Multiple sequence alignment - TraesCS1A01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G119000 chr1A 100.000 2258 0 0 1 2258 128633284 128635541 0.000000e+00 4170
1 TraesCS1A01G119000 chr1A 92.683 164 10 2 56 219 30557027 30556866 3.750000e-58 235
2 TraesCS1A01G119000 chr1D 95.317 2050 69 19 219 2257 116944789 116946822 0.000000e+00 3229
3 TraesCS1A01G119000 chr1B 93.107 972 31 15 706 1669 179506877 179507820 0.000000e+00 1391
4 TraesCS1A01G119000 chr1B 97.581 496 10 2 221 715 179500548 179501042 0.000000e+00 848
5 TraesCS1A01G119000 chr1B 92.555 591 38 4 1668 2258 179507899 179508483 0.000000e+00 843
6 TraesCS1A01G119000 chr7B 93.293 164 11 0 56 219 10908932 10908769 2.240000e-60 243
7 TraesCS1A01G119000 chr4D 89.634 164 17 0 56 219 406236474 406236311 2.270000e-50 209
8 TraesCS1A01G119000 chr6A 88.415 164 18 1 56 219 7057917 7057755 1.770000e-46 196
9 TraesCS1A01G119000 chr2D 87.805 164 20 0 56 219 29071718 29071555 2.290000e-45 193
10 TraesCS1A01G119000 chr2B 87.195 164 10 2 56 219 11455880 11456032 2.300000e-40 176
11 TraesCS1A01G119000 chr4B 89.362 94 10 0 126 219 570191357 570191450 3.940000e-23 119
12 TraesCS1A01G119000 chr5A 77.976 168 30 7 56 219 52881755 52881919 5.130000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G119000 chr1A 128633284 128635541 2257 False 4170 4170 100.000 1 2258 1 chr1A.!!$F1 2257
1 TraesCS1A01G119000 chr1D 116944789 116946822 2033 False 3229 3229 95.317 219 2257 1 chr1D.!!$F1 2038
2 TraesCS1A01G119000 chr1B 179506877 179508483 1606 False 1117 1391 92.831 706 2258 2 chr1B.!!$F2 1552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.179 AATTCCTGCTACCTCCTGCG 59.821 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2113 0.534412 CGGTCAGGAATGCAGAGTCT 59.466 55.0 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.176589 ACTCCTACAAGAGACTAAATTCCTG 57.823 40.000 0.00 0.00 37.33 3.86
25 26 5.978814 TCCTACAAGAGACTAAATTCCTGC 58.021 41.667 0.00 0.00 0.00 4.85
26 27 5.721960 TCCTACAAGAGACTAAATTCCTGCT 59.278 40.000 0.00 0.00 0.00 4.24
27 28 6.895756 TCCTACAAGAGACTAAATTCCTGCTA 59.104 38.462 0.00 0.00 0.00 3.49
28 29 6.981559 CCTACAAGAGACTAAATTCCTGCTAC 59.018 42.308 0.00 0.00 0.00 3.58
29 30 5.735766 ACAAGAGACTAAATTCCTGCTACC 58.264 41.667 0.00 0.00 0.00 3.18
30 31 5.485708 ACAAGAGACTAAATTCCTGCTACCT 59.514 40.000 0.00 0.00 0.00 3.08
31 32 5.862678 AGAGACTAAATTCCTGCTACCTC 57.137 43.478 0.00 0.00 0.00 3.85
32 33 4.651962 AGAGACTAAATTCCTGCTACCTCC 59.348 45.833 0.00 0.00 0.00 4.30
33 34 4.625963 AGACTAAATTCCTGCTACCTCCT 58.374 43.478 0.00 0.00 0.00 3.69
34 35 4.407296 AGACTAAATTCCTGCTACCTCCTG 59.593 45.833 0.00 0.00 0.00 3.86
35 36 2.426842 AAATTCCTGCTACCTCCTGC 57.573 50.000 0.00 0.00 0.00 4.85
36 37 0.179000 AATTCCTGCTACCTCCTGCG 59.821 55.000 0.00 0.00 0.00 5.18
37 38 0.687757 ATTCCTGCTACCTCCTGCGA 60.688 55.000 0.00 0.00 0.00 5.10
38 39 1.605058 TTCCTGCTACCTCCTGCGAC 61.605 60.000 0.00 0.00 0.00 5.19
39 40 2.351244 CCTGCTACCTCCTGCGACA 61.351 63.158 0.00 0.00 0.00 4.35
40 41 1.153745 CTGCTACCTCCTGCGACAC 60.154 63.158 0.00 0.00 0.00 3.67
41 42 1.877576 CTGCTACCTCCTGCGACACA 61.878 60.000 0.00 0.00 0.00 3.72
42 43 1.257750 TGCTACCTCCTGCGACACAT 61.258 55.000 0.00 0.00 0.00 3.21
43 44 0.807667 GCTACCTCCTGCGACACATG 60.808 60.000 0.00 0.00 0.00 3.21
44 45 0.807667 CTACCTCCTGCGACACATGC 60.808 60.000 0.00 0.00 0.00 4.06
45 46 1.540435 TACCTCCTGCGACACATGCA 61.540 55.000 0.00 0.00 40.70 3.96
46 47 1.672030 CCTCCTGCGACACATGCAA 60.672 57.895 0.00 0.00 42.70 4.08
47 48 1.642037 CCTCCTGCGACACATGCAAG 61.642 60.000 0.00 0.00 42.70 4.01
