.245 36.000 0.00 0.00 37.14 2.75
2044 2166 3.720818 GCACTGTAATCAAATTCGCATCG 59.279 43.478 0.00 0.00 0.00 3.84
2056 2178 7.766278 TCCTTGAGAAATTCTAGCACTGTAATC 59.234 37.037 0.00 0.00 0.00 1.75
2057 2179 7.624549 TCCTTGAGAAATTCTAGCACTGTAAT 58.375 34.615 0.00 0.00 0.00 1.89
2063 2190 7.379797 GTGTTTTTCCTTGAGAAATTCTAGCAC 59.620 37.037 0.00 0.00 43.93 4.40
2069 2196 7.041721 AGTTGGTGTTTTTCCTTGAGAAATTC 58.958 34.615 0.00 0.00 43.93 2.17
2104 2232 7.071196 ACCAGCCATCAAAGATTAGACAGTATA 59.929 37.037 0.00 0.00 0.00 1.47
2123 2251 8.272173 AGCTTAATTTCTTATTAGTACCAGCCA 58.728 33.333 0.00 0.00 0.00 4.75
2143 2271 9.528018 CCAAACAATTCAAAAAGTAGAGCTTAA 57.472 29.630 0.00 0.00 36.17 1.85
2145 2273 6.479990 GCCAAACAATTCAAAAAGTAGAGCTT 59.520 34.615 0.00 0.00 39.52 3.74
2146 2274 5.985530 GCCAAACAATTCAAAAAGTAGAGCT 59.014 36.000 0.00 0.00 0.00 4.09
2147 2275 5.985530 AGCCAAACAATTCAAAAAGTAGAGC 59.014 36.000 0.00 0.00 0.00 4.09
2148 2276 8.424274 AAAGCCAAACAATTCAAAAAGTAGAG 57.576 30.769 0.00 0.00 0.00 2.43
2149 2277 8.785329 AAAAGCCAAACAATTCAAAAAGTAGA 57.215 26.923 0.00 0.00 0.00 2.59
2150 2278 9.276397 CAAAAAGCCAAACAATTCAAAAAGTAG 57.724 29.630 0.00 0.00 0.00 2.57
2151 2279 9.003658 TCAAAAAGCCAAACAATTCAAAAAGTA 57.996 25.926 0.00 0.00 0.00 2.24
2152 2280 7.880105 TCAAAAAGCCAAACAATTCAAAAAGT 58.120 26.923 0.00 0.00 0.00 2.66
2153 2281 8.739649 TTCAAAAAGCCAAACAATTCAAAAAG 57.260 26.923 0.00 0.00 0.00 2.27
2154 2282 9.351570 GATTCAAAAAGCCAAACAATTCAAAAA 57.648 25.926 0.00 0.00 0.00 1.94
2155 2283 7.972832 GGATTCAAAAAGCCAAACAATTCAAAA 59.027 29.630 0.00 0.00 40.81 2.44
2156 2284 7.479150 GGATTCAAAAAGCCAAACAATTCAAA 58.521 30.769 0.00 0.00 40.81 2.69
2157 2285 7.025485 GGATTCAAAAAGCCAAACAATTCAA 57.975 32.000 0.00 0.00 40.81 2.69
2158 2286 6.616774 GGATTCAAAAAGCCAAACAATTCA 57.383 33.333 0.00 0.00 40.81 2.57
2168 2296 9.794685 TTTTAAATTGTTTGGATTCAAAAAGCC 57.205 25.926 0.00 0.00 43.56 4.35
2199 2327 8.278639 TGGTTCCCTCTTAATTAAATGCAGATA 58.721 33.333 0.00 0.00 0.00 1.98
2210 2339 6.860034 ACCTAGTTTTGGTTCCCTCTTAATT 58.140 36.000 0.00 0.00 33.34 1.40
2271 2400 8.519526 CAAGAAGAGCCTCCTTATAGTGTATAG 58.480 40.741 0.00 0.00 0.00 1.31
2276 2405 5.606348 ACAAGAAGAGCCTCCTTATAGTG 57.394 43.478 0.00 0.00 0.00 2.74
2279 2408 8.090788 ACATAAACAAGAAGAGCCTCCTTATA 57.909 34.615 0.00 0.00 0.00 0.98
2280 2409 6.963322 ACATAAACAAGAAGAGCCTCCTTAT 58.037 36.000 0.00 0.00 0.00 1.73
2283 2412 4.917906 ACATAAACAAGAAGAGCCTCCT 57.082 40.909 0.00 0.00 0.00 3.69
