Multiple sequence alignment - TraesCS1A01G118100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G118100 chr1A 100.000 3782 0 0 1 3782 126510799 126514580 0.000000e+00 6985.0
1 TraesCS1A01G118100 chr1A 100.000 2339 0 0 4074 6412 126514872 126517210 0.000000e+00 4320.0
2 TraesCS1A01G118100 chr1A 95.852 916 33 1 5502 6412 556980718 556979803 0.000000e+00 1476.0
3 TraesCS1A01G118100 chr1D 94.572 1308 41 13 970 2263 115366441 115367732 0.000000e+00 1995.0
4 TraesCS1A01G118100 chr1D 89.983 1208 82 16 4295 5500 115369352 115370522 0.000000e+00 1524.0
5 TraesCS1A01G118100 chr1D 90.969 908 25 20 2890 3782 115367944 115368809 0.000000e+00 1170.0
6 TraesCS1A01G118100 chr1D 92.000 225 11 4 2523 2747 115367728 115367945 6.240000e-80 309.0
7 TraesCS1A01G118100 chr1D 93.814 97 4 2 4074 4170 115368849 115368943 1.860000e-30 145.0
8 TraesCS1A01G118100 chr1B 92.226 1325 50 23 972 2263 176783823 176785127 0.000000e+00 1827.0
9 TraesCS1A01G118100 chr1B 91.429 1120 37 15 4074 5185 176786363 176787431 0.000000e+00 1482.0
10 TraesCS1A01G118100 chr1B 91.485 505 17 11 2929 3417 176785382 176785876 0.000000e+00 671.0
11 TraesCS1A01G118100 chr1B 88.158 228 7 8 3464 3691 176786040 176786247 2.970000e-63 254.0
12 TraesCS1A01G118100 chr1B 93.976 83 4 1 2523 2605 176785123 176785204 2.430000e-24 124.0
13 TraesCS1A01G118100 chr1B 98.182 55 1 0 2890 2944 176785314 176785368 5.290000e-16 97.1
14 TraesCS1A01G118100 chr1B 84.071 113 5 7 5395 5500 176804355 176804461 5.290000e-16 97.1
15 TraesCS1A01G118100 chr1B 85.484 62 0 2 3730 3782 176786262 176786323 8.980000e-04 56.5
16 TraesCS1A01G118100 chr3A 96.487 911 31 1 5502 6412 512587401 512586492 0.000000e+00 1504.0
17 TraesCS1A01G118100 chr3A 94.045 974 49 6 1 966 79860115 79859143 0.000000e+00 1469.0
18 TraesCS1A01G118100 chr3A 93.961 977 48 4 1 966 524749129 524750105 0.000000e+00 1467.0
19 TraesCS1A01G118100 chr7A 96.288 916 29 1 5502 6412 584168200 584169115 0.000000e+00 1498.0
20 TraesCS1A01G118100 chr7A 95.939 911 36 1 5502 6412 635062468 635061559 0.000000e+00 1476.0
21 TraesCS1A01G118100 chr7A 94.051 975 49 4 1 966 57086403 57087377 0.000000e+00 1471.0
22 TraesCS1A01G118100 chr5A 94.559 974 45 3 1 966 563641481 563642454 0.000000e+00 1498.0
23 TraesCS1A01G118100 chr5A 96.268 911 34 0 5502 6412 245457731 245456821 0.000000e+00 1495.0
24 TraesCS1A01G118100 chr5A 94.634 969 45 6 3 966 667439088 667440054 0.000000e+00 1495.0
25 TraesCS1A01G118100 chr5A 95.367 259 11 1 2269 2526 347015723 347015981 1.660000e-110 411.0
26 TraesCS1A01G118100 chr5A 94.275 262 15 0 2269 2530 692175846 692175585 1.000000e-107 401.0
27 TraesCS1A01G118100 chr5A 90.909 44 4 0 5240 5283 111591136 111591093 6.940000e-05 60.2
28 TraesCS1A01G118100 chr6A 94.439 971 49 4 1 966 573288157 573287187 0.000000e+00 1489.0
29 TraesCS1A01G118100 chr6A 95.961 916 35 2 5497 6412 359153386 359154299 0.000000e+00 1485.0
30 TraesCS1A01G118100 chr6A 94.336 971 48 5 1 966 41068712 41067744 0.000000e+00 1482.0
31 TraesCS1A01G118100 chr6A 95.939 911 35 2 5502 6412 359193527 359194435 0.000000e+00 1476.0
32 TraesCS1A01G118100 chr6A 97.692 260 6 0 2269 2528 456766222 456765963 1.270000e-121 448.0
33 TraesCS1A01G118100 chr6A 94.253 261 15 0 2269 2529 31465982 31466242 3.600000e-107 399.0
34 TraesCS1A01G118100 chr6A 92.989 271 19 0 2256 2526 53260249 53260519 4.660000e-106 396.0
35 TraesCS1A01G118100 chr4A 94.439 971 49 4 1 966 96517835 96518805 0.000000e+00 1489.0
36 TraesCS1A01G118100 chr4A 95.833 912 38 0 5501 6412 578014855 578015766 0.000000e+00 1474.0
37 TraesCS1A01G118100 chrUn 94.439 971 47 5 1 966 346652917 346651949 0.000000e+00 1487.0
38 TraesCS1A01G118100 chr2A 96.053 912 35 1 5502 6412 636047749 636048660 0.000000e+00 1483.0
39 TraesCS1A01G118100 chr2A 97.287 258 7 0 2269 2526 534605714 534605457 7.630000e-119 438.0
40 TraesCS1A01G118100 chr2A 94.961 258 13 0 2269 2526 163668435 163668692 7.740000e-109 405.0
41 TraesCS1A01G118100 chr2A 94.961 258 13 0 2269 2526 722826985 722827242 7.740000e-109 405.0
42 TraesCS1A01G118100 chr4B 94.961 258 13 0 2269 2526 645070036 645070293 7.740000e-109 405.0
43 TraesCS1A01G118100 chr3B 85.830 247 32 1 1713 1959 132622784 132623027 6.380000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G118100 chr1A 126510799 126517210 6411 False 5652.500000 6985 100.000000 1 6412 2 chr1A.!!$F1 6411
1 TraesCS1A01G118100 chr1A 556979803 556980718 915 True 1476.000000 1476 95.852000 5502 6412 1 chr1A.!!$R1 910
2 TraesCS1A01G118100 chr1D 115366441 115370522 4081 False 1028.600000 1995 92.267600 970 5500 5 chr1D.!!$F1 4530
3 TraesCS1A01G118100 chr1B 176783823 176787431 3608 False 644.514286 1827 91.562857 972 5185 7 chr1B.!!$F2 4213
4 TraesCS1A01G118100 chr3A 512586492 512587401 909 True 1504.000000 1504 96.487000 5502 6412 1 chr3A.!!$R2 910
5 TraesCS1A01G118100 chr3A 79859143 79860115 972 True 1469.000000 1469 94.045000 1 966 1 chr3A.!!$R1 965
6 TraesCS1A01G118100 chr3A 524749129 524750105 976 False 1467.000000 1467 93.961000 1 966 1 chr3A.!!$F1 965
7 TraesCS1A01G118100 chr7A 584168200 584169115 915 False 1498.000000 1498 96.288000 5502 6412 1 chr7A.!!$F2 910
8 TraesCS1A01G118100 chr7A 635061559 635062468 909 True 1476.000000 1476 95.939000 5502 6412 1 chr7A.!!$R1 910
9 TraesCS1A01G118100 chr7A 57086403 57087377 974 False 1471.000000 1471 94.051000 1 966 1 chr7A.!!$F1 965
10 TraesCS1A01G118100 chr5A 563641481 563642454 973 False 1498.000000 1498 94.559000 1 966 1 chr5A.!!$F2 965
11 TraesCS1A01G118100 chr5A 245456821 245457731 910 True 1495.000000 1495 96.268000 5502 6412 1 chr5A.!!$R2 910
12 TraesCS1A01G118100 chr5A 667439088 667440054 966 False 1495.000000 1495 94.634000 3 966 1 chr5A.!!$F3 963
13 TraesCS1A01G118100 chr6A 573287187 573288157 970 True 1489.000000 1489 94.439000 1 966 1 chr6A.!!$R3 965
14 TraesCS1A01G118100 chr6A 359153386 359154299 913 False 1485.000000 1485 95.961000 5497 6412 1 chr6A.!!$F3 915
15 TraesCS1A01G118100 chr6A 41067744 41068712 968 True 1482.000000 1482 94.336000 1 966 1 chr6A.!!$R1 965
16 TraesCS1A01G118100 chr6A 359193527 359194435 908 False 1476.000000 1476 95.939000 5502 6412 1 chr6A.!!$F4 910
17 TraesCS1A01G118100 chr4A 96517835 96518805 970 False 1489.000000 1489 94.439000 1 966 1 chr4A.!!$F1 965
18 TraesCS1A01G118100 chr4A 578014855 578015766 911 False 1474.000000 1474 95.833000 5501 6412 1 chr4A.!!$F2 911
19 TraesCS1A01G118100 chrUn 346651949 346652917 968 True 1487.000000 1487 94.439000 1 966 1 chrUn.!!$R1 965
20 TraesCS1A01G118100 chr2A 636047749 636048660 911 False 1483.000000 1483 96.053000 5502 6412 1 chr2A.!!$F2 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 790 0.249699 CGCGTGGATGCCTATTGGTA 60.250 55.0 0.00 0.0 35.27 3.25 F
821 833 0.397941 CCAAAGTGTCTCCTGCCTGA 59.602 55.0 0.00 0.0 0.00 3.86 F
2280 2340 0.178900 ACTCCCTTCCCTTCGTTCCT 60.179 55.0 0.00 0.0 0.00 3.36 F
2862 2971 0.178973 TCCGAGAGTGGAGTTGTGGA 60.179 55.0 0.00 0.0 33.05 4.02 F
2863 2972 0.244994 CCGAGAGTGGAGTTGTGGAG 59.755 60.0 0.00 0.0 0.00 3.86 F
4740 5352 0.250858 TGTGTGCATCCACCTTCTGG 60.251 55.0 5.11 0.0 41.35 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2321 0.178900 AGGAACGAAGGGAAGGGAGT 60.179 55.000 0.00 0.0 0.00 3.85 R
2747 2856 0.953471 TGGAATTCCGAACACGCCTG 60.953 55.000 19.57 0.0 39.43 4.85 R
3278 3441 0.034756 TCCAACACAGTCACATCGGG 59.965 55.000 0.00 0.0 0.00 5.14 R
4753 5365 0.107081 AACCAACGTCGACCCATCAA 59.893 50.000 10.58 0.0 0.00 2.57 R
4912 5524 2.105128 GAGTCATCCACCCTCGCG 59.895 66.667 0.00 0.0 0.00 5.87 R
5979 6592 0.315568 GGCAGATGTCTACCCTAGCG 59.684 60.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
381 384 5.303165 TCGCTGAAGACGGAGAATACTATA 58.697 41.667 0.00 0.00 0.00 1.31
395 398 7.617723 GGAGAATACTATATGGACCATGAGTCT 59.382 40.741 21.19 14.83 45.54 3.24
551 554 8.522830 TGCATATATGTTCATGACGATCTTCTA 58.477 33.333 14.14 0.00 0.00 2.10
634 637 1.791204 CGTAGCGTCTATCTAGCACGA 59.209 52.381 11.02 0.00 37.48 4.35
655 658 6.587990 CACGAACATAAGAGATGACACTTCTT 59.412 38.462 8.02 8.02 0.00 2.52