48 49 0.671472 CTCCTGCGACACATGCAAGA 60.671 55.000 0.00 0.00 42.70 3.02
49 50 0.671472 TCCTGCGACACATGCAAGAG 60.671 55.000 0.00 0.00 42.70 2.85
50 51 0.952497 CCTGCGACACATGCAAGAGT 60.952 55.000 0.00 0.00 42.70 3.24
51 52 0.870393 CTGCGACACATGCAAGAGTT 59.130 50.000 0.00 0.00 42.70 3.01
52 53 2.068519 CTGCGACACATGCAAGAGTTA 58.931 47.619 0.00 0.00 42.70 2.24
53 54 1.798223 TGCGACACATGCAAGAGTTAC 59.202 47.619 0.00 0.00 39.87 2.50
54 55 1.798223 GCGACACATGCAAGAGTTACA 59.202 47.619 0.00 0.00 0.00 2.41
55 56 2.416547 GCGACACATGCAAGAGTTACAT 59.583 45.455 0.00 0.00 0.00 2.29
56 57 3.120199 GCGACACATGCAAGAGTTACATT 60.120 43.478 0.00 0.00 0.00 2.71
57 58 4.613622 GCGACACATGCAAGAGTTACATTT 60.614 41.667 0.00 0.00 0.00 2.32
58 59 5.451908 CGACACATGCAAGAGTTACATTTT 58.548 37.500 0.00 0.00 0.00 1.82
59 60 5.914635 CGACACATGCAAGAGTTACATTTTT 59.085 36.000 0.00 0.00 0.00 1.94
60 61 6.086765 CGACACATGCAAGAGTTACATTTTTC 59.913 38.462 0.00 0.00 0.00 2.29
61 62 6.804677 ACACATGCAAGAGTTACATTTTTCA 58.195 32.000 0.00 0.00 0.00 2.69
62 63 7.264221 ACACATGCAAGAGTTACATTTTTCAA 58.736 30.769 0.00 0.00 0.00 2.69
63 64 7.927629 ACACATGCAAGAGTTACATTTTTCAAT 59.072 29.630 0.00 0.00 0.00 2.57
64 65 9.409312 CACATGCAAGAGTTACATTTTTCAATA 57.591 29.630 0.00 0.00 0.00 1.90
65 66 9.979578 ACATGCAAGAGTTACATTTTTCAATAA 57.020 25.926 0.00 0.00 0.00 1.40
68 69 9.474920 TGCAAGAGTTACATTTTTCAATAAAGG 57.525 29.630 0.00 0.00 0.00 3.11
69 70 8.925700 GCAAGAGTTACATTTTTCAATAAAGGG 58.074 33.333 0.00 0.00 0.00 3.95
70 71 8.925700 CAAGAGTTACATTTTTCAATAAAGGGC 58.074 33.333 0.00 0.00 0.00 5.19
71 72 8.189119 AGAGTTACATTTTTCAATAAAGGGCA 57.811 30.769 0.00 0.00 0.00 5.36
72 73 8.815912 AGAGTTACATTTTTCAATAAAGGGCAT 58.184 29.630 0.00 0.00 0.00 4.40
73 74 9.435688 GAGTTACATTTTTCAATAAAGGGCATT 57.564 29.630 0.00 0.00 0.00 3.56
74 75 9.791801 AGTTACATTTTTCAATAAAGGGCATTT 57.208 25.926 1.66 1.66 34.72 2.32
76 77 9.784531 TTACATTTTTCAATAAAGGGCATTTCA 57.215 25.926 0.00 0.00 32.01 2.69
77 78 8.866970 ACATTTTTCAATAAAGGGCATTTCAT 57.133 26.923 0.00 0.00 32.01 2.57
78 79 9.299465 ACATTTTTCAATAAAGGGCATTTCATT 57.701 25.926 0.00 0.00 32.01 2.57
79 80 9.562583 CATTTTTCAATAAAGGGCATTTCATTG 57.437 29.630 0.00 9.76 32.01 2.82
80 81 8.915057 TTTTTCAATAAAGGGCATTTCATTGA 57.085 26.923 17.37 17.37 33.69 2.57
81 82 8.915057 TTTTCAATAAAGGGCATTTCATTGAA 57.085 26.923 22.86 22.86 38.04 2.69
82 83 9.517868 TTTTCAATAAAGGGCATTTCATTGAAT 57.482 25.926 24.88 6.38 38.64 2.57
83 84 9.517868 TTTCAATAAAGGGCATTTCATTGAATT 57.482 25.926 24.88 10.59 38.64 2.17
84 85 8.495361 TCAATAAAGGGCATTTCATTGAATTG 57.505 30.769 18.24 14.18 33.20 2.32
85 86 8.319881 TCAATAAAGGGCATTTCATTGAATTGA 58.680 29.630 20.12 15.37 33.20 2.57
86 87 8.609176 CAATAAAGGGCATTTCATTGAATTGAG 58.391 33.333 20.12 5.02 31.03 3.02
87 88 5.750352 AAGGGCATTTCATTGAATTGAGT 57.250 34.783 20.12 5.51 0.00 3.41
88 89 5.750352 AGGGCATTTCATTGAATTGAGTT 57.250 34.783 20.12 6.01 0.00 3.01
89 90 6.855763 AGGGCATTTCATTGAATTGAGTTA 57.144 33.333 20.12 0.00 0.00 2.24
90 91 7.427989 AGGGCATTTCATTGAATTGAGTTAT 57.572 32.000 20.12 0.00 0.00 1.89
91 92 7.495055 AGGGCATTTCATTGAATTGAGTTATC 58.505 34.615 20.12 5.92 0.00 1.75
92 93 7.124599 AGGGCATTTCATTGAATTGAGTTATCA 59.875 33.333 20.12 0.00 0.00 2.15
107 108 6.209361 TGAGTTATCAAGATGATACAGTCGC 58.791 40.000 0.00 0.00 38.92 5.19
108 109 6.149129 AGTTATCAAGATGATACAGTCGCA 57.851 37.500 0.00 0.00 38.92 5.10
109 110 6.753180 AGTTATCAAGATGATACAGTCGCAT 58.247 36.000 0.00 0.00 38.92 4.73
110 111 6.865726 AGTTATCAAGATGATACAGTCGCATC 59.134 38.462 7.25 7.25 38.92 3.91
111 112 4.654091 TCAAGATGATACAGTCGCATCA 57.346 40.909 14.65 3.33 40.57 3.07
