Multiple sequence alignment - TraesCS1A01G117600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G117600 chr1A 100.000 3647 0 0 1 3647 124898742 124895096 0.000000e+00 6735.0
1 TraesCS1A01G117600 chr1A 82.558 2299 323 52 829 3103 482248456 482250700 0.000000e+00 1953.0
2 TraesCS1A01G117600 chr1A 90.000 70 5 2 3244 3312 402800533 402800601 5.020000e-14 89.8
3 TraesCS1A01G117600 chr1D 96.262 2996 94 12 669 3647 114366231 114363237 0.000000e+00 4896.0
4 TraesCS1A01G117600 chr1D 82.478 2300 312 52 829 3098 381973779 381976017 0.000000e+00 1930.0
5 TraesCS1A01G117600 chr1D 86.957 69 5 2 3244 3312 320402797 320402733 1.400000e-09 75.0
6 TraesCS1A01G117600 chr1B 97.281 2427 66 0 857 3283 175429799 175427373 0.000000e+00 4117.0
7 TraesCS1A01G117600 chr1B 82.777 2276 315 40 829 3074 511973110 511975338 0.000000e+00 1960.0
8 TraesCS1A01G117600 chr1B 82.893 719 76 23 1 695 175430935 175430240 1.450000e-168 603.0
9 TraesCS1A01G117600 chr1B 89.737 380 13 5 3279 3647 175425177 175424813 2.570000e-126 462.0
10 TraesCS1A01G117600 chr1B 92.188 64 4 1 3250 3312 433438974 433438911 5.020000e-14 89.8
11 TraesCS1A01G117600 chr5D 82.165 1626 256 21 885 2484 40929133 40927516 0.000000e+00 1365.0
12 TraesCS1A01G117600 chr7D 82.308 130 17 5 3151 3276 446214193 446214066 1.380000e-19 108.0
13 TraesCS1A01G117600 chr7A 79.856 139 23 5 3155 3289 701493631 701493494 3.000000e-16 97.1
14 TraesCS1A01G117600 chr2D 72.488 418 74 37 271 668 80667080 80666684 3.000000e-16 97.1
15 TraesCS1A01G117600 chr2B 72.222 414 77 34 272 668 132294272 132293880 3.880000e-15 93.5
16 TraesCS1A01G117600 chr6D 81.720 93 11 5 414 504 367774379 367774291 5.050000e-09 73.1
17 TraesCS1A01G117600 chr6A 80.612 98 9 9 414 503 508279938 508279843 2.350000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G117600 chr1A 124895096 124898742 3646 True 6735.000000 6735 100.000000 1 3647 1 chr1A.!!$R1 3646
1 TraesCS1A01G117600 chr1A 482248456 482250700 2244 False 1953.000000 1953 82.558000 829 3103 1 chr1A.!!$F2 2274
2 TraesCS1A01G117600 chr1D 114363237 114366231 2994 True 4896.000000 4896 96.262000 669 3647 1 chr1D.!!$R1 2978
3 TraesCS1A01G117600 chr1D 381973779 381976017 2238 False 1930.000000 1930 82.478000 829 3098 1 chr1D.!!$F1 2269