778 790 0.249699 CGCGTGGATGCCTATTGGTA 60.250 55.000 0.00 0.00 35.27 3.25
808 820 1.152839 CACCAACCGGGACCAAAGT 60.153 57.895 6.32 0.00 41.15 2.66
821 833 0.397941 CCAAAGTGTCTCCTGCCTGA 59.602 55.000 0.00 0.00 0.00 3.86
879 891 2.420058 GTTCTGGATTGAACCGGGAT 57.580 50.000 6.32 0.00 40.10 3.85
887 899 2.517998 TTGAACCGGGATTAAAGGGG 57.482 50.000 6.32 0.00 0.00 4.79
892 904 1.641552 CCGGGATTAAAGGGGCAGGA 61.642 60.000 0.00 0.00 0.00 3.86
916 928 2.915657 AGTACCGACCCTTTAGTCCT 57.084 50.000 0.00 0.00 32.91 3.85
922 934 1.403780 CGACCCTTTAGTCCTGGTTCG 60.404 57.143 0.00 0.00 32.91 3.95
961 974 1.000060 CTTACGAACCGGGACAACAGA 60.000 52.381 6.32 0.00 0.00 3.41
966 979 2.052047 AACCGGGACAACAGACCCTG 62.052 60.000 6.32 0.00 43.57 4.45
968 981 1.301716 CGGGACAACAGACCCTGTG 60.302 63.158 0.00 0.00 44.62 3.66
1339 1361 4.988716 ACCACCTCGCCTCCGTGA 62.989 66.667 0.00 0.00 35.54 4.35
1518 1540 2.202756 GACAGGGACGACGGCATC 60.203 66.667 1.63 0.00 0.00 3.91
1629 1651 3.432588 CGTCTCGACCAGGCGTCT 61.433 66.667 0.00 0.00 45.76 4.18
1734 1786 3.390521 CTGCTGGACGTGCCCCTA 61.391 66.667 4.04 0.00 34.97 3.53
1995 2047 5.123186 TCTGCTCGGTTAAACATGTTTATGG 59.877 40.000 27.14 19.44 38.66 2.74
2124 2183 0.447801 ACGCGTGCCATTGATCTTTC 59.552 50.000 12.93 0.00 0.00 2.62
2205 2265 6.417635 CCAACGTTGCTGCCAATTTAATATAG 59.582 38.462 22.93 0.00 32.75 1.31
2206 2266 5.519722 ACGTTGCTGCCAATTTAATATAGC 58.480 37.500 0.00 0.00 32.75 2.97
2269 2329 7.171630 TCAAAGTTGAGATAGTACTCCCTTC 57.828 40.000 0.00 0.00 36.22 3.46
2270 2330 6.154706 TCAAAGTTGAGATAGTACTCCCTTCC 59.845 42.308 0.00 0.00 36.22 3.46
2271 2331 4.548669 AGTTGAGATAGTACTCCCTTCCC 58.451 47.826 0.00 0.00 36.22 3.97
2272 2332 4.233287 AGTTGAGATAGTACTCCCTTCCCT 59.767 45.833 0.00 0.00 36.22 4.20
2273 2333 4.901785 TGAGATAGTACTCCCTTCCCTT 57.098 45.455 0.00 0.00 36.22 3.95
2274 2334 4.805744 TGAGATAGTACTCCCTTCCCTTC 58.194 47.826 0.00 0.00 36.22 3.46
2275 2335 3.822167 GAGATAGTACTCCCTTCCCTTCG 59.178 52.174 0.00 0.00 0.00 3.79
2276 2336 3.204831 AGATAGTACTCCCTTCCCTTCGT 59.795 47.826 0.00 0.00 0.00 3.85
2277 2337 2.322339 AGTACTCCCTTCCCTTCGTT 57.678 50.000 0.00 0.00 0.00 3.85
2278 2338 2.177734 AGTACTCCCTTCCCTTCGTTC 58.822 52.381 0.00 0.00 0.00 3.95
2279 2339 1.206610 GTACTCCCTTCCCTTCGTTCC 59.793 57.143 0.00 0.00 0.00 3.62
2280 2340 0.178900 ACTCCCTTCCCTTCGTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
2281 2341 0.984995 CTCCCTTCCCTTCGTTCCTT 59.015 55.000 0.00 0.00 0.00 3.36
2282 2342 1.351350 CTCCCTTCCCTTCGTTCCTTT 59.649 52.381 0.00 0.00 0.00 3.11
2283 2343 1.778484 TCCCTTCCCTTCGTTCCTTTT 59.222 47.619 0.00 0.00 0.00 2.27
2284 2344 2.176148 TCCCTTCCCTTCGTTCCTTTTT 59.824 45.455 0.00 0.00 0.00 1.94
2285 2345 3.395273 TCCCTTCCCTTCGTTCCTTTTTA 59.605 43.478 0.00 0.00 0.00 1.52
2286 2346 3.756963 CCCTTCCCTTCGTTCCTTTTTAG 59.243 47.826 0.00 0.00 0.00 1.85
2287 2347 4.395625 CCTTCCCTTCGTTCCTTTTTAGT 58.604 43.478 0.00 0.00 0.00 2.24
2288 2348 4.825634 CCTTCCCTTCGTTCCTTTTTAGTT 59.174 41.667 0.00 0.00 0.00 2.24
2289 2349 5.048921 CCTTCCCTTCGTTCCTTTTTAGTTC 60.049 44.000 0.00 0.00 0.00 3.01
2290 2350 4.060205 TCCCTTCGTTCCTTTTTAGTTCG 58.940 43.478 0.00 0.00 0.00 3.95
2291 2351 3.364664 CCCTTCGTTCCTTTTTAGTTCGC 60.365 47.826 0.00 0.00 0.00 4.70
2292 2352 3.249080 CCTTCGTTCCTTTTTAGTTCGCA 59.751 43.478 0.00 0.00 0.00 5.10
2293 2353 4.083484 CCTTCGTTCCTTTTTAGTTCGCAT 60.083 41.667 0.00 0.00 0.00 4.73
2294 2354 5.121142 CCTTCGTTCCTTTTTAGTTCGCATA 59.879 40.000 0.00 0.00 0.00 3.14
2295 2355 6.183360 CCTTCGTTCCTTTTTAGTTCGCATAT 60.183 38.462 0.00 0.00 0.00 1.78
2296 2356 7.010738 CCTTCGTTCCTTTTTAGTTCGCATATA 59.989 37.037 0.00 0.00 0.00 0.86
2297 2357 7.830940 TCGTTCCTTTTTAGTTCGCATATAA 57.169 32.000 0.00 0.00 0.00 0.98
2298 2358 7.902032 TCGTTCCTTTTTAGTTCGCATATAAG 58.098 34.615 0.00 0.00 0.00 1.73
2299 2359 7.760794 TCGTTCCTTTTTAGTTCGCATATAAGA 59.239 33.333 0.00 0.00 0.00 2.10
2300 2360 8.548721 CGTTCCTTTTTAGTTCGCATATAAGAT 58.451 33.333 0.00 0.00 0.00 2.40
2308 2368 9.594478 TTTAGTTCGCATATAAGATTTGACTGA 57.406 29.630 0.00 0.00 0.00 3.41
2309 2369 9.594478 TTAGTTCGCATATAAGATTTGACTGAA 57.406 29.630 0.00 0.00 0.00 3.02
2310 2370 8.136057 AGTTCGCATATAAGATTTGACTGAAG 57.864 34.615 0.00 0.00 0.00 3.02
2311 2371 7.766278 AGTTCGCATATAAGATTTGACTGAAGT 59.234 33.333 0.00 0.00 0.00 3.01
2312 2372 7.700322 TCGCATATAAGATTTGACTGAAGTC 57.300 36.000 3.41 3.41 44.97 3.01
2326 2386 6.749923 GACTGAAGTCAAGCCTCATAAAAT 57.250 37.500 5.58 0.00 44.18 1.82
2327 2387 7.150783 GACTGAAGTCAAGCCTCATAAAATT 57.849 36.000 5.58 0.00 44.18 1.82
2328 2388 7.530426 ACTGAAGTCAAGCCTCATAAAATTT 57.470 32.000 0.00 0.00 0.00 1.82
2329 2389 8.635765 ACTGAAGTCAAGCCTCATAAAATTTA 57.364 30.769 0.00 0.00 0.00 1.40
2330 2390 9.077885 ACTGAAGTCAAGCCTCATAAAATTTAA 57.922 29.630 0.00 0.00 0.00 1.52
2331 2391 9.346725 CTGAAGTCAAGCCTCATAAAATTTAAC 57.653 33.333 0.00 0.00 0.00 2.01
2332 2392 8.303876 TGAAGTCAAGCCTCATAAAATTTAACC 58.696 33.333 0.00 0.00 0.00 2.85
2333 2393 7.775053 AGTCAAGCCTCATAAAATTTAACCA 57.225 32.000 0.00 0.00 0.00 3.67
2334 2394 8.189119 AGTCAAGCCTCATAAAATTTAACCAA 57.811 30.769 0.00 0.00 0.00 3.67
2335 2395 8.815912 AGTCAAGCCTCATAAAATTTAACCAAT 58.184 29.630 0.00 0.00 0.00 3.16
2336 2396 9.435688 GTCAAGCCTCATAAAATTTAACCAATT 57.564 29.630 0.00 0.00 36.57 2.32
2374 2434 9.234827 AGTATCAACATTCACAATCTGAAATCA 57.765 29.630 0.00 0.00 42.37 2.57
2375 2435 9.844790 GTATCAACATTCACAATCTGAAATCAA 57.155 29.630 0.00 0.00 42.37 2.57
2390 2450 9.770097 ATCTGAAATCAATATCAATAGACGTGT 57.230 29.630 0.00 0.00 0.00 4.49
2391 2451 9.249457 TCTGAAATCAATATCAATAGACGTGTC 57.751 33.333 0.00 0.00 0.00 3.67
2392 2452 8.940768 TGAAATCAATATCAATAGACGTGTCA 57.059 30.769 0.00 0.00 0.00 3.58
2393 2453 9.546428 TGAAATCAATATCAATAGACGTGTCAT 57.454 29.630 0.00 0.00 0.00 3.06
2394 2454 9.803130 GAAATCAATATCAATAGACGTGTCATG 57.197 33.333 0.00 0.00 0.00 3.07
2395 2455 9.546428 AAATCAATATCAATAGACGTGTCATGA 57.454 29.630 0.00 0.00 0.00 3.07
2396 2456 7.930513 TCAATATCAATAGACGTGTCATGAC 57.069 36.000 19.27 19.27 0.00 3.06
2397 2457 7.716612 TCAATATCAATAGACGTGTCATGACT 58.283 34.615 25.55 6.60 0.00 3.41
2398 2458 8.197439 TCAATATCAATAGACGTGTCATGACTT 58.803 33.333 25.55 10.77 0.00 3.01
2399 2459 9.463443 CAATATCAATAGACGTGTCATGACTTA 57.537 33.333 25.55 4.51 0.00 2.24
2402 2462 7.812309 TCAATAGACGTGTCATGACTTAAAG 57.188 36.000 25.55 11.13 0.00 1.85
2403 2463 7.375834 TCAATAGACGTGTCATGACTTAAAGT 58.624 34.615 25.55 14.15 0.00 2.66
2404 2464 7.870954 TCAATAGACGTGTCATGACTTAAAGTT 59.129 33.333 25.55 10.34 0.00 2.66
2405 2465 8.495949 CAATAGACGTGTCATGACTTAAAGTTT 58.504 33.333 25.55 11.95 0.00 2.66
2406 2466 6.526566 AGACGTGTCATGACTTAAAGTTTC 57.473 37.500 25.55 10.82 0.00 2.78
2407 2467 6.046593 AGACGTGTCATGACTTAAAGTTTCA 58.953 36.000 25.55 0.00 0.00 2.69
2408 2468 6.706270 AGACGTGTCATGACTTAAAGTTTCAT 59.294 34.615 25.55 1.50 0.00 2.57
2409 2469 7.870954 AGACGTGTCATGACTTAAAGTTTCATA 59.129 33.333 25.55 0.00 0.00 2.15
2410 2470 8.547967 ACGTGTCATGACTTAAAGTTTCATAT 57.452 30.769 25.55 0.00 0.00 1.78
2411 2471 8.999431 ACGTGTCATGACTTAAAGTTTCATATT 58.001 29.630 25.55 0.00 0.00 1.28
2412 2472 9.265938 CGTGTCATGACTTAAAGTTTCATATTG 57.734 33.333 25.55 0.00 0.00 1.90
2430 2490 8.916628 TCATATTGTATAACTTTAGCATGGCA 57.083 30.769 0.00 0.00 0.00 4.92
2431 2491 9.348476 TCATATTGTATAACTTTAGCATGGCAA 57.652 29.630 0.00 0.00 0.00 4.52
2432 2492 9.964303 CATATTGTATAACTTTAGCATGGCAAA 57.036 29.630 0.00 0.00 0.00 3.68
2434 2494 8.876275 ATTGTATAACTTTAGCATGGCAAATG 57.124 30.769 0.00 0.00 0.00 2.32
2435 2495 7.403312 TGTATAACTTTAGCATGGCAAATGT 57.597 32.000 0.00 0.00 0.00 2.71
2436 2496 7.835822 TGTATAACTTTAGCATGGCAAATGTT 58.164 30.769 0.00 0.00 0.00 2.71
2437 2497 7.758980 TGTATAACTTTAGCATGGCAAATGTTG 59.241 33.333 9.77 0.00 0.00 3.33
2438 2498 4.870123 ACTTTAGCATGGCAAATGTTGA 57.130 36.364 0.00 0.00 0.00 3.18
2439 2499 5.410355 ACTTTAGCATGGCAAATGTTGAT 57.590 34.783 0.00 0.00 0.00 2.57
2440 2500 6.528537 ACTTTAGCATGGCAAATGTTGATA 57.471 33.333 0.00 0.00 0.00 2.15