112 113 5.009854 TCAAGATGATACAGTCGCATCAA 57.990 39.130 14.65 1.90 40.57 2.57
113 114 5.418676 TCAAGATGATACAGTCGCATCAAA 58.581 37.500 14.65 1.64 40.57 2.69
114 115 5.874261 TCAAGATGATACAGTCGCATCAAAA 59.126 36.000 14.65 1.38 40.57 2.44
115 116 6.371271 TCAAGATGATACAGTCGCATCAAAAA 59.629 34.615 14.65 0.09 40.57 1.94
131 132 2.331265 AAAAACGTCCAGCCTCTGC 58.669 52.632 0.00 0.00 37.95 4.26
132 133 0.465460 AAAAACGTCCAGCCTCTGCA 60.465 50.000 0.00 0.00 41.13 4.41
133 134 0.250901 AAAACGTCCAGCCTCTGCAT 60.251 50.000 0.00 0.00 41.13 3.96
134 135 0.613260 AAACGTCCAGCCTCTGCATA 59.387 50.000 0.00 0.00 41.13 3.14
135 136 0.613260 AACGTCCAGCCTCTGCATAA 59.387 50.000 0.00 0.00 41.13 1.90
136 137 0.833287 ACGTCCAGCCTCTGCATAAT 59.167 50.000 0.00 0.00 41.13 1.28
137 138 1.202580 ACGTCCAGCCTCTGCATAATC 60.203 52.381 0.00 0.00 41.13 1.75
138 139 1.202568 CGTCCAGCCTCTGCATAATCA 60.203 52.381 0.00 0.00 41.13 2.57
139 140 2.492012 GTCCAGCCTCTGCATAATCAG 58.508 52.381 0.00 0.00 41.13 2.90
140 141 2.103771 GTCCAGCCTCTGCATAATCAGA 59.896 50.000 0.00 0.00 40.50 3.27
141 142 2.977580 TCCAGCCTCTGCATAATCAGAT 59.022 45.455 0.00 0.00 41.73 2.90
142 143 3.075148 CCAGCCTCTGCATAATCAGATG 58.925 50.000 0.00 0.00 41.73 2.90
151 152 3.620929 CATAATCAGATGCACACAGCC 57.379 47.619 0.00 0.00 44.83 4.85
152 153 2.785540 TAATCAGATGCACACAGCCA 57.214 45.000 0.00 0.00 44.83 4.75
153 154 1.913778 AATCAGATGCACACAGCCAA 58.086 45.000 0.00 0.00 44.83 4.52
154 155 1.171308 ATCAGATGCACACAGCCAAC 58.829 50.000 0.00 0.00 44.83 3.77
155 156 0.179023 TCAGATGCACACAGCCAACA 60.179 50.000 0.00 0.00 44.83 3.33
156 157 0.669619 CAGATGCACACAGCCAACAA 59.330 50.000 0.00 0.00 44.83 2.83
157 158 1.067364 CAGATGCACACAGCCAACAAA 59.933 47.619 0.00 0.00 44.83 2.83
158 159 1.965643 AGATGCACACAGCCAACAAAT 59.034 42.857 0.00 0.00 44.83 2.32
159 160 2.029649 AGATGCACACAGCCAACAAATC 60.030 45.455 0.00 0.00 44.83 2.17
160 161 0.388659 TGCACACAGCCAACAAATCC 59.611 50.000 0.00 0.00 44.83 3.01
161 162 0.388659 GCACACAGCCAACAAATCCA 59.611 50.000 0.00 0.00 37.23 3.41
162 163 1.001181 GCACACAGCCAACAAATCCAT 59.999 47.619 0.00 0.00 37.23 3.41
163 164 2.679450 CACACAGCCAACAAATCCATG 58.321 47.619 0.00 0.00 0.00 3.66
164 165 1.619827 ACACAGCCAACAAATCCATGG 59.380 47.619 4.97 4.97 37.29 3.66
165 166 1.619827 CACAGCCAACAAATCCATGGT 59.380 47.619 12.58 0.00 36.57 3.55
166 167 1.895131 ACAGCCAACAAATCCATGGTC 59.105 47.619 12.58 0.00 36.57 4.02
167 168 2.173519 CAGCCAACAAATCCATGGTCT 58.826 47.619 12.58 0.00 36.57 3.85
168 169 2.094390 CAGCCAACAAATCCATGGTCTG 60.094 50.000 12.58 10.01 36.57 3.51
169 170 2.170166 GCCAACAAATCCATGGTCTGA 58.830 47.619 12.58 0.00 36.57 3.27
170 171 2.762327 GCCAACAAATCCATGGTCTGAT 59.238 45.455 12.58 0.00 36.57 2.90
171 172 3.953612 GCCAACAAATCCATGGTCTGATA 59.046 43.478 12.58 0.00 36.57 2.15
172 173 4.402155 GCCAACAAATCCATGGTCTGATAA 59.598 41.667 12.58 0.00 36.57 1.75
173 174 5.105392 GCCAACAAATCCATGGTCTGATAAA 60.105 40.000 12.58 0.00 36.57 1.40
174 175 6.574073 GCCAACAAATCCATGGTCTGATAAAA 60.574 38.462 12.58 0.00 36.57 1.52
175 176 6.813152 CCAACAAATCCATGGTCTGATAAAAC 59.187 38.462 12.58 0.00 0.00 2.43
176 177 7.377398 CAACAAATCCATGGTCTGATAAAACA 58.623 34.615 12.58 0.00 0.00 2.83
177 178 7.537596 ACAAATCCATGGTCTGATAAAACAA 57.462 32.000 12.58 0.00 0.00 2.83
178 179 7.378181 ACAAATCCATGGTCTGATAAAACAAC 58.622 34.615 12.58 0.00 0.00 3.32
179 180 7.015098 ACAAATCCATGGTCTGATAAAACAACA 59.985 33.333 12.58 0.00 0.00 3.33
180 181 7.537596 AATCCATGGTCTGATAAAACAACAA 57.462 32.000 12.58 0.00 0.00 2.83
181 182 6.968263 TCCATGGTCTGATAAAACAACAAA 57.032 33.333 12.58 0.00 0.00 2.83
