Multiple sequence alignment - TraesCS1A01G118800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G118800 chr1A 100.000 5975 0 0 1 5975 127755816 127761790 0.000000e+00 11034.0
1 TraesCS1A01G118800 chr1A 96.721 305 5 2 2199 2499 445845165 445845468 2.490000e-138 503.0
2 TraesCS1A01G118800 chr1A 96.552 261 9 0 1725 1985 445844906 445845166 3.310000e-117 433.0
3 TraesCS1A01G118800 chr1A 87.755 49 5 1 2101 2149 27361980 27362027 8.370000e-04 56.5
4 TraesCS1A01G118800 chr1D 93.615 3649 158 41 183 3794 116544731 116548341 0.000000e+00 5378.0
5 TraesCS1A01G118800 chr1D 98.327 1315 19 2 3790 5102 116548453 116549766 0.000000e+00 2303.0
6 TraesCS1A01G118800 chr1D 95.096 469 20 2 5486 5953 116562836 116563302 0.000000e+00 736.0
7 TraesCS1A01G118800 chr1D 88.957 163 12 3 5306 5462 216018055 216017893 4.720000e-46 196.0
8 TraesCS1A01G118800 chr1D 78.981 157 20 9 377 522 465526203 465526049 1.770000e-15 95.3
9 TraesCS1A01G118800 chr1D 100.000 33 0 0 5458 5490 116549876 116549908 1.800000e-05 62.1
10 TraesCS1A01G118800 chr1B 95.901 2293 66 10 2273 4549 178512151 178514431 0.000000e+00 3688.0
11 TraesCS1A01G118800 chr1B 92.756 1408 46 17 916 2284 178510740 178512130 0.000000e+00 1984.0
12 TraesCS1A01G118800 chr1B 94.354 673 22 6 4613 5271 178514425 178515095 0.000000e+00 1018.0
13 TraesCS1A01G118800 chr1B 85.618 744 72 16 181 903 178464375 178465104 0.000000e+00 749.0
14 TraesCS1A01G118800 chr1B 95.668 277 10 1 5458 5734 178515093 178515367 1.530000e-120 444.0
15 TraesCS1A01G118800 chr1B 93.522 247 13 3 5730 5975 178515426 178515670 1.220000e-96 364.0
16 TraesCS1A01G118800 chr1B 90.909 154 10 3 5306 5456 637760614 637760462 2.820000e-48 204.0
17 TraesCS1A01G118800 chr1B 90.323 155 11 3 5303 5456 596163039 596163190 3.650000e-47 200.0
18 TraesCS1A01G118800 chr1B 87.861 173 14 3 5294 5459 676066372 676066200 4.720000e-46 196.0
19 TraesCS1A01G118800 chr1B 77.622 286 49 9 250 521 618388059 618387775 6.200000e-35 159.0
20 TraesCS1A01G118800 chr1B 82.000 100 5 9 314 401 100634772 100634870 8.310000e-09 73.1
21 TraesCS1A01G118800 chr7D 94.005 834 21 4 1694 2499 595752333 595751501 0.000000e+00 1236.0
22 TraesCS1A01G118800 chr7D 97.342 301 7 1 2199 2499 588776001 588776300 1.490000e-140 510.0
23 TraesCS1A01G118800 chr7D 96.169 261 10 0 1725 1985 588775742 588776002 1.540000e-115 427.0
24 TraesCS1A01G118800 chr7D 84.884 86 13 0 371 456 557074548 557074633 2.970000e-13 87.9
25 TraesCS1A01G118800 chr7D 87.755 49 5 1 2101 2149 165657908 165657861 8.370000e-04 56.5
26 TraesCS1A01G118800 chr3D 98.007 301 5 1 2199 2499 220219356 220219057 6.860000e-144 521.0
27 TraesCS1A01G118800 chr3D 95.785 261 11 0 1725 1985 220219615 220219355 7.160000e-114 422.0
28 TraesCS1A01G118800 chr3D 92.857 182 12 1 1 181 94488025 94487844 4.590000e-66 263.0
29 TraesCS1A01G118800 chr3D 91.935 186 13 2 1 184 537946514 537946329 5.940000e-65 259.0
30 TraesCS1A01G118800 chr3D 72.956 477 106 18 3980 4441 79630962 79630494 1.740000e-30 145.0
31 TraesCS1A01G118800 chr6A 97.674 301 6 1 2199 2499 455873097 455872798 3.190000e-142 516.0
32 TraesCS1A01G118800 chr6A 96.552 261 9 0 1725 1985 455873356 455873096 3.310000e-117 433.0
33 TraesCS1A01G118800 chr6A 79.570 186 27 5 248 422 544214604 544214789 8.130000e-24 122.0
34 TraesCS1A01G118800 chr6A 88.542 96 8 1 4507 4599 411770347 411770252 4.890000e-21 113.0
35 TraesCS1A01G118800 chrUn 97.010 301 8 1 2199 2499 70734511 70734810 6.910000e-139 505.0
36 TraesCS1A01G118800 chrUn 96.169 261 10 0 1725 1985 70734252 70734512 1.540000e-115 427.0
37 TraesCS1A01G118800 chrUn 91.358 81 7 0 4502 4582 126680531 126680611 1.760000e-20 111.0
38 TraesCS1A01G118800 chrUn 75.943 212 40 6 250 450 217828069 217827858 1.370000e-16 99.0
39 TraesCS1A01G118800 chrUn 75.943 212 40 6 250 450 227092337 227092126 1.370000e-16 99.0
40 TraesCS1A01G118800 chr5A 95.130 308 7 3 2199 2499 24003002 24002696 4.190000e-131 479.0
41 TraesCS1A01G118800 chr5A 94.656 262 12 2 1725 1985 24003261 24003001 7.210000e-109 405.0
42 TraesCS1A01G118800 chr5A 79.114 158 21 4 374 520 13092130 13091974 1.370000e-16 99.0
43 TraesCS1A01G118800 chr5A 93.478 46 3 0 2104 2149 342240472 342240517 1.070000e-07 69.4
44 TraesCS1A01G118800 chr7A 96.169 261 10 0 1725 1985 694281132 694281392 1.540000e-115 427.0
45 TraesCS1A01G118800 chr5D 92.896 183 11 2 1 183 413033991 413034171 1.280000e-66 265.0
46 TraesCS1A01G118800 chr5D 91.848 184 15 0 1 184 325772298 325772115 2.140000e-64 257.0
47 TraesCS1A01G118800 chr5D 90.625 192 16 1 1 192 232516320 232516509 2.760000e-63 254.0
48 TraesCS1A01G118800 chr5D 89.362 94 6 2 4507 4597 215302077 215301985 1.360000e-21 115.0
49 TraesCS1A01G118800 chr5D 80.000 155 25 4 371 522 217408090 217408241 6.330000e-20 110.0
50 TraesCS1A01G118800 chr5D 80.342 117 11 2 4477 4582 252615896 252615781 1.790000e-10 78.7
51 TraesCS1A01G118800 chr5D 89.796 49 4 1 2101 2149 294637719 294637672 1.800000e-05 62.1
52 TraesCS1A01G118800 chr6D 92.857 182 12 1 1 181 239055768 239055949 4.590000e-66 263.0
53 TraesCS1A01G118800 chr6D 92.308 182 13 1 1 181 334196053 334196234 2.140000e-64 257.0
54 TraesCS1A01G118800 chr6D 92.308 182 12 2 1 181 350940530 350940710 2.140000e-64 257.0
55 TraesCS1A01G118800 chr6D 90.798 163 9 2 5306 5462 68907961 68907799 4.690000e-51 213.0
56 TraesCS1A01G118800 chr6D 87.755 49 5 1 2101 2149 65053140 65053187 8.370000e-04 56.5
57 TraesCS1A01G118800 chr4D 91.892 185 14 1 1 184 96295356 96295172 2.140000e-64 257.0
58 TraesCS1A01G118800 chr4D 78.598 271 36 8 274 522 417812547 417812817 6.200000e-35 159.0
59 TraesCS1A01G118800 chr4B 88.235 170 11 6 5299 5459 28196864 28196695 1.700000e-45 195.0
60 TraesCS1A01G118800 chr3A 87.952 166 13 2 5303 5461 616474153 616474318 7.910000e-44 189.0
61 TraesCS1A01G118800 chr3A 73.849 478 98 21 3980 4441 93895160 93894694 1.330000e-36 165.0
62 TraesCS1A01G118800 chr6B 86.857 175 14 5 5300 5466 188190639 188190812 2.840000e-43 187.0