2441 2501 7.116075 ACTTTAGCATGGCAAATGTTGATAT 57.884 32.000 0.00 0.00 0.00 1.63
2442 2502 7.558604 ACTTTAGCATGGCAAATGTTGATATT 58.441 30.769 0.00 0.00 0.00 1.28
2443 2503 8.042515 ACTTTAGCATGGCAAATGTTGATATTT 58.957 29.630 0.00 0.00 0.00 1.40
2444 2504 8.789825 TTTAGCATGGCAAATGTTGATATTTT 57.210 26.923 0.00 0.00 0.00 1.82
2445 2505 8.789825 TTAGCATGGCAAATGTTGATATTTTT 57.210 26.923 0.00 0.00 0.00 1.94
2472 2532 9.438228 TCATATAAATACGGTCAAACTTTGTGA 57.562 29.630 1.44 0.00 0.00 3.58
2519 2579 8.943909 AATATACAGAGTAAAAAGAACCGGAG 57.056 34.615 9.46 0.00 0.00 4.63
2539 2599 4.216687 GGAGGGAGTACATGAACTATCTCG 59.783 50.000 0.00 0.00 33.18 4.04
2561 2621 9.325198 TCTCGATAAACAAGGTAATACGTACTA 57.675 33.333 0.00 0.00 32.80 1.82
2595 2655 8.988064 ATATATAACGCACAGAAATGGAGTAG 57.012 34.615 0.00 0.00 0.00 2.57
2598 2658 3.846360 ACGCACAGAAATGGAGTAGTAC 58.154 45.455 0.00 0.00 0.00 2.73
2599 2659 3.510360 ACGCACAGAAATGGAGTAGTACT 59.490 43.478 1.37 1.37 0.00 2.73
2600 2660 4.703575 ACGCACAGAAATGGAGTAGTACTA 59.296 41.667 1.88 0.00 0.00 1.82
2601 2661 5.035443 CGCACAGAAATGGAGTAGTACTAC 58.965 45.833 23.03 23.03 36.35 2.73
2603 2663 6.037940 CGCACAGAAATGGAGTAGTACTACTA 59.962 42.308 30.80 19.32 45.63 1.82
2604 2664 7.255173 CGCACAGAAATGGAGTAGTACTACTAT 60.255 40.741 30.80 20.54 45.63 2.12
2605 2665 9.064706 GCACAGAAATGGAGTAGTACTACTATA 57.935 37.037 30.80 23.03 45.63 1.31
2633 2693 3.811083 TCGGTAAGCAAACTCCAAAGAA 58.189 40.909 0.00 0.00 0.00 2.52
2670 2730 1.184970 ATCCCCAACAAACCGCCAAG 61.185 55.000 0.00 0.00 0.00 3.61
2676 2736 0.820871 AACAAACCGCCAAGAAAGCA 59.179 45.000 0.00 0.00 0.00 3.91
2677 2737 1.039856 ACAAACCGCCAAGAAAGCAT 58.960 45.000 0.00 0.00 0.00 3.79
2724 2833 3.011821 ACCAGTATCTCCTCTCCACTTGA 59.988 47.826 0.00 0.00 0.00 3.02
2745 2854 8.152246 ACTTGAGATCTACTAATAGTCGCTACT 58.848 37.037 0.00 0.00 39.91 2.57
2746 2855 9.642327 CTTGAGATCTACTAATAGTCGCTACTA 57.358 37.037 0.00 0.00 42.35 1.82
2747 2856 8.984891 TGAGATCTACTAATAGTCGCTACTAC 57.015 38.462 0.00 0.00 40.98 2.73
2748 2857 8.583296 TGAGATCTACTAATAGTCGCTACTACA 58.417 37.037 0.00 0.00 40.98 2.74
2749 2858 8.991243 AGATCTACTAATAGTCGCTACTACAG 57.009 38.462 0.00 4.13 40.98 2.74
2750 2859 8.036575 AGATCTACTAATAGTCGCTACTACAGG 58.963 40.741 0.00 0.00 40.98 4.00
2751 2860 5.931146 TCTACTAATAGTCGCTACTACAGGC 59.069 44.000 0.00 0.00 40.98 4.85
2756 2865 4.883026 CGCTACTACAGGCGTGTT 57.117 55.556 18.35 2.96 45.34 3.32
2757 2866 2.650163 CGCTACTACAGGCGTGTTC 58.350 57.895 18.35 1.96 45.34 3.18
2758 2867 1.132199 CGCTACTACAGGCGTGTTCG 61.132 60.000 18.35 11.62 45.34 3.95
2759 2868 0.801067 GCTACTACAGGCGTGTTCGG 60.801 60.000 18.35 10.71 38.19 4.30
2760 2869 0.806868 CTACTACAGGCGTGTTCGGA 59.193 55.000 18.35 5.38 38.19 4.55
2761 2870 1.200716 CTACTACAGGCGTGTTCGGAA 59.799 52.381 18.35 0.00 38.19 4.30
2762 2871 0.606604 ACTACAGGCGTGTTCGGAAT 59.393 50.000 18.35 0.00 38.19 3.01
2763 2872 1.001633 ACTACAGGCGTGTTCGGAATT 59.998 47.619 18.35 0.00 38.19 2.17
2764 2873 1.659098 CTACAGGCGTGTTCGGAATTC 59.341 52.381 18.35 0.00 38.19 2.17
2765 2874 0.953960 ACAGGCGTGTTCGGAATTCC 60.954 55.000 15.01 15.01 37.56 3.01
2766 2875 0.953471 CAGGCGTGTTCGGAATTCCA 60.953 55.000 24.09 8.75 37.56 3.53
2767 2876 0.953960 AGGCGTGTTCGGAATTCCAC 60.954 55.000 24.09 15.59 37.56 4.02
2768 2877 1.500396 GCGTGTTCGGAATTCCACC 59.500 57.895 24.09 11.12 37.56 4.61
2769 2878 1.231958 GCGTGTTCGGAATTCCACCA 61.232 55.000 24.09 13.51 37.56 4.17
2770 2879 1.231221 CGTGTTCGGAATTCCACCAA 58.769 50.000 24.09 10.45 35.14 3.67
2771 2880 1.069500 CGTGTTCGGAATTCCACCAAC 60.069 52.381 24.09 20.57 35.14 3.77
2772 2881 2.227194 GTGTTCGGAATTCCACCAACT 58.773 47.619 24.09 0.00 35.14 3.16
2773 2882 2.225727 GTGTTCGGAATTCCACCAACTC 59.774 50.000 24.09 17.56 35.14 3.01
2774 2883 1.810755 GTTCGGAATTCCACCAACTCC 59.189 52.381 24.09 0.00 35.14 3.85
2775 2884 1.060729 TCGGAATTCCACCAACTCCA 58.939 50.000 24.09 0.00 35.14 3.86
2776 2885 1.165270 CGGAATTCCACCAACTCCAC 58.835 55.000 24.09 0.00 35.14 4.02
2777 2886 1.165270 GGAATTCCACCAACTCCACG 58.835 55.000 20.04 0.00 35.64 4.94
2778 2887 1.271163 GGAATTCCACCAACTCCACGA 60.271 52.381 20.04 0.00 35.64 4.35
2779 2888 2.500229 GAATTCCACCAACTCCACGAA 58.500 47.619 0.00 0.00 0.00 3.85
2780 2889 2.649531 ATTCCACCAACTCCACGAAA 57.350 45.000 0.00 0.00 0.00 3.46
2781 2890 2.649531 TTCCACCAACTCCACGAAAT 57.350 45.000 0.00 0.00 0.00 2.17
2782 2891 2.649531 TCCACCAACTCCACGAAATT 57.350 45.000 0.00 0.00 0.00 1.82
2783 2892 2.500229 TCCACCAACTCCACGAAATTC 58.500 47.619 0.00 0.00 0.00 2.17
2784 2893 1.539827 CCACCAACTCCACGAAATTCC 59.460 52.381 0.00 0.00 0.00 3.01
2785 2894 2.226330 CACCAACTCCACGAAATTCCA 58.774 47.619 0.00 0.00 0.00 3.53
2786 2895 2.226437 CACCAACTCCACGAAATTCCAG 59.774 50.000 0.00 0.00 0.00 3.86
2787 2896 1.812571 CCAACTCCACGAAATTCCAGG 59.187 52.381 0.00 0.00 0.00 4.45
2788 2897 2.552155 CCAACTCCACGAAATTCCAGGA 60.552 50.000 0.00 1.88 0.00 3.86
2790 2899 2.770164 CTCCACGAAATTCCAGGAGT 57.230 50.000 15.97 0.00 40.71 3.85
2791 2900 3.059352 CTCCACGAAATTCCAGGAGTT 57.941 47.619 15.97 0.00 40.71 3.01
2792 2901 4.202245 CTCCACGAAATTCCAGGAGTTA 57.798 45.455 15.97 0.00 40.71 2.24
2793 2902 4.770795 CTCCACGAAATTCCAGGAGTTAT 58.229 43.478 15.97 0.00 40.71 1.89
2794 2903 4.513442 TCCACGAAATTCCAGGAGTTATG 58.487 43.478 0.00 0.00 0.00 1.90
2795 2904 3.627577 CCACGAAATTCCAGGAGTTATGG 59.372 47.826 0.00 3.33 39.33 2.74
2796 2905 4.513442 CACGAAATTCCAGGAGTTATGGA 58.487 43.478 0.00 0.00 45.15 3.41
2805 2914 6.945636 TCCAGGAGTTATGGAGTTAGAAAA 57.054 37.500 0.00 0.00 41.96 2.29
2806 2915 7.324388 TCCAGGAGTTATGGAGTTAGAAAAA 57.676 36.000 0.00 0.00 41.96 1.94
2827 2936 4.660789 AAGCTGCTTCACAGTTTTCAAT 57.339 36.364 9.53 0.00 46.49 2.57
2828 2937 5.014808 AAGCTGCTTCACAGTTTTCAATT 57.985 34.783 9.53 0.00 46.49 2.32
2829 2938 6.147864 AAGCTGCTTCACAGTTTTCAATTA 57.852 33.333 9.53 0.00 46.49 1.40
2830 2939 5.979517 AAGCTGCTTCACAGTTTTCAATTAC 59.020 36.000 9.53 0.00 46.49 1.89
2831 2940 6.405731 AAGCTGCTTCACAGTTTTCAATTACA 60.406 34.615 9.53 0.00 46.49 2.41
2832 2941 7.844355 AAGCTGCTTCACAGTTTTCAATTACAA 60.844 33.333 9.53 0.00 46.49 2.41
2833 2942 7.153478 CTGCTTCACAGTTTTCAATTACAAC 57.847 36.000 0.00 0.00 41.86 3.32
2834 2943 6.862209 TGCTTCACAGTTTTCAATTACAACT 58.138 32.000 0.00 0.00 0.00 3.16
2835 2944 6.972328 TGCTTCACAGTTTTCAATTACAACTC 59.028 34.615 0.00 0.00 0.00 3.01
2836 2945 6.417930 GCTTCACAGTTTTCAATTACAACTCC 59.582 38.462 0.00 0.00 0.00 3.85
2837 2946 7.397892 TTCACAGTTTTCAATTACAACTCCA 57.602 32.000 0.00 0.00 0.00 3.86
2838 2947 6.791303 TCACAGTTTTCAATTACAACTCCAC 58.209 36.000 0.00 0.00 0.00 4.02
2839 2948 5.977129 CACAGTTTTCAATTACAACTCCACC 59.023 40.000 0.00 0.00 0.00 4.61
2840 2949 5.212194 CAGTTTTCAATTACAACTCCACCG 58.788 41.667 0.00 0.00 0.00 4.94
2841 2950 5.008217 CAGTTTTCAATTACAACTCCACCGA 59.992 40.000 0.00 0.00 0.00 4.69
2842 2951 5.008316 AGTTTTCAATTACAACTCCACCGAC 59.992 40.000 0.00 0.00 0.00 4.79
2843 2952 4.345859 TTCAATTACAACTCCACCGACT 57.654 40.909 0.00 0.00 0.00 4.18
2844 2953 3.921677 TCAATTACAACTCCACCGACTC 58.078 45.455 0.00 0.00 0.00 3.36
2845 2954 3.000727 CAATTACAACTCCACCGACTCC 58.999 50.000 0.00 0.00 0.00 3.85
2846 2955 0.599558 TTACAACTCCACCGACTCCG 59.400 55.000 0.00 0.00 0.00 4.63
2847 2956 0.250858 TACAACTCCACCGACTCCGA 60.251 55.000 0.00 0.00 38.22 4.55
2848 2957 1.213013 CAACTCCACCGACTCCGAG 59.787 63.158 0.00 0.00 38.22 4.63
2849 2958 1.074423 AACTCCACCGACTCCGAGA 59.926 57.895 1.33 0.00 38.22 4.04
2850 2959 0.961358 AACTCCACCGACTCCGAGAG 60.961 60.000 1.33 0.00 38.22 3.20
2851 2960 1.377463 CTCCACCGACTCCGAGAGT 60.377 63.158 1.33 6.29 46.42 3.24
2852 2961 1.649390 CTCCACCGACTCCGAGAGTG 61.649 65.000 10.72 6.69 43.53 3.51
2853 2962 2.701780 CCACCGACTCCGAGAGTGG 61.702 68.421 16.96 16.96 43.53 4.00
2854 2963 1.674651 CACCGACTCCGAGAGTGGA 60.675 63.158 19.26 0.00 43.53 4.02
2861 2970 2.351777 TCCGAGAGTGGAGTTGTGG 58.648 57.895 0.00 0.00 33.05 4.17
2862 2971 0.178973 TCCGAGAGTGGAGTTGTGGA 60.179 55.000 0.00 0.00 33.05 4.02