4 TraesCS1A01G117600 chr1B 511973110 511975338 2228 False 1960.000000 1960 82.777000 829 3074 1 chr1B.!!$F1 2245
5 TraesCS1A01G117600 chr1B 175424813 175430935 6122 True 1727.333333 4117 89.970333 1 3647 3 chr1B.!!$R2 3646
6 TraesCS1A01G117600 chr5D 40927516 40929133 1617 True 1365.000000 1365 82.165000 885 2484 1 chr5D.!!$R1 1599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
43 44 0.108186 TCGGTGCTGAGCTAACATGG 60.108 55.000 5.83 0.0 0.00 3.66 F
51 52 0.817654 GAGCTAACATGGGTTTGGCC 59.182 55.000 0.00 0.0 38.45 5.36 F
709 733 0.960364 TCCCATTTGCGCTGGACTTC 60.960 55.000 15.29 0.0 35.70 3.01 F
740 774 1.422531 CTCCTATCTGGGCTGAAGCT 58.577 55.000 1.74 0.0 41.70 3.74 F
1469 1836 1.470805 CGCGTACAAGGTGATCATCCA 60.471 52.381 1.24 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1469 1836 2.348998 CCCCGAGCTCTTGCAACT 59.651 61.111 12.85 0.00 42.74 3.16 R
1723 2093 3.087031 CACACAAAGCCCTGATCAGAAT 58.913 45.455 24.62 6.39 0.00 2.40 R
2050 2423 3.737559 ATGTCCCATTTCACCTAAGCA 57.262 42.857 0.00 0.00 0.00 3.91 R
2052 2425 4.599041 TCCAATGTCCCATTTCACCTAAG 58.401 43.478 0.00 0.00 0.00 2.18 R
3136 3518 0.606604 TACTTGAGAACCGGGCAGAC 59.393 55.000 6.32 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.930826 ACCCTCAACACGAATGAGTT 57.069 45.000 13.09 0.00 42.19 3.01
20 21 2.767505 ACCCTCAACACGAATGAGTTC 58.232 47.619 13.09 0.00 42.19 3.01
30 31 2.159627 ACGAATGAGTTCATTTCGGTGC 59.840 45.455 20.17 5.74 45.72 5.01
35 36 1.129437 GAGTTCATTTCGGTGCTGAGC 59.871 52.381 0.00 0.00 0.00 4.26
36 37 1.160137 GTTCATTTCGGTGCTGAGCT 58.840 50.000 5.83 0.00 0.00 4.09
43 44 0.108186 TCGGTGCTGAGCTAACATGG 60.108 55.000 5.83 0.00 0.00 3.66
51 52 0.817654 GAGCTAACATGGGTTTGGCC 59.182 55.000 0.00 0.00 38.45 5.36
61 62 2.524306 TGGGTTTGGCCAGTCTTTATG 58.476 47.619 5.11 0.00 39.65 1.90
69 70 1.135286 GCCAGTCTTTATGCACAAGGC 60.135 52.381 4.23 4.23 45.13 4.35
74 75 6.000219 CCAGTCTTTATGCACAAGGCTATAT 59.000 40.000 13.00 0.00 45.15 0.86
106 107 8.037758 TGTTTCTCTCATTAGTCTTTCTCATCC 58.962 37.037 0.00 0.00 0.00 3.51
128 129 4.751600 CCTATCTCTCATTTTATGCGTGCA 59.248 41.667 0.00 0.00 0.00 4.57
131 132 3.125146 TCTCTCATTTTATGCGTGCACAC 59.875 43.478 18.64 7.98 0.00 3.82
148 149 4.985409 TGCACACGTTTTTCTTTTCTTGTT 59.015 33.333 0.00 0.00 0.00 2.83
151 152 6.848800 GCACACGTTTTTCTTTTCTTGTTTTT 59.151 30.769 0.00 0.00 0.00 1.94
