Multiple sequence alignment - TraesCS1A01G118000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G118000 chr1A 100.000 3395 0 0 1 3395 125153663 125157057 0.000000e+00 6270.0
1 TraesCS1A01G118000 chr1A 93.627 204 9 1 1510 1709 48757991 48758194 5.510000e-78 302.0
2 TraesCS1A01G118000 chr1A 96.532 173 6 0 1340 1512 489287836 489288008 1.540000e-73 287.0
3 TraesCS1A01G118000 chr1A 83.436 326 30 9 1 306 37523843 37523522 7.170000e-72 281.0
4 TraesCS1A01G118000 chr1A 95.954 173 7 0 1340 1512 48757732 48757904 7.170000e-72 281.0
5 TraesCS1A01G118000 chr1B 91.936 1699 117 7 1712 3395 175679094 175680787 0.000000e+00 2361.0
6 TraesCS1A01G118000 chr1B 92.281 570 35 3 776 1339 175678536 175679102 0.000000e+00 800.0
7 TraesCS1A01G118000 chr1B 89.572 374 31 4 1340 1709 117204831 117204462 5.130000e-128 468.0
8 TraesCS1A01G118000 chr1B 93.137 204 10 1 1510 1709 97741317 97741114 2.560000e-76 296.0
9 TraesCS1A01G118000 chr1B 95.954 173 7 0 1340 1512 522754526 522754698 7.170000e-72 281.0
10 TraesCS1A01G118000 chr1B 82.624 282 24 21 268 539 537327119 537327385 3.410000e-55 226.0
11 TraesCS1A01G118000 chr1B 91.667 60 5 0 625 684 175678453 175678512 2.170000e-12 84.2
12 TraesCS1A01G118000 chr2A 87.827 764 90 3 2608 3371 147490518 147491278 0.000000e+00 893.0
13 TraesCS1A01G118000 chr2A 87.275 778 90 8 2608 3381 557404447 557403675 0.000000e+00 880.0
14 TraesCS1A01G118000 chr2A 84.860 786 116 3 2608 3393 10143474 10144256 0.000000e+00 789.0
15 TraesCS1A01G118000 chr2A 80.645 310 37 14 234 533 391355237 391354941 5.700000e-53 219.0
16 TraesCS1A01G118000 chr4A 89.695 689 70 1 2705 3393 552466367 552465680 0.000000e+00 878.0
17 TraesCS1A01G118000 chr4A 98.077 52 1 0 531 582 32066177 32066126 1.300000e-14 91.6
18 TraesCS1A01G118000 chr4A 95.833 48 1 1 585 631 32065414 32065367 3.630000e-10 76.8
19 TraesCS1A01G118000 chr6D 86.300 781 102 5 2613 3393 392589170 392589945 0.000000e+00 845.0
20 TraesCS1A01G118000 chr2D 86.211 776 97 8 2608 3381 429832289 429833056 0.000000e+00 832.0
21 TraesCS1A01G118000 chr2D 83.210 405 27 15 1 386 35555394 35555012 1.950000e-87 333.0
22 TraesCS1A01G118000 chrUn 84.860 786 116 3 2608 3393 285838238 285837456 0.000000e+00 789.0
23 TraesCS1A01G118000 chrUn 87.500 384 40 6 1 376 124659025 124658642 1.450000e-118 436.0
24 TraesCS1A01G118000 chrUn 93.627 204 9 1 1510 1709 358639630 358639427 5.510000e-78 302.0
25 TraesCS1A01G118000 chrUn 95.954 173 7 0 1340 1512 358639890 358639718 7.170000e-72 281.0
26 TraesCS1A01G118000 chr4D 84.625 787 115 5 2608 3393 66548353 66549134 0.000000e+00 778.0
27 TraesCS1A01G118000 chr4D 87.760 384 26 9 21 386 319317864 319318244 2.420000e-116 429.0
28 TraesCS1A01G118000 chr4B 93.523 386 25 0 1 386 403672749 403672364 2.940000e-160 575.0
29 TraesCS1A01G118000 chr4B 93.137 204 10 1 1510 1709 3312952 3313155 2.560000e-76 296.0
30 TraesCS1A01G118000 chr4B 90.566 159 10 4 383 539 403672253 403672098 4.440000e-49 206.0
31 TraesCS1A01G118000 chr4B 98.000 50 1 0 582 631 322696736 322696785 1.680000e-13 87.9
32 TraesCS1A01G118000 chr4B 96.154 52 0 1 531 582 322696020 322696069 2.170000e-12 84.2
33 TraesCS1A01G118000 chr5B 93.005 386 27 0 1 386 295584647 295585032 6.360000e-157 564.0
34 TraesCS1A01G118000 chr5B 87.621 412 25 9 1 386 230238323 230238734 3.990000e-124 455.0
35 TraesCS1A01G118000 chr5B 92.617 149 9 2 383 531 295585143 295585289 2.650000e-51 213.0
36 TraesCS1A01G118000 chr5B 90.323 155 11 2 383 534 427919120 427919273 2.070000e-47 200.0
37 TraesCS1A01G118000 chr6B 91.192 386 23 1 1 386 683572727 683573101 6.500000e-142 514.0
38 TraesCS1A01G118000 chr6B 91.538 260 18 4 128 386 35204918 35204662 4.170000e-94 355.0
39 TraesCS1A01G118000 chr6B 80.678 295 30 20 252 534 134484700 134484979 1.600000e-48 204.0
40 TraesCS1A01G118000 chr6B 98.000 50 1 0 582 631 686408214 686408165 1.680000e-13 87.9
41 TraesCS1A01G118000 chr5D 86.854 426 16 12 1 386 120610825 120611250 1.120000e-119 440.0
42 TraesCS1A01G118000 chr5A 85.606 396 38 12 1 386 653292669 653293055 6.830000e-107 398.0
43 TraesCS1A01G118000 chr3B 90.769 260 23 1 128 386 17971756 17971497 2.510000e-91 346.0
44 TraesCS1A01G118000 chr3B 93.137 204 10 1 1510 1709 744979764 744979561 2.560000e-76 296.0
45 TraesCS1A01G118000 chr3B 90.132 152 11 2 383 531 689417787 689417937 9.610000e-46 195.0
46 TraesCS1A01G118000 chr3B 98.077 52 1 0 531 582 805234471 805234420 1.300000e-14 91.6
47 TraesCS1A01G118000 chr7A 93.627 204 9 1 1510 1709 713621705 713621502 5.510000e-78 302.0
48 TraesCS1A01G118000 chr7A 93.627 204 9 1 1510 1709 713629182 713628979 5.510000e-78 302.0
49 TraesCS1A01G118000 chr7A 93.627 204 9 1 1510 1709 713656031 713655828 5.510000e-78 302.0
50 TraesCS1A01G118000 chr7A 96.552 174 6 0 1339 1512 578361345 578361172 4.290000e-74 289.0
51 TraesCS1A01G118000 chr7A 96.532 173 6 0 1340 1512 572184171 572183999 1.540000e-73 287.0
52 TraesCS1A01G118000 chr7A 95.977 174 7 0 1339 1512 641179968 641179795 1.990000e-72 283.0
53 TraesCS1A01G118000 chr7A 95.954 173 7 0 1340 1512 713621965 713621793 7.170000e-72 281.0
54 TraesCS1A01G118000 chr1D 92.135 178 10 2 2369 2542 114686008 114686185 7.270000e-62 248.0
55 TraesCS1A01G118000 chr7B 81.333 300 30 21 252 540 97964534 97964250 1.590000e-53 220.0
56 TraesCS1A01G118000 chr7D 90.604 149 12 2 383 530 16902494 16902641 2.670000e-46 196.0
57 TraesCS1A01G118000 chr3D 95.556 45 2 0 582 626 498405406 498405450 4.700000e-09 73.1
58 TraesCS1A01G118000 chr3D 100.000 32 0 0 531 562 498404684 498404715 3.660000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G118000 chr1A 125153663 125157057 3394 False 6270.000000 6270 100.000000 1 3395 1 chr1A.!!$F1 3394
1 TraesCS1A01G118000 chr1B 175678453 175680787 2334 False 1081.733333 2361 91.961333 625 3395 3 chr1B.!!$F3 2770
2 TraesCS1A01G118000 chr2A 147490518 147491278 760 False 893.000000 893 87.827000 2608 3371 1 chr2A.!!$F2 763
3 TraesCS1A01G118000 chr2A 557403675 557404447 772 True 880.000000 880 87.275000 2608 3381 1 chr2A.!!$R2 773
4 TraesCS1A01G118000 chr2A 10143474 10144256 782 False 789.000000 789 84.860000 2608 3393 1 chr2A.!!$F1 785
5 TraesCS1A01G118000 chr4A 552465680 552466367 687 True 878.000000 878 89.695000 2705 3393 1 chr4A.!!$R1 688
6 TraesCS1A01G118000 chr6D 392589170 392589945 775 False 845.000000 845 86.300000 2613 3393 1 chr6D.!!$F1 780
7 TraesCS1A01G118000 chr2D 429832289 429833056 767 False 832.000000 832 86.211000 2608 3381 1 chr2D.!!$F1 773
8 TraesCS1A01G118000 chrUn 285837456 285838238 782 True 789.000000 789 84.860000 2608 3393 1 chrUn.!!$R2 785
9 TraesCS1A01G118000 chr4D 66548353 66549134 781 False 778.000000 778 84.625000 2608 3393 1 chr4D.!!$F1 785
10 TraesCS1A01G118000 chr4B 403672098 403672749 651 True 390.500000 575 92.044500 1 539 2 chr4B.!!$R1 538
11 TraesCS1A01G118000 chr5B 295584647 295585289 642 False 388.500000 564 92.811000 1 531 2 chr5B.!!$F3 530

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.170339 GAAAAATCTTCCACCGCGGG 59.830 55.0 31.76 18.27 34.36 6.13 F
1233 1356 0.108041 TTCTCCGGTTAATCGCACCC 60.108 55.0 1.58 0.00 0.00 4.61 F
1405 1528 0.027194 CATCCATTCTGCGCTTCGTG 59.973 55.0 9.73 2.55 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1386 1509 0.027194 CACGAAGCGCAGAATGGATG 59.973 55.0 11.47 0.00 35.86 3.51 R
2048 2174 0.037232 GGTGTCGAAGGAGAAGGTGG 60.037 60.0 0.00 0.00 0.00 4.61 R
2441 2569 0.251354 TTCATGGTCTGCAGCTCCTC 59.749 55.0 21.97 6.89 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 2.609747 AGTGTCTAGCTTCCACCAAGA 58.390 47.619 0.00 0.00 33.29 3.02
55 56 5.234972 CACCAAGAAAGAAAATGCTTCAACC 59.765 40.000 0.00 0.00 0.00 3.77
63 64 3.791973 AAATGCTTCAACCGTTTGTGA 57.208 38.095 0.00 0.00 34.02 3.58
78 79 4.803088 CGTTTGTGAAAAAGCTTCATCCAA 59.197 37.500 0.00 5.54 0.00 3.53
82 83 6.707440 TGTGAAAAAGCTTCATCCAACTAA 57.293 33.333 0.00 0.00 0.00 2.24
105 106 4.218312 AGGAAAAGTTTCAAGAGTGGCAT 58.782 39.130 6.15 0.00 38.92 4.40
123 124 3.118992 GGCATGAGGAAAAATCTTCCACC 60.119 47.826 0.00 0.00 41.00 4.61
128 129 0.170339 GAAAAATCTTCCACCGCGGG 59.830 55.000 31.76 18.27 34.36 6.13
136 137 3.291383 CCACCGCGGGAAAAAGCA 61.291 61.111 31.76 0.00 0.00 3.91
143 144 1.601663 CGCGGGAAAAAGCATCAAACA 60.602 47.619 0.00 0.00 0.00 2.83
144 145 2.687370 GCGGGAAAAAGCATCAAACAT 58.313 42.857 0.00 0.00 0.00 2.71
405 520 0.747255 GCTGCAGATCTAACCCGAGA 59.253 55.000 20.43 0.00 0.00 4.04
418 533 0.315568 CCCGAGATAGAAGAAGCCCG 59.684 60.000 0.00 0.00 0.00 6.13
476 593 1.226974 GGCTCGCATCGAACTGCTA 60.227 57.895 9.19 0.00 40.06 3.49
497 614 2.328099 GCTGGACCGGCTGAAACTG 61.328 63.158 18.66 0.00 32.24 3.16
532 649 2.973899 CGCCTAGCATCGCCCTAT 59.026 61.111 0.00 0.00 0.00 2.57
534 651 0.179134 CGCCTAGCATCGCCCTATAC 60.179 60.000 0.00 0.00 0.00 1.47
535 652 0.895530 GCCTAGCATCGCCCTATACA 59.104 55.000 0.00 0.00 0.00 2.29