2863 2972 0.244994 CCGAGAGTGGAGTTGTGGAG 59.755 60.000 0.00 0.00 0.00 3.86
2864 2973 0.962489 CGAGAGTGGAGTTGTGGAGT 59.038 55.000 0.00 0.00 0.00 3.85
2865 2974 2.160205 CGAGAGTGGAGTTGTGGAGTA 58.840 52.381 0.00 0.00 0.00 2.59
2866 2975 2.162608 CGAGAGTGGAGTTGTGGAGTAG 59.837 54.545 0.00 0.00 0.00 2.57
2867 2976 3.422796 GAGAGTGGAGTTGTGGAGTAGA 58.577 50.000 0.00 0.00 0.00 2.59
2868 2977 3.426615 AGAGTGGAGTTGTGGAGTAGAG 58.573 50.000 0.00 0.00 0.00 2.43
2869 2978 2.494073 GAGTGGAGTTGTGGAGTAGAGG 59.506 54.545 0.00 0.00 0.00 3.69
2870 2979 1.066787 GTGGAGTTGTGGAGTAGAGGC 60.067 57.143 0.00 0.00 0.00 4.70
2871 2980 1.203187 TGGAGTTGTGGAGTAGAGGCT 60.203 52.381 0.00 0.00 0.00 4.58
2872 2981 1.903183 GGAGTTGTGGAGTAGAGGCTT 59.097 52.381 0.00 0.00 0.00 4.35
2873 2982 2.303311 GGAGTTGTGGAGTAGAGGCTTT 59.697 50.000 0.00 0.00 0.00 3.51
2874 2983 3.591023 GAGTTGTGGAGTAGAGGCTTTC 58.409 50.000 0.00 0.00 0.00 2.62
2875 2984 2.303311 AGTTGTGGAGTAGAGGCTTTCC 59.697 50.000 0.00 0.00 0.00 3.13
2876 2985 0.895530 TGTGGAGTAGAGGCTTTCCG 59.104 55.000 0.00 0.00 37.47 4.30
2877 2986 1.183549 GTGGAGTAGAGGCTTTCCGA 58.816 55.000 0.00 0.00 37.47 4.55
2878 2987 1.549170 GTGGAGTAGAGGCTTTCCGAA 59.451 52.381 0.00 0.00 37.47 4.30
2879 2988 1.549170 TGGAGTAGAGGCTTTCCGAAC 59.451 52.381 0.00 0.00 37.47 3.95
2880 2989 1.826096 GGAGTAGAGGCTTTCCGAACT 59.174 52.381 0.00 0.00 37.47 3.01
2881 2990 2.417515 GGAGTAGAGGCTTTCCGAACTG 60.418 54.545 0.00 0.00 37.47 3.16
2882 2991 1.550976 AGTAGAGGCTTTCCGAACTGG 59.449 52.381 0.00 0.00 37.47 4.00
2883 2992 0.902531 TAGAGGCTTTCCGAACTGGG 59.097 55.000 0.00 0.00 38.76 4.45
2884 2993 2.034221 AGGCTTTCCGAACTGGGC 59.966 61.111 0.00 0.00 38.76 5.36
2885 2994 3.062466 GGCTTTCCGAACTGGGCC 61.062 66.667 0.00 0.00 38.76 5.80
2886 2995 3.431725 GCTTTCCGAACTGGGCCG 61.432 66.667 0.00 0.00 38.76 6.13
2887 2996 3.431725 CTTTCCGAACTGGGCCGC 61.432 66.667 0.00 0.00 38.76 6.53
2945 3083 8.617290 CCAATAATGGGTAGTAATACCAGAAC 57.383 38.462 20.30 4.27 43.51 3.01
2954 3092 7.991460 GGGTAGTAATACCAGAACTTGCTAATT 59.009 37.037 20.30 0.00 41.83 1.40
3032 3184 3.754965 TGCTAGTCAATTTGTTGCTCCT 58.245 40.909 0.00 0.00 0.00 3.69
3033 3185 3.753272 TGCTAGTCAATTTGTTGCTCCTC 59.247 43.478 0.00 0.00 0.00 3.71
3097 3256 0.593618 GCTGATGCCTGATGCTGATG 59.406 55.000 0.00 0.00 42.00 3.07
3174 3336 1.155155 TTCCCTTTTCCACCAGCCC 59.845 57.895 0.00 0.00 0.00 5.19
3278 3441 1.867233 CATGGGAGCTGTATACGTTGC 59.133 52.381 0.00 3.05 0.00 4.17
3325 3488 1.456296 TGCTACGCTCGAGGTAAAGA 58.544 50.000 15.58 0.00 0.00 2.52
3420 3583 6.852664 TCATACGCATATGATACAGTACAGG 58.147 40.000 6.97 0.00 41.91 4.00
3421 3584 6.657541 TCATACGCATATGATACAGTACAGGA 59.342 38.462 6.97 0.00 41.91 3.86
3448 3611 2.203800 TCATTCGGCATCAGTCGTAC 57.796 50.000 0.00 0.00 44.74 3.67
3451 3614 3.003378 TCATTCGGCATCAGTCGTACTAG 59.997 47.826 0.00 0.00 44.74 2.57
3565 3844 4.754114 CCACTAGCATCTTTAGATCCAAGC 59.246 45.833 0.00 0.00 31.21 4.01
4112 4400 3.346315 TGTACCATCTCCAACAATGCAG 58.654 45.455 0.00 0.00 0.00 4.41
4183 4471 1.467035 CGCAGTGGTACTTCGTAGGTC 60.467 57.143 0.00 0.00 30.48 3.85
4184 4472 1.542915 GCAGTGGTACTTCGTAGGTCA 59.457 52.381 0.00 0.00 0.00 4.02
4185 4473 2.670509 GCAGTGGTACTTCGTAGGTCAC 60.671 54.545 0.00 0.00 0.00 3.67
4210 4498 0.877071 AAATCACGTGAGCTGCTTGG 59.123 50.000 24.41 0.00 0.00 3.61
4211 4499 1.580845 AATCACGTGAGCTGCTTGGC 61.581 55.000 24.41 0.00 0.00 4.52
4212 4500 4.081030 CACGTGAGCTGCTTGGCG 62.081 66.667 10.90 11.36 37.29 5.69
4213 4501 4.299547 ACGTGAGCTGCTTGGCGA 62.300 61.111 21.50 0.00 37.29 5.54
4241 4529 6.444633 AGAGCTGAGTTTCACAATGATTTTG 58.555 36.000 0.00 0.00 0.00 2.44
4242 4530 4.986659 AGCTGAGTTTCACAATGATTTTGC 59.013 37.500 0.00 0.00 0.00 3.68
4243 4531 4.746115 GCTGAGTTTCACAATGATTTTGCA 59.254 37.500 0.00 0.00 0.00 4.08
4245 4533 6.073440 GCTGAGTTTCACAATGATTTTGCATT 60.073 34.615 0.00 0.00 38.96 3.56
4246 4534 7.116662 GCTGAGTTTCACAATGATTTTGCATTA 59.883 33.333 0.00 0.00 36.39 1.90
4247 4535 9.146984 CTGAGTTTCACAATGATTTTGCATTAT 57.853 29.630 0.00 0.00 36.39 1.28
4248 4536 9.142515 TGAGTTTCACAATGATTTTGCATTATC 57.857 29.630 0.00 0.00 36.39 1.75
4249 4537 8.483307 AGTTTCACAATGATTTTGCATTATCC 57.517 30.769 6.21 0.00 36.39 2.59
4250 4538 7.276218 AGTTTCACAATGATTTTGCATTATCCG 59.724 33.333 6.21 0.00 36.39 4.18
4251 4539 6.206395 TCACAATGATTTTGCATTATCCGT 57.794 33.333 6.21 0.18 36.39 4.69
4252 4540 6.264832 TCACAATGATTTTGCATTATCCGTC 58.735 36.000 6.21 0.00 36.39 4.79
4253 4541 6.095300 TCACAATGATTTTGCATTATCCGTCT 59.905 34.615 6.21 0.00 36.39 4.18
4254 4542 6.197655 CACAATGATTTTGCATTATCCGTCTG 59.802 38.462 6.21 2.41 36.39 3.51
4255 4543 6.127647 ACAATGATTTTGCATTATCCGTCTGT 60.128 34.615 6.21 2.86 36.39 3.41
4276 4564 2.022195 CCTTGCACATGGATGAAGAGG 58.978 52.381 0.00 0.00 0.00 3.69
4341 4953 0.734889 GTGCCGTTGATTCTGATGGG 59.265 55.000 0.00 0.00 0.00 4.00
4347 4959 2.416547 CGTTGATTCTGATGGGTGTGAC 59.583 50.000 0.00 0.00 0.00 3.67
4355 4967 1.227823 ATGGGTGTGACACGTGTGG 60.228 57.895 28.82 0.00 34.83 4.17
4708 5320 0.681564 CTCGGCTCCAGGTCTGTACT 60.682 60.000 0.00 0.00 0.00 2.73
4709 5321 0.965866 TCGGCTCCAGGTCTGTACTG 60.966 60.000 0.00 0.00 35.74 2.74
4710 5322 0.965866 CGGCTCCAGGTCTGTACTGA 60.966 60.000 0.00 0.00 38.20 3.41
4711 5323 0.533032 GGCTCCAGGTCTGTACTGAC 59.467 60.000 21.14 21.14 38.20 3.51
4712 5324 1.551452 GCTCCAGGTCTGTACTGACT 58.449 55.000 26.08 13.49 38.20 3.41
4713 5325 1.203523 GCTCCAGGTCTGTACTGACTG 59.796 57.143 26.08 21.25 38.20 3.51
4714 5326 2.520069 CTCCAGGTCTGTACTGACTGT 58.480 52.381 26.08 14.81 38.20 3.55
4715 5327 3.687125 CTCCAGGTCTGTACTGACTGTA 58.313 50.000 26.08 12.49 38.20 2.74
4732 5344 3.415457 TGTACATTCTGTGTGCATCCA 57.585 42.857 0.00 0.00 46.51 3.41
4734 5346 1.538047 ACATTCTGTGTGCATCCACC 58.462 50.000 5.11 0.00 40.28 4.61
4736 5348 2.165167 CATTCTGTGTGCATCCACCTT 58.835 47.619 5.11 0.00 41.35 3.50
4740 5352 0.250858 TGTGTGCATCCACCTTCTGG 60.251 55.000 5.11 0.00 41.35 3.86
4752 5364 2.671396 CACCTTCTGGACGGTTAATTCG 59.329 50.000 0.00 0.60 37.04 3.34
4753 5365 2.301009 ACCTTCTGGACGGTTAATTCGT 59.699 45.455 6.54 6.54 44.03 3.85
5082 5694 2.000447 GGTACCAGCAGAAAAGCTACG 59.000 52.381 7.15 0.00 44.54 3.51
5118 5730 3.495193 CATCTGGTCAAGCGAAAATGTG 58.505 45.455 0.00 0.00 0.00 3.21
5177 5789 3.527533 ACACTTGTGTCGTTTTAGCTCA 58.472 40.909 0.00 0.00 0.00 4.26
5197 5809 5.643777 GCTCAATCCTAGCTGTGAAACTAAA 59.356 40.000 0.00 0.00 38.04 1.85
5225 5837 0.616395 TGCCATCAGAGGGGTCGTTA 60.616 55.000 2.61 0.00 0.00 3.18
5226 5838 0.759346 GCCATCAGAGGGGTCGTTAT 59.241 55.000 2.61 0.00 0.00 1.89
5228 5840 2.367567 GCCATCAGAGGGGTCGTTATAA 59.632 50.000 2.61 0.00 0.00 0.98
5231 5843 4.040461 CCATCAGAGGGGTCGTTATAACAT 59.960 45.833 15.67 0.00 0.00 2.71
5245 5857 8.321716 GTCGTTATAACATTCTTGCTAAGTCTG 58.678 37.037 15.67 0.00 0.00 3.51
5246 5858 7.491372 TCGTTATAACATTCTTGCTAAGTCTGG 59.509 37.037 15.67 0.00 0.00 3.86
5247 5859 7.491372 CGTTATAACATTCTTGCTAAGTCTGGA 59.509 37.037 15.67 0.00 0.00 3.86
5248 5860 9.331282 GTTATAACATTCTTGCTAAGTCTGGAT 57.669 33.333 10.81 0.00 0.00 3.41
5249 5861 9.547753 TTATAACATTCTTGCTAAGTCTGGATC 57.452 33.333 0.00 0.00 0.00 3.36
5253 5865 4.313277 TCTTGCTAAGTCTGGATCGATG 57.687 45.455 0.54 0.00 0.00 3.84
5260 5872 7.539436 TGCTAAGTCTGGATCGATGTTATATC 58.461 38.462 0.54 0.00 0.00 1.63
5266 5878 5.475564 TCTGGATCGATGTTATATCCGTGAA 59.524 40.000 0.54 0.00 41.81 3.18
5269 5881 6.811665 TGGATCGATGTTATATCCGTGAAATC 59.188 38.462 0.54 0.00 41.81 2.17
5273 5885 8.738199 TCGATGTTATATCCGTGAAATCTTAC 57.262 34.615 0.00 0.00 0.00 2.34
5359 5971 8.567948 GTTGAGTGAGAATTGGTTAAATCTCAA 58.432 33.333 8.81 0.00 35.78 3.02
5385 5997 3.594134 CTGAGATCCAGTCACACCTTTC 58.406 50.000 3.72 0.00 38.10 2.62
5388 6000 3.769844 GAGATCCAGTCACACCTTTCCTA 59.230 47.826 0.00 0.00 0.00 2.94
5421 6033 5.774690 TCTTTCAACAATCAGGCTTTGGTAT 59.225 36.000 4.12 0.00 0.00 2.73
5426 6038 6.705381 TCAACAATCAGGCTTTGGTATTTTTG 59.295 34.615 4.12 0.00 0.00 2.44
5427 6039 6.173427 ACAATCAGGCTTTGGTATTTTTGT 57.827 33.333 4.12 0.00 0.00 2.83