63 TraesCS1A01G118800 chr6B 87.755 49 5 1 2101 2149 139885253 139885300 8.370000e-04 56.5
64 TraesCS1A01G118800 chr2D 86.705 173 15 4 5300 5464 500764636 500764808 1.020000e-42 185.0
65 TraesCS1A01G118800 chr2D 86.290 124 16 1 4459 4582 484372633 484372755 3.760000e-27 134.0
66 TraesCS1A01G118800 chr2D 75.273 275 43 12 272 522 450369098 450369371 2.280000e-19 108.0
67 TraesCS1A01G118800 chr2D 80.374 107 17 3 4477 4582 28049835 28049732 1.790000e-10 78.7
68 TraesCS1A01G118800 chr3B 73.150 473 109 17 3980 4441 126001513 126001048 2.880000e-33 154.0
69 TraesCS1A01G118800 chr4A 76.842 285 50 11 248 522 710173955 710173677 4.830000e-31 147.0
70 TraesCS1A01G118800 chr4A 93.902 82 5 0 4507 4588 565304188 565304107 2.260000e-24 124.0
71 TraesCS1A01G118800 chr2A 86.290 124 16 1 4459 4582 628670040 628670162 3.760000e-27 134.0
72 TraesCS1A01G118800 chr5B 88.298 94 7 2 4507 4597 230882863 230882771 6.330000e-20 110.0
73 TraesCS1A01G118800 chr7B 81.579 76 9 4 4466 4537 642470024 642469950 2.330000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G118800 chr1A 127755816 127761790 5974 False 11034.000000 11034 100.0000 1 5975 1 chr1A.!!$F2 5974
1 TraesCS1A01G118800 chr1A 445844906 445845468 562 False 468.000000 503 96.6365 1725 2499 2 chr1A.!!$F3 774
2 TraesCS1A01G118800 chr1D 116544731 116549908 5177 False 2581.033333 5378 97.3140 183 5490 3 chr1D.!!$F2 5307
3 TraesCS1A01G118800 chr1B 178510740 178515670 4930 False 1499.600000 3688 94.4402 916 5975 5 chr1B.!!$F4 5059
4 TraesCS1A01G118800 chr1B 178464375 178465104 729 False 749.000000 749 85.6180 181 903 1 chr1B.!!$F2 722
5 TraesCS1A01G118800 chr7D 595751501 595752333 832 True 1236.000000 1236 94.0050 1694 2499 1 chr7D.!!$R2 805
6 TraesCS1A01G118800 chr7D 588775742 588776300 558 False 468.500000 510 96.7555 1725 2499 2 chr7D.!!$F2 774
7 TraesCS1A01G118800 chr3D 220219057 220219615 558 True 471.500000 521 96.8960 1725 2499 2 chr3D.!!$R4 774
8 TraesCS1A01G118800 chr6A 455872798 455873356 558 True 474.500000 516 97.1130 1725 2499 2 chr6A.!!$R2 774
9 TraesCS1A01G118800 chrUn 70734252 70734810 558 False 466.000000 505 96.5895 1725 2499 2 chrUn.!!$F2 774
10 TraesCS1A01G118800 chr5A 24002696 24003261 565 True 442.000000 479 94.8930 1725 2499 2 chr5A.!!$R2 774

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 369 0.042448 GGTTCAACGACGACAACTGC 60.042 55.000 0.00 0.00 0.00 4.40 F
1448 1471 0.036765 TCTTTTGTATGCGGCGGACT 60.037 50.000 9.78 0.00 0.00 3.85 F
1922 1954 0.896019 CCGGGAGATACAGATCGGCT 60.896 60.000 0.00 0.00 37.15 5.52 F
1924 1956 2.160205 CGGGAGATACAGATCGGCTTA 58.840 52.381 0.00 0.00 37.15 3.09 F
3097 3438 1.960417 TGTTGCTTCATCGTCAACCA 58.040 45.000 0.00 0.00 39.30 3.67 F
3224 3565 1.405463 AGATGCTAATCGTGCTCGTCA 59.595 47.619 8.17 1.07 37.92 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 1989 0.166814 GGTGTTCAGCGAAGACATGC 59.833 55.000 16.14 0.00 37.52 4.06 R
3048 3389 2.291089 TGGGCTCTCAATTGCAATCTCA 60.291 45.455 13.38 1.92 0.00 3.27 R
3097 3438 2.359981 TCATTATCCTCCCGACGAGT 57.640 50.000 0.00 0.00 36.82 4.18 R
3120 3461 2.488204 TGTGAGGCAATCGATCCAAA 57.512 45.000 0.00 0.00 0.00 3.28 R
3947 4413 2.129785 GGCATAAGCTTGGGCCCTG 61.130 63.158 25.70 17.09 40.55 4.45 R
5083 5556 2.158871 TCAGTAACCAACAAAGGCTCGT 60.159 45.455 0.00 0.00 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.692908 TTTTCTGCGAAACTCAAAAATAAGG 57.307 32.000 3.71 0.00 0.00 2.69
26 27 6.627395 TTCTGCGAAACTCAAAAATAAGGA 57.373 33.333 0.00 0.00 0.00 3.36
27 28 6.627395 TCTGCGAAACTCAAAAATAAGGAA 57.373 33.333 0.00 0.00 0.00 3.36
28 29 7.033530 TCTGCGAAACTCAAAAATAAGGAAA 57.966 32.000 0.00 0.00 0.00 3.13
29 30 7.484975 TCTGCGAAACTCAAAAATAAGGAAAA 58.515 30.769 0.00 0.00 0.00 2.29
30 31 7.976734 TCTGCGAAACTCAAAAATAAGGAAAAA 59.023 29.630 0.00 0.00 0.00 1.94
47 48 3.525268 AAAAACAGAAACTGGCACTGG 57.475 42.857 7.62 0.00 35.51 4.00
48 49 1.402787 AAACAGAAACTGGCACTGGG 58.597 50.000 7.62 0.00 35.51 4.45
49 50 1.109323 AACAGAAACTGGCACTGGGC 61.109 55.000 7.62 0.00 43.74 5.36
50 51 1.228367 CAGAAACTGGCACTGGGCT 60.228 57.895 0.21 0.00 44.01 5.19
51 52 0.825010 CAGAAACTGGCACTGGGCTT 60.825 55.000 0.21 0.00 44.01 4.35
52 53 0.106015 AGAAACTGGCACTGGGCTTT 60.106 50.000 0.21 0.00 44.01 3.51
53 54 1.144913 AGAAACTGGCACTGGGCTTTA 59.855 47.619 0.21 0.00 44.01 1.85
54 55 1.541588 GAAACTGGCACTGGGCTTTAG 59.458 52.381 0.21 0.73 44.01 1.85
55 56 0.251341 AACTGGCACTGGGCTTTAGG 60.251 55.000 0.21 0.00 44.01 2.69
56 57 1.380302 CTGGCACTGGGCTTTAGGT 59.620 57.895 0.21 0.00 44.01 3.08
57 58 0.678048 CTGGCACTGGGCTTTAGGTC 60.678 60.000 0.21 0.00 44.01 3.85
58 59 1.378762 GGCACTGGGCTTTAGGTCA 59.621 57.895 0.21 0.00 44.01 4.02
59 60 0.251165 GGCACTGGGCTTTAGGTCAA 60.251 55.000 0.21 0.00 44.01 3.18
60 61 1.616994 GGCACTGGGCTTTAGGTCAAT 60.617 52.381 0.21 0.00 44.01 2.57
61 62 2.356741 GGCACTGGGCTTTAGGTCAATA 60.357 50.000 0.21 0.00 44.01 1.90
62 63 2.945668 GCACTGGGCTTTAGGTCAATAG 59.054 50.000 0.00 0.00 40.25 1.73
63 64 3.545703 CACTGGGCTTTAGGTCAATAGG 58.454 50.000 0.00 0.00 0.00 2.57
64 65 3.054361 CACTGGGCTTTAGGTCAATAGGT 60.054 47.826 0.00 0.00 0.00 3.08
65 66 3.591977 ACTGGGCTTTAGGTCAATAGGTT 59.408 43.478 0.00 0.00 0.00 3.50
66 67 4.786454 ACTGGGCTTTAGGTCAATAGGTTA 59.214 41.667 0.00 0.00 0.00 2.85
67 68 5.104485 ACTGGGCTTTAGGTCAATAGGTTAG 60.104 44.000 0.00 0.00 0.00 2.34
68 69 4.786454 TGGGCTTTAGGTCAATAGGTTAGT 59.214 41.667 0.00 0.00 0.00 2.24
69 70 5.104652 TGGGCTTTAGGTCAATAGGTTAGTC 60.105 44.000 0.00 0.00 0.00 2.59
70 71 5.366460 GGCTTTAGGTCAATAGGTTAGTCC 58.634 45.833 0.00 0.00 0.00 3.85
71 72 5.366460 GCTTTAGGTCAATAGGTTAGTCCC 58.634 45.833 0.00 0.00 36.75 4.46
72 73 5.104652 GCTTTAGGTCAATAGGTTAGTCCCA 60.105 44.000 0.00 0.00 36.75 4.37
73 74 6.577638 GCTTTAGGTCAATAGGTTAGTCCCAA 60.578 42.308 0.00 0.00 36.75 4.12
74 75 6.956102 TTAGGTCAATAGGTTAGTCCCAAA 57.044 37.500 0.00 0.00 36.75 3.28