2284 2413 6.038714 CCAATACATAAACAAGAAGAGCCTCC 59.961 42.308 0.00 0.00 0.00 4.30
2285 2414 6.823689 TCCAATACATAAACAAGAAGAGCCTC 59.176 38.462 0.00 0.00 0.00 4.70
2286 2415 6.721318 TCCAATACATAAACAAGAAGAGCCT 58.279 36.000 0.00 0.00 0.00 4.58
2287 2416 7.283127 TCATCCAATACATAAACAAGAAGAGCC 59.717 37.037 0.00 0.00 0.00 4.70
2326 2457 6.494666 TCTATTTCCCTCGTGGATTTATGT 57.505 37.500 4.76 0.00 44.66 2.29
2338 2489 3.961408 TCTACCACAGCTCTATTTCCCTC 59.039 47.826 0.00 0.00 0.00 4.30
2346 2497 7.342026 TCACATAAGAATTCTACCACAGCTCTA 59.658 37.037 8.75 0.00 0.00 2.43
2348 2499 6.341316 TCACATAAGAATTCTACCACAGCTC 58.659 40.000 8.75 0.00 0.00 4.09
2385 2536 5.242838 TCAAAGGCCTGAAATACAAATTCGT 59.757 36.000 5.69 0.00 0.00 3.85
2388 2539 5.934043 GCTTCAAAGGCCTGAAATACAAATT 59.066 36.000 5.69 0.00 34.96 1.82
2409 2560 2.949909 TACGACCCGGTGCATGCTT 61.950 57.895 20.33 0.00 0.00 3.91
2434 2585 8.811017 TCCTTGTTATAAAATCAGAATGGCAAA 58.189 29.630 0.00 0.00 36.16 3.68
2480 2631 7.568349 AGCAAGTTTCACTAATGGATGATAGA 58.432 34.615 0.00 0.00 0.00 1.98
2482 2633 8.579850 AAAGCAAGTTTCACTAATGGATGATA 57.420 30.769 0.00 0.00 0.00 2.15
2502 2653 5.280011 CCAGGAAGGACTAGAGTAAAAAGCA 60.280 44.000 0.00 0.00 41.22 3.91
2505 2656 4.322499 CGCCAGGAAGGACTAGAGTAAAAA 60.322 45.833 0.00 0.00 41.22 1.94
2513 2664 1.258445 ACCACGCCAGGAAGGACTAG 61.258 60.000 0.00 0.00 41.22 2.57
2514 2665 0.040058 TACCACGCCAGGAAGGACTA 59.960 55.000 0.00 0.00 41.22 2.59
2519 2670 2.980568 TGTAAATACCACGCCAGGAAG 58.019 47.619 0.00 0.00 0.00 3.46
2527 2678 5.172934 TCAGCTAGGTTTGTAAATACCACG 58.827 41.667 0.00 0.00 36.87 4.94
2552 2703 6.727697 AGAAATGGGAAATGTTGAGAGGAAAT 59.272 34.615 0.00 0.00 0.00 2.17
2556 2707 4.381292 GCAGAAATGGGAAATGTTGAGAGG 60.381 45.833 0.00 0.00 0.00 3.69
2558 2709 4.151121 TGCAGAAATGGGAAATGTTGAGA 58.849 39.130 0.00 0.00 0.00 3.27
2559 2710 4.491676 CTGCAGAAATGGGAAATGTTGAG 58.508 43.478 8.42 0.00 0.00 3.02
2562 2714 2.568509 CCCTGCAGAAATGGGAAATGTT 59.431 45.455 17.39 0.00 43.47 2.71
2568 2720 0.620556 GAGTCCCTGCAGAAATGGGA 59.379 55.000 17.39 11.39 46.78 4.37
2576 2728 1.376424 ACAATGCGAGTCCCTGCAG 60.376 57.895 6.78 6.78 45.52 4.41
2608 2760 3.277142 AAAACAGTTGGTCCTTCGAGT 57.723 42.857 0.00 0.00 0.00 4.18
2617 2769 3.068590 CCAGCATCTCAAAAACAGTTGGT 59.931 43.478 0.00 0.00 0.00 3.67
2656 2808 2.292845 GACCCTTTCCTCGGATACTACG 59.707 54.545 0.00 0.00 0.00 3.51