5428 6040 6.591001 ACAATCAGGCTTTGGTATTTTTGTT 58.409 32.000 4.12 0.00 0.00 2.83
5429 6041 6.705825 ACAATCAGGCTTTGGTATTTTTGTTC 59.294 34.615 4.12 0.00 0.00 3.18
5443 6055 0.394938 TTGTTCCTGCTCGGCTAACA 59.605 50.000 0.00 0.00 0.00 2.41
5453 6065 3.312421 TGCTCGGCTAACATATGCTTTTC 59.688 43.478 1.58 0.00 0.00 2.29
5459 6071 5.177696 CGGCTAACATATGCTTTTCTAGGAC 59.822 44.000 1.58 0.00 0.00 3.85
5462 6074 4.408182 ACATATGCTTTTCTAGGACGCT 57.592 40.909 1.58 0.00 0.00 5.07
5464 6076 6.102897 ACATATGCTTTTCTAGGACGCTAT 57.897 37.500 1.58 0.00 0.00 2.97
5465 6077 6.159988 ACATATGCTTTTCTAGGACGCTATC 58.840 40.000 1.58 0.00 0.00 2.08
5467 6079 4.737855 TGCTTTTCTAGGACGCTATCTT 57.262 40.909 0.00 0.00 0.00 2.40
5468 6080 5.847111 TGCTTTTCTAGGACGCTATCTTA 57.153 39.130 0.00 0.00 0.00 2.10
5471 6083 6.183360 TGCTTTTCTAGGACGCTATCTTACAT 60.183 38.462 0.00 0.00 0.00 2.29
5472 6084 6.363896 GCTTTTCTAGGACGCTATCTTACATC 59.636 42.308 0.00 0.00 0.00 3.06
5484 6096 5.105554 GCTATCTTACATCCAGTCATCCGAT 60.106 44.000 0.00 0.00 0.00 4.18
5596 6209 9.988815 AGTAGAGATTAAACTAATCATGCGAAT 57.011 29.630 8.66 0.00 45.41 3.34
5615 6228 6.074005 GCGAATTAGCATAGCAGATAAACAC 58.926 40.000 5.59 0.00 37.05 3.32
5623 6236 6.544931 AGCATAGCAGATAAACACATCACATT 59.455 34.615 0.00 0.00 0.00 2.71
5631 6244 6.835488 AGATAAACACATCACATTTAGGGCAT 59.165 34.615 0.00 0.00 0.00 4.40
5837 6450 1.256812 CAAAAACCTGATCGCCCCTT 58.743 50.000 0.00 0.00 0.00 3.95
5856 6469 1.548081 TTCCCGTACAGGATCACGAA 58.452 50.000 0.00 0.00 45.00 3.85
5869 6482 3.562232 ACGAAAGGCGGGGTTCCA 61.562 61.111 0.00 0.00 46.49 3.53
5889 6502 1.846712 GAGGCCTGCTGTCCCTTCTT 61.847 60.000 12.00 0.00 0.00 2.52
5992 6605 2.831742 CGGCCGCTAGGGTAGACA 60.832 66.667 14.67 0.00 38.44 3.41
6311 6935 7.285858 GGTAGAAGAGCTCACCTTATAAAGAGA 59.714 40.741 17.77 0.00 0.00 3.10
6354 6978 2.307980 GGGGTGGGACTAAACTTTAGCT 59.692 50.000 8.26 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
381 384 5.901413 AATCATACAGACTCATGGTCCAT 57.099 39.130 0.00 0.00 45.54 3.41
623 626 7.228706 TGTCATCTCTTATGTTCGTGCTAGATA 59.771 37.037 0.00 0.00 0.00 1.98
627 630 5.125578 AGTGTCATCTCTTATGTTCGTGCTA 59.874 40.000 0.00 0.00 0.00 3.49
745 757 1.067693 CACGCGTCAGCATTTCTGTA 58.932 50.000 9.86 0.00 45.49 2.74
808 820 1.986757 GGAGCTCAGGCAGGAGACA 60.987 63.158 17.19 0.00 41.70 3.41
879 891 4.080186 GGTACTAATGTCCTGCCCCTTTAA 60.080 45.833 0.00 0.00 0.00 1.52
887 899 1.202498 GGGTCGGTACTAATGTCCTGC 60.202 57.143 0.00 0.00 0.00 4.85
892 904 4.403752 GGACTAAAGGGTCGGTACTAATGT 59.596 45.833 0.00 0.00 37.12 2.71
922 934 2.280552 GGCCTTTTTCCCGGTTCCC 61.281 63.158 0.00 0.00 0.00 3.97
961 974 3.181434 TGCCATAAAACTTCTCACAGGGT 60.181 43.478 0.00 0.00 0.00 4.34
966 979 4.036262 TGTGTGTGCCATAAAACTTCTCAC 59.964 41.667 0.00 0.00 0.00 3.51
967 980 4.203226 TGTGTGTGCCATAAAACTTCTCA 58.797 39.130 0.00 0.00 0.00 3.27
968 981 4.829064 TGTGTGTGCCATAAAACTTCTC 57.171 40.909 0.00 0.00 0.00 2.87
1518 1540 4.421479 AGGAGGAAGTCGCACGCG 62.421 66.667 3.53 3.53 41.35 6.01
1582 1604 2.683933 GGCCTCGAGGTCTCCCAA 60.684 66.667 31.43 0.00 36.72 4.12
1707 1729 4.400109 TCCAGCAGCGTCGTCGTC 62.400 66.667 3.66 0.00 39.49 4.20
1734 1786 2.356313 CGCACCAGACGAAGCACT 60.356 61.111 0.00 0.00 0.00 4.40
1821 1873 2.821366 TCGGAGAGGTACGCGTCC 60.821 66.667 18.63 17.45 0.00 4.79
1949 2001 1.087771 CGCCGCACTTACCTTAAGGG 61.088 60.000 25.31 10.36 42.11 3.95
1995 2047 6.089150 GGTCGAGATTAACTAACAAGACACAC 59.911 42.308 0.00 0.00 0.00 3.82
2124 2183 4.488126 TTCCATTTCTGCTGAAAGTTCG 57.512 40.909 21.19 11.10 44.25 3.95
2180 2240 2.430546 TAAATTGGCAGCAACGTTGG 57.569 45.000 28.33 14.58 0.00 3.77
2206 2266 2.236223 ATCGAGGGAGTGCAGTGCTG 62.236 60.000 17.60 3.83 0.00 4.41
2258 2318 2.177734 GAACGAAGGGAAGGGAGTACT 58.822 52.381 0.00 0.00 0.00 2.73
2259 2319 1.206610 GGAACGAAGGGAAGGGAGTAC 59.793 57.143 0.00 0.00 0.00 2.73
2260 2320 1.078324 AGGAACGAAGGGAAGGGAGTA 59.922 52.381 0.00 0.00 0.00 2.59
2261 2321 0.178900 AGGAACGAAGGGAAGGGAGT 60.179 55.000 0.00 0.00 0.00 3.85
2262 2322 0.984995 AAGGAACGAAGGGAAGGGAG 59.015 55.000 0.00 0.00 0.00 4.30
2263 2323 1.441695 AAAGGAACGAAGGGAAGGGA 58.558 50.000 0.00 0.00 0.00 4.20
2264 2324 2.287977 AAAAGGAACGAAGGGAAGGG 57.712 50.000 0.00 0.00 0.00 3.95
2265 2325 4.395625 ACTAAAAAGGAACGAAGGGAAGG 58.604 43.478 0.00 0.00 0.00 3.46
2266 2326 5.333875 CGAACTAAAAAGGAACGAAGGGAAG 60.334 44.000 0.00 0.00 0.00 3.46
2267 2327 4.512571 CGAACTAAAAAGGAACGAAGGGAA 59.487 41.667 0.00 0.00 0.00 3.97
2268 2328 4.060205 CGAACTAAAAAGGAACGAAGGGA 58.940 43.478 0.00 0.00 0.00 4.20
2269 2329 3.364664 GCGAACTAAAAAGGAACGAAGGG 60.365 47.826 0.00 0.00 0.00 3.95
2270 2330 3.249080 TGCGAACTAAAAAGGAACGAAGG 59.751 43.478 0.00 0.00 0.00 3.46
2271 2331 4.461992 TGCGAACTAAAAAGGAACGAAG 57.538 40.909 0.00 0.00 0.00 3.79
2272 2332 6.730960 ATATGCGAACTAAAAAGGAACGAA 57.269 33.333 0.00 0.00 0.00 3.85
2273 2333 7.760794 TCTTATATGCGAACTAAAAAGGAACGA 59.239 33.333 0.00 0.00 0.00 3.85
2274 2334 7.902032 TCTTATATGCGAACTAAAAAGGAACG 58.098 34.615 0.00 0.00 0.00 3.95
2282 2342 9.594478 TCAGTCAAATCTTATATGCGAACTAAA 57.406 29.630 0.00 0.00 0.00 1.85
2283 2343 9.594478 TTCAGTCAAATCTTATATGCGAACTAA 57.406 29.630 0.00 0.00 0.00 2.24
2284 2344 9.249457 CTTCAGTCAAATCTTATATGCGAACTA 57.751 33.333 0.00 0.00 0.00 2.24
2285 2345 7.766278 ACTTCAGTCAAATCTTATATGCGAACT 59.234 33.333 0.00 0.00 0.00 3.01
2286 2346 7.910304 ACTTCAGTCAAATCTTATATGCGAAC 58.090 34.615 0.00 0.00 0.00 3.95
2287 2347 8.131455 GACTTCAGTCAAATCTTATATGCGAA 57.869 34.615 1.86 0.00 44.18 4.70
2288 2348 7.700322 GACTTCAGTCAAATCTTATATGCGA 57.300 36.000 1.86 0.00 44.18 5.10
2303 2363 6.749923 ATTTTATGAGGCTTGACTTCAGTC 57.250 37.500 0.00 0.00 44.97 3.51
2304 2364 7.530426 AAATTTTATGAGGCTTGACTTCAGT 57.470 32.000 0.00 0.00 0.00 3.41
2305 2365 9.346725 GTTAAATTTTATGAGGCTTGACTTCAG 57.653 33.333 0.00 0.00 0.00 3.02
2306 2366 8.303876 GGTTAAATTTTATGAGGCTTGACTTCA 58.696 33.333 0.00 0.00 0.00 3.02
2307 2367 8.303876 TGGTTAAATTTTATGAGGCTTGACTTC 58.696 33.333 0.00 0.00 0.00 3.01
2308 2368 8.189119 TGGTTAAATTTTATGAGGCTTGACTT 57.811 30.769 0.00 0.00 0.00 3.01
2309 2369 7.775053 TGGTTAAATTTTATGAGGCTTGACT 57.225 32.000 0.00 0.00 0.00 3.41
2310 2370 9.435688 AATTGGTTAAATTTTATGAGGCTTGAC 57.564 29.630 0.00 0.00 34.72 3.18
2348 2408 9.234827 TGATTTCAGATTGTGAATGTTGATACT 57.765 29.630 0.00 0.00 44.89 2.12
2349 2409 9.844790 TTGATTTCAGATTGTGAATGTTGATAC 57.155 29.630 0.00 0.00 44.89 2.24
2364 2424 9.770097 ACACGTCTATTGATATTGATTTCAGAT 57.230 29.630 0.00 0.00 0.00 2.90
2365 2425 9.249457 GACACGTCTATTGATATTGATTTCAGA 57.751 33.333 0.00 0.00 0.00 3.27
2366 2426 9.034544 TGACACGTCTATTGATATTGATTTCAG 57.965 33.333 0.00 0.00 0.00 3.02
2367 2427 8.940768 TGACACGTCTATTGATATTGATTTCA 57.059 30.769 0.00 0.00 0.00 2.69
2368 2428 9.803130 CATGACACGTCTATTGATATTGATTTC 57.197 33.333 0.00 0.00 0.00 2.17
2369 2429 9.546428 TCATGACACGTCTATTGATATTGATTT 57.454 29.630 0.00 0.00 0.00 2.17
2370 2430 8.982685 GTCATGACACGTCTATTGATATTGATT 58.017 33.333 21.07 0.00 0.00 2.57
2371 2431 8.363390 AGTCATGACACGTCTATTGATATTGAT 58.637 33.333 27.02 0.00 0.00 2.57
2372 2432 7.716612 AGTCATGACACGTCTATTGATATTGA 58.283 34.615 27.02 0.00 0.00 2.57
2373 2433 7.936950 AGTCATGACACGTCTATTGATATTG 57.063 36.000 27.02 0.00 0.00 1.90
2376 2436 9.516314 CTTTAAGTCATGACACGTCTATTGATA 57.484 33.333 27.02 0.08 0.00 2.15
2377 2437 8.035394 ACTTTAAGTCATGACACGTCTATTGAT 58.965 33.333 27.02 0.00 0.00 2.57
2378 2438 7.375834 ACTTTAAGTCATGACACGTCTATTGA 58.624 34.615 27.02 5.47 0.00 2.57
2379 2439 7.582435 ACTTTAAGTCATGACACGTCTATTG 57.418 36.000 27.02 10.22 0.00 1.90
2380 2440 8.603242 AAACTTTAAGTCATGACACGTCTATT 57.397 30.769 27.02 13.12 0.00 1.73
2381 2441 7.870954 TGAAACTTTAAGTCATGACACGTCTAT 59.129 33.333 27.02 7.36 0.00 1.98
2382 2442 7.204604 TGAAACTTTAAGTCATGACACGTCTA 58.795 34.615 27.02 7.86 0.00 2.59
2383 2443 6.046593 TGAAACTTTAAGTCATGACACGTCT 58.953 36.000 27.02 3.53 0.00 4.18
2384 2444 6.281848 TGAAACTTTAAGTCATGACACGTC 57.718 37.500 27.02 12.38 0.00 4.34
2385 2445 6.861065 ATGAAACTTTAAGTCATGACACGT 57.139 33.333 27.02 14.18 30.84 4.49