537 654 2.093447 GCCTAGCATCGCCCTATACAAT 60.093 50.000 0.00 0.00 0.00 2.71
538 655 3.132289 GCCTAGCATCGCCCTATACAATA 59.868 47.826 0.00 0.00 0.00 1.90
539 656 4.202264 GCCTAGCATCGCCCTATACAATAT 60.202 45.833 0.00 0.00 0.00 1.28
540 657 5.292765 CCTAGCATCGCCCTATACAATATG 58.707 45.833 0.00 0.00 0.00 1.78
541 658 5.069119 CCTAGCATCGCCCTATACAATATGA 59.931 44.000 0.00 0.00 0.00 2.15
542 659 4.759782 AGCATCGCCCTATACAATATGAC 58.240 43.478 0.00 0.00 0.00 3.06
543 660 3.871594 GCATCGCCCTATACAATATGACC 59.128 47.826 0.00 0.00 0.00 4.02
544 661 4.622933 GCATCGCCCTATACAATATGACCA 60.623 45.833 0.00 0.00 0.00 4.02
545 662 5.487433 CATCGCCCTATACAATATGACCAA 58.513 41.667 0.00 0.00 0.00 3.67
546 663 5.147330 TCGCCCTATACAATATGACCAAG 57.853 43.478 0.00 0.00 0.00 3.61
547 664 4.591498 TCGCCCTATACAATATGACCAAGT 59.409 41.667 0.00 0.00 0.00 3.16
548 665 5.776208 TCGCCCTATACAATATGACCAAGTA 59.224 40.000 0.00 0.00 0.00 2.24
549 666 6.439375 TCGCCCTATACAATATGACCAAGTAT 59.561 38.462 0.00 0.00 0.00 2.12
550 667 7.616542 TCGCCCTATACAATATGACCAAGTATA 59.383 37.037 0.00 0.00 0.00 1.47
551 668 8.255206 CGCCCTATACAATATGACCAAGTATAA 58.745 37.037 0.00 0.00 30.04 0.98
552 669 9.953565 GCCCTATACAATATGACCAAGTATAAA 57.046 33.333 0.00 0.00 30.04 1.40
586 703 8.940768 ATTTTTGGAAACATAATATTGGTCGG 57.059 30.769 0.00 0.00 42.32 4.79
587 704 7.704578 TTTTGGAAACATAATATTGGTCGGA 57.295 32.000 0.00 0.00 42.32 4.55
588 705 6.687081 TTGGAAACATAATATTGGTCGGAC 57.313 37.500 0.00 0.00 42.32 4.79
589 706 5.127491 TGGAAACATAATATTGGTCGGACC 58.873 41.667 20.36 20.36 34.90 4.46
590 707 4.517832 GGAAACATAATATTGGTCGGACCC 59.482 45.833 23.81 7.15 37.50 4.46
591 708 3.396260 ACATAATATTGGTCGGACCCG 57.604 47.619 23.81 1.31 37.50 5.28
592 709 2.701951 ACATAATATTGGTCGGACCCGT 59.298 45.455 23.81 14.53 37.50 5.28
593 710 2.894763 TAATATTGGTCGGACCCGTG 57.105 50.000 23.81 0.00 37.50 4.94
594 711 0.179468 AATATTGGTCGGACCCGTGG 59.821 55.000 23.81 0.00 37.50 4.94
595 712 2.319890 ATATTGGTCGGACCCGTGGC 62.320 60.000 23.81 0.00 37.50 5.01
598 715 4.404098 GGTCGGACCCGTGGCATT 62.404 66.667 16.55 0.00 40.74 3.56
599 716 2.818274 GTCGGACCCGTGGCATTC 60.818 66.667 8.42 0.00 40.74 2.67
600 717 4.090588 TCGGACCCGTGGCATTCC 62.091 66.667 8.42 0.00 40.74 3.01
602 719 4.404098 GGACCCGTGGCATTCCGT 62.404 66.667 0.00 0.00 34.14 4.69
603 720 2.359478 GACCCGTGGCATTCCGTT 60.359 61.111 0.00 0.00 34.14 4.44
604 721 2.359478 ACCCGTGGCATTCCGTTC 60.359 61.111 0.00 0.00 34.14 3.95
605 722 3.496131 CCCGTGGCATTCCGTTCG 61.496 66.667 0.00 0.00 34.14 3.95
606 723 2.433491 CCGTGGCATTCCGTTCGA 60.433 61.111 0.00 0.00 34.14 3.71
607 724 1.813753 CCGTGGCATTCCGTTCGAT 60.814 57.895 0.00 0.00 34.14 3.59
608 725 1.348250 CGTGGCATTCCGTTCGATG 59.652 57.895 0.00 0.00 34.14 3.84
609 726 1.081556 CGTGGCATTCCGTTCGATGA 61.082 55.000 0.00 0.00 34.14 2.92
610 727 0.373716 GTGGCATTCCGTTCGATGAC 59.626 55.000 0.00 0.00 34.14 3.06
611 728 0.249120 TGGCATTCCGTTCGATGACT 59.751 50.000 0.00 0.00 34.14 3.41
612 729 0.652592 GGCATTCCGTTCGATGACTG 59.347 55.000 0.00 0.00 0.00 3.51
613 730 1.640428 GCATTCCGTTCGATGACTGA 58.360 50.000 0.00 0.00 0.00 3.41
614 731 1.999735 GCATTCCGTTCGATGACTGAA 59.000 47.619 0.00 0.00 0.00 3.02
615 732 2.415168 GCATTCCGTTCGATGACTGAAA 59.585 45.455 0.00 0.00 0.00 2.69
616 733 3.725010 GCATTCCGTTCGATGACTGAAAC 60.725 47.826 0.00 0.00 0.00 2.78
617 734 3.380479 TTCCGTTCGATGACTGAAACT 57.620 42.857 0.00 0.00 0.00 2.66
618 735 4.508461 TTCCGTTCGATGACTGAAACTA 57.492 40.909 0.00 0.00 0.00 2.24
619 736 4.508461 TCCGTTCGATGACTGAAACTAA 57.492 40.909 0.00 0.00 0.00 2.24
620 737 4.873817 TCCGTTCGATGACTGAAACTAAA 58.126 39.130 0.00 0.00 0.00 1.85
621 738 4.682860 TCCGTTCGATGACTGAAACTAAAC 59.317 41.667 0.00 0.00 0.00 2.01
622 739 4.446385 CCGTTCGATGACTGAAACTAAACA 59.554 41.667 0.00 0.00 0.00 2.83
623 740 5.388475 CCGTTCGATGACTGAAACTAAACAG 60.388 44.000 0.00 0.00 39.65 3.16
627 744 4.389077 CGATGACTGAAACTAAACAGACCC 59.611 45.833 0.00 0.00 37.54 4.46
638 755 3.662247 AAACAGACCCTAACTGACGAG 57.338 47.619 0.00 0.00 38.55 4.18
641 758 1.473278 CAGACCCTAACTGACGAGGTC 59.527 57.143 0.00 0.00 46.04 3.85
671 788 3.438360 GTTTTGACAGTTGCAGGTTCAG 58.562 45.455 0.00 0.00 0.00 3.02
674 791 0.861837 GACAGTTGCAGGTTCAGACG 59.138 55.000 0.00 0.00 0.00 4.18
684 801 1.080705 GTTCAGACGGGTCCTGACG 60.081 63.158 4.16 0.00 40.05 4.35
685 802 1.228337 TTCAGACGGGTCCTGACGA 60.228 57.895 4.16 0.00 40.05 4.20
686 803 0.824595 TTCAGACGGGTCCTGACGAA 60.825 55.000 4.16 4.29 40.05 3.85
687 804 1.213013 CAGACGGGTCCTGACGAAG 59.787 63.158 4.16 0.00 33.65 3.79
688 805 2.126031 GACGGGTCCTGACGAAGC 60.126 66.667 4.16 0.00 0.00 3.86
689 806 2.600769 ACGGGTCCTGACGAAGCT 60.601 61.111 4.16 0.00 0.00 3.74
692 809 1.671742 GGGTCCTGACGAAGCTCAA 59.328 57.895 0.00 0.00 0.00 3.02
693 810 0.250513 GGGTCCTGACGAAGCTCAAT 59.749 55.000 0.00 0.00 0.00 2.57
695 812 2.427506 GGTCCTGACGAAGCTCAATTT 58.572 47.619 0.00 0.00 0.00 1.82
696 813 2.416893 GGTCCTGACGAAGCTCAATTTC 59.583 50.000 0.00 0.00 0.00 2.17
698 815 1.740025 CCTGACGAAGCTCAATTTCCC 59.260 52.381 0.00 0.00 0.00 3.97
700 817 1.270625 TGACGAAGCTCAATTTCCCGT 60.271 47.619 0.00 0.00 0.00 5.28
702 819 0.370273 CGAAGCTCAATTTCCCGTCG 59.630 55.000 0.00 0.00 0.00 5.12
705 822 3.089784 CTCAATTTCCCGTCGCCG 58.910 61.111 0.00 0.00 0.00 6.46
706 823 3.095898 CTCAATTTCCCGTCGCCGC 62.096 63.158 0.00 0.00 0.00 6.53
707 824 4.174129 CAATTTCCCGTCGCCGCC 62.174 66.667 0.00 0.00 0.00 6.13
708 825 4.404098 AATTTCCCGTCGCCGCCT 62.404 61.111 0.00 0.00 0.00 5.52
709 826 3.912745 AATTTCCCGTCGCCGCCTT 62.913 57.895 0.00 0.00 0.00 4.35
715 832 4.514577 CGTCGCCGCCTTCCATCT 62.515 66.667 0.00 0.00 0.00 2.90
716 833 2.892425 GTCGCCGCCTTCCATCTG 60.892 66.667 0.00 0.00 0.00 2.90
717 834 3.390521 TCGCCGCCTTCCATCTGT 61.391 61.111 0.00 0.00 0.00 3.41
718 835 2.055633 TCGCCGCCTTCCATCTGTA 61.056 57.895 0.00 0.00 0.00 2.74
719 836 1.069765 CGCCGCCTTCCATCTGTAT 59.930 57.895 0.00 0.00 0.00 2.29
720 837 0.946221 CGCCGCCTTCCATCTGTATC 60.946 60.000 0.00 0.00 0.00 2.24
721 838 0.603975 GCCGCCTTCCATCTGTATCC 60.604 60.000 0.00 0.00 0.00 2.59
722 839 0.319900 CCGCCTTCCATCTGTATCCG 60.320 60.000 0.00 0.00 0.00 4.18
723 840 0.946221 CGCCTTCCATCTGTATCCGC 60.946 60.000 0.00 0.00 0.00 5.54
724 841 0.603975 GCCTTCCATCTGTATCCGCC 60.604 60.000 0.00 0.00 0.00 6.13
725 842 0.319900 CCTTCCATCTGTATCCGCCG 60.320 60.000 0.00 0.00 0.00 6.46
726 843 0.389391 CTTCCATCTGTATCCGCCGT 59.611 55.000 0.00 0.00 0.00 5.68
727 844 0.387929 TTCCATCTGTATCCGCCGTC 59.612 55.000 0.00 0.00 0.00 4.79
728 845 1.371758 CCATCTGTATCCGCCGTCG 60.372 63.158 0.00 0.00 0.00 5.12
729 846 2.016704 CATCTGTATCCGCCGTCGC 61.017 63.158 0.00 0.00 0.00 5.19
730 847 3.208884 ATCTGTATCCGCCGTCGCC 62.209 63.158 0.00 0.00 0.00 5.54
731 848 3.900892 CTGTATCCGCCGTCGCCT 61.901 66.667 0.00 0.00 0.00 5.52
732 849 3.825833 CTGTATCCGCCGTCGCCTC 62.826 68.421 0.00 0.00 0.00 4.70
733 850 3.896133 GTATCCGCCGTCGCCTCA 61.896 66.667 0.00 0.00 0.00 3.86
734 851 3.142162 TATCCGCCGTCGCCTCAA 61.142 61.111 0.00 0.00 0.00 3.02
735 852 3.420214 TATCCGCCGTCGCCTCAAC 62.420 63.158 0.00 0.00 0.00 3.18
740 857 4.796231 CCGTCGCCTCAACTCCCG 62.796 72.222 0.00 0.00 0.00 5.14
741 858 4.796231 CGTCGCCTCAACTCCCGG 62.796 72.222 0.00 0.00 0.00 5.73
760 877 3.827898 GGCGGTCCGAGGTCAGAG 61.828 72.222 17.49 0.00 0.00 3.35
761 878 2.750637 GCGGTCCGAGGTCAGAGA 60.751 66.667 17.49 0.00 0.00 3.10
762 879 2.122167 GCGGTCCGAGGTCAGAGAT 61.122 63.158 17.49 0.00 0.00 2.75
763 880 2.026522 CGGTCCGAGGTCAGAGATC 58.973 63.158 4.91 0.00 0.00 2.75
764 881 0.464735 CGGTCCGAGGTCAGAGATCT 60.465 60.000 4.91 0.00 0.00 2.75
765 882 1.770294 GGTCCGAGGTCAGAGATCTT 58.230 55.000 0.00 0.00 0.00 2.40
766 883 1.407258 GGTCCGAGGTCAGAGATCTTG 59.593 57.143 0.00 0.00 0.00 3.02
767 884 2.096248 GTCCGAGGTCAGAGATCTTGT 58.904 52.381 0.00 0.00 0.00 3.16
768 885 3.280295 GTCCGAGGTCAGAGATCTTGTA 58.720 50.000 0.00 0.00 0.00 2.41
769 886 3.314080 GTCCGAGGTCAGAGATCTTGTAG 59.686 52.174 0.00 0.00 0.00 2.74
770 887 2.034053 CCGAGGTCAGAGATCTTGTAGC 59.966 54.545 0.00 0.00 0.00 3.58
771 888 2.948979 CGAGGTCAGAGATCTTGTAGCT 59.051 50.000 0.00 0.00 0.00 3.32
772 889 3.380004 CGAGGTCAGAGATCTTGTAGCTT 59.620 47.826 0.00 0.00 0.00 3.74
773 890 4.142271 CGAGGTCAGAGATCTTGTAGCTTT 60.142 45.833 0.00 0.00 0.00 3.51
774 891 5.066634 CGAGGTCAGAGATCTTGTAGCTTTA 59.933 44.000 0.00 0.00 0.00 1.85
789 906 1.331756 GCTTTATCCGACCGTCTACGA 59.668 52.381 3.65 0.00 43.02 3.43
833 950 2.753452 GACCTTTTTCCCTTTCCCGATC 59.247 50.000 0.00 0.00 0.00 3.69
870 987 4.778534 TCGAGTCCGATTTCAACTTAGT 57.221 40.909 0.00 0.00 40.30 2.24
906 1023 2.379005 GCAGCCCTTTTATAACTGCCT 58.621 47.619 11.94 0.00 46.21 4.75
907 1024 3.551846 GCAGCCCTTTTATAACTGCCTA 58.448 45.455 11.94 0.00 46.21 3.93
983 1100 4.102996 TGCCTTGGCAGATTATATGACAGA 59.897 41.667 10.65 0.00 36.92 3.41
990 1107 6.105333 GGCAGATTATATGACAGACAGATCC 58.895 44.000 0.00 0.00 32.43 3.36