152 153 7.057903 GCACACGTTTTTCTTTTCTTGTTTTTC 59.942 33.333 0.00 0.00 0.00 2.29
153 154 7.529185 CACACGTTTTTCTTTTCTTGTTTTTCC 59.471 33.333 0.00 0.00 0.00 3.13
154 155 7.439955 ACACGTTTTTCTTTTCTTGTTTTTCCT 59.560 29.630 0.00 0.00 0.00 3.36
156 157 8.279800 ACGTTTTTCTTTTCTTGTTTTTCCTTG 58.720 29.630 0.00 0.00 0.00 3.61
157 158 8.279800 CGTTTTTCTTTTCTTGTTTTTCCTTGT 58.720 29.630 0.00 0.00 0.00 3.16
158 159 9.381027 GTTTTTCTTTTCTTGTTTTTCCTTGTG 57.619 29.630 0.00 0.00 0.00 3.33
159 160 8.669946 TTTTCTTTTCTTGTTTTTCCTTGTGT 57.330 26.923 0.00 0.00 0.00 3.72
160 161 7.650834 TTCTTTTCTTGTTTTTCCTTGTGTG 57.349 32.000 0.00 0.00 0.00 3.82
161 162 6.754193 TCTTTTCTTGTTTTTCCTTGTGTGT 58.246 32.000 0.00 0.00 0.00 3.72
162 163 6.644592 TCTTTTCTTGTTTTTCCTTGTGTGTG 59.355 34.615 0.00 0.00 0.00 3.82
163 164 4.448537 TCTTGTTTTTCCTTGTGTGTGG 57.551 40.909 0.00 0.00 0.00 4.17
164 165 3.829601 TCTTGTTTTTCCTTGTGTGTGGT 59.170 39.130 0.00 0.00 0.00 4.16
175 176 5.047188 CCTTGTGTGTGGTTATTTGGTTTC 58.953 41.667 0.00 0.00 0.00 2.78
176 177 5.394663 CCTTGTGTGTGGTTATTTGGTTTCA 60.395 40.000 0.00 0.00 0.00 2.69
189 190 9.753669 GTTATTTGGTTTCAGTTTTCTGTTTTG 57.246 29.630 0.00 0.00 46.98 2.44
190 191 7.977789 ATTTGGTTTCAGTTTTCTGTTTTGT 57.022 28.000 0.00 0.00 46.98 2.83
191 192 6.777526 TTGGTTTCAGTTTTCTGTTTTGTG 57.222 33.333 0.00 0.00 46.98 3.33
192 193 5.848406 TGGTTTCAGTTTTCTGTTTTGTGT 58.152 33.333 0.00 0.00 46.98 3.72
193 194 6.284459 TGGTTTCAGTTTTCTGTTTTGTGTT 58.716 32.000 0.00 0.00 46.98 3.32
197 198 8.942924 GTTTCAGTTTTCTGTTTTGTGTTTTTG 58.057 29.630 0.00 0.00 46.98 2.44
240 242 8.994170 TCTTTTCGTTTTTCAGATTTGGTTTTT 58.006 25.926 0.00 0.00 0.00 1.94
244 246 9.640963 TTCGTTTTTCAGATTTGGTTTTTCTTA 57.359 25.926 0.00 0.00 0.00 2.10
519 543 9.544314 TGTAATACGCACATAACATTTGTTAAC 57.456 29.630 7.20 0.00 42.93 2.01
521 545 8.667987 AATACGCACATAACATTTGTTAACAG 57.332 30.769 8.56 0.00 42.93 3.16
622 646 5.001874 ACCTAGCTACTAAAAACAACAGCC 58.998 41.667 0.00 0.00 0.00 4.85
624 648 2.812011 AGCTACTAAAAACAACAGCCGG 59.188 45.455 0.00 0.00 0.00 6.13
625 649 2.551032 GCTACTAAAAACAACAGCCGGT 59.449 45.455 1.90 0.00 0.00 5.28
709 733 0.960364 TCCCATTTGCGCTGGACTTC 60.960 55.000 15.29 0.00 35.70 3.01
728 752 4.637873 GCGAACGCTCCTCCTATC 57.362 61.111 11.97 0.00 38.26 2.08
