Multiple sequence alignment - TraesCS1A01G117300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G117300 chr1A 100.000 4844 0 0 1 4844 124478419 124483262 0.000000e+00 8946
1 TraesCS1A01G117300 chr1A 93.750 176 11 0 1806 1981 124480035 124480210 1.030000e-66 265
2 TraesCS1A01G117300 chr1A 93.750 176 11 0 1617 1792 124480224 124480399 1.030000e-66 265
3 TraesCS1A01G117300 chr1A 90.566 159 15 0 1527 1685 124479579 124479737 1.370000e-50 211
4 TraesCS1A01G117300 chr1A 90.566 159 15 0 1161 1319 124479945 124480103 1.370000e-50 211
5 TraesCS1A01G117300 chr1B 95.624 2765 87 10 1992 4739 174988218 174990965 0.000000e+00 4405
6 TraesCS1A01G117300 chr1B 93.179 2243 103 18 1 2233 174986023 174988225 0.000000e+00 3249
7 TraesCS1A01G117300 chr1B 93.478 276 15 3 3901 4173 307151112 307150837 1.620000e-109 407
8 TraesCS1A01G117300 chr1B 94.350 177 10 0 1616 1792 174987815 174987991 6.180000e-69 272
9 TraesCS1A01G117300 chr1B 90.909 176 16 0 1806 1981 174987627 174987802 2.250000e-58 237
10 TraesCS1A01G117300 chr1B 89.241 158 17 0 1162 1319 174987538 174987695 1.060000e-46 198
11 TraesCS1A01G117300 chr1B 89.630 135 14 0 1527 1661 174987186 174987320 6.450000e-39 172
12 TraesCS1A01G117300 chr1B 94.286 70 4 0 1250 1319 174987815 174987884 1.840000e-19 108
13 TraesCS1A01G117300 chr1D 97.705 2135 45 3 1992 4122 114155310 114157444 0.000000e+00 3668
14 TraesCS1A01G117300 chr1D 91.913 2263 112 24 1 2233 114153096 114155317 0.000000e+00 3099
15 TraesCS1A01G117300 chr1D 96.910 356 11 0 4093 4448 114157445 114157800 8.970000e-167 597
16 TraesCS1A01G117300 chr1D 89.474 304 24 1 4447 4742 114163208 114163511 1.270000e-100 377
17 TraesCS1A01G117300 chr1D 93.714 175 11 0 1806 1980 114154701 114154875 3.720000e-66 263
18 TraesCS1A01G117300 chr1D 91.195 159 14 0 1161 1319 114154611 114154769 2.940000e-52 217
19 TraesCS1A01G117300 chr1D 89.937 159 16 0 1527 1685 114154245 114154403 6.360000e-49 206
20 TraesCS1A01G117300 chr1D 87.500 184 11 1 1616 1799 114154886 114155057 8.220000e-48 202
21 TraesCS1A01G117300 chr1D 87.603 121 7 2 4724 4844 114163523 114163635 3.040000e-27 134
22 TraesCS1A01G117300 chr5A 87.347 490 34 16 3692 4173 66097919 66097450 1.980000e-148 536
23 TraesCS1A01G117300 chr7A 87.110 481 34 16 3701 4173 450288013 450287553 2.000000e-143 520
24 TraesCS1A01G117300 chr7A 87.010 485 27 15 3692 4168 117820671 117821127 9.300000e-142 514
25 TraesCS1A01G117300 chr3B 93.007 286 15 4 3893 4173 146565497 146565782 3.490000e-111 412
26 TraesCS1A01G117300 chr3B 93.841 276 12 5 3901 4173 736001510 736001237 1.250000e-110 411
27 TraesCS1A01G117300 chr4B 91.154 260 13 6 3920 4173 45780590 45780335 1.290000e-90 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G117300 chr1A 124478419 124483262 4843 False 1979.600000 8946 93.726400 1 4844 5 chr1A.!!$F1 4843
1 TraesCS1A01G117300 chr1B 174986023 174990965 4942 False 1234.428571 4405 92.459857 1 4739 7 chr1B.!!$F1 4738
2 TraesCS1A01G117300 chr1D 114153096 114157800 4704 False 1178.857143 3668 92.696286 1 4448 7 chr1D.!!$F1 4447

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 414 0.264359 CTCTGGAGGAGAGGGGATGT 59.736 60.0 0.00 0.00 44.25 3.06 F
1004 1013 0.112025 TCCAATGTGTGTGCCATGGA 59.888 50.0 18.40 0.00 0.00 3.41 F
1634 1649 0.897621 GAAGGCAATTCACCCAAGGG 59.102 55.0 2.91 2.91 37.88 3.95 F
3438 3702 0.803768 AGCTGTTGCATAGCGACGAG 60.804 55.0 15.27 5.12 45.17 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1494 1509 0.976641 TCACAGAAGGTTCCGCATCT 59.023 50.000 0.0 0.00 0.00 2.90 R