2658 2810 2.425392 GGGACCCTTTCCTCGGATACTA 60.425 54.545 2.09 0.00 45.09 1.82
2760 2912 7.707624 TTCCATTAGAAATCAGAAACATGCT 57.292 32.000 0.00 0.00 0.00 3.79
2852 3008 1.555075 CGAAAGTCCCTTGGATCCTCA 59.445 52.381 14.23 0.00 32.73 3.86
2867 3023 0.453390 GGCAAAGATGAGGCCGAAAG 59.547 55.000 0.00 0.00 38.04 2.62
2896 3052 6.938507 ACATATCAAACCTGCAAATGTTCAT 58.061 32.000 0.00 0.00 0.00 2.57
2900 3056 6.594788 AGAACATATCAAACCTGCAAATGT 57.405 33.333 0.00 0.00 0.00 2.71
2931 3087 1.887198 GACACGGAGACTTCAGAAGGA 59.113 52.381 14.90 0.00 0.00 3.36
2933 3089 1.401670 CGGACACGGAGACTTCAGAAG 60.402 57.143 8.77 8.77 36.18 2.85
2940 3096 2.597805 ACAGCGGACACGGAGACT 60.598 61.111 0.00 0.00 41.36 3.24
2946 3102 0.655733 AAAGAAACACAGCGGACACG 59.344 50.000 0.00 0.00 44.63 4.49
2947 3103 1.400494 ACAAAGAAACACAGCGGACAC 59.600 47.619 0.00 0.00 0.00 3.67
2965 3121 2.361757 GCATATACAATGCCCTGCAACA 59.638 45.455 0.00 0.00 43.62 3.33
3050 3206 0.317479 AACTCTTGTCCGGGAACTCG 59.683 55.000 0.00 0.00 0.00 4.18
3091 3247 2.031120 CTTTTGACTCCACTTTGGCCA 58.969 47.619 0.00 0.00 37.47 5.36
3190 3346 5.516044 TGGAGCTACCTCACTAAGTATGAA 58.484 41.667 0.00 0.00 39.96 2.57
3209 3365 5.164051 CGCATAAATACGCAACTATCTGGAG 60.164 44.000 0.00 0.00 0.00 3.86
3229 3385 3.191162 ACTTTGTGTCATTGTATGCGCAT 59.809 39.130 28.23 28.23 30.92 4.73
3273 3429 9.499479 CCTTCACTTATCTTCATTATACTGCAT 57.501 33.333 0.00 0.00 0.00 3.96
3274 3430 8.704668 TCCTTCACTTATCTTCATTATACTGCA 58.295 33.333 0.00 0.00 0.00 4.41
3275 3431 9.202273 CTCCTTCACTTATCTTCATTATACTGC 57.798 37.037 0.00 0.00 0.00 4.40
3350 3506 3.561503 GCAACCGTTTGAGGATTAACAC 58.438 45.455 0.00 0.00 34.24 3.32
3403 3559 8.669243 AGAAATTAGAAGGTCTTAAGCATTTCG 58.331 33.333 0.00 0.00 34.65 3.46
3448 3604 2.708386 AAGACGAAGAGAGGTCAACG 57.292 50.000 0.00 0.00 35.63 4.10
3452 3608 5.326200 TCCATTTAAGACGAAGAGAGGTC 57.674 43.478 0.00 0.00 0.00 3.85
3470 3626 2.771943 TCGTTCCAGAATTAGCCTCCAT 59.228 45.455 0.00 0.00 0.00 3.41
3480 3636 2.509336 CGGCGCTCGTTCCAGAAT 60.509 61.111 7.64 0.00 0.00 2.40
3507 3663 1.601430 TCAGCTCTCATCATCGAGACG 59.399 52.381 0.00 0.00 37.12 4.18
3552 3708 6.424812 GCAAAAGGAAGACATTTACAAGCATT 59.575 34.615 0.00 0.00 29.78 3.56
3553 3709 5.928264 GCAAAAGGAAGACATTTACAAGCAT 59.072 36.000 0.00 0.00 29.78 3.79
3561 3717 1.335872 CCGCGCAAAAGGAAGACATTT 60.336 47.619 8.75 0.00 0.00 2.32
3577 3733 4.675510 TGACTTTAACTAGTATTCCCGCG 58.324 43.478 0.00 0.00 0.00 6.46
3589 3745 3.418684 ACCAGCCGAATGACTTTAACT 57.581 42.857 0.00 0.00 0.00 2.24