2386 2446 9.265938 CAATATGAAACTTTAAGTCATGACACG 57.734 33.333 27.02 12.29 34.01 4.49
2404 2464 9.348476 TGCCATGCTAAAGTTATACAATATGAA 57.652 29.630 0.00 0.00 0.00 2.57
2405 2465 8.916628 TGCCATGCTAAAGTTATACAATATGA 57.083 30.769 0.00 0.00 0.00 2.15
2406 2466 9.964303 TTTGCCATGCTAAAGTTATACAATATG 57.036 29.630 0.00 0.00 0.00 1.78
2408 2468 9.964303 CATTTGCCATGCTAAAGTTATACAATA 57.036 29.630 0.00 0.00 0.00 1.90
2409 2469 8.477256 ACATTTGCCATGCTAAAGTTATACAAT 58.523 29.630 0.00 0.00 0.00 2.71
2410 2470 7.835822 ACATTTGCCATGCTAAAGTTATACAA 58.164 30.769 0.00 0.00 0.00 2.41
2411 2471 7.403312 ACATTTGCCATGCTAAAGTTATACA 57.597 32.000 0.00 0.00 0.00 2.29
2412 2472 7.973388 TCAACATTTGCCATGCTAAAGTTATAC 59.027 33.333 4.21 0.00 34.41 1.47
2413 2473 8.060931 TCAACATTTGCCATGCTAAAGTTATA 57.939 30.769 4.21 0.00 34.41 0.98
2414 2474 6.934056 TCAACATTTGCCATGCTAAAGTTAT 58.066 32.000 4.21 0.00 34.41 1.89
2415 2475 6.338214 TCAACATTTGCCATGCTAAAGTTA 57.662 33.333 4.21 0.00 34.41 2.24
2416 2476 5.212532 TCAACATTTGCCATGCTAAAGTT 57.787 34.783 0.00 0.00 36.19 2.66
2417 2477 4.870123 TCAACATTTGCCATGCTAAAGT 57.130 36.364 0.00 0.00 28.32 2.66
2418 2478 8.428186 AAATATCAACATTTGCCATGCTAAAG 57.572 30.769 0.00 0.00 0.00 1.85
2419 2479 8.789825 AAAATATCAACATTTGCCATGCTAAA 57.210 26.923 0.00 0.00 0.00 1.85
2420 2480 8.789825 AAAAATATCAACATTTGCCATGCTAA 57.210 26.923 0.00 0.00 0.00 3.09
2446 2506 9.438228 TCACAAAGTTTGACCGTATTTATATGA 57.562 29.630 22.23 7.49 0.00 2.15
2449 2509 9.275398 ACTTCACAAAGTTTGACCGTATTTATA 57.725 29.630 22.23 0.00 43.28 0.98
2450 2510 8.161699 ACTTCACAAAGTTTGACCGTATTTAT 57.838 30.769 22.23 0.00 43.28 1.40
2451 2511 7.556733 ACTTCACAAAGTTTGACCGTATTTA 57.443 32.000 22.23 0.00 43.28 1.40
2452 2512 6.445357 ACTTCACAAAGTTTGACCGTATTT 57.555 33.333 22.23 0.00 43.28 1.40
2494 2554 7.985752 CCTCCGGTTCTTTTTACTCTGTATATT 59.014 37.037 0.00 0.00 0.00 1.28
2495 2555 7.418712 CCCTCCGGTTCTTTTTACTCTGTATAT 60.419 40.741 0.00 0.00 0.00 0.86
2496 2556 6.127253 CCCTCCGGTTCTTTTTACTCTGTATA 60.127 42.308 0.00 0.00 0.00 1.47
2497 2557 5.338137 CCCTCCGGTTCTTTTTACTCTGTAT 60.338 44.000 0.00 0.00 0.00 2.29
2498 2558 4.020839 CCCTCCGGTTCTTTTTACTCTGTA 60.021 45.833 0.00 0.00 0.00 2.74
2499 2559 3.244457 CCCTCCGGTTCTTTTTACTCTGT 60.244 47.826 0.00 0.00 0.00 3.41
2500 2560 3.007614 TCCCTCCGGTTCTTTTTACTCTG 59.992 47.826 0.00 0.00 0.00 3.35
2501 2561 3.245441 TCCCTCCGGTTCTTTTTACTCT 58.755 45.455 0.00 0.00 0.00 3.24
2502 2562 3.007723 ACTCCCTCCGGTTCTTTTTACTC 59.992 47.826 0.00 0.00 0.00 2.59
2503 2563 2.977580 ACTCCCTCCGGTTCTTTTTACT 59.022 45.455 0.00 0.00 0.00 2.24
2504 2564 3.413846 ACTCCCTCCGGTTCTTTTTAC 57.586 47.619 0.00 0.00 0.00 2.01
2505 2565 3.903090 TGTACTCCCTCCGGTTCTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
2506 2566 2.707257 TGTACTCCCTCCGGTTCTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
2507 2567 2.332117 TGTACTCCCTCCGGTTCTTTT 58.668 47.619 0.00 0.00 0.00 2.27
2508 2568 2.019807 TGTACTCCCTCCGGTTCTTT 57.980 50.000 0.00 0.00 0.00 2.52
2509 2569 1.831736 CATGTACTCCCTCCGGTTCTT 59.168 52.381 0.00 0.00 0.00 2.52
2510 2570 1.006758 TCATGTACTCCCTCCGGTTCT 59.993 52.381 0.00 0.00 0.00 3.01
2511 2571 1.481871 TCATGTACTCCCTCCGGTTC 58.518 55.000 0.00 0.00 0.00 3.62
2512 2572 1.553704 GTTCATGTACTCCCTCCGGTT 59.446 52.381 0.00 0.00 0.00 4.44
2513 2573 1.192428 GTTCATGTACTCCCTCCGGT 58.808 55.000 0.00 0.00 0.00 5.28
2514 2574 1.486211 AGTTCATGTACTCCCTCCGG 58.514 55.000 0.00 0.00 0.00 5.14
2515 2575 4.145807 AGATAGTTCATGTACTCCCTCCG 58.854 47.826 8.41 0.00 0.00 4.63
2516 2576 4.216687 CGAGATAGTTCATGTACTCCCTCC 59.783 50.000 19.11 9.05 0.00 4.30
2517 2577 5.064558 TCGAGATAGTTCATGTACTCCCTC 58.935 45.833 8.41 13.91 0.00 4.30
2518 2578 5.050126 TCGAGATAGTTCATGTACTCCCT 57.950 43.478 8.41 7.18 0.00 4.20
2519 2579 5.968528 ATCGAGATAGTTCATGTACTCCC 57.031 43.478 8.41 2.52 0.00 4.30
2520 2580 8.350722 TGTTTATCGAGATAGTTCATGTACTCC 58.649 37.037 8.41 2.86 0.00 3.85
2521 2581 9.731819 TTGTTTATCGAGATAGTTCATGTACTC 57.268 33.333 8.41 0.00 0.00 2.59
2561 2621 8.942338 TTCTGTGCGTTATATATTCTCTTTGT 57.058 30.769 0.00 0.00 0.00 2.83
2595 2655 9.520204 TGCTTACCGAAAACAATATAGTAGTAC 57.480 33.333 0.00 0.00 0.00 2.73
2598 2658 9.698617 GTTTGCTTACCGAAAACAATATAGTAG 57.301 33.333 0.00 0.00 40.33 2.57
2599 2659 9.439500 AGTTTGCTTACCGAAAACAATATAGTA 57.561 29.630 0.00 0.00 42.63 1.82
2600 2660 8.331730 AGTTTGCTTACCGAAAACAATATAGT 57.668 30.769 0.00 0.00 42.63 2.12
2601 2661 7.908601 GGAGTTTGCTTACCGAAAACAATATAG 59.091 37.037 0.00 0.00 42.63 1.31
2602 2662 7.390996 TGGAGTTTGCTTACCGAAAACAATATA 59.609 33.333 0.00 0.00 42.63 0.86
2603 2663 6.207810 TGGAGTTTGCTTACCGAAAACAATAT 59.792 34.615 0.00 0.00 42.63 1.28
2604 2664 5.531659 TGGAGTTTGCTTACCGAAAACAATA 59.468 36.000 0.00 0.00 42.63 1.90
2605 2665 4.339814 TGGAGTTTGCTTACCGAAAACAAT 59.660 37.500 0.00 0.00 42.63 2.71
2611 2671 3.811083 TCTTTGGAGTTTGCTTACCGAA 58.189 40.909 0.00 0.00 0.00 4.30
2614 2674 6.749139 AGATTTTCTTTGGAGTTTGCTTACC 58.251 36.000 0.00 0.00 0.00 2.85
2633 2693 4.773149 GGGGATCTCGGTACTCATAGATTT 59.227 45.833 0.00 0.00 0.00 2.17
2693 2753 7.182026 TGGAGAGGAGATACTGGTTTAATTGAA 59.818 37.037 0.00 0.00 0.00 2.69
2724 2833 8.036575 CCTGTAGTAGCGACTATTAGTAGATCT 58.963 40.741 10.03 0.00 40.32 2.75
2745 2854 1.673626 GGAATTCCGAACACGCCTGTA 60.674 52.381 9.17 0.00 0.00 2.74
2746 2855 0.953960 GGAATTCCGAACACGCCTGT 60.954 55.000 9.17 0.00 0.00 4.00
2747 2856 0.953471 TGGAATTCCGAACACGCCTG 60.953 55.000 19.57 0.00 39.43 4.85
2748 2857 0.953960 GTGGAATTCCGAACACGCCT 60.954 55.000 19.57 0.00 39.43 5.52
2749 2858 1.500396 GTGGAATTCCGAACACGCC 59.500 57.895 19.57 0.00 39.43 5.68
2750 2859 1.231958 TGGTGGAATTCCGAACACGC 61.232 55.000 19.57 7.01 39.43 5.34
2751 2860 1.069500 GTTGGTGGAATTCCGAACACG 60.069 52.381 19.57 0.00 39.43 4.49
2752 2861 2.225727 GAGTTGGTGGAATTCCGAACAC 59.774 50.000 24.67 18.69 39.43 3.32
2753 2862 2.500229 GAGTTGGTGGAATTCCGAACA 58.500 47.619 24.67 18.18 39.43 3.18
2754 2863 1.810755 GGAGTTGGTGGAATTCCGAAC 59.189 52.381 19.57 19.34 39.43 3.95
2755 2864 1.422024 TGGAGTTGGTGGAATTCCGAA 59.578 47.619 19.57 9.36 42.25 4.30
2756 2865 1.060729 TGGAGTTGGTGGAATTCCGA 58.939 50.000 19.57 6.28 42.25 4.55
2757 2866 1.165270 GTGGAGTTGGTGGAATTCCG 58.835 55.000 19.57 0.00 42.25 4.30
2758 2867 1.165270 CGTGGAGTTGGTGGAATTCC 58.835 55.000 18.17 18.17 40.23 3.01
2759 2868 2.178912 TCGTGGAGTTGGTGGAATTC 57.821 50.000 0.00 0.00 0.00 2.17
2760 2869 2.649531 TTCGTGGAGTTGGTGGAATT 57.350 45.000 0.00 0.00 0.00 2.17
2761 2870 2.649531 TTTCGTGGAGTTGGTGGAAT 57.350 45.000 0.00 0.00 0.00 3.01
2762 2871 2.649531 ATTTCGTGGAGTTGGTGGAA 57.350 45.000 0.00 0.00 0.00 3.53
2763 2872 2.500229 GAATTTCGTGGAGTTGGTGGA 58.500 47.619 0.00 0.00 0.00 4.02
2764 2873 1.539827 GGAATTTCGTGGAGTTGGTGG 59.460 52.381 0.00 0.00 0.00 4.61
2765 2874 2.226330 TGGAATTTCGTGGAGTTGGTG 58.774 47.619 0.00 0.00 0.00 4.17
2766 2875 2.504367 CTGGAATTTCGTGGAGTTGGT 58.496 47.619 0.00 0.00 0.00 3.67
2767 2876 1.812571 CCTGGAATTTCGTGGAGTTGG 59.187 52.381 0.00 0.00 0.00 3.77
2768 2877 2.744202 CTCCTGGAATTTCGTGGAGTTG 59.256 50.000 19.67 4.82 39.39 3.16
2769 2878 3.059352 CTCCTGGAATTTCGTGGAGTT 57.941 47.619 19.67 0.00 39.39 3.01
2770 2879 2.770164 CTCCTGGAATTTCGTGGAGT 57.230 50.000 19.67 0.00 39.39 3.85
2771 2880 2.770164 ACTCCTGGAATTTCGTGGAG 57.230 50.000 23.34 23.34 46.93 3.86
2772 2881 4.513442 CATAACTCCTGGAATTTCGTGGA 58.487 43.478 0.00 8.19 0.00 4.02
2773 2882 3.627577 CCATAACTCCTGGAATTTCGTGG 59.372 47.826 0.00 0.00 35.70 4.94
2774 2883 4.513442 TCCATAACTCCTGGAATTTCGTG 58.487 43.478 0.00 0.00 39.83 4.35
2775 2884 4.225267 ACTCCATAACTCCTGGAATTTCGT 59.775 41.667 0.00 0.00 42.12 3.85
2776 2885 4.770795 ACTCCATAACTCCTGGAATTTCG 58.229 43.478 0.00 0.00 42.12 3.46
2777 2886 7.565680 TCTAACTCCATAACTCCTGGAATTTC 58.434 38.462 0.00 0.00 42.12 2.17
2778 2887 7.510675 TCTAACTCCATAACTCCTGGAATTT 57.489 36.000 0.00 0.00 42.12 1.82
2779 2888 7.510675 TTCTAACTCCATAACTCCTGGAATT 57.489 36.000 0.00 0.00 42.12 2.17