740 774 1.422531 CTCCTATCTGGGCTGAAGCT 58.577 55.000 1.74 0.00 41.70 3.74
776 810 4.753662 AGCTCCGGCCCACGTCTA 62.754 66.667 0.00 0.00 42.24 2.59
794 828 2.758979 TCTACAAAACCCCACGCAAAAA 59.241 40.909 0.00 0.00 0.00 1.94
1235 1599 2.125350 GGTGCTCGCCCTCTTCAG 60.125 66.667 0.00 0.00 0.00 3.02
1260 1624 3.330720 AGGGCTTCCAGAACCGGG 61.331 66.667 6.32 0.00 0.00 5.73
1311 1675 3.660501 TGCTACAACACTCTCGTCAAT 57.339 42.857 0.00 0.00 0.00 2.57
1359 1723 3.419759 GCCCACAACGCGTTCGAT 61.420 61.111 23.92 7.89 39.41 3.59
1469 1836 1.470805 CGCGTACAAGGTGATCATCCA 60.471 52.381 1.24 0.00 0.00 3.41
1497 1864 2.581354 CTCGGGGTGGAAGCTGAG 59.419 66.667 0.00 0.00 32.50 3.35
1866 2236 4.917385 TCTGCAAGAAAGGTATGGCTAAA 58.083 39.130 0.00 0.00 42.31 1.85
1871 2241 5.416013 GCAAGAAAGGTATGGCTAAAGAAGT 59.584 40.000 0.00 0.00 0.00 3.01
2050 2423 3.005554 GCATACAACACTGTGATGAGCT 58.994 45.455 22.55 5.18 36.96 4.09
2052 2425 1.233019 ACAACACTGTGATGAGCTGC 58.767 50.000 22.55 0.00 33.30 5.25
2081 2454 3.575506 TGGGACATTGGATGAGTGC 57.424 52.632 0.00 0.00 0.00 4.40
2490 2866 1.425066 AGTGGCAAAATCTGGGAGACA 59.575 47.619 0.00 0.00 0.00 3.41
2532 2911 6.620877 ATGGAAGAAAAAGGTTTTATCCCC 57.379 37.500 12.00 4.85 33.77 4.81
2537 2916 7.201794 GGAAGAAAAAGGTTTTATCCCCGATAG 60.202 40.741 6.54 0.00 30.84 2.08
2608 2987 5.867174 TGTCACGACACAGATATGTTTAAGG 59.133 40.000 0.00 0.00 36.21 2.69
2694 3073 2.948979 CCGGCAATAATTGAAGGTAGCA 59.051 45.455 0.00 0.00 0.00 3.49
3079 3461 5.229260 CGAAAGTTCTTGTGCCTAAACAAAC 59.771 40.000 0.00 0.00 39.47 2.93
3143 3525 6.047231 AGTAGTTATATTCGTTTGTCTGCCC 58.953 40.000 0.00 0.00 0.00 5.36
3173 3555 5.415701 TCAAGTAGGGATGCAAATTTCTGAC 59.584 40.000 0.00 0.00 0.00 3.51
3214 3596 3.876320 CCCTTGTTTGTTCAACCAAATGG 59.124 43.478 0.00 0.00 36.75 3.16
3323 5905 0.321564 TGCACCCCGATTCTCAAGTG 60.322 55.000 0.00 0.00 0.00 3.16
3400 5982 8.990163 ATATTTAACCATAGGTTACCTGTTGG 57.010 34.615 24.54 24.54 46.28 3.77
3425 6007 9.185680 GGTACTTGGAACCAATACTTTATGATT 57.814 33.333 6.74 0.00 36.96 2.57
3441 6024 9.178758 ACTTTATGATTTAAAGCCTTAGTCTGG 57.821 33.333 0.17 0.00 37.89 3.86
3544 6127 0.034380 ACGCCTCCTCTAGCACACTA 60.034 55.000 0.00 0.00 0.00 2.74
3545 6128 1.323412 CGCCTCCTCTAGCACACTAT 58.677 55.000 0.00 0.00 0.00 2.12
3546 6129 1.000827 CGCCTCCTCTAGCACACTATG 60.001 57.143 0.00 0.00 0.00 2.23