3611 3767 3.825143 AGCACAAAGTTGAGCCAAATT 57.175 38.095 9.44 0.00 44.29 1.82
3623 3779 7.263100 TGCATAAGTTCCATATAGCACAAAG 57.737 36.000 0.00 0.00 0.00 2.77
3643 3799 6.044682 GCCTATTCTTACAGCAAAAATGCAT 58.955 36.000 0.00 0.00 37.25 3.96
3672 3828 7.197703 TCTAAACACGATTTCCCTTTTTGTTC 58.802 34.615 0.00 0.00 0.00 3.18
3696 3852 6.695278 TGTTCGATCAACTGTTTCCATTTTTC 59.305 34.615 0.00 0.00 35.79 2.29
3740 3898 7.886338 TGTATGACGTATCTCATCTGCTTAAT 58.114 34.615 0.00 0.00 32.86 1.40
3796 3954 0.798776 GCACTGTGTGGCATACTGTC 59.201 55.000 20.82 13.35 33.64 3.51
3930 4088 8.286191 AGGTGAATGAGACCAAATTAAATCTC 57.714 34.615 0.00 6.03 38.46 2.75
3931 4089 8.655935 AAGGTGAATGAGACCAAATTAAATCT 57.344 30.769 0.00 0.00 35.76 2.40
3932 4090 9.710900 AAAAGGTGAATGAGACCAAATTAAATC 57.289 29.630 0.00 0.00 35.76 2.17
3937 4095 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
3938 4096 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
3939 4097 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
3940 4098 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
3941 4099 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
3942 4100 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
3943 4101 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
3944 4102 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
3945 4103 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
3946 4104 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
3947 4105 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
3948 4106 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
3949 4107 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
3950 4108 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
3951 4109 5.221303 CCACATCCAATGGCTATAAAAGGTG 60.221 44.000 0.00 0.00 33.60 4.00
3952 4110 4.895297 CCACATCCAATGGCTATAAAAGGT 59.105 41.667 0.00 0.00 33.60 3.50
3953 4111 4.895297 ACCACATCCAATGGCTATAAAAGG 59.105 41.667 0.00 0.00 41.31 3.11
3954 4112 5.737063 GCACCACATCCAATGGCTATAAAAG 60.737 44.000 0.00 0.00 41.31 2.27
3955 4113 4.099266 GCACCACATCCAATGGCTATAAAA 59.901 41.667 0.00 0.00 41.31 1.52
3956 4114 3.636300 GCACCACATCCAATGGCTATAAA 59.364 43.478 0.00 0.00 41.31 1.40
3957 4115 3.117550 AGCACCACATCCAATGGCTATAA 60.118 43.478 0.00 0.00 41.31 0.98
3958 4116 2.442878 AGCACCACATCCAATGGCTATA 59.557 45.455 0.00 0.00 41.31 1.31
3959 4117 1.216175 AGCACCACATCCAATGGCTAT 59.784 47.619 0.00 0.00 41.31 2.97