996 1113 7.674471 TTATATGACAGACAGATCCGTAGAG 57.326 40.000 0.00 0.00 32.43 2.43
1025 1142 2.158813 TGAACCGGAGAATTGATAGCCC 60.159 50.000 9.46 0.00 0.00 5.19
1044 1161 0.602562 CGGAGGAGGAGCAGATGATC 59.397 60.000 0.00 0.00 0.00 2.92
1128 1251 2.418060 GGAGAAGCAGAAGCACCTCTAC 60.418 54.545 0.00 0.00 45.49 2.59
1135 1258 0.898320 GAAGCACCTCTACCTGCTGA 59.102 55.000 0.00 0.00 43.10 4.26
1137 1260 1.118838 AGCACCTCTACCTGCTGATC 58.881 55.000 0.00 0.00 42.29 2.92
1167 1290 1.260544 GCAAAGGCTTCACCCTTCAT 58.739 50.000 0.00 0.00 44.28 2.57
1180 1303 5.500234 TCACCCTTCATAAGATTGACAAGG 58.500 41.667 0.00 0.00 0.00 3.61
1184 1307 5.355350 CCCTTCATAAGATTGACAAGGACAC 59.645 44.000 0.00 0.00 28.79 3.67
1195 1318 5.707242 TGACAAGGACACTAACTACTCTG 57.293 43.478 0.00 0.00 0.00 3.35
1201 1324 3.695556 GGACACTAACTACTCTGACCTCC 59.304 52.174 0.00 0.00 0.00 4.30
1227 1350 1.287425 CTGGCGTTCTCCGGTTAATC 58.713 55.000 0.00 0.00 36.94 1.75
1233 1356 0.108041 TTCTCCGGTTAATCGCACCC 60.108 55.000 1.58 0.00 0.00 4.61
1236 1359 2.457778 CCGGTTAATCGCACCCGTG 61.458 63.158 1.58 0.00 38.79 4.94
1282 1405 1.001020 ATGGGCGGCAACATCTTCA 60.001 52.632 12.47 0.00 0.00 3.02
1285 1408 1.031571 GGGCGGCAACATCTTCATCA 61.032 55.000 12.47 0.00 0.00 3.07
1290 1413 2.440409 GGCAACATCTTCATCACCACT 58.560 47.619 0.00 0.00 0.00 4.00
1300 1423 1.024579 CATCACCACTAACCCACGCC 61.025 60.000 0.00 0.00 0.00 5.68
1312 1435 3.991051 CACGCCGTGGACAGACCT 61.991 66.667 9.90 0.00 39.86 3.85
1332 1455 0.319211 CCAGCCTCGTTTACGACACA 60.319 55.000 0.03 0.00 44.22 3.72
1333 1456 1.060713 CAGCCTCGTTTACGACACAG 58.939 55.000 0.03 0.00 44.22 3.66
1334 1457 0.956633 AGCCTCGTTTACGACACAGA 59.043 50.000 0.03 0.00 44.22 3.41
1335 1458 1.068472 AGCCTCGTTTACGACACAGAG 60.068 52.381 0.03 0.00 44.22 3.35
1336 1459 1.978542 CCTCGTTTACGACACAGAGG 58.021 55.000 0.03 0.00 44.22 3.69
1337 1460 1.337821 CTCGTTTACGACACAGAGGC 58.662 55.000 0.03 0.00 44.22 4.70
1343 1466 2.733218 CGACACAGAGGCGCGAAA 60.733 61.111 12.10 0.00 45.03 3.46
1344 1467 2.307309 CGACACAGAGGCGCGAAAA 61.307 57.895 12.10 0.00 45.03 2.29
1345 1468 1.626654 CGACACAGAGGCGCGAAAAT 61.627 55.000 12.10 0.00 45.03 1.82
1346 1469 1.355971 GACACAGAGGCGCGAAAATA 58.644 50.000 12.10 0.00 0.00 1.40
1347 1470 1.933853 GACACAGAGGCGCGAAAATAT 59.066 47.619 12.10 0.00 0.00 1.28
1348 1471 3.120792 GACACAGAGGCGCGAAAATATA 58.879 45.455 12.10 0.00 0.00 0.86
1349 1472 3.728845 ACACAGAGGCGCGAAAATATAT 58.271 40.909 12.10 0.00 0.00 0.86
1350 1473 4.878439 ACACAGAGGCGCGAAAATATATA 58.122 39.130 12.10 0.00 0.00 0.86
1351 1474 5.294356 ACACAGAGGCGCGAAAATATATAA 58.706 37.500 12.10 0.00 0.00 0.98
1352 1475 5.932303 ACACAGAGGCGCGAAAATATATAAT 59.068 36.000 12.10 0.00 0.00 1.28
1353 1476 7.094631 ACACAGAGGCGCGAAAATATATAATA 58.905 34.615 12.10 0.00 0.00 0.98
1354 1477 7.275779 ACACAGAGGCGCGAAAATATATAATAG 59.724 37.037 12.10 0.00 0.00 1.73
1355 1478 7.488150 CACAGAGGCGCGAAAATATATAATAGA 59.512 37.037 12.10 0.00 0.00 1.98
1356 1479 8.033038 ACAGAGGCGCGAAAATATATAATAGAA 58.967 33.333 12.10 0.00 0.00 2.10
1357 1480 8.321716 CAGAGGCGCGAAAATATATAATAGAAC 58.678 37.037 12.10 0.00 0.00 3.01
1358 1481 8.033038 AGAGGCGCGAAAATATATAATAGAACA 58.967 33.333 12.10 0.00 0.00 3.18
1359 1482 7.960793 AGGCGCGAAAATATATAATAGAACAC 58.039 34.615 12.10 0.00 0.00 3.32
1360 1483 7.064253 AGGCGCGAAAATATATAATAGAACACC 59.936 37.037 12.10 0.00 0.00 4.16
1361 1484 7.064253 GGCGCGAAAATATATAATAGAACACCT 59.936 37.037 12.10 0.00 0.00 4.00
1362 1485 7.898309 GCGCGAAAATATATAATAGAACACCTG 59.102 37.037 12.10 0.00 0.00 4.00
1363 1486 7.898309 CGCGAAAATATATAATAGAACACCTGC 59.102 37.037 0.00 0.00 0.00 4.85
1364 1487 8.717821 GCGAAAATATATAATAGAACACCTGCA 58.282 33.333 0.00 0.00 0.00 4.41
1367 1490 8.863872 AAATATATAATAGAACACCTGCACCC 57.136 34.615 0.00 0.00 0.00 4.61
1368 1491 5.904984 ATATAATAGAACACCTGCACCCA 57.095 39.130 0.00 0.00 0.00 4.51
1369 1492 2.496899 AATAGAACACCTGCACCCAG 57.503 50.000 0.00 0.00 38.85 4.45
1377 1500 4.748144 CTGCACCCAGGCCCTTCC 62.748 72.222 0.00 0.00 35.38 3.46
1379 1502 3.015145 GCACCCAGGCCCTTCCTA 61.015 66.667 0.00 0.00 45.52 2.94
1380 1503 2.386935 GCACCCAGGCCCTTCCTAT 61.387 63.158 0.00 0.00 45.52 2.57
1381 1504 1.839894 CACCCAGGCCCTTCCTATC 59.160 63.158 0.00 0.00 45.52 2.08
1382 1505 0.695803 CACCCAGGCCCTTCCTATCT 60.696 60.000 0.00 0.00 45.52 1.98
1383 1506 0.949582 ACCCAGGCCCTTCCTATCTA 59.050 55.000 0.00 0.00 45.52 1.98
1384 1507 1.132689 ACCCAGGCCCTTCCTATCTAG 60.133 57.143 0.00 0.00 45.52 2.43
1385 1508 0.980423 CCAGGCCCTTCCTATCTAGC 59.020 60.000 0.00 0.00 45.52 3.42
1386 1509 0.980423 CAGGCCCTTCCTATCTAGCC 59.020 60.000 0.00 0.00 45.52 3.93
1387 1510 0.568192 AGGCCCTTCCTATCTAGCCA 59.432 55.000 0.00 0.00 45.41 4.75
1388 1511 1.153132 AGGCCCTTCCTATCTAGCCAT 59.847 52.381 0.00 0.00 45.41 4.40
1389 1512 1.557371 GGCCCTTCCTATCTAGCCATC 59.443 57.143 0.00 0.00 40.20 3.51
1390 1513 1.557371 GCCCTTCCTATCTAGCCATCC 59.443 57.143 0.00 0.00 0.00 3.51
1391 1514 2.907892 CCCTTCCTATCTAGCCATCCA 58.092 52.381 0.00 0.00 0.00 3.41
1392 1515 3.458831 CCCTTCCTATCTAGCCATCCAT 58.541 50.000 0.00 0.00 0.00 3.41
1393 1516 3.848975 CCCTTCCTATCTAGCCATCCATT 59.151 47.826 0.00 0.00 0.00 3.16
1394 1517 4.080638 CCCTTCCTATCTAGCCATCCATTC 60.081 50.000 0.00 0.00 0.00 2.67
1395 1518 4.782156 CCTTCCTATCTAGCCATCCATTCT 59.218 45.833 0.00 0.00 0.00 2.40
1396 1519 5.338219 CCTTCCTATCTAGCCATCCATTCTG 60.338 48.000 0.00 0.00 0.00 3.02
1397 1520 3.517100 TCCTATCTAGCCATCCATTCTGC 59.483 47.826 0.00 0.00 0.00 4.26
1398 1521 2.469274 ATCTAGCCATCCATTCTGCG 57.531 50.000 0.00 0.00 0.00 5.18
1399 1522 0.250038 TCTAGCCATCCATTCTGCGC 60.250 55.000 0.00 0.00 0.00 6.09
1400 1523 0.250209 CTAGCCATCCATTCTGCGCT 60.250 55.000 9.73 0.00 0.00 5.92
1401 1524 0.181114 TAGCCATCCATTCTGCGCTT 59.819 50.000 9.73 0.00 0.00 4.68
1402 1525 1.099879 AGCCATCCATTCTGCGCTTC 61.100 55.000 9.73 0.00 0.00 3.86
1403 1526 1.645455 CCATCCATTCTGCGCTTCG 59.355 57.895 9.73 0.00 0.00 3.79
1404 1527 1.091771 CCATCCATTCTGCGCTTCGT 61.092 55.000 9.73 0.00 0.00 3.85
1405 1528 0.027194 CATCCATTCTGCGCTTCGTG 59.973 55.000 9.73 2.55 0.00 4.35
1406 1529 0.108186 ATCCATTCTGCGCTTCGTGA 60.108 50.000 9.73 0.00 0.00 4.35
1407 1530 0.108186 TCCATTCTGCGCTTCGTGAT 60.108 50.000 9.73 0.00 0.00 3.06
1408 1531 0.729116 CCATTCTGCGCTTCGTGATT 59.271 50.000 9.73 0.00 0.00 2.57
1409 1532 1.267732 CCATTCTGCGCTTCGTGATTC 60.268 52.381 9.73 0.00 0.00 2.52
1410 1533 0.647410 ATTCTGCGCTTCGTGATTCG 59.353 50.000 9.73 0.00 41.41 3.34
1411 1534 0.666274 TTCTGCGCTTCGTGATTCGT 60.666 50.000 9.73 0.00 40.80 3.85
1412 1535 1.057822 CTGCGCTTCGTGATTCGTG 59.942 57.895 9.73 0.00 40.80 4.35
1413 1536 2.276058 GCGCTTCGTGATTCGTGC 60.276 61.111 0.00 0.00 40.80 5.34
1414 1537 3.010585 GCGCTTCGTGATTCGTGCA 62.011 57.895 0.00 0.00 40.80 4.57
1415 1538 1.491127 CGCTTCGTGATTCGTGCAA 59.509 52.632 0.00 0.00 40.80 4.08
1416 1539 0.110867 CGCTTCGTGATTCGTGCAAA 60.111 50.000 0.00 0.00 40.80 3.68
1417 1540 1.318251 GCTTCGTGATTCGTGCAAAC 58.682 50.000 0.00 0.00 40.80 2.93
1418 1541 1.333702 GCTTCGTGATTCGTGCAAACA 60.334 47.619 0.00 0.00 40.80 2.83
1419 1542 2.298300 CTTCGTGATTCGTGCAAACAC 58.702 47.619 0.00 0.00 43.76 3.32
1453 1576 7.621832 TTTTGTTTCTCTCGCATAAAACATG 57.378 32.000 0.00 0.00 40.25 3.21
1454 1577 5.940192 TGTTTCTCTCGCATAAAACATGT 57.060 34.783 0.00 0.00 36.86 3.21
1455 1578 6.312399 TGTTTCTCTCGCATAAAACATGTT 57.688 33.333 4.92 4.92 36.86 2.71
1456 1579 6.734137 TGTTTCTCTCGCATAAAACATGTTT 58.266 32.000 18.13 18.13 36.86 2.83
1457 1580 7.199766 TGTTTCTCTCGCATAAAACATGTTTT 58.800 30.769 32.63 32.63 44.16 2.43
1458 1581 7.167302 TGTTTCTCTCGCATAAAACATGTTTTG 59.833 33.333 35.69 25.85 42.18 2.44
1459 1582 6.552859 TCTCTCGCATAAAACATGTTTTGA 57.447 33.333 35.69 25.63 42.18 2.69
1460 1583 6.964908 TCTCTCGCATAAAACATGTTTTGAA 58.035 32.000 35.69 23.00 42.18 2.69
1461 1584 7.421599 TCTCTCGCATAAAACATGTTTTGAAA 58.578 30.769 35.69 22.38 42.18 2.69
1462 1585 8.081633 TCTCTCGCATAAAACATGTTTTGAAAT 58.918 29.630 35.69 23.38 42.18 2.17
1463 1586 8.586570 TCTCGCATAAAACATGTTTTGAAATT 57.413 26.923 35.69 18.40 42.18 1.82
1464 1587 8.698854 TCTCGCATAAAACATGTTTTGAAATTC 58.301 29.630 35.69 20.20 42.18 2.17
1465 1588 8.357796 TCGCATAAAACATGTTTTGAAATTCA 57.642 26.923 35.69 20.54 42.18 2.57
1466 1589 8.820933 TCGCATAAAACATGTTTTGAAATTCAA 58.179 25.926 35.69 19.92 42.18 2.69
1467 1590 9.430838 CGCATAAAACATGTTTTGAAATTCAAA 57.569 25.926 35.69 19.32 43.84 2.69
1473 1596 9.623350 AAACATGTTTTGAAATTCAAACCTTTG 57.377 25.926 19.44 15.80 45.03 2.77
1474 1597 7.249858 ACATGTTTTGAAATTCAAACCTTTGC 58.750 30.769 19.44 7.66 45.03 3.68
1475 1598 6.808008 TGTTTTGAAATTCAAACCTTTGCA 57.192 29.167 19.44 9.71 45.03 4.08
1476 1599 6.840075 TGTTTTGAAATTCAAACCTTTGCAG 58.160 32.000 19.44 0.00 45.03 4.41
1477 1600 5.482686 TTTGAAATTCAAACCTTTGCAGC 57.517 34.783 16.28 0.00 41.02 5.25