182 183 7.353414 TCCATGGTCTGATAAAACAACAAAA 57.647 32.000 12.58 0.00 0.00 2.44
183 184 7.961351 TCCATGGTCTGATAAAACAACAAAAT 58.039 30.769 12.58 0.00 0.00 1.82
184 185 7.871973 TCCATGGTCTGATAAAACAACAAAATG 59.128 33.333 12.58 0.00 0.00 2.32
185 186 7.871973 CCATGGTCTGATAAAACAACAAAATGA 59.128 33.333 2.57 0.00 0.00 2.57
186 187 9.258826 CATGGTCTGATAAAACAACAAAATGAA 57.741 29.630 0.00 0.00 0.00 2.57
187 188 9.829507 ATGGTCTGATAAAACAACAAAATGAAA 57.170 25.926 0.00 0.00 0.00 2.69
188 189 9.092876 TGGTCTGATAAAACAACAAAATGAAAC 57.907 29.630 0.00 0.00 0.00 2.78
189 190 9.092876 GGTCTGATAAAACAACAAAATGAAACA 57.907 29.630 0.00 0.00 0.00 2.83
193 194 8.816144 TGATAAAACAACAAAATGAAACAGAGC 58.184 29.630 0.00 0.00 0.00 4.09
194 195 8.947055 ATAAAACAACAAAATGAAACAGAGCT 57.053 26.923 0.00 0.00 0.00 4.09
196 197 8.770438 AAAACAACAAAATGAAACAGAGCTAA 57.230 26.923 0.00 0.00 0.00 3.09
197 198 8.770438 AAACAACAAAATGAAACAGAGCTAAA 57.230 26.923 0.00 0.00 0.00 1.85
198 199 8.770438 AACAACAAAATGAAACAGAGCTAAAA 57.230 26.923 0.00 0.00 0.00 1.52
199 200 8.770438 ACAACAAAATGAAACAGAGCTAAAAA 57.230 26.923 0.00 0.00 0.00 1.94
200 201 8.872845 ACAACAAAATGAAACAGAGCTAAAAAG 58.127 29.630 0.00 0.00 0.00 2.27
201 202 9.086336 CAACAAAATGAAACAGAGCTAAAAAGA 57.914 29.630 0.00 0.00 0.00 2.52
202 203 9.651913 AACAAAATGAAACAGAGCTAAAAAGAA 57.348 25.926 0.00 0.00 0.00 2.52
203 204 9.822185 ACAAAATGAAACAGAGCTAAAAAGAAT 57.178 25.926 0.00 0.00 0.00 2.40
213 214 9.466497 ACAGAGCTAAAAAGAATCATAAATCCA 57.534 29.630 0.00 0.00 0.00 3.41
214 215 9.947669 CAGAGCTAAAAAGAATCATAAATCCAG 57.052 33.333 0.00 0.00 0.00 3.86
215 216 8.628280 AGAGCTAAAAAGAATCATAAATCCAGC 58.372 33.333 0.00 0.00 0.00 4.85
216 217 7.720442 AGCTAAAAAGAATCATAAATCCAGCC 58.280 34.615 0.00 0.00 0.00 4.85
217 218 7.562821 AGCTAAAAAGAATCATAAATCCAGCCT 59.437 33.333 0.00 0.00 0.00 4.58
356 359 2.254152 AATCACCTCCAGGCTGTAGA 57.746 50.000 14.43 3.42 39.32 2.59
533 538 6.368791 CCATTAGCTAGCGCACTAATCAATAA 59.631 38.462 20.71 0.00 37.05 1.40
598 603 5.163723 ACGTCTCCAAATCATTGCAGTAATG 60.164 40.000 4.89 4.89 46.09 1.90
599 604 5.163723 CGTCTCCAAATCATTGCAGTAATGT 60.164 40.000 10.66 0.00 45.17 2.71
634 639 2.479566 TCCAACTGACAGAAGCATCC 57.520 50.000 10.08 0.00 0.00 3.51
948 955 5.179533 CACGCTATATCCTCTGCTCTACTA 58.820 45.833 0.00 0.00 0.00 1.82
966 977 3.494332 ACTACTACAGTTGTTCTCCCGT 58.506 45.455 0.00 0.00 31.59 5.28
1005 1016 2.323968 TCGAAATCGCATCCATGGAA 57.676 45.000 20.67 1.57 39.60 3.53
1128 1139 4.394712 CGGAGGAAACAGGCCGCT 62.395 66.667 0.00 0.00 35.59 5.52
1286 1297 1.681486 AAGGCCCGGTGGTTTTTGTG 61.681 55.000 0.00 0.00 0.00 3.33
1454 1467 5.753716 TGGGAAATGTGATGACATGTGATA 58.246 37.500 1.15 0.00 42.30 2.15
1495 1508 4.692625 CAGTACAACTTCTGGTCTTGGATG 59.307 45.833 0.00 0.00 0.00 3.51
1496 1509 3.146104 ACAACTTCTGGTCTTGGATGG 57.854 47.619 0.00 0.00 0.00 3.51
1497 1510 2.711009 ACAACTTCTGGTCTTGGATGGA 59.289 45.455 0.00 0.00 0.00 3.41
1498 1511 3.138283 ACAACTTCTGGTCTTGGATGGAA 59.862 43.478 0.00 0.00 0.00 3.53
1499 1512 4.202609 ACAACTTCTGGTCTTGGATGGAAT 60.203 41.667 0.00 0.00 0.00 3.01
1529 1542 0.899717 TACCGTCAACCGTTAGGCCT 60.900 55.000 11.78 11.78 42.76 5.19
1564 1577 4.159321 TCGCATAAATTTTGCAGGGATTCA 59.841 37.500 18.76 0.00 40.14 2.57
1565 1578 4.505191 CGCATAAATTTTGCAGGGATTCAG 59.495 41.667 18.76 3.26 40.14 3.02
1566 1579 5.663456 GCATAAATTTTGCAGGGATTCAGA 58.337 37.500 15.81 0.00 39.90 3.27
1611 1624 6.745794 AATTCCTTTGAACCCTTTGATTCA 57.254 33.333 0.00 0.00 32.13 2.57
1709 1800 8.408043 AAAGAAATTGGTATCACATGACTCAA 57.592 30.769 0.00 0.00 0.00 3.02