3960 4118 0.625316 AGCACCACATCCAATGGCTA 59.375 50.000 0.00 0.00 41.31 3.93
3961 4119 0.625316 TAGCACCACATCCAATGGCT 59.375 50.000 0.00 0.00 41.31 4.75
3962 4120 1.696063 ATAGCACCACATCCAATGGC 58.304 50.000 0.00 0.00 41.31 4.40
3963 4121 4.717877 TCTTATAGCACCACATCCAATGG 58.282 43.478 0.00 0.00 43.43 3.16
3964 4122 5.335426 GCATCTTATAGCACCACATCCAATG 60.335 44.000 0.00 0.00 0.00 2.82
3965 4123 4.763793 GCATCTTATAGCACCACATCCAAT 59.236 41.667 0.00 0.00 0.00 3.16
3966 4124 4.136796 GCATCTTATAGCACCACATCCAA 58.863 43.478 0.00 0.00 0.00 3.53
3967 4125 3.743521 GCATCTTATAGCACCACATCCA 58.256 45.455 0.00 0.00 0.00 3.41
3968 4126 2.738846 CGCATCTTATAGCACCACATCC 59.261 50.000 0.00 0.00 0.00 3.51
3969 4127 3.185188 CACGCATCTTATAGCACCACATC 59.815 47.826 0.00 0.00 0.00 3.06
3970 4128 3.133691 CACGCATCTTATAGCACCACAT 58.866 45.455 0.00 0.00 0.00 3.21
3971 4129 2.093711 ACACGCATCTTATAGCACCACA 60.094 45.455 0.00 0.00 0.00 4.17
3972 4130 2.285220 CACACGCATCTTATAGCACCAC 59.715 50.000 0.00 0.00 0.00 4.16
3973 4131 2.093711 ACACACGCATCTTATAGCACCA 60.094 45.455 0.00 0.00 0.00 4.17
3974 4132 2.285220 CACACACGCATCTTATAGCACC 59.715 50.000 0.00 0.00 0.00 5.01
3975 4133 2.285834 GCACACACGCATCTTATAGCAC 60.286 50.000 0.00 0.00 0.00 4.40
3976 4134 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
3977 4135 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
3978 4136 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
3979 4137 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
3980 4138 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
3981 4139 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
3982 4140 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
3983 4141 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
3984 4142 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
3985 4143 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
3986 4144 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
3987 4145 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
3988 4146 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
3989 4147 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
3990 4148 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
3991 4149 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
3992 4150 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
3993 4151 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