75 76 5.853572 AGGTCAATAGGTTAGTCCCAAAA 57.146 39.130 0.00 0.00 36.75 2.44
76 77 6.208840 AGGTCAATAGGTTAGTCCCAAAAA 57.791 37.500 0.00 0.00 36.75 1.94
77 78 6.800890 AGGTCAATAGGTTAGTCCCAAAAAT 58.199 36.000 0.00 0.00 36.75 1.82
78 79 6.890268 AGGTCAATAGGTTAGTCCCAAAAATC 59.110 38.462 0.00 0.00 36.75 2.17
79 80 6.661805 GGTCAATAGGTTAGTCCCAAAAATCA 59.338 38.462 0.00 0.00 36.75 2.57
80 81 7.342026 GGTCAATAGGTTAGTCCCAAAAATCAT 59.658 37.037 0.00 0.00 36.75 2.45
81 82 9.403583 GTCAATAGGTTAGTCCCAAAAATCATA 57.596 33.333 0.00 0.00 36.75 2.15
134 135 9.723447 ACATTCGAGATAGATAATACAATAGCG 57.277 33.333 0.00 0.00 0.00 4.26
135 136 9.723447 CATTCGAGATAGATAATACAATAGCGT 57.277 33.333 0.00 0.00 0.00 5.07
136 137 9.723447 ATTCGAGATAGATAATACAATAGCGTG 57.277 33.333 0.00 0.00 0.00 5.34
137 138 7.694886 TCGAGATAGATAATACAATAGCGTGG 58.305 38.462 0.00 0.00 0.00 4.94
138 139 7.551617 TCGAGATAGATAATACAATAGCGTGGA 59.448 37.037 0.00 0.00 0.00 4.02
139 140 8.182227 CGAGATAGATAATACAATAGCGTGGAA 58.818 37.037 0.00 0.00 0.00 3.53
140 141 9.291664 GAGATAGATAATACAATAGCGTGGAAC 57.708 37.037 0.00 0.00 0.00 3.62
141 142 8.803235 AGATAGATAATACAATAGCGTGGAACA 58.197 33.333 0.00 0.00 35.74 3.18
142 143 9.419297 GATAGATAATACAATAGCGTGGAACAA 57.581 33.333 0.00 0.00 44.16 2.83
143 144 9.944376 ATAGATAATACAATAGCGTGGAACAAT 57.056 29.630 0.00 0.00 44.16 2.71
144 145 8.677148 AGATAATACAATAGCGTGGAACAATT 57.323 30.769 0.00 0.00 44.16 2.32
145 146 9.772973 AGATAATACAATAGCGTGGAACAATTA 57.227 29.630 0.00 0.00 44.16 1.40
149 150 9.915629 AATACAATAGCGTGGAACAATTAAAAA 57.084 25.926 0.00 0.00 44.16 1.94
151 152 8.825667 ACAATAGCGTGGAACAATTAAAAATT 57.174 26.923 0.00 0.00 44.16 1.82
152 153 9.915629 ACAATAGCGTGGAACAATTAAAAATTA 57.084 25.926 0.00 0.00 44.16 1.40
177 178 3.982213 CGTTGGAGACGTATCACGA 57.018 52.632 15.49 1.55 46.05 4.35
178 179 2.470196 CGTTGGAGACGTATCACGAT 57.530 50.000 15.49 0.00 46.05 3.73
179 180 2.373269 CGTTGGAGACGTATCACGATC 58.627 52.381 15.49 3.33 46.05 3.69
194 195 1.225426 GATCCTCAGGTGCATGGCA 59.775 57.895 0.00 0.00 35.60 4.92
210 211 2.503331 TGGCATCGCTTCTTCTTTGAA 58.497 42.857 0.00 0.00 0.00 2.69
228 229 8.690203 TCTTTGAATTTGTATTCCAGACTTCA 57.310 30.769 0.00 0.00 39.56 3.02
238 239 5.768980 ATTCCAGACTTCAATTCTCCTCA 57.231 39.130 0.00 0.00 0.00 3.86
244 245 6.936900 CCAGACTTCAATTCTCCTCAAGTTTA 59.063 38.462 0.00 0.00 0.00 2.01
246 247 8.840321 CAGACTTCAATTCTCCTCAAGTTTAAA 58.160 33.333 0.00 0.00 0.00 1.52
280 281 5.125097 GTGTAGATTCCTACCGTCTTCTTGA 59.875 44.000 0.00 0.00 43.56 3.02
284 285 9.278103 GTAGATTCCTACCGTCTTCTTGAGACC 62.278 48.148 0.97 0.00 42.08 3.85
309 311 4.811024 TGACGTTAGGATTTCTCATCATGC 59.189 41.667 0.00 0.00 0.00 4.06
366 369 0.042448 GGTTCAACGACGACAACTGC 60.042 55.000 0.00 0.00 0.00 4.40
380 383 1.272490 CAACTGCGAGTGGTCCTTAGA 59.728 52.381 0.00 0.00 0.00 2.10
402 405 1.209128 CACGTGCACGAAGACTTCTT 58.791 50.000 42.94 16.79 43.02 2.52
440 443 3.890936 AAGTCGGCTCCAGCAGTGC 62.891 63.158 7.13 7.13 44.36 4.40
492 495 2.244695 AGTGGTCGTTATGTGGTCTCA 58.755 47.619 0.00 0.00 0.00 3.27
595 608 7.681903 TCGTTTCACTAAAGAACAAGAAAGAC 58.318 34.615 0.00 0.00 0.00 3.01
612 625 3.567478 AGACCAACCTAATCCTGCATC 57.433 47.619 0.00 0.00 0.00 3.91
630 643 6.425114 CCTGCATCTCACAGTACATTATTACC 59.575 42.308 0.00 0.00 33.09 2.85
646 659 1.191535 TACCCACTCTCCCGTTGATG 58.808 55.000 0.00 0.00 0.00 3.07
670 690 1.764723 TCATCGATCCAACTGCCATCT 59.235 47.619 0.00 0.00 0.00 2.90
716 736 1.602377 CCTCCGTTTGAAACCACTCAC 59.398 52.381 2.00 0.00 0.00 3.51
722 742 3.058914 CGTTTGAAACCACTCACCATCTC 60.059 47.826 2.00 0.00 0.00 2.75
728 748 1.544825 CCACTCACCATCTCCCACGT 61.545 60.000 0.00 0.00 0.00 4.49
756 776 1.829533 CCCATCCCAGCAATTCCGG 60.830 63.158 0.00 0.00 0.00 5.14
763 783 1.135315 CAGCAATTCCGGTGAAGCG 59.865 57.895 0.00 0.00 36.48 4.68
823 843 0.946221 GATCCCTAACGCGCATCCAG 60.946 60.000 5.73 0.00 0.00 3.86
841 861 2.746803 GCCAACGGCCACGATGTAC 61.747 63.158 2.24 0.00 44.06 2.90
849 869 1.413767 GCCACGATGTACACAGCTCG 61.414 60.000 13.56 13.56 35.28 5.03
937 959 7.127917 AGAAACAAAATCACCACAACAAAAC 57.872 32.000 0.00 0.00 0.00 2.43
1024 1047 0.553862 AGGAGGAGGAGGACTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
1094 1117 3.097162 ATCTTCCCCTTCCCCGCC 61.097 66.667 0.00 0.00 0.00 6.13
1244 1267 2.819984 GATGGTCGCTTGGGAGCCAA 62.820 60.000 12.93 0.00 46.42 4.52
1294 1317 4.515404 GCGTCTGGCGTTATTCCT 57.485 55.556 2.76 0.00 43.66 3.36
1422 1445 2.482721 GGTATGTGGTGTTTCTGGTTCG 59.517 50.000 0.00 0.00 0.00 3.95
1448 1471 0.036765 TCTTTTGTATGCGGCGGACT 60.037 50.000 9.78 0.00 0.00 3.85
1502 1527 5.528600 TGGAGAAAATGTGAGGGGAAATA 57.471 39.130 0.00 0.00 0.00 1.40
1506 1531 2.348411 AATGTGAGGGGAAATAGGCG 57.652 50.000 0.00 0.00 0.00 5.52
1511 1536 3.288092 GTGAGGGGAAATAGGCGAAAAT 58.712 45.455 0.00 0.00 0.00 1.82
1543 1568 6.151144 AGTGTTTGATTAAGGCTGTATGGAAC 59.849 38.462 0.00 0.00 0.00 3.62
1664 1689 2.110967 CGCCAGAAGATGCCACAGG 61.111 63.158 0.00 0.00 0.00 4.00
1922 1954 0.896019 CCGGGAGATACAGATCGGCT 60.896 60.000 0.00 0.00 37.15 5.52
1924 1956 2.160205 CGGGAGATACAGATCGGCTTA 58.840 52.381 0.00 0.00 37.15 3.09
2108 2388 9.003658 CACAAGTACCATCTCTGTTTCTAAATT 57.996 33.333 0.00 0.00 0.00 1.82
2493 2834 8.103948 TCTGAAAATCTTTCAGAGAAACATCC 57.896 34.615 22.01 0.00 46.95 3.51
2607 2948 8.044908 AGTATTGTTTTCCTCGTATTATGGTGT 58.955 33.333 0.00 0.00 0.00 4.16
2885 3226 7.716998 TCAAGTCCATTTTCCTATAGAGATTGC 59.283 37.037 0.00 0.00 0.00 3.56
3048 3389 5.359009 CCACATGGAAAATACTGCTCATCTT 59.641 40.000 0.00 0.00 37.39 2.40
3097 3438 1.960417 TGTTGCTTCATCGTCAACCA 58.040 45.000 0.00 0.00 39.30 3.67
3120 3461 1.618837 CGTCGGGAGGATAATGATGGT 59.381 52.381 0.00 0.00 0.00 3.55
3224 3565 1.405463 AGATGCTAATCGTGCTCGTCA 59.595 47.619 8.17 1.07 37.92 4.35
3702 4044 5.240623 AGACATGTGGAGAAATTGCGTTAAA 59.759 36.000 1.15 0.00 0.00 1.52
3947 4413 1.001633 TGCACCCGGACTCTTTCTTAC 59.998 52.381 0.73 0.00 0.00 2.34