3620 6213 9.284968 CCTCATCTTTTACTCAGGTTTTCTTTA 57.715 33.333 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.436704 TCAGCACCGAAATGAACTCATTC 59.563 43.478 5.44 0.10 45.06 2.67
14 15 2.416747 CTCAGCACCGAAATGAACTCA 58.583 47.619 0.00 0.00 0.00 3.41
19 20 2.289382 TGTTAGCTCAGCACCGAAATGA 60.289 45.455 0.00 0.00 0.00 2.57
20 21 2.076100 TGTTAGCTCAGCACCGAAATG 58.924 47.619 0.00 0.00 0.00 2.32
30 31 1.474077 GCCAAACCCATGTTAGCTCAG 59.526 52.381 0.00 0.00 33.37 3.35
35 36 1.818674 GACTGGCCAAACCCATGTTAG 59.181 52.381 7.01 0.00 37.83 2.34
36 37 1.427368 AGACTGGCCAAACCCATGTTA 59.573 47.619 7.01 0.00 37.83 2.41
43 44 1.892474 TGCATAAAGACTGGCCAAACC 59.108 47.619 7.01 0.00 39.84 3.27
51 52 7.502120 AATATAGCCTTGTGCATAAAGACTG 57.498 36.000 12.36 0.00 44.83 3.51
92 93 9.653516 AAATGAGAGATAGGATGAGAAAGACTA 57.346 33.333 0.00 0.00 0.00 2.59
97 98 9.499479 GCATAAAATGAGAGATAGGATGAGAAA 57.501 33.333 0.00 0.00 0.00 2.52
106 107 5.234972 TGTGCACGCATAAAATGAGAGATAG 59.765 40.000 13.13 0.00 34.01 2.08
128 129 7.439955 AGGAAAAACAAGAAAAGAAAAACGTGT 59.560 29.630 0.00 0.00 0.00 4.49
131 132 8.279800 ACAAGGAAAAACAAGAAAAGAAAAACG 58.720 29.630 0.00 0.00 0.00 3.60
138 139 6.128580 CCACACACAAGGAAAAACAAGAAAAG 60.129 38.462 0.00 0.00 0.00 2.27
141 142 4.282195 ACCACACACAAGGAAAAACAAGAA 59.718 37.500 0.00 0.00 0.00 2.52
142 143 3.829601 ACCACACACAAGGAAAAACAAGA 59.170 39.130 0.00 0.00 0.00 3.02
143 144 4.186856 ACCACACACAAGGAAAAACAAG 57.813 40.909 0.00 0.00 0.00 3.16
144 145 4.608948 AACCACACACAAGGAAAAACAA 57.391 36.364 0.00 0.00 0.00 2.83
148 149 5.187967 ACCAAATAACCACACACAAGGAAAA 59.812 36.000 0.00 0.00 0.00 2.29
151 152 3.904717 ACCAAATAACCACACACAAGGA 58.095 40.909 0.00 0.00 0.00 3.36
152 153 4.664150 AACCAAATAACCACACACAAGG 57.336 40.909 0.00 0.00 0.00 3.61
153 154 5.655488 TGAAACCAAATAACCACACACAAG 58.345 37.500 0.00 0.00 0.00 3.16
154 155 5.186021 ACTGAAACCAAATAACCACACACAA 59.814 36.000 0.00 0.00 0.00 3.33
156 157 5.257082 ACTGAAACCAAATAACCACACAC 57.743 39.130 0.00 0.00 0.00 3.82
157 158 5.923733 AACTGAAACCAAATAACCACACA 57.076 34.783 0.00 0.00 0.00 3.72
158 159 7.010091 CAGAAAACTGAAACCAAATAACCACAC 59.990 37.037 0.00 0.00 0.00 3.82
159 160 7.038659 CAGAAAACTGAAACCAAATAACCACA 58.961 34.615 0.00 0.00 0.00 4.17