3994 4152 0.036765 GGATACAACCCACGTCAGCA 60.037 55.000 0.00 0.00 0.00 4.41
3995 4153 1.082117 CGGATACAACCCACGTCAGC 61.082 60.000 0.00 0.00 0.00 4.26
3996 4154 0.245539 ACGGATACAACCCACGTCAG 59.754 55.000 0.00 0.00 31.39 3.51
3997 4155 0.680618 AACGGATACAACCCACGTCA 59.319 50.000 0.00 0.00 36.69 4.35
3998 4156 1.067354 AGAACGGATACAACCCACGTC 60.067 52.381 0.00 0.00 36.69 4.34
3999 4157 0.971386 AGAACGGATACAACCCACGT 59.029 50.000 0.00 0.00 39.74 4.49
4000 4158 1.730064 CAAGAACGGATACAACCCACG 59.270 52.381 0.00 0.00 0.00 4.94
4001 4159 2.774687 ACAAGAACGGATACAACCCAC 58.225 47.619 0.00 0.00 0.00 4.61
4002 4160 3.495434 AACAAGAACGGATACAACCCA 57.505 42.857 0.00 0.00 0.00 4.51
4003 4161 4.320714 GGAAAACAAGAACGGATACAACCC 60.321 45.833 0.00 0.00 0.00 4.11
4004 4162 4.276431 TGGAAAACAAGAACGGATACAACC 59.724 41.667 0.00 0.00 0.00 3.77
4005 4163 5.427036 TGGAAAACAAGAACGGATACAAC 57.573 39.130 0.00 0.00 0.00 3.32
4006 4164 4.517453 CCTGGAAAACAAGAACGGATACAA 59.483 41.667 0.00 0.00 0.00 2.41
4007 4165 4.069304 CCTGGAAAACAAGAACGGATACA 58.931 43.478 0.00 0.00 0.00 2.29
4008 4166 4.070009 ACCTGGAAAACAAGAACGGATAC 58.930 43.478 0.00 0.00 0.00 2.24
4009 4167 4.069304 CACCTGGAAAACAAGAACGGATA 58.931 43.478 0.00 0.00 0.00 2.59
4010 4168 2.884639 CACCTGGAAAACAAGAACGGAT 59.115 45.455 0.00 0.00 0.00 4.18
4011 4169 2.092861 TCACCTGGAAAACAAGAACGGA 60.093 45.455 0.00 0.00 0.00 4.69
4012 4170 2.294074 TCACCTGGAAAACAAGAACGG 58.706 47.619 0.00 0.00 0.00 4.44
4013 4171 4.036262 TCATTCACCTGGAAAACAAGAACG 59.964 41.667 0.00 0.00 39.39 3.95
4014 4172 5.299279 TCTCATTCACCTGGAAAACAAGAAC 59.701 40.000 0.00 0.00 39.39 3.01
4015 4173 5.299279 GTCTCATTCACCTGGAAAACAAGAA 59.701 40.000 0.00 0.00 39.39 2.52
4016 4174 4.821805 GTCTCATTCACCTGGAAAACAAGA 59.178 41.667 0.00 0.00 39.39 3.02
4017 4175 4.022849 GGTCTCATTCACCTGGAAAACAAG 60.023 45.833 0.00 0.00 39.39 3.16
4018 4176 3.888930 GGTCTCATTCACCTGGAAAACAA 59.111 43.478 0.00 0.00 39.39 2.83
4019 4177 3.117701 TGGTCTCATTCACCTGGAAAACA 60.118 43.478 0.00 0.00 39.39 2.83
4020 4178 3.486383 TGGTCTCATTCACCTGGAAAAC 58.514 45.455 0.00 0.00 39.39 2.43
4021 4179 3.874383 TGGTCTCATTCACCTGGAAAA 57.126 42.857 0.00 0.00 39.39 2.29
4022 4180 3.874383 TTGGTCTCATTCACCTGGAAA 57.126 42.857 0.00 0.00 39.39 3.13
4023 4181 3.874383 TTTGGTCTCATTCACCTGGAA 57.126 42.857 0.00 0.00 40.46 3.53
4024 4182 4.387026 AATTTGGTCTCATTCACCTGGA 57.613 40.909 0.00 0.00 34.66 3.86