4128 4594 9.065871 GTATCTTTGCAACTCATTTATGTGTTC 57.934 33.333 0.00 4.61 41.07 3.18
4220 4686 0.730494 GCCTTTCATTCTGTGCGCAC 60.730 55.000 33.11 33.11 0.00 5.34
5007 5480 3.528532 CCCCTTATATTATCGAACCGGC 58.471 50.000 0.00 0.00 0.00 6.13
5013 5486 4.866508 ATATTATCGAACCGGCTCTTCA 57.133 40.909 0.00 0.00 0.00 3.02
5015 5488 0.099968 TATCGAACCGGCTCTTCACG 59.900 55.000 0.00 0.00 0.00 4.35
5025 5498 2.796383 CGGCTCTTCACGGTCTGATTAG 60.796 54.545 0.00 0.00 0.00 1.73
5081 5554 3.992943 TTCAGGTTACCGGACATGAAT 57.007 42.857 16.64 0.00 43.05 2.57
5082 5555 3.992943 TCAGGTTACCGGACATGAATT 57.007 42.857 9.46 0.00 37.39 2.17
5083 5556 5.423704 TTCAGGTTACCGGACATGAATTA 57.576 39.130 16.64 0.00 43.05 1.40
5119 5607 1.228063 CTGATGGCAATCCTCCCGG 60.228 63.158 0.00 0.00 31.15 5.73
5168 5656 8.503196 GGTTAATAGCCATTTGTTTTTCCTTTG 58.497 33.333 0.00 0.00 0.00 2.77
5242 5730 5.597813 AACTTTGACTCTTGCAGATTACG 57.402 39.130 0.00 0.00 0.00 3.18
5246 5734 6.704493 ACTTTGACTCTTGCAGATTACGTTAA 59.296 34.615 0.00 0.00 0.00 2.01
5267 5755 9.773670 CGTTAATGTACTATTTATGTTGCTACG 57.226 33.333 0.00 0.00 0.00 3.51
5272 5760 9.674824 ATGTACTATTTATGTTGCTACGTACTC 57.325 33.333 0.00 0.00 0.00 2.59
5274 5762 7.344095 ACTATTTATGTTGCTACGTACTCCT 57.656 36.000 0.00 0.00 0.00 3.69
5275 5763 7.779073 ACTATTTATGTTGCTACGTACTCCTT 58.221 34.615 0.00 0.00 0.00 3.36
5276 5764 6.903883 ATTTATGTTGCTACGTACTCCTTG 57.096 37.500 0.00 0.00 0.00 3.61
5277 5765 2.074547 TGTTGCTACGTACTCCTTGC 57.925 50.000 0.00 0.00 0.00 4.01
5278 5766 1.341852 TGTTGCTACGTACTCCTTGCA 59.658 47.619 1.22 1.22 0.00 4.08
5279 5767 1.993370 GTTGCTACGTACTCCTTGCAG 59.007 52.381 5.28 0.00 0.00 4.41
5280 5768 1.541379 TGCTACGTACTCCTTGCAGA 58.459 50.000 1.22 0.00 0.00 4.26
5281 5769 1.890489 TGCTACGTACTCCTTGCAGAA 59.110 47.619 1.22 0.00 0.00 3.02
5282 5770 2.297880 TGCTACGTACTCCTTGCAGAAA 59.702 45.455 1.22 0.00 0.00 2.52
5283 5771 2.924290 GCTACGTACTCCTTGCAGAAAG 59.076 50.000 0.00 0.00 35.47 2.62
5285 5773 3.746045 ACGTACTCCTTGCAGAAAGAA 57.254 42.857 0.00 0.00 38.24 2.52
5286 5774 4.067972 ACGTACTCCTTGCAGAAAGAAA 57.932 40.909 0.00 0.00 38.24 2.52
5287 5775 3.808174 ACGTACTCCTTGCAGAAAGAAAC 59.192 43.478 0.00 0.00 38.24 2.78
5288 5776 3.186613 CGTACTCCTTGCAGAAAGAAACC 59.813 47.826 0.00 0.00 38.24 3.27
5289 5777 3.297134 ACTCCTTGCAGAAAGAAACCA 57.703 42.857 0.00 0.00 38.24 3.67
5290 5778 3.837355 ACTCCTTGCAGAAAGAAACCAT 58.163 40.909 0.00 0.00 38.24 3.55
5291 5779 4.985538 ACTCCTTGCAGAAAGAAACCATA 58.014 39.130 0.00 0.00 38.24 2.74
5292 5780 5.385198 ACTCCTTGCAGAAAGAAACCATAA 58.615 37.500 0.00 0.00 38.24 1.90
5293 5781 5.833131 ACTCCTTGCAGAAAGAAACCATAAA 59.167 36.000 0.00 0.00 38.24 1.40
5294 5782 6.494835 ACTCCTTGCAGAAAGAAACCATAAAT 59.505 34.615 0.00 0.00 38.24 1.40
5300 5788 9.995003 TTGCAGAAAGAAACCATAAATTACATT 57.005 25.926 0.00 0.00 0.00 2.71
5302 5790 9.423061 GCAGAAAGAAACCATAAATTACATTGT 57.577 29.630 0.00 0.00 0.00 2.71
5308 5796 9.185680 AGAAACCATAAATTACATTGTAGTCCC 57.814 33.333 0.00 0.00 0.00 4.46
5309 5797 9.185680 GAAACCATAAATTACATTGTAGTCCCT 57.814 33.333 0.00 0.00 0.00 4.20
5310 5798 8.747538 AACCATAAATTACATTGTAGTCCCTC 57.252 34.615 0.00 0.00 0.00 4.30
5311 5799 8.102484 ACCATAAATTACATTGTAGTCCCTCT 57.898 34.615 0.00 0.00 0.00 3.69
5312 5800 7.993183 ACCATAAATTACATTGTAGTCCCTCTG 59.007 37.037 0.00 0.00 0.00 3.35
5313 5801 7.993183 CCATAAATTACATTGTAGTCCCTCTGT 59.007 37.037 0.00 0.00 0.00 3.41
5314 5802 9.396022 CATAAATTACATTGTAGTCCCTCTGTT 57.604 33.333 0.00 0.00 0.00 3.16
5315 5803 9.975218 ATAAATTACATTGTAGTCCCTCTGTTT 57.025 29.630 0.00 0.00 0.00 2.83
5316 5804 7.923414 AATTACATTGTAGTCCCTCTGTTTC 57.077 36.000 0.00 0.00 0.00 2.78
5317 5805 6.681729 TTACATTGTAGTCCCTCTGTTTCT 57.318 37.500 0.00 0.00 0.00 2.52
5318 5806 7.786046 TTACATTGTAGTCCCTCTGTTTCTA 57.214 36.000 0.00 0.00 0.00 2.10
5319 5807 6.681729 ACATTGTAGTCCCTCTGTTTCTAA 57.318 37.500 0.00 0.00 0.00 2.10
5320 5808 7.074653 ACATTGTAGTCCCTCTGTTTCTAAA 57.925 36.000 0.00 0.00 0.00 1.85
5321 5809 7.690256 ACATTGTAGTCCCTCTGTTTCTAAAT 58.310 34.615 0.00 0.00 0.00 1.40
5322 5810 8.822805 ACATTGTAGTCCCTCTGTTTCTAAATA 58.177 33.333 0.00 0.00 0.00 1.40
5323 5811 9.838339 CATTGTAGTCCCTCTGTTTCTAAATAT 57.162 33.333 0.00 0.00 0.00 1.28
5326 5814 9.667107 TGTAGTCCCTCTGTTTCTAAATATTTG 57.333 33.333 11.05 1.65 0.00 2.32
5327 5815 9.668497 GTAGTCCCTCTGTTTCTAAATATTTGT 57.332 33.333 11.05 0.00 0.00 2.83
5328 5816 8.794335 AGTCCCTCTGTTTCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
5329 5817 8.606830 AGTCCCTCTGTTTCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
5330 5818 9.232473 GTCCCTCTGTTTCTAAATATTTGTCTT 57.768 33.333 11.05 0.00 0.00 3.01
5331 5819 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
5349 5837 9.573166 TTTGTCTTTCTAGAGATTTCAAATGGA 57.427 29.630 0.00 0.00 0.00 3.41
5350 5838 9.745018 TTGTCTTTCTAGAGATTTCAAATGGAT 57.255 29.630 0.00 0.00 0.00 3.41
5351 5839 9.745018 TGTCTTTCTAGAGATTTCAAATGGATT 57.255 29.630 0.00 0.00 0.00 3.01
5402 5890 7.681939 TTTTAGATCACTTATTTTGCTCCGT 57.318 32.000 0.00 0.00 0.00 4.69
5403 5891 8.780846 TTTTAGATCACTTATTTTGCTCCGTA 57.219 30.769 0.00 0.00 0.00 4.02
5404 5892 7.766219 TTAGATCACTTATTTTGCTCCGTAC 57.234 36.000 0.00 0.00 0.00 3.67
5405 5893 4.804139 AGATCACTTATTTTGCTCCGTACG 59.196 41.667 8.69 8.69 0.00 3.67
5406 5894 3.916761 TCACTTATTTTGCTCCGTACGT 58.083 40.909 15.21 0.00 0.00 3.57
5407 5895 5.058149 TCACTTATTTTGCTCCGTACGTA 57.942 39.130 15.21 0.00 0.00 3.57
5408 5896 5.097529 TCACTTATTTTGCTCCGTACGTAG 58.902 41.667 15.21 9.26 0.00 3.51
5410 5898 5.004156 CACTTATTTTGCTCCGTACGTAGTC 59.996 44.000 15.21 5.03 43.93 2.59
5411 5899 3.581024 ATTTTGCTCCGTACGTAGTCA 57.419 42.857 15.21 7.62 43.93 3.41
5412 5900 2.336554 TTTGCTCCGTACGTAGTCAC 57.663 50.000 15.21 0.00 43.93 3.67
5413 5901 1.527034 TTGCTCCGTACGTAGTCACT 58.473 50.000 15.21 0.00 43.93 3.41
5414 5902 1.527034 TGCTCCGTACGTAGTCACTT 58.473 50.000 15.21 0.00 43.93 3.16