2780 2889 7.510675 TTTCTAACTCCATAACTCCTGGAAT 57.489 36.000 0.00 0.00 42.12 3.01
2781 2890 6.945636 TTTCTAACTCCATAACTCCTGGAA 57.054 37.500 0.00 0.00 42.12 3.53
2782 2891 6.945636 TTTTCTAACTCCATAACTCCTGGA 57.054 37.500 0.00 0.00 40.49 3.86
2810 2919 6.862209 AGTTGTAATTGAAAACTGTGAAGCA 58.138 32.000 2.53 0.00 33.01 3.91
2811 2920 6.417930 GGAGTTGTAATTGAAAACTGTGAAGC 59.582 38.462 6.89 0.00 34.37 3.86
2812 2921 7.432252 GTGGAGTTGTAATTGAAAACTGTGAAG 59.568 37.037 6.89 0.00 34.37 3.02
2813 2922 7.254852 GTGGAGTTGTAATTGAAAACTGTGAA 58.745 34.615 6.89 0.00 34.37 3.18
2814 2923 6.183360 GGTGGAGTTGTAATTGAAAACTGTGA 60.183 38.462 6.89 0.00 34.37 3.58
2815 2924 5.977129 GGTGGAGTTGTAATTGAAAACTGTG 59.023 40.000 6.89 0.00 34.37 3.66
2816 2925 5.220970 CGGTGGAGTTGTAATTGAAAACTGT 60.221 40.000 6.89 0.00 34.37 3.55
2817 2926 5.008217 TCGGTGGAGTTGTAATTGAAAACTG 59.992 40.000 6.89 0.00 34.37 3.16
2818 2927 5.008316 GTCGGTGGAGTTGTAATTGAAAACT 59.992 40.000 2.88 2.88 36.87 2.66
2819 2928 5.008316 AGTCGGTGGAGTTGTAATTGAAAAC 59.992 40.000 0.00 0.00 0.00 2.43
2820 2929 5.127491 AGTCGGTGGAGTTGTAATTGAAAA 58.873 37.500 0.00 0.00 0.00 2.29
2821 2930 4.710324 AGTCGGTGGAGTTGTAATTGAAA 58.290 39.130 0.00 0.00 0.00 2.69
2822 2931 4.312443 GAGTCGGTGGAGTTGTAATTGAA 58.688 43.478 0.00 0.00 0.00 2.69
2823 2932 3.306502 GGAGTCGGTGGAGTTGTAATTGA 60.307 47.826 0.00 0.00 0.00 2.57
2824 2933 3.000727 GGAGTCGGTGGAGTTGTAATTG 58.999 50.000 0.00 0.00 0.00 2.32
2825 2934 2.353406 CGGAGTCGGTGGAGTTGTAATT 60.353 50.000 0.00 0.00 0.00 1.40
2826 2935 1.203994 CGGAGTCGGTGGAGTTGTAAT 59.796 52.381 0.00 0.00 0.00 1.89
2827 2936 0.599558 CGGAGTCGGTGGAGTTGTAA 59.400 55.000 0.00 0.00 0.00 2.41
2828 2937 0.250858 TCGGAGTCGGTGGAGTTGTA 60.251 55.000 0.00 0.00 36.95 2.41
2829 2938 1.524863 CTCGGAGTCGGTGGAGTTGT 61.525 60.000 0.00 0.00 36.95 3.32
2830 2939 1.213013 CTCGGAGTCGGTGGAGTTG 59.787 63.158 0.00 0.00 36.95 3.16
2831 2940 0.961358 CTCTCGGAGTCGGTGGAGTT 60.961 60.000 4.69 0.00 36.95 3.01
2832 2941 1.377463 CTCTCGGAGTCGGTGGAGT 60.377 63.158 4.69 0.00 36.95 3.85
2833 2942 1.377463 ACTCTCGGAGTCGGTGGAG 60.377 63.158 4.69 15.70 38.71 3.86
2834 2943 1.674651 CACTCTCGGAGTCGGTGGA 60.675 63.158 4.69 0.00 41.37 4.02
2835 2944 2.701780 CCACTCTCGGAGTCGGTGG 61.702 68.421 22.11 22.11 41.37 4.61
2836 2945 1.649390 CTCCACTCTCGGAGTCGGTG 61.649 65.000 4.69 11.83 46.48 4.94
2837 2946 1.377463 CTCCACTCTCGGAGTCGGT 60.377 63.158 4.69 0.58 46.48 4.69
2838 2947 3.503749 CTCCACTCTCGGAGTCGG 58.496 66.667 4.69 4.54 46.48 4.79
2843 2952 0.178973 TCCACAACTCCACTCTCGGA 60.179 55.000 0.00 0.00 0.00 4.55
2844 2953 0.244994 CTCCACAACTCCACTCTCGG 59.755 60.000 0.00 0.00 0.00 4.63
2845 2954 0.962489 ACTCCACAACTCCACTCTCG 59.038 55.000 0.00 0.00 0.00 4.04
2846 2955 3.422796 TCTACTCCACAACTCCACTCTC 58.577 50.000 0.00 0.00 0.00 3.20
2847 2956 3.426615 CTCTACTCCACAACTCCACTCT 58.573 50.000 0.00 0.00 0.00 3.24
2848 2957 2.494073 CCTCTACTCCACAACTCCACTC 59.506 54.545 0.00 0.00 0.00 3.51
2849 2958 2.530701 CCTCTACTCCACAACTCCACT 58.469 52.381 0.00 0.00 0.00 4.00
2850 2959 1.066787 GCCTCTACTCCACAACTCCAC 60.067 57.143 0.00 0.00 0.00 4.02
2851 2960 1.203187 AGCCTCTACTCCACAACTCCA 60.203 52.381 0.00 0.00 0.00 3.86
2852 2961 1.562783 AGCCTCTACTCCACAACTCC 58.437 55.000 0.00 0.00 0.00 3.85
2853 2962 3.591023 GAAAGCCTCTACTCCACAACTC 58.409 50.000 0.00 0.00 0.00 3.01
2854 2963 2.303311 GGAAAGCCTCTACTCCACAACT 59.697 50.000 0.00 0.00 0.00 3.16
2855 2964 2.701107 GGAAAGCCTCTACTCCACAAC 58.299 52.381 0.00 0.00 0.00 3.32
2856 2965 1.275291 CGGAAAGCCTCTACTCCACAA 59.725 52.381 0.00 0.00 0.00 3.33
2857 2966 0.895530 CGGAAAGCCTCTACTCCACA 59.104 55.000 0.00 0.00 0.00 4.17
2858 2967 1.183549 TCGGAAAGCCTCTACTCCAC 58.816 55.000 0.00 0.00 0.00 4.02
2859 2968 1.549170 GTTCGGAAAGCCTCTACTCCA 59.451 52.381 0.00 0.00 0.00 3.86
2860 2969 1.826096 AGTTCGGAAAGCCTCTACTCC 59.174 52.381 0.00 0.00 0.00 3.85
2861 2970 2.417515 CCAGTTCGGAAAGCCTCTACTC 60.418 54.545 0.00 0.00 36.56 2.59
2862 2971 1.550976 CCAGTTCGGAAAGCCTCTACT 59.449 52.381 0.00 0.00 36.56 2.57
2863 2972 1.405661 CCCAGTTCGGAAAGCCTCTAC 60.406 57.143 0.00 0.00 36.56 2.59
2864 2973 0.902531 CCCAGTTCGGAAAGCCTCTA 59.097 55.000 0.00 0.00 36.56 2.43
2865 2974 1.679898 CCCAGTTCGGAAAGCCTCT 59.320 57.895 0.00 0.00 36.56 3.69
2866 2975 2.041115 GCCCAGTTCGGAAAGCCTC 61.041 63.158 0.00 0.00 36.56 4.70
2867 2976 2.034221 GCCCAGTTCGGAAAGCCT 59.966 61.111 0.00 0.00 36.56 4.58
2868 2977 3.062466 GGCCCAGTTCGGAAAGCC 61.062 66.667 0.00 6.59 36.56 4.35
2869 2978 3.431725 CGGCCCAGTTCGGAAAGC 61.432 66.667 0.00 0.00 36.56 3.51
2870 2979 3.431725 GCGGCCCAGTTCGGAAAG 61.432 66.667 0.00 0.00 36.56 2.62
2874 2983 4.524318 ATACGCGGCCCAGTTCGG 62.524 66.667 12.47 0.00 0.00 4.30
2875 2984 2.960129 GATACGCGGCCCAGTTCG 60.960 66.667 12.47 0.00 0.00 3.95
2876 2985 1.022451 TTTGATACGCGGCCCAGTTC 61.022 55.000 12.47 0.00 0.00 3.01
2877 2986 0.606944 TTTTGATACGCGGCCCAGTT 60.607 50.000 12.47 0.00 0.00 3.16
2878 2987 0.606944 TTTTTGATACGCGGCCCAGT 60.607 50.000 12.47 0.00 0.00 4.00
2879 2988 0.738389 ATTTTTGATACGCGGCCCAG 59.262 50.000 12.47 0.00 0.00 4.45
2880 2989 1.135257 CAATTTTTGATACGCGGCCCA 60.135 47.619 12.47 1.11 0.00 5.36
2881 2990 1.555477 CAATTTTTGATACGCGGCCC 58.445 50.000 12.47 0.00 0.00 5.80
2882 2991 1.555477 CCAATTTTTGATACGCGGCC 58.445 50.000 12.47 0.00 0.00 6.13
2883 2992 0.920664 GCCAATTTTTGATACGCGGC 59.079 50.000 12.47 0.00 0.00 6.53
2884 2993 2.097466 AGAGCCAATTTTTGATACGCGG 59.903 45.455 12.47 0.00 0.00 6.46
2885 2994 3.405170 AGAGCCAATTTTTGATACGCG 57.595 42.857 3.53 3.53 0.00 6.01
2886 2995 6.265577 ACATTAGAGCCAATTTTTGATACGC 58.734 36.000 0.00 0.00 0.00 4.42
2887 2996 8.687824 AAACATTAGAGCCAATTTTTGATACG 57.312 30.769 0.00 0.00 0.00 3.06
2983 3125 5.316167 GCTGGATACCAAATGACCATATCA 58.684 41.667 0.00 0.00 35.60 2.15
2984 3126 4.702131 GGCTGGATACCAAATGACCATATC 59.298 45.833 0.00 0.00 30.80 1.63
2985 3127 4.106179 TGGCTGGATACCAAATGACCATAT 59.894 41.667 0.00 0.00 33.12 1.78
2986 3128 3.461458 TGGCTGGATACCAAATGACCATA 59.539 43.478 0.00 0.00 33.12 2.74
3032 3184 1.227704 TTTTGACCTCGCGCCTTGA 60.228 52.632 0.00 0.00 0.00 3.02
3033 3185 1.082104 GTTTTGACCTCGCGCCTTG 60.082 57.895 0.00 0.00 0.00 3.61
3097 3256 1.672881 CTCGAATGATTTGCCTCACCC 59.327 52.381 0.00 0.00 0.00 4.61
3213 3376 3.027412 TGAGAGACTGTCCTATTGGAGC 58.973 50.000 3.76 0.00 44.16 4.70
3278 3441 0.034756 TCCAACACAGTCACATCGGG 59.965 55.000 0.00 0.00 0.00 5.14
3331 3494 2.290705 GGGTGTACTGTGGCCTTACATT 60.291 50.000 3.32 0.00 0.00 2.71
3332 3495 1.280998 GGGTGTACTGTGGCCTTACAT 59.719 52.381 3.32 0.00 0.00 2.29
3334 3497 0.688487 TGGGTGTACTGTGGCCTTAC 59.312 55.000 3.32 0.00 0.00 2.34
3335 3498 1.280710 CATGGGTGTACTGTGGCCTTA 59.719 52.381 3.32 0.00 0.00 2.69
3336 3499 0.038166 CATGGGTGTACTGTGGCCTT 59.962 55.000 3.32 0.00 0.00 4.35
3337 3500 1.133809 ACATGGGTGTACTGTGGCCT 61.134 55.000 3.32 0.00 36.63 5.19
3338 3501 0.251165 AACATGGGTGTACTGTGGCC 60.251 55.000 0.00 0.00 37.67 5.36
3339 3502 1.539827 GAAACATGGGTGTACTGTGGC 59.460 52.381 0.00 0.00 37.67 5.01
3340 3503 2.813754 CAGAAACATGGGTGTACTGTGG 59.186 50.000 0.00 0.00 37.67 4.17
3341 3504 3.476552 ACAGAAACATGGGTGTACTGTG 58.523 45.455 15.24 4.37 45.41 3.66
3343 3506 2.226437 GCACAGAAACATGGGTGTACTG 59.774 50.000 0.00 11.34 42.82 2.74
3417 3580 5.934043 TGATGCCGAATGAATAATACTCCTG 59.066 40.000 0.00 0.00 0.00 3.86
3418 3581 6.114187 TGATGCCGAATGAATAATACTCCT 57.886 37.500 0.00 0.00 0.00 3.69
3419 3582 5.934625 ACTGATGCCGAATGAATAATACTCC 59.065 40.000 0.00 0.00 0.00 3.85
3420 3583 6.183360 CGACTGATGCCGAATGAATAATACTC 60.183 42.308 0.00 0.00 0.00 2.59
3421 3584 5.635280 CGACTGATGCCGAATGAATAATACT 59.365 40.000 0.00 0.00 0.00 2.12
3448 3611 6.857777 AAGCTCAAAGCATGCTAATACTAG 57.142 37.500 23.00 13.36 45.56 2.57
3451 3614 4.501921 GCAAAGCTCAAAGCATGCTAATAC 59.498 41.667 23.00 9.99 46.19 1.89
3712 3991 9.562408 TGTACACTATCTACCAACATTCAAAAA 57.438 29.630 0.00 0.00 0.00 1.94
3713 3992 9.562408 TTGTACACTATCTACCAACATTCAAAA 57.438 29.630 0.00 0.00 0.00 2.44