1478 1601 3.122297 TGAAATTCAAACCTTTGCAGCG 58.878 40.909 0.00 0.00 38.05 5.18
1479 1602 2.888834 AATTCAAACCTTTGCAGCGT 57.111 40.000 0.00 0.00 38.05 5.07
1480 1603 2.138596 ATTCAAACCTTTGCAGCGTG 57.861 45.000 0.00 0.00 38.05 5.34
1481 1604 0.102120 TTCAAACCTTTGCAGCGTGG 59.898 50.000 0.00 0.00 38.05 4.94
1482 1605 1.950630 CAAACCTTTGCAGCGTGGC 60.951 57.895 0.00 0.00 0.00 5.01
1483 1606 2.422231 AAACCTTTGCAGCGTGGCA 61.422 52.632 0.00 0.00 43.19 4.92
1489 1612 3.218470 TGCAGCGTGGCAAAGCTT 61.218 55.556 14.91 0.00 39.27 3.74
1490 1613 2.028043 GCAGCGTGGCAAAGCTTT 59.972 55.556 14.91 5.69 39.27 3.51
1491 1614 2.018324 GCAGCGTGGCAAAGCTTTC 61.018 57.895 9.23 4.47 39.27 2.62
1492 1615 1.656441 CAGCGTGGCAAAGCTTTCT 59.344 52.632 9.23 0.00 39.27 2.52
1493 1616 0.874390 CAGCGTGGCAAAGCTTTCTA 59.126 50.000 9.23 0.00 39.27 2.10
1494 1617 1.470098 CAGCGTGGCAAAGCTTTCTAT 59.530 47.619 9.23 0.00 39.27 1.98
1495 1618 1.740025 AGCGTGGCAAAGCTTTCTATC 59.260 47.619 9.23 0.00 37.97 2.08
1496 1619 1.740025 GCGTGGCAAAGCTTTCTATCT 59.260 47.619 9.23 0.00 0.00 1.98
1497 1620 2.936498 GCGTGGCAAAGCTTTCTATCTA 59.064 45.455 9.23 0.00 0.00 1.98
1498 1621 3.374058 GCGTGGCAAAGCTTTCTATCTAA 59.626 43.478 9.23 0.00 0.00 2.10
1499 1622 4.142687 GCGTGGCAAAGCTTTCTATCTAAA 60.143 41.667 9.23 0.00 0.00 1.85
1500 1623 5.619086 GCGTGGCAAAGCTTTCTATCTAAAA 60.619 40.000 9.23 0.00 0.00 1.52
1501 1624 6.555315 CGTGGCAAAGCTTTCTATCTAAAAT 58.445 36.000 9.23 0.00 0.00 1.82
1502 1625 6.688813 CGTGGCAAAGCTTTCTATCTAAAATC 59.311 38.462 9.23 0.00 0.00 2.17
1503 1626 7.414540 CGTGGCAAAGCTTTCTATCTAAAATCT 60.415 37.037 9.23 0.00 0.00 2.40
1504 1627 8.893727 GTGGCAAAGCTTTCTATCTAAAATCTA 58.106 33.333 9.23 0.00 0.00 1.98
1505 1628 9.113838 TGGCAAAGCTTTCTATCTAAAATCTAG 57.886 33.333 9.23 0.00 0.00 2.43
1506 1629 8.563732 GGCAAAGCTTTCTATCTAAAATCTAGG 58.436 37.037 9.23 0.00 0.00 3.02
1507 1630 9.331282 GCAAAGCTTTCTATCTAAAATCTAGGA 57.669 33.333 9.23 0.00 0.00 2.94
1557 1680 7.763172 ATTCTAGATAGAAAGCTTTGTCACG 57.237 36.000 18.30 7.11 44.63 4.35
1558 1681 5.103000 TCTAGATAGAAAGCTTTGTCACGC 58.897 41.667 18.30 0.25 0.00 5.34
1559 1682 3.931578 AGATAGAAAGCTTTGTCACGCT 58.068 40.909 18.30 8.71 38.30 5.07
1560 1683 3.681897 AGATAGAAAGCTTTGTCACGCTG 59.318 43.478 18.30 0.00 36.45 5.18
1561 1684 0.308993 AGAAAGCTTTGTCACGCTGC 59.691 50.000 18.30 0.00 36.45 5.25
1562 1685 0.029300 GAAAGCTTTGTCACGCTGCA 59.971 50.000 18.30 0.00 36.45 4.41
1563 1686 0.455410 AAAGCTTTGTCACGCTGCAA 59.545 45.000 11.80 0.00 36.45 4.08
1564 1687 0.455410 AAGCTTTGTCACGCTGCAAA 59.545 45.000 0.00 0.00 36.45 3.68
1566 1689 0.936297 GCTTTGTCACGCTGCAAAGG 60.936 55.000 20.17 8.59 46.77 3.11
1567 1690 0.381801 CTTTGTCACGCTGCAAAGGT 59.618 50.000 14.49 0.00 44.46 3.50
1568 1691 0.814457 TTTGTCACGCTGCAAAGGTT 59.186 45.000 0.00 0.00 31.82 3.50
1569 1692 0.814457 TTGTCACGCTGCAAAGGTTT 59.186 45.000 0.00 0.00 0.00 3.27
1570 1693 0.100325 TGTCACGCTGCAAAGGTTTG 59.900 50.000 0.00 0.00 41.03 2.93
1571 1694 0.380378 GTCACGCTGCAAAGGTTTGA 59.620 50.000 6.63 0.00 40.55 2.69
1572 1695 1.098869 TCACGCTGCAAAGGTTTGAA 58.901 45.000 6.63 0.00 40.55 2.69
1573 1696 1.680735 TCACGCTGCAAAGGTTTGAAT 59.319 42.857 6.63 0.00 40.55 2.57
1574 1697 2.100584 TCACGCTGCAAAGGTTTGAATT 59.899 40.909 6.63 0.00 40.55 2.17
1575 1698 2.219216 CACGCTGCAAAGGTTTGAATTG 59.781 45.455 6.63 0.00 40.55 2.32
1592 1715 8.557869 TTTGAATTGCAAAACATGTTTTATGC 57.442 26.923 30.65 29.69 43.18 3.14
1593 1716 6.361114 TGAATTGCAAAACATGTTTTATGCG 58.639 32.000 30.65 20.99 40.45 4.73
1594 1717 6.201615 TGAATTGCAAAACATGTTTTATGCGA 59.798 30.769 30.65 29.14 40.45 5.10
1595 1718 5.573296 TTGCAAAACATGTTTTATGCGAG 57.427 34.783 30.65 20.07 40.45 5.03
1596 1719 4.864633 TGCAAAACATGTTTTATGCGAGA 58.135 34.783 30.65 16.27 40.45 4.04
1597 1720 4.916831 TGCAAAACATGTTTTATGCGAGAG 59.083 37.500 30.65 18.86 40.45 3.20
1598 1721 5.153513 GCAAAACATGTTTTATGCGAGAGA 58.846 37.500 30.65 0.00 40.45 3.10
1599 1722 5.629020 GCAAAACATGTTTTATGCGAGAGAA 59.371 36.000 30.65 0.00 40.45 2.87
1600 1723 6.143758 GCAAAACATGTTTTATGCGAGAGAAA 59.856 34.615 30.65 0.00 40.45 2.52
1601 1724 7.493313 CAAAACATGTTTTATGCGAGAGAAAC 58.507 34.615 30.65 0.00 40.45 2.78
1602 1725 5.940192 ACATGTTTTATGCGAGAGAAACA 57.060 34.783 0.00 9.07 43.56 2.83
1603 1726 6.312399 ACATGTTTTATGCGAGAGAAACAA 57.688 33.333 0.00 0.00 42.93 2.83
1604 1727 6.734137 ACATGTTTTATGCGAGAGAAACAAA 58.266 32.000 0.00 0.00 42.93 2.83
1605 1728 7.199766 ACATGTTTTATGCGAGAGAAACAAAA 58.800 30.769 0.00 0.00 42.93 2.44
1606 1729 7.704472 ACATGTTTTATGCGAGAGAAACAAAAA 59.296 29.630 0.00 0.00 42.93 1.94
1637 1760 8.850454 TTCAGATAAAAAGTTAGTTGTGTTGC 57.150 30.769 0.00 0.00 0.00 4.17
1638 1761 7.990917 TCAGATAAAAAGTTAGTTGTGTTGCA 58.009 30.769 0.00 0.00 0.00 4.08
1639 1762 7.913297 TCAGATAAAAAGTTAGTTGTGTTGCAC 59.087 33.333 0.00 0.00 34.56 4.57
1640 1763 7.700234 CAGATAAAAAGTTAGTTGTGTTGCACA 59.300 33.333 0.00 0.00 43.02 4.57
1641 1764 7.915397 AGATAAAAAGTTAGTTGTGTTGCACAG 59.085 33.333 2.17 0.00 45.39 3.66
1642 1765 5.637006 AAAAGTTAGTTGTGTTGCACAGA 57.363 34.783 2.17 0.00 45.39 3.41
1643 1766 5.835113 AAAGTTAGTTGTGTTGCACAGAT 57.165 34.783 2.17 0.00 45.39 2.90
1644 1767 5.424121 AAGTTAGTTGTGTTGCACAGATC 57.576 39.130 2.17 0.00 45.39 2.75
1645 1768 4.708177 AGTTAGTTGTGTTGCACAGATCT 58.292 39.130 2.17 0.00 45.39 2.75
1646 1769 5.126067 AGTTAGTTGTGTTGCACAGATCTT 58.874 37.500 0.00 0.00 45.39 2.40
1647 1770 6.288294 AGTTAGTTGTGTTGCACAGATCTTA 58.712 36.000 0.00 0.00 45.39 2.10
1648 1771 6.765989 AGTTAGTTGTGTTGCACAGATCTTAA 59.234 34.615 0.00 0.00 45.39 1.85
1649 1772 7.282224 AGTTAGTTGTGTTGCACAGATCTTAAA 59.718 33.333 0.00 0.00 45.39 1.52
1650 1773 6.449635 AGTTGTGTTGCACAGATCTTAAAA 57.550 33.333 0.00 0.00 45.39 1.52
1651 1774 6.265577 AGTTGTGTTGCACAGATCTTAAAAC 58.734 36.000 0.00 0.00 45.39 2.43
1652 1775 5.826601 TGTGTTGCACAGATCTTAAAACA 57.173 34.783 0.00 0.00 39.62 2.83
1653 1776 6.201226 TGTGTTGCACAGATCTTAAAACAA 57.799 33.333 10.15 1.89 39.62 2.83
1654 1777 6.804677 TGTGTTGCACAGATCTTAAAACAAT 58.195 32.000 10.15 0.00 39.62 2.71
1655 1778 7.935520 TGTGTTGCACAGATCTTAAAACAATA 58.064 30.769 10.15 0.85 39.62 1.90
1656 1779 8.575589 TGTGTTGCACAGATCTTAAAACAATAT 58.424 29.630 10.15 0.00 39.62 1.28
1657 1780 9.410556 GTGTTGCACAGATCTTAAAACAATATT 57.589 29.630 10.15 0.00 34.08 1.28
1658 1781 9.409312 TGTTGCACAGATCTTAAAACAATATTG 57.591 29.630 14.01 14.01 0.00 1.90
1659 1782 8.863049 GTTGCACAGATCTTAAAACAATATTGG 58.137 33.333 19.37 0.92 0.00 3.16
1660 1783 8.347004 TGCACAGATCTTAAAACAATATTGGA 57.653 30.769 19.37 6.37 0.00 3.53
1661 1784 8.243426 TGCACAGATCTTAAAACAATATTGGAC 58.757 33.333 19.37 2.31 0.00 4.02
1662 1785 8.243426 GCACAGATCTTAAAACAATATTGGACA 58.757 33.333 19.37 0.00 0.00 4.02
1663 1786 9.778993 CACAGATCTTAAAACAATATTGGACAG 57.221 33.333 19.37 7.93 0.00 3.51
1664 1787 9.520515 ACAGATCTTAAAACAATATTGGACAGT 57.479 29.630 19.37 3.07 0.00 3.55
1673 1796 8.451908 AAACAATATTGGACAGTTAGGATAGC 57.548 34.615 19.37 0.00 0.00 2.97
1674 1797 7.136822 ACAATATTGGACAGTTAGGATAGCA 57.863 36.000 19.37 0.00 0.00 3.49
1675 1798 7.220030 ACAATATTGGACAGTTAGGATAGCAG 58.780 38.462 19.37 0.00 0.00 4.24
1676 1799 4.696479 ATTGGACAGTTAGGATAGCAGG 57.304 45.455 0.00 0.00 0.00 4.85
1677 1800 2.398588 TGGACAGTTAGGATAGCAGGG 58.601 52.381 0.00 0.00 0.00 4.45
1678 1801 1.070914 GGACAGTTAGGATAGCAGGGC 59.929 57.143 0.00 0.00 0.00 5.19
1679 1802 1.070914 GACAGTTAGGATAGCAGGGCC 59.929 57.143 0.00 0.00 0.00 5.80
1680 1803 0.398318 CAGTTAGGATAGCAGGGCCC 59.602 60.000 16.46 16.46 0.00 5.80
1681 1804 1.122019 AGTTAGGATAGCAGGGCCCG 61.122 60.000 18.44 13.02 0.00 6.13
1682 1805 1.841556 TTAGGATAGCAGGGCCCGG 60.842 63.158 18.94 18.94 0.00 5.73
1683 1806 3.846405 TAGGATAGCAGGGCCCGGG 62.846 68.421 24.36 19.09 0.00 5.73
1685 1808 4.256180 GATAGCAGGGCCCGGGTG 62.256 72.222 33.39 20.26 0.00 4.61
1693 1816 4.740822 GGCCCGGGTGCAGATGTT 62.741 66.667 24.63 0.00 0.00 2.71
1694 1817 2.676471 GCCCGGGTGCAGATGTTT 60.676 61.111 24.63 0.00 0.00 2.83
1695 1818 2.275380 GCCCGGGTGCAGATGTTTT 61.275 57.895 24.63 0.00 0.00 2.43
1696 1819 0.963355 GCCCGGGTGCAGATGTTTTA 60.963 55.000 24.63 0.00 0.00 1.52
1697 1820 1.540267 CCCGGGTGCAGATGTTTTAA 58.460 50.000 14.18 0.00 0.00 1.52
1698 1821 1.889829 CCCGGGTGCAGATGTTTTAAA 59.110 47.619 14.18 0.00 0.00 1.52
1699 1822 2.297597 CCCGGGTGCAGATGTTTTAAAA 59.702 45.455 14.18 0.00 0.00 1.52
1700 1823 3.243907 CCCGGGTGCAGATGTTTTAAAAA 60.244 43.478 14.18 0.00 0.00 1.94
1701 1824 4.562552 CCCGGGTGCAGATGTTTTAAAAAT 60.563 41.667 14.18 0.00 0.00 1.82
1702 1825 4.994217 CCGGGTGCAGATGTTTTAAAAATT 59.006 37.500 1.31 0.00 0.00 1.82
1703 1826 5.120053 CCGGGTGCAGATGTTTTAAAAATTC 59.880 40.000 1.31 3.02 0.00 2.17
1704 1827 5.694006 CGGGTGCAGATGTTTTAAAAATTCA 59.306 36.000 1.31 0.00 0.00 2.57
1705 1828 6.346518 CGGGTGCAGATGTTTTAAAAATTCAC 60.347 38.462 1.31 5.58 0.00 3.18
1706 1829 6.346518 GGGTGCAGATGTTTTAAAAATTCACG 60.347 38.462 1.31 0.63 0.00 4.35