5415 5903 1.198408 TGCTCCGTACGTAGTCACTTG 59.802 52.381 15.21 0.00 43.93 3.16
5416 5904 1.198637 GCTCCGTACGTAGTCACTTGT 59.801 52.381 15.21 0.00 43.93 3.16
5417 5905 2.351157 GCTCCGTACGTAGTCACTTGTT 60.351 50.000 15.21 0.00 43.93 2.83
5418 5906 3.231965 CTCCGTACGTAGTCACTTGTTG 58.768 50.000 15.21 0.00 43.93 3.33
5419 5907 2.877786 TCCGTACGTAGTCACTTGTTGA 59.122 45.455 15.21 0.00 43.93 3.18
5420 5908 3.314913 TCCGTACGTAGTCACTTGTTGAA 59.685 43.478 15.21 0.00 43.93 2.69
5421 5909 4.043750 CCGTACGTAGTCACTTGTTGAAA 58.956 43.478 15.21 0.00 43.93 2.69
5422 5910 4.682860 CCGTACGTAGTCACTTGTTGAAAT 59.317 41.667 15.21 0.00 43.93 2.17
5423 5911 5.858049 CCGTACGTAGTCACTTGTTGAAATA 59.142 40.000 15.21 0.00 43.93 1.40
5424 5912 6.529125 CCGTACGTAGTCACTTGTTGAAATAT 59.471 38.462 15.21 0.00 43.93 1.28
5425 5913 7.253552 CCGTACGTAGTCACTTGTTGAAATATC 60.254 40.741 15.21 0.00 43.93 1.63
5426 5914 7.484007 CGTACGTAGTCACTTGTTGAAATATCT 59.516 37.037 7.22 0.00 43.93 1.98
5427 5915 9.778993 GTACGTAGTCACTTGTTGAAATATCTA 57.221 33.333 0.00 0.00 43.93 1.98
5428 5916 8.912787 ACGTAGTCACTTGTTGAAATATCTAG 57.087 34.615 0.00 0.00 29.74 2.43
5429 5917 8.737175 ACGTAGTCACTTGTTGAAATATCTAGA 58.263 33.333 0.00 0.00 29.74 2.43
5430 5918 9.569167 CGTAGTCACTTGTTGAAATATCTAGAA 57.431 33.333 0.00 0.00 35.39 2.10
5435 5923 9.996554 TCACTTGTTGAAATATCTAGAAAGACA 57.003 29.630 0.00 0.00 33.57 3.41
5453 5941 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
5454 5942 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
5455 5943 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
5456 5944 6.822170 AGACAAATATTTAGAAACGGAGGGAC 59.178 38.462 0.00 0.00 0.00 4.46
5491 5979 2.676748 TGGTTTTTGCAAGGAGATGGT 58.323 42.857 0.00 0.00 0.00 3.55
5494 5982 4.837860 TGGTTTTTGCAAGGAGATGGTAAT 59.162 37.500 0.00 0.00 0.00 1.89
5516 6004 1.202842 TGATCGATGGCTGCAATCCAT 60.203 47.619 17.32 17.32 46.35 3.41
5579 6067 1.416401 GGCCGATCATTCCCTGAACTA 59.584 52.381 0.00 0.00 37.44 2.24
5580 6068 2.039084 GGCCGATCATTCCCTGAACTAT 59.961 50.000 0.00 0.00 37.44 2.12
5581 6069 3.496870 GGCCGATCATTCCCTGAACTATT 60.497 47.826 0.00 0.00 37.44 1.73
5664 6152 0.324614 CATGCAGTACCCAGACCACA 59.675 55.000 0.00 0.00 0.00 4.17
5698 6186 5.988561 GTGGCCATCTTTCTAGAGAAGTATG 59.011 44.000 9.72 12.50 35.21 2.39
5765 6314 7.200455 TGCTGATGAAAAGAATGCATTATGAG 58.800 34.615 12.97 5.86 0.00 2.90
5782 6332 8.125448 GCATTATGAGTTAGAACAATCCTTGAC 58.875 37.037 0.00 0.00 0.00 3.18
5786 6336 6.285224 TGAGTTAGAACAATCCTTGACGAAA 58.715 36.000 0.00 0.00 0.00 3.46
5790 6340 8.076178 AGTTAGAACAATCCTTGACGAAAATTG 58.924 33.333 0.00 0.00 34.34 2.32
5800 6350 3.644823 TGACGAAAATTGTACGAGCTCA 58.355 40.909 15.40 0.00 0.00 4.26
5883 6433 7.504238 TCATTCAAGGGTACAAGTGTGTAAATT 59.496 33.333 0.00 0.00 41.89 1.82
5907 6457 5.221722 TGCTAAATATCATGACAGAGTCCCC 60.222 44.000 0.00 0.00 0.00 4.81
5921 6471 0.240945 GTCCCCAAATGACAAGTGCG 59.759 55.000 0.00 0.00 32.91 5.34
5926 6476 0.667993 CAAATGACAAGTGCGTGGGT 59.332 50.000 0.00 0.00 0.00 4.51
5949 6499 2.345760 GCCTGCAATGGTGGGAGTG 61.346 63.158 0.00 0.00 0.00 3.51
5957 6507 1.838073 ATGGTGGGAGTGGACCGTTC 61.838 60.000 0.00 0.00 34.69 3.95
5960 6510 1.152419 TGGGAGTGGACCGTTCAGA 60.152 57.895 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.647715 TCCTTATTTTTGAGTTTCGCAGAAAAG 59.352 33.333 5.51 0.00 45.90 2.27
1 2 7.484975 TCCTTATTTTTGAGTTTCGCAGAAAA 58.515 30.769 5.51 0.00 45.90 2.29
2 3 7.033530 TCCTTATTTTTGAGTTTCGCAGAAA 57.966 32.000 0.55 0.55 45.90 2.52
3 4 6.627395 TCCTTATTTTTGAGTTTCGCAGAA 57.373 33.333 0.00 0.00 45.90 3.02
4 5 6.627395 TTCCTTATTTTTGAGTTTCGCAGA 57.373 33.333 0.00 0.00 0.00 4.26
5 6 7.692908 TTTTCCTTATTTTTGAGTTTCGCAG 57.307 32.000 0.00 0.00 0.00 5.18
27 28 2.168313 CCCAGTGCCAGTTTCTGTTTTT 59.832 45.455 0.00 0.00 0.00 1.94
28 29 1.756538 CCCAGTGCCAGTTTCTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
29 30 1.402787 CCCAGTGCCAGTTTCTGTTT 58.597 50.000 0.00 0.00 0.00 2.83
30 31 1.109323 GCCCAGTGCCAGTTTCTGTT 61.109 55.000 0.00 0.00 0.00 3.16
31 32 1.529244 GCCCAGTGCCAGTTTCTGT 60.529 57.895 0.00 0.00 0.00 3.41
32 33 0.825010 AAGCCCAGTGCCAGTTTCTG 60.825 55.000 0.00 0.00 42.71 3.02
33 34 0.106015 AAAGCCCAGTGCCAGTTTCT 60.106 50.000 0.00 0.00 42.71 2.52
34 35 1.541588 CTAAAGCCCAGTGCCAGTTTC 59.458 52.381 0.00 0.00 42.71 2.78
35 36 1.620822 CTAAAGCCCAGTGCCAGTTT 58.379 50.000 0.00 0.00 42.71 2.66
36 37 0.251341 CCTAAAGCCCAGTGCCAGTT 60.251 55.000 0.00 0.00 42.71 3.16
37 38 1.380302 CCTAAAGCCCAGTGCCAGT 59.620 57.895 0.00 0.00 42.71 4.00
38 39 0.678048 GACCTAAAGCCCAGTGCCAG 60.678 60.000 0.00 0.00 42.71 4.85
39 40 1.378762 GACCTAAAGCCCAGTGCCA 59.621 57.895 0.00 0.00 42.71 4.92
40 41 0.251165 TTGACCTAAAGCCCAGTGCC 60.251 55.000 0.00 0.00 42.71 5.01
41 42 1.839424 ATTGACCTAAAGCCCAGTGC 58.161 50.000 0.00 0.00 41.71 4.40
42 43 3.054361 ACCTATTGACCTAAAGCCCAGTG 60.054 47.826 0.00 0.00 0.00 3.66
43 44 3.190439 ACCTATTGACCTAAAGCCCAGT 58.810 45.455 0.00 0.00 0.00 4.00
44 45 3.933861 ACCTATTGACCTAAAGCCCAG 57.066 47.619 0.00 0.00 0.00 4.45
45 46 4.786454 ACTAACCTATTGACCTAAAGCCCA 59.214 41.667 0.00 0.00 0.00 5.36
46 47 5.366460 GACTAACCTATTGACCTAAAGCCC 58.634 45.833 0.00 0.00 0.00 5.19
47 48 5.366460 GGACTAACCTATTGACCTAAAGCC 58.634 45.833 0.00 0.00 35.41 4.35
48 49 5.104652 TGGGACTAACCTATTGACCTAAAGC 60.105 44.000 0.00 0.00 38.98 3.51
49 50 6.555463 TGGGACTAACCTATTGACCTAAAG 57.445 41.667 0.00 0.00 38.98 1.85
50 51 6.956102 TTGGGACTAACCTATTGACCTAAA 57.044 37.500 0.00 0.00 38.98 1.85
51 52 6.956102 TTTGGGACTAACCTATTGACCTAA 57.044 37.500 0.00 0.00 38.98 2.69
52 53 6.956102 TTTTGGGACTAACCTATTGACCTA 57.044 37.500 0.00 0.00 38.98 3.08
53 54 5.853572 TTTTGGGACTAACCTATTGACCT 57.146 39.130 0.00 0.00 38.98 3.85
54 55 6.661805 TGATTTTTGGGACTAACCTATTGACC 59.338 38.462 0.00 0.00 38.98 4.02
55 56 7.696992 TGATTTTTGGGACTAACCTATTGAC 57.303 36.000 0.00 0.00 38.98 3.18
108 109 9.723447 CGCTATTGTATTATCTATCTCGAATGT 57.277 33.333 0.00 0.00 0.00 2.71