4025 4183 4.094887 CGTAATTTGGTCTCATTCACCTGG 59.905 45.833 0.00 0.00 34.66 4.45
4026 4184 4.695455 ACGTAATTTGGTCTCATTCACCTG 59.305 41.667 0.00 0.00 34.66 4.00
4027 4185 4.906618 ACGTAATTTGGTCTCATTCACCT 58.093 39.130 0.00 0.00 34.66 4.00
4028 4186 4.935808 AGACGTAATTTGGTCTCATTCACC 59.064 41.667 5.52 0.00 39.18 4.02
4036 4194 7.285629 TCATCTAGATGAGACGTAATTTGGTCT 59.714 37.037 27.93 9.96 45.71 3.85
4037 4195 7.426410 TCATCTAGATGAGACGTAATTTGGTC 58.574 38.462 27.93 1.46 42.42 4.02
4038 4196 7.348080 TCATCTAGATGAGACGTAATTTGGT 57.652 36.000 27.93 0.00 42.42 3.67
4083 4241 9.062524 CGGGTTATTGGTGATCTTTGATTTATA 57.937 33.333 0.00 0.00 0.00 0.98
4084 4242 7.014230 CCGGGTTATTGGTGATCTTTGATTTAT 59.986 37.037 0.00 0.00 0.00 1.40
4085 4243 6.320164 CCGGGTTATTGGTGATCTTTGATTTA 59.680 38.462 0.00 0.00 0.00 1.40
4086 4244 5.127031 CCGGGTTATTGGTGATCTTTGATTT 59.873 40.000 0.00 0.00 0.00 2.17
4087 4245 4.644685 CCGGGTTATTGGTGATCTTTGATT 59.355 41.667 0.00 0.00 0.00 2.57
4088 4246 4.207165 CCGGGTTATTGGTGATCTTTGAT 58.793 43.478 0.00 0.00 0.00 2.57
4089 4247 3.009695 ACCGGGTTATTGGTGATCTTTGA 59.990 43.478 6.32 0.00 37.02 2.69
4090 4248 3.352648 ACCGGGTTATTGGTGATCTTTG 58.647 45.455 6.32 0.00 37.02 2.77
4091 4249 3.732048 ACCGGGTTATTGGTGATCTTT 57.268 42.857 6.32 0.00 37.02 2.52
4092 4250 3.520317 TGTACCGGGTTATTGGTGATCTT 59.480 43.478 4.31 0.00 39.30 2.40
4093 4251 3.109151 TGTACCGGGTTATTGGTGATCT 58.891 45.455 4.31 0.00 39.30 2.75
4094 4252 3.547054 TGTACCGGGTTATTGGTGATC 57.453 47.619 4.31 0.00 39.30 2.92
4095 4253 4.204012 CATTGTACCGGGTTATTGGTGAT 58.796 43.478 4.31 0.00 39.30 3.06
4096 4254 3.611970 CATTGTACCGGGTTATTGGTGA 58.388 45.455 4.31 0.00 39.30 4.02
4097 4255 2.098443 GCATTGTACCGGGTTATTGGTG 59.902 50.000 4.31 0.00 39.30 4.17
4098 4256 2.291024 TGCATTGTACCGGGTTATTGGT 60.291 45.455 4.31 0.00 42.34 3.67
4099 4257 2.370349 TGCATTGTACCGGGTTATTGG 58.630 47.619 4.31 0.00 0.00 3.16
4100 4258 3.795150 GCATGCATTGTACCGGGTTATTG 60.795 47.826 14.21 3.55 0.00 1.90
4101 4259 2.360801 GCATGCATTGTACCGGGTTATT 59.639 45.455 14.21 0.00 0.00 1.40
4102 4260 1.953686 GCATGCATTGTACCGGGTTAT 59.046 47.619 14.21 0.00 0.00 1.89
4103 4261 1.384525 GCATGCATTGTACCGGGTTA 58.615 50.000 14.21 0.00 0.00 2.85
4104 4262 1.319614 GGCATGCATTGTACCGGGTT 61.320 55.000 21.36 0.00 0.00 4.11
4105 4263 1.752694 GGCATGCATTGTACCGGGT 60.753 57.895 21.36 4.46 0.00 5.28
4106 4264 1.108727 ATGGCATGCATTGTACCGGG 61.109 55.000 21.36 0.00 0.00 5.73