1707 1830 6.200097 GGTGCAGATGTTTTAAAAATTCACGT 59.800 34.615 1.31 0.00 0.00 4.49
1708 1831 7.273659 GTGCAGATGTTTTAAAAATTCACGTC 58.726 34.615 1.31 1.92 0.00 4.34
1709 1832 7.167468 GTGCAGATGTTTTAAAAATTCACGTCT 59.833 33.333 1.31 4.23 34.67 4.18
1710 1833 7.704472 TGCAGATGTTTTAAAAATTCACGTCTT 59.296 29.630 1.31 0.00 32.50 3.01
1711 1834 9.176181 GCAGATGTTTTAAAAATTCACGTCTTA 57.824 29.630 1.31 0.00 32.50 2.10
1762 1885 2.847234 TCCCGGAACCACTGCTGT 60.847 61.111 0.73 0.00 0.00 4.40
1793 1916 2.983030 TGTTGCCACCACCGATGC 60.983 61.111 0.00 0.00 0.00 3.91
1800 1923 1.521457 CACCACCGATGCGCTGTAT 60.521 57.895 9.73 0.00 0.00 2.29
1821 1944 1.543802 GCATTCCCATGTTTCGTCCAA 59.456 47.619 0.00 0.00 32.28 3.53
1842 1965 0.601311 ACACGCAGCAGGACTTCTTC 60.601 55.000 0.00 0.00 0.00 2.87
1856 1979 0.400213 TTCTTCCAGGCCATGTCGTT 59.600 50.000 5.01 0.00 0.00 3.85
1962 2088 1.202582 ACCAAGGAAGTCATCGACTCG 59.797 52.381 0.00 0.00 42.59 4.18
1974 2100 2.434134 CGACTCGTACGCCTTGCAC 61.434 63.158 11.24 0.00 0.00 4.57
2000 2126 1.066430 TGGACGCACCATCTTCCTAAC 60.066 52.381 0.00 0.00 44.64 2.34
2062 2188 1.406069 CCATGTCCACCTTCTCCTTCG 60.406 57.143 0.00 0.00 0.00 3.79
2311 2437 1.296392 CCAATGGACGCCACTCTCA 59.704 57.895 0.00 0.00 35.80 3.27
2359 2487 1.801913 GTGGAGTGTGCTACGCGAG 60.802 63.158 15.93 7.21 33.01 5.03
2365 2493 2.102553 GTGCTACGCGAGGGAGTC 59.897 66.667 15.93 1.84 0.00 3.36
2386 2514 2.159517 CGAGTACAAGGATGCTTTTGGC 60.160 50.000 0.00 0.00 42.22 4.52
2395 2523 1.852067 ATGCTTTTGGCGACCGTGAC 61.852 55.000 0.00 0.00 45.43 3.67
2441 2569 2.785868 GGCCTCAAGTACAGCCATG 58.214 57.895 0.00 0.00 45.07 3.66
2479 2610 3.129813 TGAACCGCATCACTAACTCGTAT 59.870 43.478 0.00 0.00 0.00 3.06
2488 2619 7.570691 CGCATCACTAACTCGTATATAGTGTCA 60.571 40.741 10.83 0.00 44.30 3.58
2496 2627 5.692204 ACTCGTATATAGTGTCAAAGCATGC 59.308 40.000 10.51 10.51 0.00 4.06
2500 2631 0.323360 TAGTGTCAAAGCATGCCCCC 60.323 55.000 15.66 0.00 0.00 5.40
2513 2644 1.977009 GCCCCCTTGTTTTCTCCCG 60.977 63.158 0.00 0.00 0.00 5.14
2543 2674 4.340666 TCTGGATGTAGAAGAAGCTGCTAG 59.659 45.833 0.90 0.00 0.00 3.42
2544 2675 4.026744 TGGATGTAGAAGAAGCTGCTAGT 58.973 43.478 0.90 0.00 0.00 2.57
2545 2676 5.201243 TGGATGTAGAAGAAGCTGCTAGTA 58.799 41.667 0.90 0.00 0.00 1.82
2546 2677 5.300539 TGGATGTAGAAGAAGCTGCTAGTAG 59.699 44.000 0.90 3.05 0.00 2.57
2618 2749 1.073923 ACTATGGGCCGAATGGAATCC 59.926 52.381 7.32 0.00 37.49 3.01
2627 2758 3.609853 CCGAATGGAATCCTTTCAGTGA 58.390 45.455 22.48 0.00 37.48 3.41
2694 2834 6.821388 AGGTCACTACACATATGGAAGATTC 58.179 40.000 7.80 0.00 0.00 2.52
2695 2835 5.692204 GGTCACTACACATATGGAAGATTCG 59.308 44.000 7.80 0.00 0.00 3.34
2703 2843 5.520288 CACATATGGAAGATTCGAGTTTCGT 59.480 40.000 7.80 0.00 41.35 3.85
2791 2932 6.459670 AAAAACAAGTTGGATCGGTAACTT 57.540 33.333 7.96 12.74 45.25 2.66
2793 2934 3.323243 ACAAGTTGGATCGGTAACTTCG 58.677 45.455 14.64 12.99 43.23 3.79
2798 2939 1.202486 TGGATCGGTAACTTCGGATGC 60.202 52.381 0.00 0.00 36.56 3.91
2866 3008 7.064134 CGAGTGTCCACTTGCAAAACTATTATA 59.936 37.037 0.00 0.00 42.66 0.98
2926 3068 5.849357 ACGAGCATAAACACGTTATTTGA 57.151 34.783 5.07 0.00 32.91 2.69
2935 3077 4.893424 ACACGTTATTTGATACATGGCC 57.107 40.909 0.00 0.00 0.00 5.36
2999 3141 3.455910 AGATATGAGCACTACTTTGGGCA 59.544 43.478 0.00 0.00 0.00 5.36
3109 3251 4.993905 TGTATGTGGTCATTACTCACTCG 58.006 43.478 0.00 0.00 35.70 4.18
3114 3256 7.742294 TATGTGGTCATTACTCACTCGTGTGA 61.742 42.308 18.43 18.43 41.38 3.58
3124 3266 1.293498 CTCGTGTGAACTCCAGGGG 59.707 63.158 0.00 0.00 0.00 4.79
3127 3269 3.256960 TGTGAACTCCAGGGGGCC 61.257 66.667 0.00 0.00 0.00 5.80
3189 3331 2.545946 GCTATCTTCAGCCGATTTGGAC 59.454 50.000 0.00 0.00 42.00 4.02
3211 3353 3.729462 CGACGAGCTGATAATAGGCTAGC 60.729 52.174 6.04 6.04 36.37 3.42
3371 3513 2.615227 GATTGATGCAGAGGCCGGGT 62.615 60.000 2.18 0.00 40.13 5.28
3372 3514 2.215451 ATTGATGCAGAGGCCGGGTT 62.215 55.000 2.18 0.00 40.13 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.063312 CACAAACGGTTGAAGCATTTTCTTT 59.937 36.000 22.35 0.00 38.20 2.52
55 56 4.358851 TGGATGAAGCTTTTTCACAAACG 58.641 39.130 0.00 0.00 0.00 3.60
63 64 6.976934 TCCTTTAGTTGGATGAAGCTTTTT 57.023 33.333 0.00 0.00 0.00 1.94
78 79 6.183360 GCCACTCTTGAAACTTTTCCTTTAGT 60.183 38.462 0.00 0.00 36.36 2.24
82 83 4.023291 TGCCACTCTTGAAACTTTTCCTT 58.977 39.130 0.00 0.00 36.36 3.36
105 106 2.159382 GCGGTGGAAGATTTTTCCTCA 58.841 47.619 7.43 0.00 39.31 3.86
123 124 1.059942 GTTTGATGCTTTTTCCCGCG 58.940 50.000 0.00 0.00 0.00 6.46
128 129 9.719279 TTTTTCATTGATGTTTGATGCTTTTTC 57.281 25.926 0.00 0.00 0.00 2.29
136 137 8.553696 GTTGAAGCTTTTTCATTGATGTTTGAT 58.446 29.630 0.00 0.00 0.00 2.57
143 144 3.989817 GCGGTTGAAGCTTTTTCATTGAT 59.010 39.130 0.00 0.00 0.00 2.57
144 145 3.380142 GCGGTTGAAGCTTTTTCATTGA 58.620 40.909 0.00 0.00 0.00 2.57
202 203 1.302949 CCGGCTCCCCTGATTGAAA 59.697 57.895 0.00 0.00 0.00 2.69
405 520 0.396695 TCGTCCCGGGCTTCTTCTAT 60.397 55.000 18.49 0.00 0.00 1.98
437 554 3.446570 GTGGCCACTGGATGCAGC 61.447 66.667 29.12 0.71 0.00 5.25
468 585 1.222113 GGTCCAGCCCTAGCAGTTC 59.778 63.158 0.00 0.00 43.56 3.01
471 588 3.854669 CCGGTCCAGCCCTAGCAG 61.855 72.222 0.00 0.00 43.56 4.24
490 607 1.890041 CACCGGCCGAACAGTTTCA 60.890 57.895 30.73 0.00 0.00 2.69
561 678 8.754080 TCCGACCAATATTATGTTTCCAAAAAT 58.246 29.630 0.00 0.00 0.00 1.82
562 679 8.030106 GTCCGACCAATATTATGTTTCCAAAAA 58.970 33.333 0.00 0.00 0.00 1.94
563 680 7.363094 GGTCCGACCAATATTATGTTTCCAAAA 60.363 37.037 13.05 0.00 38.42 2.44
564 681 6.095720 GGTCCGACCAATATTATGTTTCCAAA 59.904 38.462 13.05 0.00 38.42 3.28
565 682 5.591067 GGTCCGACCAATATTATGTTTCCAA 59.409 40.000 13.05 0.00 38.42 3.53
566 683 5.127491 GGTCCGACCAATATTATGTTTCCA 58.873 41.667 13.05 0.00 38.42 3.53
567 684 4.517832 GGGTCCGACCAATATTATGTTTCC 59.482 45.833 19.43 0.00 41.02 3.13
568 685 4.212636 CGGGTCCGACCAATATTATGTTTC 59.787 45.833 19.43 0.00 41.02 2.78
569 686 4.131596 CGGGTCCGACCAATATTATGTTT 58.868 43.478 19.43 0.00 41.02 2.83
570 687 3.135167 ACGGGTCCGACCAATATTATGTT 59.865 43.478 19.43 0.00 41.02 2.71
571 688 2.701951 ACGGGTCCGACCAATATTATGT 59.298 45.455 19.43 1.81 41.02 2.29
572 689 3.064207 CACGGGTCCGACCAATATTATG 58.936 50.000 19.43 2.83 41.02 1.90
573 690 2.038033 CCACGGGTCCGACCAATATTAT 59.962 50.000 19.43 0.00 41.02 1.28
574 691 1.413445 CCACGGGTCCGACCAATATTA 59.587 52.381 19.43 0.00 41.02 0.98
575 692 0.179468 CCACGGGTCCGACCAATATT 59.821 55.000 19.43 0.00 41.02 1.28
576 693 1.827394 CCACGGGTCCGACCAATAT 59.173 57.895 19.43 0.00 41.02 1.28
577 694 3.021473 GCCACGGGTCCGACCAATA 62.021 63.158 19.43 0.00 41.02 1.90
578 695 4.404098 GCCACGGGTCCGACCAAT 62.404 66.667 19.43 3.44 41.02 3.16
581 698 4.404098 AATGCCACGGGTCCGACC 62.404 66.667 16.90 9.30 42.83 4.79
582 699 2.818274 GAATGCCACGGGTCCGAC 60.818 66.667 16.90 5.74 42.83 4.79
583 700 4.090588 GGAATGCCACGGGTCCGA 62.091 66.667 16.90 0.00 42.83 4.55
585 702 3.912745 AACGGAATGCCACGGGTCC 62.913 63.158 0.00 0.00 0.00 4.46
586 703 2.359478 AACGGAATGCCACGGGTC 60.359 61.111 0.00 0.00 0.00 4.46
587 704 2.359478 GAACGGAATGCCACGGGT 60.359 61.111 0.00 0.00 0.00 5.28
588 705 3.496131 CGAACGGAATGCCACGGG 61.496 66.667 0.00 0.00 0.00 5.28
589 706 1.813753 ATCGAACGGAATGCCACGG 60.814 57.895 0.00 0.00 0.00 4.94
590 707 1.081556 TCATCGAACGGAATGCCACG 61.082 55.000 0.00 0.00 0.00 4.94
591 708 0.373716 GTCATCGAACGGAATGCCAC 59.626 55.000 0.00 0.00 0.00 5.01
592 709 0.249120 AGTCATCGAACGGAATGCCA 59.751 50.000 0.00 0.00 0.00 4.92
593 710 0.652592 CAGTCATCGAACGGAATGCC 59.347 55.000 0.00 0.00 0.00 4.40
594 711 1.640428 TCAGTCATCGAACGGAATGC 58.360 50.000 7.42 0.00 0.00 3.56
595 712 3.679980 AGTTTCAGTCATCGAACGGAATG 59.320 43.478 4.09 5.25 34.17 2.67
596 713 3.926616 AGTTTCAGTCATCGAACGGAAT 58.073 40.909 4.09 0.00 34.17 3.01
597 714 3.380479 AGTTTCAGTCATCGAACGGAA 57.620 42.857 0.00 0.00 32.62 4.30
598 715 4.508461 TTAGTTTCAGTCATCGAACGGA 57.492 40.909 0.00 0.00 0.00 4.69
599 716 4.446385 TGTTTAGTTTCAGTCATCGAACGG 59.554 41.667 0.00 0.00 0.00 4.44
600 717 5.401376 TCTGTTTAGTTTCAGTCATCGAACG 59.599 40.000 0.00 0.00 33.89 3.95
601 718 6.346678 GGTCTGTTTAGTTTCAGTCATCGAAC 60.347 42.308 0.00 0.00 33.89 3.95
602 719 5.694910 GGTCTGTTTAGTTTCAGTCATCGAA 59.305 40.000 0.00 0.00 33.89 3.71
603 720 5.227908 GGTCTGTTTAGTTTCAGTCATCGA 58.772 41.667 0.00 0.00 33.89 3.59
604 721 4.389077 GGGTCTGTTTAGTTTCAGTCATCG 59.611 45.833 0.00 0.00 33.89 3.84
605 722 5.552178 AGGGTCTGTTTAGTTTCAGTCATC 58.448 41.667 0.00 0.00 33.89 2.92
606 723 5.568620 AGGGTCTGTTTAGTTTCAGTCAT 57.431 39.130 0.00 0.00 33.89 3.06
607 724 6.099269 AGTTAGGGTCTGTTTAGTTTCAGTCA 59.901 38.462 0.00 0.00 33.89 3.41
608 725 6.424207 CAGTTAGGGTCTGTTTAGTTTCAGTC 59.576 42.308 0.00 0.00 33.89 3.51
609 726 6.099269 TCAGTTAGGGTCTGTTTAGTTTCAGT 59.901 38.462 0.00 0.00 34.86 3.41
610 727 6.424207 GTCAGTTAGGGTCTGTTTAGTTTCAG 59.576 42.308 0.00 0.00 34.86 3.02