1711 1802 9.685276 AAGAAATTGGTATCACATGACTCAATA 57.315 29.630 0.00 0.00 0.00 1.90
1789 1886 6.968248 ACTCCCATGGTATTCCTATCATATGT 59.032 38.462 11.73 0.00 27.31 2.29
1791 1888 9.163894 CTCCCATGGTATTCCTATCATATGTAT 57.836 37.037 11.73 0.00 27.31 2.29
1830 1927 4.111577 TCTGTTTCATCTCCCCCATTACT 58.888 43.478 0.00 0.00 0.00 2.24
1882 1980 6.319405 ACGCTAAAAACTAAAGAAAACCCTCA 59.681 34.615 0.00 0.00 0.00 3.86
1935 2033 3.295973 GTGAGCCTTAGTCATCCTCTCT 58.704 50.000 0.00 0.00 0.00 3.10
1959 2057 1.153939 CTGCGCTACTGCTCGAAGT 60.154 57.895 9.73 0.00 36.97 3.01
2014 2112 3.519510 TCTGAAGGTGGAGAATCGGAATT 59.480 43.478 0.00 0.00 34.37 2.17
2015 2113 4.714802 TCTGAAGGTGGAGAATCGGAATTA 59.285 41.667 0.00 0.00 34.37 1.40
2051 2149 1.358445 ACCGTCTTCCCTAACTCCTCT 59.642 52.381 0.00 0.00 0.00 3.69
2065 2163 3.644335 ACTCCTCTCCTAAATAAGGCGT 58.356 45.455 0.00 0.00 46.10 5.68
2106 2204 3.380320 ACTCGGGTTTATAGCAATTTGGC 59.620 43.478 0.00 0.00 0.00 4.52
2107 2205 6.329583 AACTCGGGTTTATAGCAATTTGGCT 61.330 40.000 0.00 0.00 39.06 4.75
2130 2228 0.105709 GAGAGAGAGGAAGGAGGGGG 60.106 65.000 0.00 0.00 0.00 5.40
2131 2229 0.858139 AGAGAGAGGAAGGAGGGGGT 60.858 60.000 0.00 0.00 0.00 4.95
2133 2231 1.690985 GAGAGGAAGGAGGGGGTGG 60.691 68.421 0.00 0.00 0.00 4.61
2134 2232 2.182858 GAGAGGAAGGAGGGGGTGGA 62.183 65.000 0.00 0.00 0.00 4.02
2243 2341 3.480470 CTCTGGCTTTGTCCTCTTTGAA 58.520 45.455 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.351456 GCAGGAATTTAGTCTCTTGTAGGAGT 60.351 42.308 0.00 0.00 35.11 3.85
1 2 6.045955 GCAGGAATTTAGTCTCTTGTAGGAG 58.954 44.000 0.00 0.00 34.88 3.69
2 3 5.721960 AGCAGGAATTTAGTCTCTTGTAGGA 59.278 40.000 0.00 0.00 0.00 2.94
3 4 5.983540 AGCAGGAATTTAGTCTCTTGTAGG 58.016 41.667 0.00 0.00 0.00 3.18
4 5 6.981559 GGTAGCAGGAATTTAGTCTCTTGTAG 59.018 42.308 0.00 0.00 0.00 2.74
5 6 6.668283 AGGTAGCAGGAATTTAGTCTCTTGTA 59.332 38.462 0.00 0.00 0.00 2.41
6 7 5.485708 AGGTAGCAGGAATTTAGTCTCTTGT 59.514 40.000 0.00 0.00 0.00 3.16
7 8 5.983540 AGGTAGCAGGAATTTAGTCTCTTG 58.016 41.667 0.00 0.00 0.00 3.02
8 9 5.129650 GGAGGTAGCAGGAATTTAGTCTCTT 59.870 44.000 0.00 0.00 0.00 2.85
9 10 4.651962 GGAGGTAGCAGGAATTTAGTCTCT 59.348 45.833 0.00 0.00 0.00 3.10
10 11 4.651962 AGGAGGTAGCAGGAATTTAGTCTC 59.348 45.833 0.00 0.00 0.00 3.36
11 12 4.407296 CAGGAGGTAGCAGGAATTTAGTCT 59.593 45.833 0.00 0.00 0.00 3.24
12 13 4.698575 CAGGAGGTAGCAGGAATTTAGTC 58.301 47.826 0.00 0.00 0.00 2.59
13 14 3.118223 GCAGGAGGTAGCAGGAATTTAGT 60.118 47.826 0.00 0.00 0.00 2.24
14 15 3.471680 GCAGGAGGTAGCAGGAATTTAG 58.528 50.000 0.00 0.00 0.00 1.85
15 16 2.158957 CGCAGGAGGTAGCAGGAATTTA 60.159 50.000 0.00 0.00 0.00 1.40
16 17 1.407437 CGCAGGAGGTAGCAGGAATTT 60.407 52.381 0.00 0.00 0.00 1.82
17 18 0.179000 CGCAGGAGGTAGCAGGAATT 59.821 55.000 0.00 0.00 0.00 2.17
18 19 0.687757 TCGCAGGAGGTAGCAGGAAT 60.688 55.000 0.00 0.00 0.00 3.01
19 20 1.304962 TCGCAGGAGGTAGCAGGAA 60.305 57.895 0.00 0.00 0.00 3.36
20 21 2.052690 GTCGCAGGAGGTAGCAGGA 61.053 63.158 0.00 0.00 0.00 3.86
21 22 2.351244 TGTCGCAGGAGGTAGCAGG 61.351 63.158 0.00 0.00 0.00 4.85
22 23 1.153745 GTGTCGCAGGAGGTAGCAG 60.154 63.158 0.00 0.00 0.00 4.24
23 24 1.257750 ATGTGTCGCAGGAGGTAGCA 61.258 55.000 0.00 0.00 0.00 3.49
24 25 0.807667 CATGTGTCGCAGGAGGTAGC 60.808 60.000 0.00 0.00 0.00 3.58
25 26 0.807667 GCATGTGTCGCAGGAGGTAG 60.808 60.000 1.49 0.00 0.00 3.18
26 27 1.218047 GCATGTGTCGCAGGAGGTA 59.782 57.895 1.49 0.00 0.00 3.08
27 28 2.046892 GCATGTGTCGCAGGAGGT 60.047 61.111 1.49 0.00 0.00 3.85
28 29 1.642037 CTTGCATGTGTCGCAGGAGG 61.642 60.000 1.49 0.00 41.18 4.30
29 30 0.671472 TCTTGCATGTGTCGCAGGAG 60.671 55.000 1.49 0.00 40.16 3.69