109 110 9.723447 ACGCTATTGTATTATCTATCTCGAATG 57.277 33.333 0.00 0.00 0.00 2.67
110 111 9.723447 CACGCTATTGTATTATCTATCTCGAAT 57.277 33.333 0.00 0.00 0.00 3.34
111 112 8.182227 CCACGCTATTGTATTATCTATCTCGAA 58.818 37.037 0.00 0.00 0.00 3.71
112 113 7.551617 TCCACGCTATTGTATTATCTATCTCGA 59.448 37.037 0.00 0.00 0.00 4.04
113 114 7.694886 TCCACGCTATTGTATTATCTATCTCG 58.305 38.462 0.00 0.00 0.00 4.04
114 115 9.291664 GTTCCACGCTATTGTATTATCTATCTC 57.708 37.037 0.00 0.00 0.00 2.75
115 116 8.803235 TGTTCCACGCTATTGTATTATCTATCT 58.197 33.333 0.00 0.00 0.00 1.98
116 117 8.981724 TGTTCCACGCTATTGTATTATCTATC 57.018 34.615 0.00 0.00 0.00 2.08
117 118 9.944376 ATTGTTCCACGCTATTGTATTATCTAT 57.056 29.630 0.00 0.00 0.00 1.98
118 119 9.772973 AATTGTTCCACGCTATTGTATTATCTA 57.227 29.630 0.00 0.00 0.00 1.98
119 120 8.677148 AATTGTTCCACGCTATTGTATTATCT 57.323 30.769 0.00 0.00 0.00 1.98
123 124 9.915629 TTTTTAATTGTTCCACGCTATTGTATT 57.084 25.926 0.00 0.00 0.00 1.89
125 126 9.915629 AATTTTTAATTGTTCCACGCTATTGTA 57.084 25.926 0.00 0.00 0.00 2.41
126 127 8.825667 AATTTTTAATTGTTCCACGCTATTGT 57.174 26.923 0.00 0.00 0.00 2.71
160 161 2.358267 AGGATCGTGATACGTCTCCAAC 59.642 50.000 19.58 0.00 42.53 3.77
161 162 2.617308 GAGGATCGTGATACGTCTCCAA 59.383 50.000 19.58 0.00 42.53 3.53
162 163 2.219458 GAGGATCGTGATACGTCTCCA 58.781 52.381 19.58 0.00 42.53 3.86
163 164 2.219458 TGAGGATCGTGATACGTCTCC 58.781 52.381 13.72 13.72 43.14 3.71
164 165 2.224549 CCTGAGGATCGTGATACGTCTC 59.775 54.545 0.00 0.00 43.14 3.36
165 166 2.222886 CCTGAGGATCGTGATACGTCT 58.777 52.381 0.00 0.00 43.14 4.18
166 167 1.948145 ACCTGAGGATCGTGATACGTC 59.052 52.381 4.99 0.00 43.14 4.34
167 168 1.676529 CACCTGAGGATCGTGATACGT 59.323 52.381 4.99 0.00 43.14 3.57
168 169 1.600663 GCACCTGAGGATCGTGATACG 60.601 57.143 4.99 0.00 44.19 3.06
169 170 1.409064 TGCACCTGAGGATCGTGATAC 59.591 52.381 4.99 0.00 38.61 2.24
170 171 1.775385 TGCACCTGAGGATCGTGATA 58.225 50.000 4.99 0.00 38.61 2.15
171 172 1.126488 ATGCACCTGAGGATCGTGAT 58.874 50.000 4.99 0.00 38.61 3.06
172 173 0.176449 CATGCACCTGAGGATCGTGA 59.824 55.000 4.99 0.00 38.61 4.35
173 174 0.812811 CCATGCACCTGAGGATCGTG 60.813 60.000 4.99 7.69 38.61 4.35
174 175 1.524002 CCATGCACCTGAGGATCGT 59.476 57.895 4.99 0.00 38.61 3.73
175 176 1.890979 GCCATGCACCTGAGGATCG 60.891 63.158 4.99 0.00 38.61 3.69
176 177 0.178998 ATGCCATGCACCTGAGGATC 60.179 55.000 4.99 0.00 43.04 3.36
177 178 0.178998 GATGCCATGCACCTGAGGAT 60.179 55.000 4.99 0.00 43.04 3.24
178 179 1.225426 GATGCCATGCACCTGAGGA 59.775 57.895 4.99 0.00 43.04 3.71
179 180 2.184830 CGATGCCATGCACCTGAGG 61.185 63.158 0.00 0.00 43.04 3.86
194 195 7.970614 GGAATACAAATTCAAAGAAGAAGCGAT 59.029 33.333 0.00 0.00 42.88 4.58
210 211 8.112183 AGGAGAATTGAAGTCTGGAATACAAAT 58.888 33.333 0.00 0.00 0.00 2.32
238 239 2.105993 ACACCGGAGCTCCTTTAAACTT 59.894 45.455 29.73 3.66 0.00 2.66
244 245 1.867363 ATCTACACCGGAGCTCCTTT 58.133 50.000 29.73 14.00 0.00 3.11
246 247 1.404843 GAATCTACACCGGAGCTCCT 58.595 55.000 29.73 14.17 0.00 3.69
280 281 2.824341 AGAAATCCTAACGTCACGGTCT 59.176 45.455 0.35 0.00 0.00 3.85
284 285 4.421058 TGATGAGAAATCCTAACGTCACG 58.579 43.478 0.00 0.00 0.00 4.35
289 290 3.185188 CCGCATGATGAGAAATCCTAACG 59.815 47.826 0.00 0.00 0.00 3.18
309 311 1.860950 CAACTCACACAAGTCTCACCG 59.139 52.381 0.00 0.00 0.00 4.94
317 319 4.756642 TGGATCTAAAGCAACTCACACAAG 59.243 41.667 0.00 0.00 0.00 3.16
366 369 0.173708 GTGCCTCTAAGGACCACTCG 59.826 60.000 0.00 0.00 37.67 4.18
380 383 2.644555 AAGTCTTCGTGCACGTGCCT 62.645 55.000 35.72 22.55 41.18 4.75
402 405 1.414550 TGACCTTGTCGATGACAACCA 59.585 47.619 8.21 4.87 45.88 3.67
467 470 2.895404 ACCACATAACGACCACTACTGT 59.105 45.455 0.00 0.00 0.00 3.55
492 495 9.813446 ACCTAATAAAAATTACGTCGAGATTCT 57.187 29.630 0.00 0.00 0.00 2.40
595 608 3.209410 GTGAGATGCAGGATTAGGTTGG 58.791 50.000 0.00 0.00 0.00 3.77
612 625 7.113658 AGAGTGGGTAATAATGTACTGTGAG 57.886 40.000 0.00 0.00 0.00 3.51
630 643 1.276421 ACTTCATCAACGGGAGAGTGG 59.724 52.381 0.00 0.00 0.00 4.00
646 659 1.936547 GGCAGTTGGATCGATGACTTC 59.063 52.381 0.54 0.00 0.00 3.01
716 736 4.489771 GGGCCACGTGGGAGATGG 62.490 72.222 34.58 9.28 40.01 3.51
763 783 4.980805 TGAGAACCGCACGTGGCC 62.981 66.667 18.88 0.00 40.31 5.36
809 829 2.106074 TTGGCTGGATGCGCGTTAG 61.106 57.895 8.43 7.02 44.05 2.34
810 830 2.046796 TTGGCTGGATGCGCGTTA 60.047 55.556 8.43 0.00 44.05 3.18
811 831 3.737172 GTTGGCTGGATGCGCGTT 61.737 61.111 8.43 0.00 44.05 4.84
833 853 1.153823 GGCGAGCTGTGTACATCGT 60.154 57.895 15.73 0.00 37.49 3.73
838 858 0.458716 GAGAAGGGCGAGCTGTGTAC 60.459 60.000 0.00 0.00 0.00 2.90
839 859 1.605058 GGAGAAGGGCGAGCTGTGTA 61.605 60.000 0.00 0.00 0.00 2.90
841 861 2.125350 GGAGAAGGGCGAGCTGTG 60.125 66.667 0.00 0.00 0.00 3.66
849 869 2.614013 TGGGGGAAGGAGAAGGGC 60.614 66.667 0.00 0.00 0.00 5.19
914 935 6.794636 GTGTTTTGTTGTGGTGATTTTGTTTC 59.205 34.615 0.00 0.00 0.00 2.78
937 959 6.940831 ATTTGGAAGGGAAAAACAATTGTG 57.059 33.333 12.82 0.00 0.00 3.33
1024 1047 2.415625 CCGAGTCGAATTCGTCTTCCTT 60.416 50.000 24.62 6.32 37.82 3.36
1244 1267 5.882557 ACCACTTAAGATCGAATCAAATGCT 59.117 36.000 10.09 0.00 0.00 3.79
1294 1317 0.687354 AGAAGGCGGAAGAAAGCAGA 59.313 50.000 0.00 0.00 34.54 4.26
1422 1445 2.796032 GCCGCATACAAAAGATCAAGCC 60.796 50.000 0.00 0.00 0.00 4.35
1466 1491 8.396390 CACATTTTCTCCATCAGTTATTCAGAG 58.604 37.037 0.00 0.00 0.00 3.35
1476 1501 3.054139 TCCCCTCACATTTTCTCCATCAG 60.054 47.826 0.00 0.00 0.00 2.90
1502 1527 5.298276 TCAAACACTAAACTGATTTTCGCCT 59.702 36.000 0.00 0.00 0.00 5.52
1511 1536 6.770785 ACAGCCTTAATCAAACACTAAACTGA 59.229 34.615 0.00 0.00 0.00 3.41
1664 1689 1.608283 GGTATATTCGAGGCTGTGGGC 60.608 57.143 0.00 0.00 40.90 5.36
1665 1690 1.971357 AGGTATATTCGAGGCTGTGGG 59.029 52.381 0.00 0.00 0.00 4.61
1666 1691 4.866508 TTAGGTATATTCGAGGCTGTGG 57.133 45.455 0.00 0.00 0.00 4.17
1667 1692 6.587990 CAGATTTAGGTATATTCGAGGCTGTG 59.412 42.308 0.00 0.00 0.00 3.66