611 728 6.285990 GTCAGTTAGGGTCTGTTTAGTTTCA 58.714 40.000 0.00 0.00 34.86 2.69
612 729 5.404667 CGTCAGTTAGGGTCTGTTTAGTTTC 59.595 44.000 0.00 0.00 34.86 2.78
613 730 5.069516 TCGTCAGTTAGGGTCTGTTTAGTTT 59.930 40.000 0.00 0.00 34.86 2.66
614 731 4.586001 TCGTCAGTTAGGGTCTGTTTAGTT 59.414 41.667 0.00 0.00 34.86 2.24
615 732 4.147321 TCGTCAGTTAGGGTCTGTTTAGT 58.853 43.478 0.00 0.00 34.86 2.24
616 733 4.380655 CCTCGTCAGTTAGGGTCTGTTTAG 60.381 50.000 0.00 0.00 34.86 1.85
617 734 3.508793 CCTCGTCAGTTAGGGTCTGTTTA 59.491 47.826 0.00 0.00 34.86 2.01
618 735 2.299297 CCTCGTCAGTTAGGGTCTGTTT 59.701 50.000 0.00 0.00 34.86 2.83
619 736 1.893801 CCTCGTCAGTTAGGGTCTGTT 59.106 52.381 0.00 0.00 34.86 3.16
620 737 1.203025 ACCTCGTCAGTTAGGGTCTGT 60.203 52.381 0.00 0.00 37.18 3.41
621 738 1.473278 GACCTCGTCAGTTAGGGTCTG 59.527 57.143 0.00 0.00 42.04 3.51
622 739 1.836802 GACCTCGTCAGTTAGGGTCT 58.163 55.000 0.00 0.00 42.04 3.85
623 740 1.744522 GAGACCTCGTCAGTTAGGGTC 59.255 57.143 0.00 0.00 44.64 4.46
638 755 1.673920 TGTCAAAACCAAAGCGAGACC 59.326 47.619 0.00 0.00 0.00 3.85
641 758 3.108144 CAACTGTCAAAACCAAAGCGAG 58.892 45.455 0.00 0.00 0.00 5.03
671 788 2.126031 GCTTCGTCAGGACCCGTC 60.126 66.667 0.00 0.00 0.00 4.79
674 791 0.250513 ATTGAGCTTCGTCAGGACCC 59.749 55.000 0.00 0.00 0.00 4.46
684 801 0.097150 GCGACGGGAAATTGAGCTTC 59.903 55.000 0.00 0.00 0.00 3.86
685 802 1.305930 GGCGACGGGAAATTGAGCTT 61.306 55.000 0.00 0.00 0.00 3.74
686 803 1.745489 GGCGACGGGAAATTGAGCT 60.745 57.895 0.00 0.00 0.00 4.09
687 804 2.791927 GGCGACGGGAAATTGAGC 59.208 61.111 0.00 0.00 0.00 4.26
700 817 1.399744 ATACAGATGGAAGGCGGCGA 61.400 55.000 12.98 0.00 0.00 5.54
702 819 0.603975 GGATACAGATGGAAGGCGGC 60.604 60.000 0.00 0.00 0.00 6.53
705 822 0.603975 GGCGGATACAGATGGAAGGC 60.604 60.000 0.00 0.00 0.00 4.35
706 823 0.319900 CGGCGGATACAGATGGAAGG 60.320 60.000 0.00 0.00 0.00 3.46
707 824 0.389391 ACGGCGGATACAGATGGAAG 59.611 55.000 13.24 0.00 0.00 3.46
708 825 0.387929 GACGGCGGATACAGATGGAA 59.612 55.000 13.24 0.00 0.00 3.53
709 826 1.792118 CGACGGCGGATACAGATGGA 61.792 60.000 13.24 0.00 0.00 3.41
710 827 1.371758 CGACGGCGGATACAGATGG 60.372 63.158 13.24 0.00 0.00 3.51
711 828 2.016704 GCGACGGCGGATACAGATG 61.017 63.158 15.06 0.00 38.16 2.90
712 829 2.335369 GCGACGGCGGATACAGAT 59.665 61.111 15.06 0.00 38.16 2.90
713 830 3.896133 GGCGACGGCGGATACAGA 61.896 66.667 15.06 0.00 41.24 3.41
714 831 3.825833 GAGGCGACGGCGGATACAG 62.826 68.421 15.06 0.00 41.24 2.74
715 832 3.896133 GAGGCGACGGCGGATACA 61.896 66.667 15.06 0.00 41.24 2.29
716 833 3.420214 TTGAGGCGACGGCGGATAC 62.420 63.158 15.06 0.00 41.24 2.24
717 834 3.142162 TTGAGGCGACGGCGGATA 61.142 61.111 15.06 0.87 41.24 2.59
718 835 4.814294 GTTGAGGCGACGGCGGAT 62.814 66.667 15.06 0.00 41.24 4.18
723 840 4.796231 CGGGAGTTGAGGCGACGG 62.796 72.222 0.00 0.00 0.00 4.79
724 841 4.796231 CCGGGAGTTGAGGCGACG 62.796 72.222 0.00 0.00 0.00 5.12
743 860 3.827898 CTCTGACCTCGGACCGCC 61.828 72.222 9.66 0.00 0.00 6.13
744 861 2.065906 GATCTCTGACCTCGGACCGC 62.066 65.000 9.66 0.00 0.00 5.68
745 862 0.464735 AGATCTCTGACCTCGGACCG 60.465 60.000 7.84 7.84 0.00 4.79
746 863 1.407258 CAAGATCTCTGACCTCGGACC 59.593 57.143 0.00 0.00 0.00 4.46
747 864 2.096248 ACAAGATCTCTGACCTCGGAC 58.904 52.381 0.00 0.00 0.00 4.79
748 865 2.516227 ACAAGATCTCTGACCTCGGA 57.484 50.000 0.00 0.00 0.00 4.55
749 866 2.034053 GCTACAAGATCTCTGACCTCGG 59.966 54.545 0.00 0.00 0.00 4.63
750 867 2.948979 AGCTACAAGATCTCTGACCTCG 59.051 50.000 0.00 0.00 0.00 4.63
751 868 5.337578 AAAGCTACAAGATCTCTGACCTC 57.662 43.478 0.00 0.00 0.00 3.85
752 869 6.041523 GGATAAAGCTACAAGATCTCTGACCT 59.958 42.308 0.00 0.00 0.00 3.85
753 870 6.220201 GGATAAAGCTACAAGATCTCTGACC 58.780 44.000 0.00 0.00 0.00 4.02
754 871 5.918011 CGGATAAAGCTACAAGATCTCTGAC 59.082 44.000 0.00 0.00 0.00 3.51
755 872 5.828328 TCGGATAAAGCTACAAGATCTCTGA 59.172 40.000 0.00 0.00 0.00 3.27
756 873 5.918011 GTCGGATAAAGCTACAAGATCTCTG 59.082 44.000 0.00 0.00 0.00 3.35
757 874 5.010213 GGTCGGATAAAGCTACAAGATCTCT 59.990 44.000 0.00 0.00 0.00 3.10
758 875 5.224135 GGTCGGATAAAGCTACAAGATCTC 58.776 45.833 0.00 0.00 0.00 2.75
759 876 4.261656 CGGTCGGATAAAGCTACAAGATCT 60.262 45.833 0.00 0.00 0.00 2.75
760 877 3.982058 CGGTCGGATAAAGCTACAAGATC 59.018 47.826 0.00 0.00 0.00 2.75
761 878 3.383825 ACGGTCGGATAAAGCTACAAGAT 59.616 43.478 0.00 0.00 0.00 2.40
762 879 2.756760 ACGGTCGGATAAAGCTACAAGA 59.243 45.455 0.00 0.00 0.00 3.02
763 880 3.114065 GACGGTCGGATAAAGCTACAAG 58.886 50.000 0.00 0.00 0.00 3.16
764 881 2.756760 AGACGGTCGGATAAAGCTACAA 59.243 45.455 1.89 0.00 0.00 2.41
765 882 2.372264 AGACGGTCGGATAAAGCTACA 58.628 47.619 1.89 0.00 0.00 2.74
766 883 3.605692 CGTAGACGGTCGGATAAAGCTAC 60.606 52.174 1.89 0.00 35.37 3.58
767 884 2.545526 CGTAGACGGTCGGATAAAGCTA 59.454 50.000 1.89 0.00 35.37 3.32
768 885 1.332997 CGTAGACGGTCGGATAAAGCT 59.667 52.381 1.89 0.00 35.37 3.74
769 886 1.331756 TCGTAGACGGTCGGATAAAGC 59.668 52.381 1.89 0.00 40.29 3.51
789 906 2.657143 GTACCTCCTCAGAATCCGAGT 58.343 52.381 0.00 0.00 0.00 4.18
816 933 1.170442 GCGATCGGGAAAGGGAAAAA 58.830 50.000 18.30 0.00 0.00 1.94
833 950 1.787155 CTCGATCCTAAACCGATTGCG 59.213 52.381 0.00 0.00 37.24 4.85
856 973 6.092259 CAGGGGTTCTAACTAAGTTGAAATCG 59.908 42.308 0.00 0.00 0.00 3.34
870 987 1.850289 TGCCTGCCAGGGGTTCTAA 60.850 57.895 13.78 0.00 35.37 2.10
928 1045 4.590918 TCAGACTAGAGGACGAAGATTGT 58.409 43.478 0.00 0.00 0.00 2.71
934 1051 4.774660 AGGTATCAGACTAGAGGACGAA 57.225 45.455 0.00 0.00 0.00 3.85
963 1080 6.519382 TCTGTCTGTCATATAATCTGCCAAG 58.481 40.000 0.00 0.00 0.00 3.61
990 1107 1.772182 GGTTCATCATCCGCTCTACG 58.228 55.000 0.00 0.00 43.15 3.51
996 1113 0.179084 TTCTCCGGTTCATCATCCGC 60.179 55.000 0.00 0.00 44.63 5.54
1013 1130 1.002544 CCTCCTCCGGGCTATCAATTC 59.997 57.143 0.00 0.00 0.00 2.17
1025 1142 0.602562 GATCATCTGCTCCTCCTCCG 59.397 60.000 0.00 0.00 0.00 4.63
1128 1251 0.749049 TCCAGTCATCGATCAGCAGG 59.251 55.000 0.00 0.00 0.00 4.85
1135 1258 1.745141 GCCTTTGCTCCAGTCATCGAT 60.745 52.381 0.00 0.00 33.53 3.59
1137 1260 2.093216 GCCTTTGCTCCAGTCATCG 58.907 57.895 0.00 0.00 33.53 3.84
1162 1285 8.660373 GTTAGTGTCCTTGTCAATCTTATGAAG 58.340 37.037 0.00 0.00 0.00 3.02
1167 1290 8.418597 AGTAGTTAGTGTCCTTGTCAATCTTA 57.581 34.615 0.00 0.00 0.00 2.10
1180 1303 3.374678 CGGAGGTCAGAGTAGTTAGTGTC 59.625 52.174 0.00 0.00 0.00 3.67
1201 1324 4.821589 GAGAACGCCAGGCTCCCG 62.822 72.222 10.54 0.00 0.00 5.14
1212 1335 0.643820 GTGCGATTAACCGGAGAACG 59.356 55.000 9.46 8.45 43.80 3.95
1236 1359 2.740714 GGTCATGCAACGACGAGGC 61.741 63.158 0.00 5.12 34.04 4.70
1270 1393 2.440409 AGTGGTGATGAAGATGTTGCC 58.560 47.619 0.00 0.00 0.00 4.52
1282 1405 1.298667 GGCGTGGGTTAGTGGTGAT 59.701 57.895 0.00 0.00 0.00 3.06
1285 1408 3.236233 ACGGCGTGGGTTAGTGGT 61.236 61.111 13.76 0.00 0.00 4.16
1300 1423 2.262915 GCTGGAGGTCTGTCCACG 59.737 66.667 0.00 0.00 41.99 4.94
1308 1431 0.458025 CGTAAACGAGGCTGGAGGTC 60.458 60.000 2.65 0.00 43.02 3.85
1332 1455 8.033038 TGTTCTATTATATATTTTCGCGCCTCT 58.967 33.333 0.00 0.00 0.00 3.69
1333 1456 8.108782 GTGTTCTATTATATATTTTCGCGCCTC 58.891 37.037 0.00 0.00 0.00 4.70
1334 1457 7.064253 GGTGTTCTATTATATATTTTCGCGCCT 59.936 37.037 0.00 0.00 0.00 5.52
1335 1458 7.064253 AGGTGTTCTATTATATATTTTCGCGCC 59.936 37.037 0.00 0.00 0.00 6.53
1336 1459 7.898309 CAGGTGTTCTATTATATATTTTCGCGC 59.102 37.037 0.00 0.00 0.00 6.86
1337 1460 7.898309 GCAGGTGTTCTATTATATATTTTCGCG 59.102 37.037 0.00 0.00 0.00 5.87
1338 1461 8.717821 TGCAGGTGTTCTATTATATATTTTCGC 58.282 33.333 0.00 0.00 0.00 4.70
1341 1464 9.297037 GGGTGCAGGTGTTCTATTATATATTTT 57.703 33.333 0.00 0.00 0.00 1.82
1342 1465 8.444783 TGGGTGCAGGTGTTCTATTATATATTT 58.555 33.333 0.00 0.00 0.00 1.40
1343 1466 7.984475 TGGGTGCAGGTGTTCTATTATATATT 58.016 34.615 0.00 0.00 0.00 1.28
1344 1467 7.311297 CCTGGGTGCAGGTGTTCTATTATATAT 60.311 40.741 0.00 0.00 37.57 0.86
1345 1468 6.013725 CCTGGGTGCAGGTGTTCTATTATATA 60.014 42.308 0.00 0.00 37.57 0.86
1346 1469 5.221925 CCTGGGTGCAGGTGTTCTATTATAT 60.222 44.000 0.00 0.00 37.57 0.86
1347 1470 4.102524 CCTGGGTGCAGGTGTTCTATTATA 59.897 45.833 0.00 0.00 37.57 0.98
1348 1471 3.117888 CCTGGGTGCAGGTGTTCTATTAT 60.118 47.826 0.00 0.00 37.57 1.28
1349 1472 2.238646 CCTGGGTGCAGGTGTTCTATTA 59.761 50.000 0.00 0.00 37.57 0.98
1350 1473 1.004745 CCTGGGTGCAGGTGTTCTATT 59.995 52.381 0.00 0.00 37.57 1.73
1351 1474 0.620556 CCTGGGTGCAGGTGTTCTAT 59.379 55.000 0.00 0.00 37.57 1.98
1352 1475 2.066340 CCTGGGTGCAGGTGTTCTA 58.934 57.895 0.00 0.00 37.57 2.10
1353 1476 2.839098 CCTGGGTGCAGGTGTTCT 59.161 61.111 0.00 0.00 37.57 3.01
1354 1477 2.985847 GCCTGGGTGCAGGTGTTC 60.986 66.667 0.00 0.00 44.07 3.18
1355 1478 4.603535 GGCCTGGGTGCAGGTGTT 62.604 66.667 0.00 0.00 44.07 3.32
1359 1482 4.748144 GAAGGGCCTGGGTGCAGG 62.748 72.222 6.92 0.00 44.98 4.85
1360 1483 4.748144 GGAAGGGCCTGGGTGCAG 62.748 72.222 6.92 0.00 0.00 4.41