3714 3993 8.995220 GTTGTACACTATCTACCAACATTCAAA 58.005 33.333 0.00 0.00 0.00 2.69
3715 3994 8.151596 TGTTGTACACTATCTACCAACATTCAA 58.848 33.333 0.00 0.00 0.00 2.69
3716 3995 7.601130 GTGTTGTACACTATCTACCAACATTCA 59.399 37.037 0.00 0.00 45.27 2.57
3717 3996 7.960793 GTGTTGTACACTATCTACCAACATTC 58.039 38.462 0.00 0.00 45.27 2.67
3718 3997 7.900782 GTGTTGTACACTATCTACCAACATT 57.099 36.000 0.00 0.00 45.27 2.71
4112 4400 5.455056 TTCTTTCTGGTGTGACTAGACTC 57.545 43.478 0.00 0.00 35.37 3.36
4155 4443 0.603569 AGTACCACTGCGAGTCCAAG 59.396 55.000 0.00 0.00 0.00 3.61
4183 4471 2.923655 AGCTCACGTGATTTACATCGTG 59.076 45.455 20.40 4.16 45.51 4.35
4184 4472 2.923655 CAGCTCACGTGATTTACATCGT 59.076 45.455 20.40 0.00 36.98 3.73
4185 4473 2.285256 GCAGCTCACGTGATTTACATCG 60.285 50.000 20.40 5.73 31.08 3.84
4186 4474 2.932614 AGCAGCTCACGTGATTTACATC 59.067 45.455 20.40 5.07 0.00 3.06
4187 4475 2.977914 AGCAGCTCACGTGATTTACAT 58.022 42.857 20.40 0.98 0.00 2.29
4188 4476 2.455674 AGCAGCTCACGTGATTTACA 57.544 45.000 20.40 0.00 0.00 2.41
4189 4477 2.159653 CCAAGCAGCTCACGTGATTTAC 60.160 50.000 20.40 9.55 0.00 2.01
4190 4478 2.076100 CCAAGCAGCTCACGTGATTTA 58.924 47.619 20.40 0.00 0.00 1.40
4191 4479 0.877071 CCAAGCAGCTCACGTGATTT 59.123 50.000 20.40 7.44 0.00 2.17
4192 4480 1.580845 GCCAAGCAGCTCACGTGATT 61.581 55.000 20.40 7.15 0.00 2.57
4193 4481 2.037136 GCCAAGCAGCTCACGTGAT 61.037 57.895 20.40 1.42 0.00 3.06
4194 4482 2.666190 GCCAAGCAGCTCACGTGA 60.666 61.111 18.88 18.88 0.00 4.35
4195 4483 4.081030 CGCCAAGCAGCTCACGTG 62.081 66.667 9.94 9.94 0.00 4.49
4196 4484 4.299547 TCGCCAAGCAGCTCACGT 62.300 61.111 0.00 0.00 0.00 4.49
4197 4485 3.485431 CTCGCCAAGCAGCTCACG 61.485 66.667 0.00 0.00 0.00 4.35
4210 4498 1.409982 GAAACTCAGCTCTCGCTCGC 61.410 60.000 0.00 0.00 45.15 5.03
4211 4499 0.109551 TGAAACTCAGCTCTCGCTCG 60.110 55.000 0.00 0.00 45.15 5.03
4212 4500 1.336332 TGTGAAACTCAGCTCTCGCTC 60.336 52.381 0.00 0.00 41.09 5.03
4213 4501 0.676184 TGTGAAACTCAGCTCTCGCT 59.324 50.000 0.00 0.00 43.13 4.93
4224 4512 7.276218 CGGATAATGCAAAATCATTGTGAAACT 59.724 33.333 12.24 0.00 37.27 2.66
4241 4529 1.599542 GCAAGGACAGACGGATAATGC 59.400 52.381 0.00 0.00 0.00 3.56
4242 4530 2.609459 GTGCAAGGACAGACGGATAATG 59.391 50.000 0.00 0.00 0.00 1.90
4243 4531 2.236146 TGTGCAAGGACAGACGGATAAT 59.764 45.455 0.00 0.00 0.00 1.28
4245 4533 1.262417 TGTGCAAGGACAGACGGATA 58.738 50.000 0.00 0.00 0.00 2.59
4246 4534 0.615331 ATGTGCAAGGACAGACGGAT 59.385 50.000 0.17 0.00 0.00 4.18
4247 4535 0.320683 CATGTGCAAGGACAGACGGA 60.321 55.000 0.17 0.00 0.00 4.69
4248 4536 1.300971 CCATGTGCAAGGACAGACGG 61.301 60.000 0.17 0.00 0.00 4.79
4249 4537 0.320683 TCCATGTGCAAGGACAGACG 60.321 55.000 0.17 0.00 0.00 4.18
4250 4538 1.741706 CATCCATGTGCAAGGACAGAC 59.258 52.381 5.99 0.00 36.60 3.51
4251 4539 1.629861 TCATCCATGTGCAAGGACAGA 59.370 47.619 5.99 5.31 36.60 3.41
4252 4540 2.118313 TCATCCATGTGCAAGGACAG 57.882 50.000 5.99 3.30 36.60 3.51
4253 4541 2.040145 TCTTCATCCATGTGCAAGGACA 59.960 45.455 5.99 0.00 36.60 4.02
4254 4542 2.681848 CTCTTCATCCATGTGCAAGGAC 59.318 50.000 5.99 0.00 36.60 3.85
4255 4543 2.356432 CCTCTTCATCCATGTGCAAGGA 60.356 50.000 6.29 6.29 38.50 3.36
4276 4564 3.871594 GTGTATCACCAACATACTCAGGC 59.128 47.826 0.00 0.00 0.00 4.85
4492 5104 1.153667 CTCGGAGAAGAGCACCTGC 60.154 63.158 0.00 0.00 37.44 4.85
4716 5328 1.830279 AGGTGGATGCACACAGAATG 58.170 50.000 19.67 0.00 43.08 2.67
4732 5344 2.301009 ACGAATTAACCGTCCAGAAGGT 59.699 45.455 0.00 0.00 45.04 3.50
4734 5346 3.991773 TCAACGAATTAACCGTCCAGAAG 59.008 43.478 5.38 0.00 39.57 2.85
4736 5348 3.663995 TCAACGAATTAACCGTCCAGA 57.336 42.857 5.38 2.85 39.57 3.86
4740 5352 3.004862 ACCCATCAACGAATTAACCGTC 58.995 45.455 5.38 0.00 39.57 4.79
4741 5353 3.004862 GACCCATCAACGAATTAACCGT 58.995 45.455 0.00 0.00 42.61 4.83
4743 5355 3.063045 GTCGACCCATCAACGAATTAACC 59.937 47.826 3.51 0.00 37.77 2.85
4744 5356 3.241868 CGTCGACCCATCAACGAATTAAC 60.242 47.826 10.58 0.00 37.31 2.01
4752 5364 0.601841 ACCAACGTCGACCCATCAAC 60.602 55.000 10.58 0.00 0.00 3.18
4753 5365 0.107081 AACCAACGTCGACCCATCAA 59.893 50.000 10.58 0.00 0.00 2.57
4912 5524 2.105128 GAGTCATCCACCCTCGCG 59.895 66.667 0.00 0.00 0.00 5.87
5118 5730 4.098807 ACCAAACAAAACCAGTCCATACAC 59.901 41.667 0.00 0.00 0.00 2.90
5177 5789 5.645497 CAGCTTTAGTTTCACAGCTAGGATT 59.355 40.000 0.00 0.00 40.75 3.01
5210 5822 5.602978 AGAATGTTATAACGACCCCTCTGAT 59.397 40.000 10.92 0.00 0.00 2.90
5225 5837 6.703607 CGATCCAGACTTAGCAAGAATGTTAT 59.296 38.462 3.37 0.00 0.00 1.89
5226 5838 6.042777 CGATCCAGACTTAGCAAGAATGTTA 58.957 40.000 3.37 0.00 0.00 2.41
5228 5840 4.160439 TCGATCCAGACTTAGCAAGAATGT 59.840 41.667 3.37 0.00 0.00 2.71
5231 5843 4.160439 ACATCGATCCAGACTTAGCAAGAA 59.840 41.667 0.00 0.00 0.00 2.52
5245 5857 7.036220 AGATTTCACGGATATAACATCGATCC 58.964 38.462 0.00 0.00 36.55 3.36
5246 5858 8.467402 AAGATTTCACGGATATAACATCGATC 57.533 34.615 0.00 0.00 0.00 3.69
5247 5859 9.355215 GTAAGATTTCACGGATATAACATCGAT 57.645 33.333 0.00 0.00 0.00 3.59
5248 5860 8.354426 TGTAAGATTTCACGGATATAACATCGA 58.646 33.333 0.00 0.00 0.00 3.59
5249 5861 8.515473 TGTAAGATTTCACGGATATAACATCG 57.485 34.615 0.00 0.00 0.00 3.84
5260 5872 7.482743 CACAAATCTCAATGTAAGATTTCACGG 59.517 37.037 7.86 1.70 45.74 4.94
5329 5941 9.827411 GATTTAACCAATTCTCACTCAACTAAC 57.173 33.333 0.00 0.00 0.00 2.34
5331 5943 9.436957 GAGATTTAACCAATTCTCACTCAACTA 57.563 33.333 0.00 0.00 39.42 2.24
5375 5987 7.451731 AGATTGGATTATAGGAAAGGTGTGA 57.548 36.000 0.00 0.00 0.00 3.58
5388 6000 7.343833 AGCCTGATTGTTGAAAGATTGGATTAT 59.656 33.333 0.00 0.00 0.00 1.28
5421 6033 2.264005 TAGCCGAGCAGGAACAAAAA 57.736 45.000 2.12 0.00 45.00 1.94
5426 6038 2.596904 TATGTTAGCCGAGCAGGAAC 57.403 50.000 2.12 0.00 45.00 3.62
5427 6039 2.806745 GCATATGTTAGCCGAGCAGGAA 60.807 50.000 4.29 0.00 45.00 3.36
5428 6040 1.270305 GCATATGTTAGCCGAGCAGGA 60.270 52.381 4.29 0.00 45.00 3.86
5429 6041 1.151668 GCATATGTTAGCCGAGCAGG 58.848 55.000 4.29 0.00 44.97 4.85
5443 6055 6.597832 AGATAGCGTCCTAGAAAAGCATAT 57.402 37.500 0.00 0.00 0.00 1.78
5453 6065 4.762765 ACTGGATGTAAGATAGCGTCCTAG 59.237 45.833 0.00 0.00 40.49 3.02
5459 6071 4.489810 GGATGACTGGATGTAAGATAGCG 58.510 47.826 0.00 0.00 0.00 4.26
5462 6074 5.123979 CGATCGGATGACTGGATGTAAGATA 59.876 44.000 7.38 0.00 0.00 1.98
5464 6076 3.253432 CGATCGGATGACTGGATGTAAGA 59.747 47.826 7.38 0.00 0.00 2.10
5465 6077 3.569548 CGATCGGATGACTGGATGTAAG 58.430 50.000 7.38 0.00 0.00 2.34
5467 6079 1.886542 CCGATCGGATGACTGGATGTA 59.113 52.381 30.62 0.00 37.50 2.29
5468 6080 0.676184 CCGATCGGATGACTGGATGT 59.324 55.000 30.62 0.00 37.50 3.06
5471 6083 2.498941 GCCCGATCGGATGACTGGA 61.499 63.158 35.42 0.00 37.50 3.86
5472 6084 2.029666 GCCCGATCGGATGACTGG 59.970 66.667 35.42 17.27 37.50 4.00
5484 6096 3.254657 CCAACAGAAAAACTAATGCCCGA 59.745 43.478 0.00 0.00 0.00 5.14
5596 6209 7.047271 TGTGATGTGTTTATCTGCTATGCTAA 58.953 34.615 0.00 0.00 0.00 3.09
5610 6223 7.779798 AGTATATGCCCTAAATGTGATGTGTTT 59.220 33.333 0.00 0.00 0.00 2.83
5615 6228 9.376075 CTTCTAGTATATGCCCTAAATGTGATG 57.624 37.037 0.00 0.00 0.00 3.07
5623 6236 7.553504 TTCATGCTTCTAGTATATGCCCTAA 57.446 36.000 0.00 0.00 0.00 2.69
5631 6244 8.297426 CGTGGTAGAATTCATGCTTCTAGTATA 58.703 37.037 8.44 3.67 36.23 1.47
5837 6450 1.548081 TTCGTGATCCTGTACGGGAA 58.452 50.000 27.07 9.35 40.48 3.97
5856 6469 3.330720 CCTCTGGAACCCCGCCTT 61.331 66.667 0.00 0.00 34.29 4.35
5869 6482 2.204059 AAGGGACAGCAGGCCTCT 60.204 61.111 0.00 0.00 0.00 3.69
5915 6528 0.811281 GCCGCCAAGCAAGTATTCTT 59.189 50.000 0.00 0.00 0.00 2.52
5920 6533 4.998400 TGCGCCGCCAAGCAAGTA 62.998 61.111 6.63 0.00 40.78 2.24
5979 6592 0.315568 GGCAGATGTCTACCCTAGCG 59.684 60.000 0.00 0.00 0.00 4.26
5992 6605 3.445450 CCGCACTATATAGTCAGGCAGAT 59.555 47.826 12.62 0.00 33.46 2.90
6083 6696 4.777140 ATTAACGGACGCGTTAATTACC 57.223 40.909 20.65 7.92 46.46 2.85
6311 6935 3.616076 CGGAAGTTGAGAGAGAGTTGCAT 60.616 47.826 0.00 0.00 0.00 3.96
6354 6978 2.700371 ACATGTGAGTGGAGTGAGTGAA 59.300 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.