1668 1693 6.295349 CCAGATTTAGGTATATTCGAGGCTGT 60.295 42.308 0.00 0.00 0.00 4.40
1669 1694 6.071334 TCCAGATTTAGGTATATTCGAGGCTG 60.071 42.308 0.00 0.00 0.00 4.85
1670 1695 6.017192 TCCAGATTTAGGTATATTCGAGGCT 58.983 40.000 0.00 0.00 0.00 4.58
1671 1696 6.282199 TCCAGATTTAGGTATATTCGAGGC 57.718 41.667 0.00 0.00 0.00 4.70
1903 1935 0.896019 AGCCGATCTGTATCTCCCGG 60.896 60.000 0.00 0.00 39.88 5.73
1924 1956 8.978874 TTTCATGATAGCATACTACCAACATT 57.021 30.769 0.00 0.00 32.27 2.71
1956 1989 0.166814 GGTGTTCAGCGAAGACATGC 59.833 55.000 16.14 0.00 37.52 4.06
2073 2353 7.046652 CAGAGATGGTACTTGTGAATCATTCT 58.953 38.462 0.00 0.00 0.00 2.40
2091 2371 8.514594 TGGCAGTTTAATTTAGAAACAGAGATG 58.485 33.333 5.38 0.00 38.91 2.90
2093 2373 8.458573 TTGGCAGTTTAATTTAGAAACAGAGA 57.541 30.769 5.38 0.00 38.91 3.10
2108 2388 8.325421 TGAATATAAGACGTTTTGGCAGTTTA 57.675 30.769 0.83 0.00 0.00 2.01
2109 2389 7.209471 TGAATATAAGACGTTTTGGCAGTTT 57.791 32.000 0.83 0.00 0.00 2.66
2191 2495 7.552459 TCGTATGGATGAACAACATTCTCTAA 58.448 34.615 0.00 0.00 39.56 2.10
2408 2748 6.509418 TCAACCTAACTGCATAATTTGACC 57.491 37.500 0.00 0.00 0.00 4.02
2607 2948 5.361571 TGTCTCTGGTTAAGTTGTGTACAGA 59.638 40.000 0.00 0.00 33.08 3.41
2625 2966 9.107177 CTCAATCTGCATTTATTTACTGTCTCT 57.893 33.333 0.00 0.00 0.00 3.10
2885 3226 4.142730 GCTGCTTTGACTTAAGACAGATGG 60.143 45.833 10.09 2.51 34.27 3.51
3048 3389 2.291089 TGGGCTCTCAATTGCAATCTCA 60.291 45.455 13.38 1.92 0.00 3.27
3097 3438 2.359981 TCATTATCCTCCCGACGAGT 57.640 50.000 0.00 0.00 36.82 4.18
3120 3461 2.488204 TGTGAGGCAATCGATCCAAA 57.512 45.000 0.00 0.00 0.00 3.28
3702 4044 9.632638 AATCATAATAGCACAACAAATAGAGGT 57.367 29.630 0.00 0.00 0.00 3.85
3947 4413 2.129785 GGCATAAGCTTGGGCCCTG 61.130 63.158 25.70 17.09 40.55 4.45
5007 5480 4.156922 AGACACTAATCAGACCGTGAAGAG 59.843 45.833 0.00 0.00 39.19 2.85
5013 5486 4.220821 ACAATGAGACACTAATCAGACCGT 59.779 41.667 0.00 0.00 0.00 4.83
5015 5488 5.724328 TGACAATGAGACACTAATCAGACC 58.276 41.667 0.00 0.00 0.00 3.85
5025 5498 6.742718 CGGAACATATTTTGACAATGAGACAC 59.257 38.462 0.00 0.00 0.00 3.67
5081 5554 3.810941 CAGTAACCAACAAAGGCTCGTAA 59.189 43.478 0.00 0.00 0.00 3.18
5082 5555 3.069872 TCAGTAACCAACAAAGGCTCGTA 59.930 43.478 0.00 0.00 0.00 3.43
5083 5556 2.158871 TCAGTAACCAACAAAGGCTCGT 60.159 45.455 0.00 0.00 0.00 4.18
5119 5607 4.457834 TCTCTAGCCAGTCTGCTAAAAC 57.542 45.455 0.00 0.00 42.93 2.43
5168 5656 6.753180 TCTGATCAGCATCTGGTATTTAGAC 58.247 40.000 18.36 0.00 31.51 2.59
5246 5734 9.674824 GAGTACGTAGCAACATAAATAGTACAT 57.325 33.333 0.00 0.00 35.67 2.29
5267 5755 4.134563 TGGTTTCTTTCTGCAAGGAGTAC 58.865 43.478 0.00 0.00 32.64 2.73
5270 5758 5.964958 TTATGGTTTCTTTCTGCAAGGAG 57.035 39.130 0.00 0.00 32.64 3.69
5272 5760 8.087750 TGTAATTTATGGTTTCTTTCTGCAAGG 58.912 33.333 0.00 0.00 32.64 3.61
5274 5762 9.995003 AATGTAATTTATGGTTTCTTTCTGCAA 57.005 25.926 0.00 0.00 26.74 4.08
5275 5763 9.421806 CAATGTAATTTATGGTTTCTTTCTGCA 57.578 29.630 0.00 0.00 31.22 4.41
5276 5764 9.423061 ACAATGTAATTTATGGTTTCTTTCTGC 57.577 29.630 0.00 0.00 31.22 4.26
5282 5770 9.185680 GGGACTACAATGTAATTTATGGTTTCT 57.814 33.333 0.00 0.00 31.22 2.52
5283 5771 9.185680 AGGGACTACAATGTAATTTATGGTTTC 57.814 33.333 0.00 0.00 36.02 2.78
5285 5773 8.557450 AGAGGGACTACAATGTAATTTATGGTT 58.443 33.333 0.00 0.00 41.55 3.67
5286 5774 7.993183 CAGAGGGACTACAATGTAATTTATGGT 59.007 37.037 0.00 0.00 41.55 3.55
5287 5775 7.993183 ACAGAGGGACTACAATGTAATTTATGG 59.007 37.037 0.00 0.00 41.55 2.74
5288 5776 8.964476 ACAGAGGGACTACAATGTAATTTATG 57.036 34.615 0.00 0.00 41.55 1.90
5289 5777 9.975218 AAACAGAGGGACTACAATGTAATTTAT 57.025 29.630 0.00 0.00 41.55 1.40
5290 5778 9.444600 GAAACAGAGGGACTACAATGTAATTTA 57.555 33.333 0.00 0.00 41.55 1.40
5291 5779 8.164070 AGAAACAGAGGGACTACAATGTAATTT 58.836 33.333 0.00 0.00 41.55 1.82
5292 5780 7.690256 AGAAACAGAGGGACTACAATGTAATT 58.310 34.615 0.00 0.00 41.55 1.40
5293 5781 7.259088 AGAAACAGAGGGACTACAATGTAAT 57.741 36.000 0.00 0.00 41.55 1.89
5294 5782 6.681729 AGAAACAGAGGGACTACAATGTAA 57.318 37.500 0.00 0.00 41.55 2.41
5300 5788 9.667107 CAAATATTTAGAAACAGAGGGACTACA 57.333 33.333 0.00 0.00 41.55 2.74
5302 5790 9.886132 GACAAATATTTAGAAACAGAGGGACTA 57.114 33.333 0.00 0.00 41.55 2.59
5304 5792 8.794335 AGACAAATATTTAGAAACAGAGGGAC 57.206 34.615 0.00 0.00 0.00 4.46
5305 5793 9.807921 AAAGACAAATATTTAGAAACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
5323 5811 9.573166 TCCATTTGAAATCTCTAGAAAGACAAA 57.427 29.630 0.00 4.41 0.00 2.83
5324 5812 9.745018 ATCCATTTGAAATCTCTAGAAAGACAA 57.255 29.630 0.00 0.00 0.00 3.18
5325 5813 9.745018 AATCCATTTGAAATCTCTAGAAAGACA 57.255 29.630 0.00 0.00 0.00 3.41
5329 5817 9.973661 TGGTAATCCATTTGAAATCTCTAGAAA 57.026 29.630 0.00 0.00 39.03 2.52
5330 5818 9.396022 GTGGTAATCCATTTGAAATCTCTAGAA 57.604 33.333 0.00 0.00 46.20 2.10
5331 5819 8.548025 TGTGGTAATCCATTTGAAATCTCTAGA 58.452 33.333 0.00 0.00 46.20 2.43
5332 5820 8.737168 TGTGGTAATCCATTTGAAATCTCTAG 57.263 34.615 0.00 0.00 46.20 2.43
5334 5822 9.125026 GTATGTGGTAATCCATTTGAAATCTCT 57.875 33.333 0.00 0.00 46.20 3.10
5335 5823 8.902806 TGTATGTGGTAATCCATTTGAAATCTC 58.097 33.333 0.00 0.00 46.20 2.75
5336 5824 8.821686 TGTATGTGGTAATCCATTTGAAATCT 57.178 30.769 0.00 0.00 46.20 2.40
5337 5825 8.902806 TCTGTATGTGGTAATCCATTTGAAATC 58.097 33.333 0.00 0.00 46.20 2.17
5338 5826 8.821686 TCTGTATGTGGTAATCCATTTGAAAT 57.178 30.769 0.00 0.00 46.20 2.17
5339 5827 8.685427 CATCTGTATGTGGTAATCCATTTGAAA 58.315 33.333 0.00 0.00 46.20 2.69
5340 5828 7.833682 ACATCTGTATGTGGTAATCCATTTGAA 59.166 33.333 0.00 0.00 44.79 2.69
5341 5829 7.345691 ACATCTGTATGTGGTAATCCATTTGA 58.654 34.615 0.00 0.00 44.79 2.69
5342 5830 7.572523 ACATCTGTATGTGGTAATCCATTTG 57.427 36.000 0.00 0.00 44.79 2.32
5376 5864 9.391006 ACGGAGCAAAATAAGTGATCTAAAATA 57.609 29.630 0.00 0.00 32.02 1.40
5377 5865 8.281212 ACGGAGCAAAATAAGTGATCTAAAAT 57.719 30.769 0.00 0.00 32.02 1.82