1369 1492 1.557371 GATGGCTAGATAGGAAGGGCC 59.443 57.143 0.00 0.00 39.93 5.80
1370 1493 1.557371 GGATGGCTAGATAGGAAGGGC 59.443 57.143 0.00 0.00 0.00 5.19
1371 1494 2.907892 TGGATGGCTAGATAGGAAGGG 58.092 52.381 0.00 0.00 0.00 3.95
1372 1495 4.782156 AGAATGGATGGCTAGATAGGAAGG 59.218 45.833 0.00 0.00 0.00 3.46
1373 1496 5.732633 CAGAATGGATGGCTAGATAGGAAG 58.267 45.833 0.00 0.00 0.00 3.46
1374 1497 4.019860 GCAGAATGGATGGCTAGATAGGAA 60.020 45.833 0.00 0.00 35.86 3.36
1375 1498 3.517100 GCAGAATGGATGGCTAGATAGGA 59.483 47.826 0.00 0.00 35.86 2.94
1376 1499 3.678252 CGCAGAATGGATGGCTAGATAGG 60.678 52.174 0.00 0.00 35.86 2.57
1377 1500 3.519579 CGCAGAATGGATGGCTAGATAG 58.480 50.000 0.00 0.00 35.86 2.08
1378 1501 2.354103 GCGCAGAATGGATGGCTAGATA 60.354 50.000 0.30 0.00 35.86 1.98
1379 1502 1.610102 GCGCAGAATGGATGGCTAGAT 60.610 52.381 0.30 0.00 35.86 1.98
1380 1503 0.250038 GCGCAGAATGGATGGCTAGA 60.250 55.000 0.30 0.00 35.86 2.43
1381 1504 0.250209 AGCGCAGAATGGATGGCTAG 60.250 55.000 11.47 0.00 35.86 3.42
1382 1505 0.181114 AAGCGCAGAATGGATGGCTA 59.819 50.000 11.47 0.00 35.86 3.93
1383 1506 1.077212 AAGCGCAGAATGGATGGCT 60.077 52.632 11.47 0.00 35.86 4.75
1384 1507 1.358046 GAAGCGCAGAATGGATGGC 59.642 57.895 11.47 0.00 35.86 4.40
1385 1508 1.091771 ACGAAGCGCAGAATGGATGG 61.092 55.000 11.47 0.00 35.86 3.51
1386 1509 0.027194 CACGAAGCGCAGAATGGATG 59.973 55.000 11.47 0.00 35.86 3.51
1387 1510 0.108186 TCACGAAGCGCAGAATGGAT 60.108 50.000 11.47 0.00 35.86 3.41
1388 1511 0.108186 ATCACGAAGCGCAGAATGGA 60.108 50.000 11.47 0.00 35.86 3.41
1389 1512 0.729116 AATCACGAAGCGCAGAATGG 59.271 50.000 11.47 0.00 35.86 3.16
1390 1513 1.590679 CGAATCACGAAGCGCAGAATG 60.591 52.381 11.47 2.34 45.77 2.67
1391 1514 0.647410 CGAATCACGAAGCGCAGAAT 59.353 50.000 11.47 0.00 45.77 2.40
1392 1515 0.666274 ACGAATCACGAAGCGCAGAA 60.666 50.000 11.47 0.00 45.77 3.02
1393 1516 1.080772 ACGAATCACGAAGCGCAGA 60.081 52.632 11.47 0.00 45.77 4.26
1394 1517 1.057822 CACGAATCACGAAGCGCAG 59.942 57.895 11.47 2.53 45.77 5.18
1395 1518 3.010585 GCACGAATCACGAAGCGCA 62.011 57.895 11.47 0.00 45.77 6.09
1396 1519 2.276058 GCACGAATCACGAAGCGC 60.276 61.111 0.00 0.00 45.77 5.92
1397 1520 0.110867 TTTGCACGAATCACGAAGCG 60.111 50.000 0.00 0.00 45.77 4.68
1398 1521 1.318251 GTTTGCACGAATCACGAAGC 58.682 50.000 0.00 0.00 45.77 3.86
1399 1522 2.298300 GTGTTTGCACGAATCACGAAG 58.702 47.619 0.00 0.00 45.77 3.79
1400 1523 2.376915 GTGTTTGCACGAATCACGAA 57.623 45.000 0.00 0.00 45.77 3.85
1428 1551 7.704472 ACATGTTTTATGCGAGAGAAACAAAAA 59.296 29.630 0.00 0.00 42.93 1.94
1429 1552 7.199766 ACATGTTTTATGCGAGAGAAACAAAA 58.800 30.769 0.00 0.00 42.93 2.44
1430 1553 6.734137 ACATGTTTTATGCGAGAGAAACAAA 58.266 32.000 0.00 0.00 42.93 2.83
1431 1554 6.312399 ACATGTTTTATGCGAGAGAAACAA 57.688 33.333 0.00 0.00 42.93 2.83
1432 1555 5.940192 ACATGTTTTATGCGAGAGAAACA 57.060 34.783 0.00 9.07 43.56 2.83
1433 1556 7.378461 TCAAAACATGTTTTATGCGAGAGAAAC 59.622 33.333 30.65 0.00 40.45 2.78
1434 1557 7.421599 TCAAAACATGTTTTATGCGAGAGAAA 58.578 30.769 30.65 4.84 40.45 2.52
1435 1558 6.964908 TCAAAACATGTTTTATGCGAGAGAA 58.035 32.000 30.65 5.47 40.45 2.87
1436 1559 6.552859 TCAAAACATGTTTTATGCGAGAGA 57.447 33.333 30.65 19.90 40.45 3.10
1437 1560 7.621832 TTTCAAAACATGTTTTATGCGAGAG 57.378 32.000 30.65 18.23 40.45 3.20
1438 1561 8.586570 AATTTCAAAACATGTTTTATGCGAGA 57.413 26.923 30.65 21.10 40.45 4.04
1439 1562 8.486383 TGAATTTCAAAACATGTTTTATGCGAG 58.514 29.630 30.65 19.45 40.45 5.03
1440 1563 8.357796 TGAATTTCAAAACATGTTTTATGCGA 57.642 26.923 30.65 22.02 40.45 5.10
1441 1564 8.984482 TTGAATTTCAAAACATGTTTTATGCG 57.016 26.923 30.65 20.37 40.45 4.73
1454 1577 5.447010 CGCTGCAAAGGTTTGAATTTCAAAA 60.447 36.000 22.57 7.77 46.53 2.44
1455 1578 4.033817 CGCTGCAAAGGTTTGAATTTCAAA 59.966 37.500 18.29 18.29 43.37 2.69
1456 1579 3.555139 CGCTGCAAAGGTTTGAATTTCAA 59.445 39.130 7.74 7.74 40.55 2.69
1457 1580 3.122297 CGCTGCAAAGGTTTGAATTTCA 58.878 40.909 6.63 0.00 40.55 2.69
1458 1581 3.060339 CACGCTGCAAAGGTTTGAATTTC 60.060 43.478 6.63 0.00 40.55 2.17
1459 1582 2.865551 CACGCTGCAAAGGTTTGAATTT 59.134 40.909 6.63 0.00 40.55 1.82
1460 1583 2.472816 CACGCTGCAAAGGTTTGAATT 58.527 42.857 6.63 0.00 40.55 2.17
1461 1584 1.269726 CCACGCTGCAAAGGTTTGAAT 60.270 47.619 6.63 0.00 40.55 2.57
1462 1585 0.102120 CCACGCTGCAAAGGTTTGAA 59.898 50.000 6.63 0.00 40.55 2.69
1463 1586 1.732917 CCACGCTGCAAAGGTTTGA 59.267 52.632 6.63 0.00 40.55 2.69
1464 1587 1.950630 GCCACGCTGCAAAGGTTTG 60.951 57.895 0.00 0.00 41.03 2.93
1465 1588 2.417097 GCCACGCTGCAAAGGTTT 59.583 55.556 0.00 0.00 0.00 3.27
1466 1589 2.832661 TGCCACGCTGCAAAGGTT 60.833 55.556 0.00 0.00 38.56 3.50
1472 1595 2.682256 GAAAGCTTTGCCACGCTGCA 62.682 55.000 18.30 0.00 40.07 4.41
1473 1596 2.018324 GAAAGCTTTGCCACGCTGC 61.018 57.895 18.30 0.00 36.45 5.25
1474 1597 0.874390 TAGAAAGCTTTGCCACGCTG 59.126 50.000 18.30 0.00 36.45 5.18
1475 1598 1.740025 GATAGAAAGCTTTGCCACGCT 59.260 47.619 18.30 8.71 38.30 5.07
1476 1599 1.740025 AGATAGAAAGCTTTGCCACGC 59.260 47.619 18.30 0.25 0.00 5.34
1477 1600 5.545658 TTTAGATAGAAAGCTTTGCCACG 57.454 39.130 18.30 0.00 0.00 4.94
1478 1601 7.766283 AGATTTTAGATAGAAAGCTTTGCCAC 58.234 34.615 18.30 1.49 29.17 5.01
1479 1602 7.944729 AGATTTTAGATAGAAAGCTTTGCCA 57.055 32.000 18.30 1.15 29.17 4.92
1480 1603 8.563732 CCTAGATTTTAGATAGAAAGCTTTGCC 58.436 37.037 18.30 2.73 34.82 4.52
1481 1604 9.331282 TCCTAGATTTTAGATAGAAAGCTTTGC 57.669 33.333 18.30 8.41 34.82 3.68
1531 1654 8.660373 CGTGACAAAGCTTTCTATCTAGAATTT 58.340 33.333 9.23 0.00 41.52 1.82
1532 1655 7.201565 GCGTGACAAAGCTTTCTATCTAGAATT 60.202 37.037 9.23 0.00 41.52 2.17
1533 1656 6.256757 GCGTGACAAAGCTTTCTATCTAGAAT 59.743 38.462 9.23 0.00 41.52 2.40
1534 1657 5.577164 GCGTGACAAAGCTTTCTATCTAGAA 59.423 40.000 9.23 0.00 40.33 2.10
1535 1658 5.103000 GCGTGACAAAGCTTTCTATCTAGA 58.897 41.667 9.23 0.00 0.00 2.43
1536 1659 5.005203 CAGCGTGACAAAGCTTTCTATCTAG 59.995 44.000 9.23 7.03 39.27 2.43
1537 1660 4.864806 CAGCGTGACAAAGCTTTCTATCTA 59.135 41.667 9.23 0.00 39.27 1.98
1538 1661 3.681897 CAGCGTGACAAAGCTTTCTATCT 59.318 43.478 9.23 0.00 39.27 1.98
1539 1662 3.726190 GCAGCGTGACAAAGCTTTCTATC 60.726 47.826 9.23 8.10 39.27 2.08
1540 1663 2.160417 GCAGCGTGACAAAGCTTTCTAT 59.840 45.455 9.23 0.00 39.27 1.98
1541 1664 1.531149 GCAGCGTGACAAAGCTTTCTA 59.469 47.619 9.23 0.00 39.27 2.10
1542 1665 0.308993 GCAGCGTGACAAAGCTTTCT 59.691 50.000 9.23 0.00 39.27 2.52
1543 1666 0.029300 TGCAGCGTGACAAAGCTTTC 59.971 50.000 9.23 0.00 39.27 2.62
1544 1667 0.455410 TTGCAGCGTGACAAAGCTTT 59.545 45.000 5.69 5.69 39.27 3.51
1545 1668 0.455410 TTTGCAGCGTGACAAAGCTT 59.545 45.000 0.00 0.00 39.27 3.74
1546 1669 0.029834 CTTTGCAGCGTGACAAAGCT 59.970 50.000 11.39 1.23 44.32 3.74
1547 1670 2.498892 CTTTGCAGCGTGACAAAGC 58.501 52.632 11.39 0.00 44.32 3.51
1549 1672 0.814457 AACCTTTGCAGCGTGACAAA 59.186 45.000 0.00 0.00 34.73 2.83
1550 1673 0.814457 AAACCTTTGCAGCGTGACAA 59.186 45.000 0.00 0.00 0.00 3.18
1551 1674 0.100325 CAAACCTTTGCAGCGTGACA 59.900 50.000 0.00 0.00 0.00 3.58
1552 1675 0.380378 TCAAACCTTTGCAGCGTGAC 59.620 50.000 0.00 0.00 38.05 3.67
1553 1676 1.098869 TTCAAACCTTTGCAGCGTGA 58.901 45.000 0.00 0.00 38.05 4.35
1554 1677 2.138596 ATTCAAACCTTTGCAGCGTG 57.861 45.000 0.00 0.00 38.05 5.34
1555 1678 2.472816 CAATTCAAACCTTTGCAGCGT 58.527 42.857 0.00 0.00 38.05 5.07
1556 1679 1.192980 GCAATTCAAACCTTTGCAGCG 59.807 47.619 2.25 0.00 43.95 5.18
1557 1680 2.955607 GCAATTCAAACCTTTGCAGC 57.044 45.000 2.25 0.00 43.95 5.25
1560 1683 4.979388 TGTTTTGCAATTCAAACCTTTGC 58.021 34.783 0.00 0.00 43.76 3.68
1561 1684 6.553524 ACATGTTTTGCAATTCAAACCTTTG 58.446 32.000 0.00 2.97 43.76 2.77
1562 1685 6.756299 ACATGTTTTGCAATTCAAACCTTT 57.244 29.167 0.00 0.00 43.76 3.11
1563 1686 6.756299 AACATGTTTTGCAATTCAAACCTT 57.244 29.167 4.92 0.00 43.76 3.50
1564 1687 6.756299 AAACATGTTTTGCAATTCAAACCT 57.244 29.167 18.13 0.00 43.76 3.50
1565 1688 8.956014 CATAAAACATGTTTTGCAATTCAAACC 58.044 29.630 35.69 0.00 43.76 3.27
1566 1689 8.470679 GCATAAAACATGTTTTGCAATTCAAAC 58.529 29.630 35.69 14.07 43.76 2.93
1567 1690 7.375280 CGCATAAAACATGTTTTGCAATTCAAA 59.625 29.630 35.69 19.32 42.18 2.69
1568 1691 6.849811 CGCATAAAACATGTTTTGCAATTCAA 59.150 30.769 35.69 19.92 42.18 2.69
1569 1692 6.201615 TCGCATAAAACATGTTTTGCAATTCA 59.798 30.769 35.69 20.54 42.18 2.57
1570 1693 6.588552 TCGCATAAAACATGTTTTGCAATTC 58.411 32.000 35.69 20.20 42.18 2.17
1571 1694 6.423302 TCTCGCATAAAACATGTTTTGCAATT 59.577 30.769 35.69 18.40 42.18 2.32
1572 1695 5.925397 TCTCGCATAAAACATGTTTTGCAAT 59.075 32.000 35.69 23.38 42.18 3.56
1573 1696 5.284864 TCTCGCATAAAACATGTTTTGCAA 58.715 33.333 35.69 22.40 42.18 4.08
1574 1697 4.864633 TCTCGCATAAAACATGTTTTGCA 58.135 34.783 35.69 23.00 42.18 4.08
1575 1698 5.153513 TCTCTCGCATAAAACATGTTTTGC 58.846 37.500 35.69 31.19 42.18 3.68