30 31 0.671472 CTCTTGCATGTGTCGCAGGA 60.671 55.000 1.49 0.00 42.45 3.86
31 32 0.952497 ACTCTTGCATGTGTCGCAGG 60.952 55.000 1.77 0.00 41.18 4.85
32 33 0.870393 AACTCTTGCATGTGTCGCAG 59.130 50.000 7.64 0.00 41.18 5.18
33 34 1.798223 GTAACTCTTGCATGTGTCGCA 59.202 47.619 7.64 0.00 37.68 5.10
34 35 1.798223 TGTAACTCTTGCATGTGTCGC 59.202 47.619 7.64 5.16 0.00 5.19
35 36 4.668576 AATGTAACTCTTGCATGTGTCG 57.331 40.909 7.64 0.00 36.09 4.35
36 37 6.917477 TGAAAAATGTAACTCTTGCATGTGTC 59.083 34.615 7.64 0.00 36.09 3.67
37 38 6.804677 TGAAAAATGTAACTCTTGCATGTGT 58.195 32.000 1.77 1.77 36.09 3.72
38 39 7.697352 TTGAAAAATGTAACTCTTGCATGTG 57.303 32.000 0.00 0.00 36.09 3.21
39 40 9.979578 TTATTGAAAAATGTAACTCTTGCATGT 57.020 25.926 0.00 0.00 36.09 3.21
42 43 9.474920 CCTTTATTGAAAAATGTAACTCTTGCA 57.525 29.630 0.00 0.00 0.00 4.08
43 44 8.925700 CCCTTTATTGAAAAATGTAACTCTTGC 58.074 33.333 0.00 0.00 0.00 4.01
44 45 8.925700 GCCCTTTATTGAAAAATGTAACTCTTG 58.074 33.333 0.00 0.00 0.00 3.02
45 46 8.646900 TGCCCTTTATTGAAAAATGTAACTCTT 58.353 29.630 0.00 0.00 0.00 2.85
46 47 8.189119 TGCCCTTTATTGAAAAATGTAACTCT 57.811 30.769 0.00 0.00 0.00 3.24
47 48 9.435688 AATGCCCTTTATTGAAAAATGTAACTC 57.564 29.630 0.00 0.00 0.00 3.01
48 49 9.791801 AAATGCCCTTTATTGAAAAATGTAACT 57.208 25.926 0.00 0.00 0.00 2.24
50 51 9.784531 TGAAATGCCCTTTATTGAAAAATGTAA 57.215 25.926 0.00 0.00 0.00 2.41
51 52 9.956640 ATGAAATGCCCTTTATTGAAAAATGTA 57.043 25.926 0.00 0.00 0.00 2.29
52 53 8.866970 ATGAAATGCCCTTTATTGAAAAATGT 57.133 26.923 0.00 0.00 0.00 2.71
53 54 9.562583 CAATGAAATGCCCTTTATTGAAAAATG 57.437 29.630 6.55 0.00 0.00 2.32
54 55 9.517868 TCAATGAAATGCCCTTTATTGAAAAAT 57.482 25.926 10.70 0.00 31.43 1.82
55 56 8.915057 TCAATGAAATGCCCTTTATTGAAAAA 57.085 26.923 10.70 0.00 31.43 1.94
56 57 8.915057 TTCAATGAAATGCCCTTTATTGAAAA 57.085 26.923 17.91 4.91 36.00 2.29
57 58 9.517868 AATTCAATGAAATGCCCTTTATTGAAA 57.482 25.926 21.30 11.80 38.50 2.69
58 59 8.948145 CAATTCAATGAAATGCCCTTTATTGAA 58.052 29.630 20.43 20.43 38.83 2.69
59 60 8.319881 TCAATTCAATGAAATGCCCTTTATTGA 58.680 29.630 6.18 9.61 31.90 2.57
60 61 8.495361 TCAATTCAATGAAATGCCCTTTATTG 57.505 30.769 6.18 0.14 0.00 1.90
61 62 8.323567 ACTCAATTCAATGAAATGCCCTTTATT 58.676 29.630 6.18 0.00 0.00 1.40
62 63 7.854337 ACTCAATTCAATGAAATGCCCTTTAT 58.146 30.769 6.18 0.00 0.00 1.40
63 64 7.243604 ACTCAATTCAATGAAATGCCCTTTA 57.756 32.000 6.18 0.00 0.00 1.85
64 65 6.117975 ACTCAATTCAATGAAATGCCCTTT 57.882 33.333 6.18 0.00 0.00 3.11
65 66 5.750352 ACTCAATTCAATGAAATGCCCTT 57.250 34.783 6.18 0.00 0.00 3.95
66 67 5.750352 AACTCAATTCAATGAAATGCCCT 57.250 34.783 6.18 0.00 0.00 5.19
67 68 7.267128 TGATAACTCAATTCAATGAAATGCCC 58.733 34.615 6.18 0.00 0.00 5.36
68 69 8.706492 TTGATAACTCAATTCAATGAAATGCC 57.294 30.769 6.18 0.00 36.46 4.40
69 70 9.577110 TCTTGATAACTCAATTCAATGAAATGC 57.423 29.630 6.18 0.00 40.52 3.56
80 81 9.254133 CGACTGTATCATCTTGATAACTCAATT 57.746 33.333 0.00 0.00 40.64 2.32
81 82 7.383572 GCGACTGTATCATCTTGATAACTCAAT 59.616 37.037 0.00 0.00 40.64 2.57
82 83 6.697455 GCGACTGTATCATCTTGATAACTCAA 59.303 38.462 0.00 0.00 40.64 3.02
83 84 6.183360 TGCGACTGTATCATCTTGATAACTCA 60.183 38.462 0.00 0.00 40.64 3.41
84 85 6.209361 TGCGACTGTATCATCTTGATAACTC 58.791 40.000 0.00 0.00 40.64 3.01
85 86 6.149129 TGCGACTGTATCATCTTGATAACT 57.851 37.500 0.00 0.00 40.64 2.24
86 87 6.642540 TGATGCGACTGTATCATCTTGATAAC 59.357 38.462 17.17 0.00 41.50 1.89
87 88 6.748132 TGATGCGACTGTATCATCTTGATAA 58.252 36.000 17.17 0.83 41.50 1.75
88 89 6.331369 TGATGCGACTGTATCATCTTGATA 57.669 37.500 17.17 0.00 41.50 2.15
89 90 5.205759 TGATGCGACTGTATCATCTTGAT 57.794 39.130 17.17 0.00 41.50 2.57