160 161 7.039270 ACAGAAAACTGAAACCAAATAACCAC 58.961 34.615 0.00 0.00 0.00 4.16
161 162 7.176589 ACAGAAAACTGAAACCAAATAACCA 57.823 32.000 0.00 0.00 0.00 3.67
162 163 8.487313 AAACAGAAAACTGAAACCAAATAACC 57.513 30.769 0.00 0.00 0.00 2.85
163 164 9.753669 CAAAACAGAAAACTGAAACCAAATAAC 57.246 29.630 0.00 0.00 0.00 1.89
164 165 9.495572 ACAAAACAGAAAACTGAAACCAAATAA 57.504 25.926 0.00 0.00 0.00 1.40
175 176 9.579610 CTAACAAAAACACAAAACAGAAAACTG 57.420 29.630 0.00 0.00 0.00 3.16
176 177 8.769891 CCTAACAAAAACACAAAACAGAAAACT 58.230 29.630 0.00 0.00 0.00 2.66
210 211 7.600752 ACCAAATCTGAAAAACGAAAAGACAAA 59.399 29.630 0.00 0.00 0.00 2.83
213 214 7.520119 AACCAAATCTGAAAAACGAAAAGAC 57.480 32.000 0.00 0.00 0.00 3.01
214 215 8.541133 AAAACCAAATCTGAAAAACGAAAAGA 57.459 26.923 0.00 0.00 0.00 2.52
244 246 9.768662 ACAAAATGTGAAAAGCAGAAGAAATAT 57.231 25.926 0.00 0.00 0.00 1.28
246 248 8.496707 AACAAAATGTGAAAAGCAGAAGAAAT 57.503 26.923 0.00 0.00 0.00 2.17
249 251 9.598517 AAATAACAAAATGTGAAAAGCAGAAGA 57.401 25.926 0.00 0.00 0.00 2.87
352 354 9.990360 TCATTGTATACTAGAACAAGTTTGACA 57.010 29.630 4.17 0.00 38.87 3.58
494 518 9.544314 TGTTAACAAATGTTATGTGCGTATTAC 57.456 29.630 5.64 0.13 39.89 1.89
499 523 6.140110 GTCTGTTAACAAATGTTATGTGCGT 58.860 36.000 10.03 0.00 39.89 5.24
501 525 8.427012 CAATGTCTGTTAACAAATGTTATGTGC 58.573 33.333 10.03 0.55 39.89 4.57
600 624 4.092968 CGGCTGTTGTTTTTAGTAGCTAGG 59.907 45.833 0.00 0.00 0.00 3.02
665 689 0.606401 CACTCTGCCCATGACCGTTT 60.606 55.000 0.00 0.00 0.00 3.60
701 725 1.347817 GAGCGTTCGCTGAAGTCCAG 61.348 60.000 23.98 0.00 45.67 3.86
709 733 0.318275 GATAGGAGGAGCGTTCGCTG 60.318 60.000 23.98 0.00 42.08 5.18
716 740 1.532794 AGCCCAGATAGGAGGAGCG 60.533 63.158 0.00 0.00 41.22 5.03
721 745 1.422531 AGCTTCAGCCCAGATAGGAG 58.577 55.000 0.00 0.00 43.38 3.69
722 746 1.885049 AAGCTTCAGCCCAGATAGGA 58.115 50.000 0.00 0.00 43.38 2.94
726 750 3.326297 GGAGTATAAGCTTCAGCCCAGAT 59.674 47.826 0.00 0.00 43.38 2.90
728 752 2.546795 CGGAGTATAAGCTTCAGCCCAG 60.547 54.545 0.00 0.00 43.38 4.45
740 774 2.937873 GCTGCAACCAACCGGAGTATAA 60.938 50.000 9.46 0.00 35.59 0.98
775 809 2.418334 GGTTTTTGCGTGGGGTTTTGTA 60.418 45.455 0.00 0.00 0.00 2.41
776 810 1.676314 GGTTTTTGCGTGGGGTTTTGT 60.676 47.619 0.00 0.00 0.00 2.83
1469 1836 2.348998 CCCCGAGCTCTTGCAACT 59.651 61.111 12.85 0.00 42.74 3.16