4107 4265 0.311790 GATGGCATGCATTGTACCGG 59.688 55.000 21.36 0.00 0.00 5.28
4108 4266 1.002142 CTGATGGCATGCATTGTACCG 60.002 52.381 21.36 0.00 0.00 4.02
4109 4267 2.300433 TCTGATGGCATGCATTGTACC 58.700 47.619 21.36 0.00 0.00 3.34
4110 4268 3.129113 TGTTCTGATGGCATGCATTGTAC 59.871 43.478 21.36 8.62 0.00 2.90
4111 4269 3.129113 GTGTTCTGATGGCATGCATTGTA 59.871 43.478 21.36 0.00 0.00 2.41
4112 4270 2.094390 GTGTTCTGATGGCATGCATTGT 60.094 45.455 21.36 1.12 0.00 2.71
4113 4271 2.094442 TGTGTTCTGATGGCATGCATTG 60.094 45.455 21.36 4.60 0.00 2.82
4114 4272 2.094390 GTGTGTTCTGATGGCATGCATT 60.094 45.455 21.36 5.56 0.00 3.56
4115 4273 1.475280 GTGTGTTCTGATGGCATGCAT 59.525 47.619 21.36 11.12 0.00 3.96
4116 4274 0.883153 GTGTGTTCTGATGGCATGCA 59.117 50.000 21.36 6.13 0.00 3.96
4117 4275 0.179181 CGTGTGTTCTGATGGCATGC 60.179 55.000 9.90 9.90 0.00 4.06
4118 4276 0.179181 GCGTGTGTTCTGATGGCATG 60.179 55.000 3.81 0.00 0.00 4.06
4119 4277 0.606130 TGCGTGTGTTCTGATGGCAT 60.606 50.000 0.00 0.00 0.00 4.40
4120 4278 1.227793 TGCGTGTGTTCTGATGGCA 60.228 52.632 0.00 0.00 0.00 4.92
4121 4279 1.207593 GTGCGTGTGTTCTGATGGC 59.792 57.895 0.00 0.00 0.00 4.40
4122 4280 0.235665 GTGTGCGTGTGTTCTGATGG 59.764 55.000 0.00 0.00 0.00 3.51
4123 4281 0.936600 TGTGTGCGTGTGTTCTGATG 59.063 50.000 0.00 0.00 0.00 3.07
4124 4282 0.937304 GTGTGTGCGTGTGTTCTGAT 59.063 50.000 0.00 0.00 0.00 2.90
4125 4283 1.087202 GGTGTGTGCGTGTGTTCTGA 61.087 55.000 0.00 0.00 0.00 3.27
4126 4284 1.351707 GGTGTGTGCGTGTGTTCTG 59.648 57.895 0.00 0.00 0.00 3.02
4127 4285 1.817941 GGGTGTGTGCGTGTGTTCT 60.818 57.895 0.00 0.00 0.00 3.01
4128 4286 1.649390 TTGGGTGTGTGCGTGTGTTC 61.649 55.000 0.00 0.00 0.00 3.18
4129 4287 1.653094 CTTGGGTGTGTGCGTGTGTT 61.653 55.000 0.00 0.00 0.00 3.32
4130 4288 2.045829 TTGGGTGTGTGCGTGTGT 60.046 55.556 0.00 0.00 0.00 3.72
4131 4289 1.817520 TCTTGGGTGTGTGCGTGTG 60.818 57.895 0.00 0.00 0.00 3.82
4132 4290 1.817941 GTCTTGGGTGTGTGCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
4133 4291 1.775039 CTGTCTTGGGTGTGTGCGTG 61.775 60.000 0.00 0.00 0.00 5.34
4134 4292 1.523711 CTGTCTTGGGTGTGTGCGT 60.524 57.895 0.00 0.00 0.00 5.24
4135 4293 2.253758 CCTGTCTTGGGTGTGTGCG 61.254 63.158 0.00 0.00 0.00 5.34
4136 4294 0.250901 ATCCTGTCTTGGGTGTGTGC 60.251 55.000 0.00 0.00 0.00 4.57
4137 4295 2.038426 TGTATCCTGTCTTGGGTGTGTG 59.962 50.000 0.00 0.00 0.00 3.82
4138 4296 2.334977 TGTATCCTGTCTTGGGTGTGT 58.665 47.619 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.