90 91 4.654091 TGATGCGACTGTATCATCTTGA 57.346 40.909 17.17 1.86 41.50 3.02
91 92 5.723492 TTTGATGCGACTGTATCATCTTG 57.277 39.130 17.17 0.00 44.99 3.02
92 93 6.741992 TTTTTGATGCGACTGTATCATCTT 57.258 33.333 17.17 0.00 44.99 2.40
113 114 0.465460 TGCAGAGGCTGGACGTTTTT 60.465 50.000 0.00 0.00 41.91 1.94
114 115 0.250901 ATGCAGAGGCTGGACGTTTT 60.251 50.000 0.00 0.00 41.91 2.43
115 116 0.613260 TATGCAGAGGCTGGACGTTT 59.387 50.000 0.00 0.00 41.91 3.60
116 117 0.613260 TTATGCAGAGGCTGGACGTT 59.387 50.000 0.00 0.00 41.91 3.99
117 118 0.833287 ATTATGCAGAGGCTGGACGT 59.167 50.000 0.00 0.00 41.91 4.34
118 119 1.202568 TGATTATGCAGAGGCTGGACG 60.203 52.381 0.00 0.00 41.91 4.79
119 120 2.103771 TCTGATTATGCAGAGGCTGGAC 59.896 50.000 0.00 0.00 39.84 4.02
120 121 2.401568 TCTGATTATGCAGAGGCTGGA 58.598 47.619 0.00 0.00 39.84 3.86
121 122 2.924757 TCTGATTATGCAGAGGCTGG 57.075 50.000 0.00 0.00 39.84 4.85
131 132 2.946990 TGGCTGTGTGCATCTGATTATG 59.053 45.455 0.00 0.00 45.15 1.90
132 133 3.286329 TGGCTGTGTGCATCTGATTAT 57.714 42.857 0.00 0.00 45.15 1.28
133 134 2.749076 GTTGGCTGTGTGCATCTGATTA 59.251 45.455 0.00 0.00 45.15 1.75
134 135 1.542915 GTTGGCTGTGTGCATCTGATT 59.457 47.619 0.00 0.00 45.15 2.57
135 136 1.171308 GTTGGCTGTGTGCATCTGAT 58.829 50.000 0.00 0.00 45.15 2.90
136 137 0.179023 TGTTGGCTGTGTGCATCTGA 60.179 50.000 0.00 0.00 45.15 3.27
137 138 0.669619 TTGTTGGCTGTGTGCATCTG 59.330 50.000 0.00 0.00 45.15 2.90
138 139 1.401761 TTTGTTGGCTGTGTGCATCT 58.598 45.000 0.00 0.00 45.15 2.90
139 140 2.331194 GATTTGTTGGCTGTGTGCATC 58.669 47.619 0.00 0.00 45.15 3.91
140 141 1.001181 GGATTTGTTGGCTGTGTGCAT 59.999 47.619 0.00 0.00 45.15 3.96
141 142 0.388659 GGATTTGTTGGCTGTGTGCA 59.611 50.000 0.00 0.00 45.15 4.57
142 143 0.388659 TGGATTTGTTGGCTGTGTGC 59.611 50.000 0.00 0.00 41.94 4.57
143 144 2.610976 CCATGGATTTGTTGGCTGTGTG 60.611 50.000 5.56 0.00 0.00 3.82
144 145 1.619827 CCATGGATTTGTTGGCTGTGT 59.380 47.619 5.56 0.00 0.00 3.72
145 146 1.619827 ACCATGGATTTGTTGGCTGTG 59.380 47.619 21.47 0.00 0.00 3.66
146 147 1.895131 GACCATGGATTTGTTGGCTGT 59.105 47.619 21.47 0.00 0.00 4.40
147 148 2.094390 CAGACCATGGATTTGTTGGCTG 60.094 50.000 21.47 0.00 0.00 4.85
148 149 2.173519 CAGACCATGGATTTGTTGGCT 58.826 47.619 21.47 0.00 0.00 4.75
149 150 2.170166 TCAGACCATGGATTTGTTGGC 58.830 47.619 21.47 0.00 0.00 4.52
150 151 6.528537 TTTATCAGACCATGGATTTGTTGG 57.471 37.500 21.47 0.00 0.00 3.77
151 152 7.377398 TGTTTTATCAGACCATGGATTTGTTG 58.623 34.615 21.47 7.11 0.00 3.33
152 153 7.537596 TGTTTTATCAGACCATGGATTTGTT 57.462 32.000 21.47 10.59 0.00 2.83
153 154 7.015098 TGTTGTTTTATCAGACCATGGATTTGT 59.985 33.333 21.47 3.81 0.00 2.83
154 155 7.377398 TGTTGTTTTATCAGACCATGGATTTG 58.623 34.615 21.47 13.21 0.00 2.32
155 156 7.537596 TGTTGTTTTATCAGACCATGGATTT 57.462 32.000 21.47 0.00 0.00 2.17
156 157 7.537596 TTGTTGTTTTATCAGACCATGGATT 57.462 32.000 21.47 2.34 0.00 3.01
157 158 7.537596 TTTGTTGTTTTATCAGACCATGGAT 57.462 32.000 21.47 3.47 0.00 3.41
158 159 6.968263 TTTGTTGTTTTATCAGACCATGGA 57.032 33.333 21.47 0.00 0.00 3.41
159 160 7.871973 TCATTTTGTTGTTTTATCAGACCATGG 59.128 33.333 11.19 11.19 0.00 3.66
160 161 8.815141 TCATTTTGTTGTTTTATCAGACCATG 57.185 30.769 0.00 0.00 0.00 3.66
161 162 9.829507 TTTCATTTTGTTGTTTTATCAGACCAT 57.170 25.926 0.00 0.00 0.00 3.55
162 163 9.092876 GTTTCATTTTGTTGTTTTATCAGACCA 57.907 29.630 0.00 0.00 0.00 4.02
163 164 9.092876 TGTTTCATTTTGTTGTTTTATCAGACC 57.907 29.630 0.00 0.00 0.00 3.85
167 168 8.816144 GCTCTGTTTCATTTTGTTGTTTTATCA 58.184 29.630 0.00 0.00 0.00 2.15