1723 2093 3.087031 CACACAAAGCCCTGATCAGAAT 58.913 45.455 24.62 6.39 0.00 2.40
1866 2236 4.040952 ACATCCAACTGCTCAAGTACTTCT 59.959 41.667 4.77 0.00 38.56 2.85
1871 2241 4.635765 GCATAACATCCAACTGCTCAAGTA 59.364 41.667 0.00 0.00 38.56 2.24
2050 2423 3.737559 ATGTCCCATTTCACCTAAGCA 57.262 42.857 0.00 0.00 0.00 3.91
2052 2425 4.599041 TCCAATGTCCCATTTCACCTAAG 58.401 43.478 0.00 0.00 0.00 2.18
2077 2450 4.811557 GTCTGTCAACAACTTTAGAGCACT 59.188 41.667 0.00 0.00 0.00 4.40
2081 2454 7.386025 TGATCATGTCTGTCAACAACTTTAGAG 59.614 37.037 0.00 0.00 31.81 2.43
2490 2866 7.840716 TCTTCCATTCCCTTGAATATGTGAATT 59.159 33.333 0.00 0.00 39.20 2.17
2532 2911 9.698309 ATTGTGAGGTCAAATATAGAACTATCG 57.302 33.333 0.00 0.00 32.05 2.92
2537 2916 8.948631 TCTGATTGTGAGGTCAAATATAGAAC 57.051 34.615 0.00 0.00 0.00 3.01
2608 2987 9.916397 CAACATCGTATCCAGAATAAAGTTAAC 57.084 33.333 0.00 0.00 0.00 2.01
2694 3073 7.659390 CACCAGAAGAACAGAAAGAAAGAGTAT 59.341 37.037 0.00 0.00 0.00 2.12
2796 3175 5.235616 TGGTTAGAACAAAGTTGCTAGTTCG 59.764 40.000 0.00 0.00 43.71 3.95
2802 3181 4.099266 TGCAATGGTTAGAACAAAGTTGCT 59.901 37.500 16.68 0.00 40.78 3.91
2857 3239 4.701765 ACAATTTGGCATGCAACACTTAA 58.298 34.783 21.36 0.00 0.00 1.85
3136 3518 0.606604 TACTTGAGAACCGGGCAGAC 59.393 55.000 6.32 0.00 0.00 3.51
3143 3525 1.207089 TGCATCCCTACTTGAGAACCG 59.793 52.381 0.00 0.00 0.00 4.44
3182 3564 1.133792 ACAAACAAGGGTCAGAGGGTG 60.134 52.381 0.00 0.00 0.00 4.61
3214 3596 9.736023 AAGTCACATCACTTTGAAAATTTAGTC 57.264 29.630 0.00 0.00 32.34 2.59
3323 5905 5.784177 TGAAAATCACTAGAGGTGTGTCTC 58.216 41.667 0.00 0.00 45.50 3.36
3384 5966 5.046159 TCCAAGTACCAACAGGTAACCTATG 60.046 44.000 0.00 0.00 39.51 2.23
3385 5967 5.095809 TCCAAGTACCAACAGGTAACCTAT 58.904 41.667 0.00 0.00 39.51 2.57
3544 6127 2.386661 AAGACCAACTCGAATCGCAT 57.613 45.000 0.00 0.00 0.00 4.73
3545 6128 2.163818 AAAGACCAACTCGAATCGCA 57.836 45.000 0.00 0.00 0.00 5.10
3546 6129 3.537793 AAAAAGACCAACTCGAATCGC 57.462 42.857 0.00 0.00 0.00 4.58
3548 6131 6.737254 TGGATAAAAAGACCAACTCGAATC 57.263 37.500 0.00 0.00 0.00 2.52
3589 6179 4.846940 ACCTGAGTAAAAGATGAGGGAGTT 59.153 41.667 0.00 0.00 0.00 3.01
3620 6213 9.167311 GTTCCTGAAATGTGAGATGTATAACTT 57.833 33.333 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.