1576 1699 7.167302 TGTTTCTCTCGCATAAAACATGTTTTG 59.833 33.333 35.69 25.85 42.18 2.44
1577 1700 7.199766 TGTTTCTCTCGCATAAAACATGTTTT 58.800 30.769 32.63 32.63 44.16 2.43
1578 1701 6.734137 TGTTTCTCTCGCATAAAACATGTTT 58.266 32.000 18.13 18.13 36.86 2.83
1579 1702 6.312399 TGTTTCTCTCGCATAAAACATGTT 57.688 33.333 4.92 4.92 36.86 2.71
1580 1703 5.940192 TGTTTCTCTCGCATAAAACATGT 57.060 34.783 0.00 0.00 36.86 3.21
1581 1704 7.621832 TTTTGTTTCTCTCGCATAAAACATG 57.378 32.000 0.00 0.00 40.25 3.21
1611 1734 9.296400 GCAACACAACTAACTTTTTATCTGAAA 57.704 29.630 0.00 0.00 0.00 2.69
1612 1735 8.462811 TGCAACACAACTAACTTTTTATCTGAA 58.537 29.630 0.00 0.00 0.00 3.02
1613 1736 7.913297 GTGCAACACAACTAACTTTTTATCTGA 59.087 33.333 0.00 0.00 36.32 3.27
1614 1737 7.700234 TGTGCAACACAACTAACTTTTTATCTG 59.300 33.333 0.00 0.00 45.67 2.90
1615 1738 7.767261 TGTGCAACACAACTAACTTTTTATCT 58.233 30.769 0.00 0.00 45.67 1.98
1616 1739 7.913297 TCTGTGCAACACAACTAACTTTTTATC 59.087 33.333 1.64 0.00 45.67 1.75
1617 1740 7.767261 TCTGTGCAACACAACTAACTTTTTAT 58.233 30.769 1.64 0.00 45.67 1.40
1618 1741 7.147143 TCTGTGCAACACAACTAACTTTTTA 57.853 32.000 1.64 0.00 45.67 1.52
1619 1742 6.019779 TCTGTGCAACACAACTAACTTTTT 57.980 33.333 1.64 0.00 45.67 1.94
1620 1743 5.637006 TCTGTGCAACACAACTAACTTTT 57.363 34.783 1.64 0.00 45.67 2.27
1621 1744 5.590259 AGATCTGTGCAACACAACTAACTTT 59.410 36.000 0.00 0.00 45.67 2.66
1622 1745 5.126067 AGATCTGTGCAACACAACTAACTT 58.874 37.500 0.00 0.00 45.67 2.66
1623 1746 4.708177 AGATCTGTGCAACACAACTAACT 58.292 39.130 0.00 0.00 45.67 2.24
1624 1747 5.424121 AAGATCTGTGCAACACAACTAAC 57.576 39.130 0.00 0.00 45.67 2.34
1625 1748 7.561021 TTTAAGATCTGTGCAACACAACTAA 57.439 32.000 0.00 0.00 45.67 2.24
1626 1749 7.066404 TGTTTTAAGATCTGTGCAACACAACTA 59.934 33.333 0.00 0.00 45.67 2.24
1627 1750 6.127758 TGTTTTAAGATCTGTGCAACACAACT 60.128 34.615 0.00 0.00 45.67 3.16
1628 1751 6.033341 TGTTTTAAGATCTGTGCAACACAAC 58.967 36.000 0.00 0.00 45.67 3.32
1629 1752 6.201226 TGTTTTAAGATCTGTGCAACACAA 57.799 33.333 0.00 0.00 45.67 3.33
1630 1753 5.826601 TGTTTTAAGATCTGTGCAACACA 57.173 34.783 0.00 0.00 45.67 3.72
1631 1754 8.970691 ATATTGTTTTAAGATCTGTGCAACAC 57.029 30.769 0.00 0.00 45.67 3.32
1633 1756 8.863049 CCAATATTGTTTTAAGATCTGTGCAAC 58.137 33.333 14.25 0.00 37.35 4.17
1634 1757 8.801299 TCCAATATTGTTTTAAGATCTGTGCAA 58.199 29.630 14.25 0.00 0.00 4.08
1635 1758 8.243426 GTCCAATATTGTTTTAAGATCTGTGCA 58.757 33.333 14.25 0.00 0.00 4.57
1636 1759 8.243426 TGTCCAATATTGTTTTAAGATCTGTGC 58.757 33.333 14.25 0.00 0.00 4.57
1637 1760 9.778993 CTGTCCAATATTGTTTTAAGATCTGTG 57.221 33.333 14.25 0.00 0.00 3.66
1638 1761 9.520515 ACTGTCCAATATTGTTTTAAGATCTGT 57.479 29.630 14.25 5.89 0.00 3.41
1647 1770 8.903820 GCTATCCTAACTGTCCAATATTGTTTT 58.096 33.333 14.25 2.91 0.00 2.43
1648 1771 8.052748 TGCTATCCTAACTGTCCAATATTGTTT 58.947 33.333 14.25 2.60 0.00 2.83
1649 1772 7.573710 TGCTATCCTAACTGTCCAATATTGTT 58.426 34.615 14.25 4.36 0.00 2.83
1650 1773 7.136822 TGCTATCCTAACTGTCCAATATTGT 57.863 36.000 14.25 0.00 0.00 2.71
1651 1774 6.652481 CCTGCTATCCTAACTGTCCAATATTG 59.348 42.308 8.58 8.58 0.00 1.90
1652 1775 6.240002 CCCTGCTATCCTAACTGTCCAATATT 60.240 42.308 0.00 0.00 0.00 1.28
1653 1776 5.249393 CCCTGCTATCCTAACTGTCCAATAT 59.751 44.000 0.00 0.00 0.00 1.28
1654 1777 4.593206 CCCTGCTATCCTAACTGTCCAATA 59.407 45.833 0.00 0.00 0.00 1.90
1655 1778 3.392616 CCCTGCTATCCTAACTGTCCAAT 59.607 47.826 0.00 0.00 0.00 3.16
1656 1779 2.771943 CCCTGCTATCCTAACTGTCCAA 59.228 50.000 0.00 0.00 0.00 3.53
1657 1780 2.398588 CCCTGCTATCCTAACTGTCCA 58.601 52.381 0.00 0.00 0.00 4.02
1658 1781 1.070914 GCCCTGCTATCCTAACTGTCC 59.929 57.143 0.00 0.00 0.00 4.02
1659 1782 1.070914 GGCCCTGCTATCCTAACTGTC 59.929 57.143 0.00 0.00 0.00 3.51
1660 1783 1.132500 GGCCCTGCTATCCTAACTGT 58.868 55.000 0.00 0.00 0.00 3.55
1661 1784 0.398318 GGGCCCTGCTATCCTAACTG 59.602 60.000 17.04 0.00 0.00 3.16
1662 1785 1.122019 CGGGCCCTGCTATCCTAACT 61.122 60.000 22.43 0.00 0.00 2.24
1663 1786 1.371558 CGGGCCCTGCTATCCTAAC 59.628 63.158 22.43 0.00 0.00 2.34
1664 1787 1.841556 CCGGGCCCTGCTATCCTAA 60.842 63.158 22.43 0.00 0.00 2.69
1665 1788 2.203788 CCGGGCCCTGCTATCCTA 60.204 66.667 22.43 0.00 0.00 2.94
1668 1791 4.256180 CACCCGGGCCCTGCTATC 62.256 72.222 24.08 0.00 0.00 2.08
1676 1799 4.740822 AACATCTGCACCCGGGCC 62.741 66.667 24.08 13.26 0.00 5.80
1677 1800 0.963355 TAAAACATCTGCACCCGGGC 60.963 55.000 24.08 8.36 0.00 6.13
1678 1801 1.540267 TTAAAACATCTGCACCCGGG 58.460 50.000 22.25 22.25 0.00 5.73
1679 1802 3.651803 TTTTAAAACATCTGCACCCGG 57.348 42.857 0.00 0.00 0.00 5.73
1680 1803 5.694006 TGAATTTTTAAAACATCTGCACCCG 59.306 36.000 0.00 0.00 0.00 5.28
1681 1804 6.346518 CGTGAATTTTTAAAACATCTGCACCC 60.347 38.462 0.00 0.00 0.00 4.61
1682 1805 6.200097 ACGTGAATTTTTAAAACATCTGCACC 59.800 34.615 0.00 0.00 0.00 5.01
1683 1806 7.160633 ACGTGAATTTTTAAAACATCTGCAC 57.839 32.000 0.00 3.47 0.00 4.57
1684 1807 7.199766 AGACGTGAATTTTTAAAACATCTGCA 58.800 30.769 0.00 0.00 0.00 4.41
1685 1808 7.623268 AGACGTGAATTTTTAAAACATCTGC 57.377 32.000 0.00 0.31 0.00 4.26
1687 1810 9.377383 CGTAAGACGTGAATTTTTAAAACATCT 57.623 29.630 0.00 0.00 43.02 2.90
1688 1811 8.624028 CCGTAAGACGTGAATTTTTAAAACATC 58.376 33.333 0.00 2.95 40.58 3.06
1689 1812 8.344098 TCCGTAAGACGTGAATTTTTAAAACAT 58.656 29.630 0.00 0.00 40.58 2.71
1690 1813 7.692088 TCCGTAAGACGTGAATTTTTAAAACA 58.308 30.769 0.00 0.00 40.58 2.83
1691 1814 8.063630 TCTCCGTAAGACGTGAATTTTTAAAAC 58.936 33.333 0.00 0.00 40.58 2.43
1692 1815 8.063630 GTCTCCGTAAGACGTGAATTTTTAAAA 58.936 33.333 0.00 0.00 44.79 1.52
1693 1816 7.566709 GTCTCCGTAAGACGTGAATTTTTAAA 58.433 34.615 0.00 0.00 44.79 1.52
1694 1817 7.109006 GTCTCCGTAAGACGTGAATTTTTAA 57.891 36.000 0.00 0.00 44.79 1.52
1695 1818 6.695292 GTCTCCGTAAGACGTGAATTTTTA 57.305 37.500 0.00 0.00 44.79 1.52
1696 1819 5.587033 GTCTCCGTAAGACGTGAATTTTT 57.413 39.130 0.00 0.00 44.79 1.94
1800 1923 1.173043 GGACGAAACATGGGAATGCA 58.827 50.000 0.00 0.00 0.00 3.96
1821 1944 0.179045 AGAAGTCCTGCTGCGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
1856 1979 2.280524 CGTTCTCCGTTGGTGCCA 60.281 61.111 0.00 0.00 0.00 4.92
1869 1992 2.884207 GCCCACGGATCGTCGTTC 60.884 66.667 0.00 0.00 41.86 3.95
1962 2088 1.078426 ATCTGGGTGCAAGGCGTAC 60.078 57.895 0.00 0.00 0.00 3.67
1996 2122 1.011968 TACTTGCTGTGCGCCGTTAG 61.012 55.000 4.18 0.00 38.05 2.34
2000 2126 4.134187 CGTACTTGCTGTGCGCCG 62.134 66.667 4.18 0.00 46.47 6.46
2048 2174 0.037232 GGTGTCGAAGGAGAAGGTGG 60.037 60.000 0.00 0.00 0.00 4.61
2178 2304 2.633509 GGCAACTTGGCAGGAGCAG 61.634 63.158 16.95 1.89 43.14 4.24
2293 2419 1.021390 GTGAGAGTGGCGTCCATTGG 61.021 60.000 0.00 0.00 35.28 3.16
2311 2437 2.733945 GGCGTTGCCCAAATGTGT 59.266 55.556 0.00 0.00 44.06 3.72
2359 2487 1.202428 GCATCCTTGTACTCGACTCCC 60.202 57.143 0.00 0.00 0.00 4.30
2365 2493 2.159517 GCCAAAAGCATCCTTGTACTCG 60.160 50.000 0.00 0.00 42.97 4.18
2441 2569 0.251354 TTCATGGTCTGCAGCTCCTC 59.749 55.000 21.97 6.89 0.00 3.71
2479 2610 2.422803 GGGGGCATGCTTTGACACTATA 60.423 50.000 18.92 0.00 36.75 1.31
2488 2619 1.072173 GAAAACAAGGGGGCATGCTTT 59.928 47.619 18.92 7.33 0.00 3.51
2496 2627 0.694196 TACGGGAGAAAACAAGGGGG 59.306 55.000 0.00 0.00 0.00 5.40
2500 2631 2.474410 AGGCTACGGGAGAAAACAAG 57.526 50.000 0.00 0.00 0.00 3.16
2543 2674 1.337387 GGACGGGACAGAGTATGCTAC 59.663 57.143 0.00 0.00 0.00 3.58
2544 2675 1.688772 GGACGGGACAGAGTATGCTA 58.311 55.000 0.00 0.00 0.00 3.49
2545 2676 1.384989 CGGACGGGACAGAGTATGCT 61.385 60.000 0.00 0.00 0.00 3.79
2546 2677 1.065928 CGGACGGGACAGAGTATGC 59.934 63.158 0.00 0.00 0.00 3.14
2557 2688 1.378250 AGAGTAGTGGACGGACGGG 60.378 63.158 0.00 0.00 0.00 5.28
2561 2692 3.928005 AGATACAGAGTAGTGGACGGA 57.072 47.619 0.00 0.00 0.00 4.69
2703 2843 9.405587 GAACCACATGAAAATCTTAATTCGAAA 57.594 29.630 0.00 0.00 0.00 3.46
2791 2932 3.058293 GTGATCACAAAAACAGCATCCGA 60.058 43.478 21.07 0.00 0.00 4.55
2793 2934 4.241590 TGTGATCACAAAAACAGCATCC 57.758 40.909 26.02 0.00 38.56 3.51
2866 3008 7.352739 GTTAAAAGCTATATGTATTGTGCGCT 58.647 34.615 9.73 0.00 0.00 5.92
2926 3068 1.852309 TCACTCCATTGGGCCATGTAT 59.148 47.619 7.26 0.00 0.00 2.29
2935 3077 7.655732 TCGTTATATGTATGTTCACTCCATTGG 59.344 37.037 0.00 0.00 0.00 3.16
2972 3114 7.675062 CCCAAAGTAGTGCTCATATCTCTATT 58.325 38.462 0.00 0.00 0.00 1.73
2977 3119 3.455910 TGCCCAAAGTAGTGCTCATATCT 59.544 43.478 0.00 0.00 0.00 1.98
3060 3202 7.997773 TCCACGTTGTAGCTCTATAGATAAT 57.002 36.000 2.11 0.00 0.00 1.28
3109 3251 2.034221 GCCCCCTGGAGTTCACAC 59.966 66.667 0.00 0.00 0.00 3.82
3114 3256 1.149133 ATCAAAGGCCCCCTGGAGTT 61.149 55.000 0.00 0.00 32.13 3.01
3124 3266 1.830477 TGCACCCAATAATCAAAGGCC 59.170 47.619 0.00 0.00 0.00 5.19
3127 3269 3.056891 ACGGTTGCACCCAATAATCAAAG 60.057 43.478 0.00 0.00 33.75 2.77
3189 3331 2.999507 AGCCTATTATCAGCTCGTCG 57.000 50.000 0.00 0.00 28.40 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.