5378 5866 7.681939 ACGGAGCAAAATAAGTGATCTAAAA 57.318 32.000 0.00 0.00 32.02 1.52
5379 5867 7.009815 CGTACGGAGCAAAATAAGTGATCTAAA 59.990 37.037 7.57 0.00 32.02 1.85
5380 5868 6.474427 CGTACGGAGCAAAATAAGTGATCTAA 59.526 38.462 7.57 0.00 32.02 2.10
5381 5869 5.975344 CGTACGGAGCAAAATAAGTGATCTA 59.025 40.000 7.57 0.00 32.02 1.98
5382 5870 4.804139 CGTACGGAGCAAAATAAGTGATCT 59.196 41.667 7.57 0.00 32.02 2.75
5383 5871 4.565564 ACGTACGGAGCAAAATAAGTGATC 59.434 41.667 21.06 0.00 0.00 2.92
5384 5872 4.501071 ACGTACGGAGCAAAATAAGTGAT 58.499 39.130 21.06 0.00 0.00 3.06
5385 5873 3.916761 ACGTACGGAGCAAAATAAGTGA 58.083 40.909 21.06 0.00 0.00 3.41
5386 5874 4.860907 ACTACGTACGGAGCAAAATAAGTG 59.139 41.667 27.33 0.06 0.00 3.16
5387 5875 5.064441 ACTACGTACGGAGCAAAATAAGT 57.936 39.130 27.33 2.13 0.00 2.24
5388 5876 5.004156 GTGACTACGTACGGAGCAAAATAAG 59.996 44.000 27.33 1.42 0.00 1.73
5389 5877 4.858692 GTGACTACGTACGGAGCAAAATAA 59.141 41.667 27.33 0.00 0.00 1.40
5390 5878 4.156556 AGTGACTACGTACGGAGCAAAATA 59.843 41.667 27.33 4.74 0.00 1.40
5391 5879 3.057033 AGTGACTACGTACGGAGCAAAAT 60.057 43.478 27.33 7.40 0.00 1.82
5392 5880 2.294233 AGTGACTACGTACGGAGCAAAA 59.706 45.455 27.33 7.64 0.00 2.44
5393 5881 1.881973 AGTGACTACGTACGGAGCAAA 59.118 47.619 27.33 10.27 0.00 3.68
5394 5882 1.527034 AGTGACTACGTACGGAGCAA 58.473 50.000 27.33 12.96 0.00 3.91
5395 5883 1.198408 CAAGTGACTACGTACGGAGCA 59.802 52.381 27.33 21.55 0.00 4.26
5396 5884 1.198637 ACAAGTGACTACGTACGGAGC 59.801 52.381 27.33 19.29 0.00 4.70
5397 5885 3.058708 TCAACAAGTGACTACGTACGGAG 60.059 47.826 25.90 25.90 0.00 4.63
5398 5886 2.877786 TCAACAAGTGACTACGTACGGA 59.122 45.455 21.06 10.81 0.00 4.69
5399 5887 3.272439 TCAACAAGTGACTACGTACGG 57.728 47.619 21.06 5.00 0.00 4.02
5400 5888 5.817616 ATTTCAACAAGTGACTACGTACG 57.182 39.130 15.01 15.01 35.39 3.67
5401 5889 8.684973 AGATATTTCAACAAGTGACTACGTAC 57.315 34.615 0.00 0.00 35.39 3.67
5402 5890 9.999009 CTAGATATTTCAACAAGTGACTACGTA 57.001 33.333 0.00 0.00 35.39 3.57
5403 5891 8.737175 TCTAGATATTTCAACAAGTGACTACGT 58.263 33.333 0.00 0.00 35.39 3.57
5404 5892 9.569167 TTCTAGATATTTCAACAAGTGACTACG 57.431 33.333 0.00 0.00 35.39 3.51
5409 5897 9.996554 TGTCTTTCTAGATATTTCAACAAGTGA 57.003 29.630 0.00 0.00 31.86 3.41
5427 5915 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
5428 5916 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
5429 5917 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
5430 5918 7.336176 GTCCCTCCGTTTCTAAATATTTGTCTT 59.664 37.037 11.05 0.00 0.00 3.01
5431 5919 6.822170 GTCCCTCCGTTTCTAAATATTTGTCT 59.178 38.462 11.05 0.00 0.00 3.41
5432 5920 6.822170 AGTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
5433 5921 6.718294 AGTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
5434 5922 7.767198 TGTAGTCCCTCCGTTTCTAAATATTTG 59.233 37.037 11.05 1.65 0.00 2.32
5435 5923 7.854337 TGTAGTCCCTCCGTTTCTAAATATTT 58.146 34.615 5.89 5.89 0.00 1.40
5436 5924 7.427989 TGTAGTCCCTCCGTTTCTAAATATT 57.572 36.000 0.00 0.00 0.00 1.28
5437 5925 7.427989 TTGTAGTCCCTCCGTTTCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
5438 5926 6.855763 TTGTAGTCCCTCCGTTTCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
5439 5927 5.750352 TTGTAGTCCCTCCGTTTCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
5440 5928 5.012354 ACATTGTAGTCCCTCCGTTTCTAAA 59.988 40.000 0.00 0.00 0.00 1.85
5441 5929 4.529377 ACATTGTAGTCCCTCCGTTTCTAA 59.471 41.667 0.00 0.00 0.00 2.10
5442 5930 4.091549 ACATTGTAGTCCCTCCGTTTCTA 58.908 43.478 0.00 0.00 0.00 2.10
5443 5931 2.904434 ACATTGTAGTCCCTCCGTTTCT 59.096 45.455 0.00 0.00 0.00 2.52
5444 5932 3.329929 ACATTGTAGTCCCTCCGTTTC 57.670 47.619 0.00 0.00 0.00 2.78
5445 5933 5.431179 AATACATTGTAGTCCCTCCGTTT 57.569 39.130 2.53 0.00 0.00 3.60
5446 5934 5.431179 AAATACATTGTAGTCCCTCCGTT 57.569 39.130 2.53 0.00 0.00 4.44
5447 5935 5.431179 AAAATACATTGTAGTCCCTCCGT 57.569 39.130 2.53 0.00 0.00 4.69
5448 5936 6.426937 CCATAAAATACATTGTAGTCCCTCCG 59.573 42.308 2.53 0.00 0.00 4.63
5449 5937 7.287810 ACCATAAAATACATTGTAGTCCCTCC 58.712 38.462 2.53 0.00 0.00 4.30
5450 5938 8.747538 AACCATAAAATACATTGTAGTCCCTC 57.252 34.615 2.53 0.00 0.00 4.30
5451 5939 9.541884 AAAACCATAAAATACATTGTAGTCCCT 57.458 29.630 2.53 0.00 0.00 4.20
5455 5943 9.988815 TGCAAAAACCATAAAATACATTGTAGT 57.011 25.926 2.53 0.00 0.00 2.73
5491 5979 4.877823 GGATTGCAGCCATCGATCATATTA 59.122 41.667 0.00 0.00 0.00 0.98
5494 5982 2.038820 TGGATTGCAGCCATCGATCATA 59.961 45.455 6.30 0.00 0.00 2.15
5516 6004 2.368439 GCCAGCACCATCAATCAACTA 58.632 47.619 0.00 0.00 0.00 2.24
5579 6067 6.064717 AGGAGAACAACAGCAGAAGTAAAAT 58.935 36.000 0.00 0.00 0.00 1.82
5580 6068 5.437060 AGGAGAACAACAGCAGAAGTAAAA 58.563 37.500 0.00 0.00 0.00 1.52
5581 6069 5.036117 AGGAGAACAACAGCAGAAGTAAA 57.964 39.130 0.00 0.00 0.00 2.01
5664 6152 1.142688 AGATGGCCACCTTTCCTGGT 61.143 55.000 8.16 0.00 41.77 4.00
5698 6186 1.139058 TCCGCAAATAGAAGGAGAGCC 59.861 52.381 0.00 0.00 0.00 4.70
5734 6222 5.648960 TGCATTCTTTTCATCAGCAGACATA 59.351 36.000 0.00 0.00 0.00 2.29
5735 6223 4.461431 TGCATTCTTTTCATCAGCAGACAT 59.539 37.500 0.00 0.00 0.00 3.06
5782 6332 2.993899 ACCTGAGCTCGTACAATTTTCG 59.006 45.455 9.64 0.00 0.00 3.46
5786 6336 2.826128 TCTGACCTGAGCTCGTACAATT 59.174 45.455 9.64 0.00 0.00 2.32
5790 6340 1.066303 CCATCTGACCTGAGCTCGTAC 59.934 57.143 9.64 1.28 0.00 3.67
5800 6350 2.830923 CTCTTCACTCACCATCTGACCT 59.169 50.000 0.00 0.00 0.00 3.85
5883 6433 5.221722 GGGGACTCTGTCATGATATTTAGCA 60.222 44.000 0.00 0.00 33.68 3.49
5893 6443 3.012518 GTCATTTGGGGACTCTGTCATG 58.987 50.000 0.07 0.00 33.68 3.07
5907 6457 0.667993 ACCCACGCACTTGTCATTTG 59.332 50.000 0.00 0.00 0.00 2.32
5921 6471 1.228533 CATTGCAGGCAAAAACCCAC 58.771 50.000 11.10 0.00 39.55 4.61
5926 6476 0.108207 CCCACCATTGCAGGCAAAAA 59.892 50.000 11.10 0.00 39.55 1.94
5949 6499 1.463444 CGGAAACAATCTGAACGGTCC 59.537 52.381 0.00 0.00 36.44 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.