168 169 9.034544 AGCTCTGTTTCATTTTGTTGTTTTATC 57.965 29.630 0.00 0.00 0.00 1.75
169 170 8.947055 AGCTCTGTTTCATTTTGTTGTTTTAT 57.053 26.923 0.00 0.00 0.00 1.40
170 171 9.862371 TTAGCTCTGTTTCATTTTGTTGTTTTA 57.138 25.926 0.00 0.00 0.00 1.52
171 172 8.770438 TTAGCTCTGTTTCATTTTGTTGTTTT 57.230 26.923 0.00 0.00 0.00 2.43
172 173 8.770438 TTTAGCTCTGTTTCATTTTGTTGTTT 57.230 26.923 0.00 0.00 0.00 2.83
173 174 8.770438 TTTTAGCTCTGTTTCATTTTGTTGTT 57.230 26.923 0.00 0.00 0.00 2.83
174 175 8.770438 TTTTTAGCTCTGTTTCATTTTGTTGT 57.230 26.923 0.00 0.00 0.00 3.32
175 176 9.086336 TCTTTTTAGCTCTGTTTCATTTTGTTG 57.914 29.630 0.00 0.00 0.00 3.33
176 177 9.651913 TTCTTTTTAGCTCTGTTTCATTTTGTT 57.348 25.926 0.00 0.00 0.00 2.83
177 178 9.822185 ATTCTTTTTAGCTCTGTTTCATTTTGT 57.178 25.926 0.00 0.00 0.00 2.83
187 188 9.466497 TGGATTTATGATTCTTTTTAGCTCTGT 57.534 29.630 0.00 0.00 0.00 3.41
188 189 9.947669 CTGGATTTATGATTCTTTTTAGCTCTG 57.052 33.333 0.00 0.00 0.00 3.35
189 190 8.628280 GCTGGATTTATGATTCTTTTTAGCTCT 58.372 33.333 0.00 0.00 0.00 4.09
190 191 7.864882 GGCTGGATTTATGATTCTTTTTAGCTC 59.135 37.037 0.00 0.00 0.00 4.09
191 192 7.562821 AGGCTGGATTTATGATTCTTTTTAGCT 59.437 33.333 0.00 0.00 0.00 3.32
192 193 7.720442 AGGCTGGATTTATGATTCTTTTTAGC 58.280 34.615 0.00 0.00 0.00 3.09
356 359 0.815213 ATGCTGTTGCGGCGTATGAT 60.815 50.000 9.37 0.00 43.34 2.45
434 437 0.687427 TCGGATCTGATGCAGGGTCA 60.687 55.000 9.85 0.00 31.51 4.02
438 441 0.749049 TGACTCGGATCTGATGCAGG 59.251 55.000 4.28 3.80 31.51 4.85
612 617 3.760684 GGATGCTTCTGTCAGTTGGAATT 59.239 43.478 0.00 0.00 0.00 2.17
948 955 2.035576 GTCACGGGAGAACAACTGTAGT 59.964 50.000 0.00 0.00 0.00 2.73
966 977 3.554324 CGAAGGAGAAAACGAACTTGTCA 59.446 43.478 0.00 0.00 0.00 3.58
1128 1139 4.720902 CCACCGATGCCACTGCCA 62.721 66.667 0.00 0.00 36.33 4.92
1454 1467 6.717289 TGTACTGGTATAAGCAACCAATTCT 58.283 36.000 0.00 0.00 46.14 2.40
1495 1508 6.403964 GGTTGACGGTAAAGATAACCAATTCC 60.404 42.308 0.00 0.00 37.93 3.01
1496 1509 6.549061 GGTTGACGGTAAAGATAACCAATTC 58.451 40.000 0.00 0.00 37.93 2.17
1497 1510 5.122711 CGGTTGACGGTAAAGATAACCAATT 59.877 40.000 0.00 0.00 37.91 2.32
1498 1511 4.632688 CGGTTGACGGTAAAGATAACCAAT 59.367 41.667 0.00 0.00 37.91 3.16
1499 1512 3.995705 CGGTTGACGGTAAAGATAACCAA 59.004 43.478 0.00 0.00 37.91 3.67
1529 1542 8.061268 GCAAAATTTATGCGAACAAAAGAAGAA 58.939 29.630 8.79 0.00 33.57 2.52
1839 1937 1.303970 TGCAATTCATGTGCGGGGA 60.304 52.632 2.73 0.00 45.27 4.81
1848 1946 7.367285 TCTTTAGTTTTTAGCGTGCAATTCAT 58.633 30.769 0.00 0.00 0.00 2.57
1849 1947 6.730175 TCTTTAGTTTTTAGCGTGCAATTCA 58.270 32.000 0.00 0.00 0.00 2.57
1913 2011 3.027412 GAGAGGATGACTAAGGCTCACA 58.973 50.000 0.00 0.00 0.00 3.58
1935 2033 4.598257 GCAGTAGCGCAGGAAAGA 57.402 55.556 11.47 0.00 0.00 2.52
2014 2112 1.751351 CGGTCAGGAATGCAGAGTCTA 59.249 52.381 0.00 0.00 0.00 2.59
2015 2113 0.534412 CGGTCAGGAATGCAGAGTCT 59.466 55.000 0.00 0.00 0.00 3.24
2051 2149 3.884526 AGTCCTGGACGCCTTATTTAGGA 60.885 47.826 20.49 0.00 46.59 2.94
2065 2163 5.054477 CGAGTTTTAAGTTCAAGTCCTGGA 58.946 41.667 0.00 0.00 0.00 3.86
2106 2204 2.485479 CCTCCTTCCTCTCTCTCTCGAG 60.485 59.091 5.93 5.93 38.67 4.04
2107 2205 1.488812 CCTCCTTCCTCTCTCTCTCGA 59.511 57.143 0.00 0.00 0.00 4.04
2130 2228 2.351924 TTTGCCTCCACAGGGTCCAC 62.352 60.000 0.00 0.00 40.75 4.02
2131 2229 2.067932 CTTTGCCTCCACAGGGTCCA 62.068 60.000 0.00 0.00 40.75 4.02
2133 2231 1.303643 CCTTTGCCTCCACAGGGTC 60.304 63.158 0.00 0.00 40.75 4.46
2134 2232 1.774217 TCCTTTGCCTCCACAGGGT 60.774 57.895 0.00 0.00 39.04 4.34
2138 2236 1.841302 ATCGCTCCTTTGCCTCCACA 61.841 55.000 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.