2847 3111 1.345741 ACCACATGATAGAGCCCATCG 59.654 52.381 0.0 0.00 0.00 3.84 R
3539 3803 0.249784 CATGATCACAGAGCGAGGGG 60.250 60.000 0.0 0.00 0.00 4.79 R
4739 5050 0.103208 GCAGATAGCGGTGCTACACT 59.897 55.000 0.0 1.65 44.24 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.124901 CGCGGCTGGGGTATTTGA 60.125 61.111 0.00 0.00 0.00 2.69
132 138 1.302033 CTTTCCACAGCTCTGCGGT 60.302 57.895 4.10 0.00 37.46 5.68
184 190 0.915364 GCATCCACTTCCTCCTCCTT 59.085 55.000 0.00 0.00 0.00 3.36
185 191 2.119495 GCATCCACTTCCTCCTCCTTA 58.881 52.381 0.00 0.00 0.00 2.69
295 301 4.988716 ACGAGGAGGTGGCGGTGA 62.989 66.667 0.00 0.00 0.00 4.02
334 340 2.758327 CGGGAGGGGATGACGTCA 60.758 66.667 22.48 22.48 0.00 4.35
363 369 3.226884 CGATTTTGTCGGGGACAGT 57.773 52.632 0.00 0.00 46.47 3.55
408 414 0.264359 CTCTGGAGGAGAGGGGATGT 59.736 60.000 0.00 0.00 44.25 3.06
455 461 1.527380 GTTTGGAGTTCCCCACGCA 60.527 57.895 0.00 0.00 35.62 5.24
619 625 1.229145 AGCAGTGCCAGAGAGGAGT 60.229 57.895 12.58 0.00 41.22 3.85
662 668 3.620300 CTGGCAATGCTGGTGTGCG 62.620 63.158 4.82 0.00 39.22 5.34
668 674 4.854924 TGCTGGTGTGCGTGTGCT 62.855 61.111 0.00 0.00 43.34 4.40
735 741 2.611964 ATCATCGGGGTCCAGAGGCT 62.612 60.000 0.00 0.00 0.00 4.58
828 834 0.510359 CAATCTCGCGATTGCTAGCC 59.490 55.000 14.61 0.00 46.98 3.93
892 901 4.324991 GGAGGGACGCGGTGGTTT 62.325 66.667 12.47 0.00 0.00 3.27
900 909 2.829206 CGCGGTGGTTTCACTTGCA 61.829 57.895 0.00 0.00 43.17 4.08
914 923 0.959372 CTTGCAAGCAGAGGAGGTGG 60.959 60.000 14.65 0.00 0.00 4.61
919 928 0.472734 AAGCAGAGGAGGTGGTGAGT 60.473 55.000 0.00 0.00 0.00 3.41
920 929 0.902516 AGCAGAGGAGGTGGTGAGTC 60.903 60.000 0.00 0.00 0.00 3.36
922 931 1.617263 GCAGAGGAGGTGGTGAGTCTA 60.617 57.143 0.00 0.00 0.00 2.59
930 939 2.143925 GGTGGTGAGTCTAGTTTGCAC 58.856 52.381 0.00 0.00 0.00 4.57
933 942 3.495001 GTGGTGAGTCTAGTTTGCACTTC 59.505 47.826 0.00 0.00 34.06 3.01
1001 1010 0.597568 CGTTCCAATGTGTGTGCCAT 59.402 50.000 0.00 0.00 0.00 4.40
1002 1011 1.666599 CGTTCCAATGTGTGTGCCATG 60.667 52.381 0.00 0.00 0.00 3.66
1004 1013 0.112025 TCCAATGTGTGTGCCATGGA 59.888 50.000 18.40 0.00 0.00 3.41
1010 1025 1.350684 TGTGTGTGCCATGGACACTAT 59.649 47.619 30.51 0.00 43.50 2.12
1048 1063 6.565435 CGAGAATGCTTTGGATGCAATAGTAG 60.565 42.308 0.00 0.00 44.01 2.57
1050 1065 6.261826 AGAATGCTTTGGATGCAATAGTAGAC 59.738 38.462 0.00 1.01 44.01 2.59
1059 1074 5.047943 GGATGCAATAGTAGACGTACAGGAT 60.048 44.000 0.00 0.00 0.00 3.24
1220 1235 4.080863 GGAGAGTGTATCATGGGAAGTTGT 60.081 45.833 0.00 0.00 0.00 3.32
1306 1321 3.070748 GCTGAAGGTCCTCTGAAAGAAC 58.929 50.000 0.00 0.00 46.34 3.01
1333 1348 2.029623 GGGATACTACAGAAGCGGTCA 58.970 52.381 0.00 0.00 0.00 4.02
1377 1392 7.069578 GTGATAGTAGAGGTACAGGAATTGGAA 59.930 40.741 0.00 0.00 0.00 3.53
1494 1509 1.231221 GTGTTGTGCCGTCAATGGTA 58.769 50.000 0.00 0.00 0.00 3.25
1634 1649 0.897621 GAAGGCAATTCACCCAAGGG 59.102 55.000 2.91 2.91 37.88 3.95
1804 1819 4.693095 CAGCTAGAAAACCTTCTCCTGAAC 59.307 45.833 0.00 0.00 41.19 3.18
1813 1828 2.751806 CCTTCTCCTGAACAAGGCAATC 59.248 50.000 0.00 0.00 46.92 2.67
1816 1831 2.309755 TCTCCTGAACAAGGCAATCCAT 59.690 45.455 0.00 0.00 46.92 3.41
1876 1891 7.749666 TCTGAAAGAATATCTTGGGGATAAGG 58.250 38.462 0.00 0.00 42.31 2.69
1892 1907 6.296259 GGGGATAAGGAAGTGTCTGAAAGTTA 60.296 42.308 0.00 0.00 33.76 2.24
1897 1912 6.360370 AGGAAGTGTCTGAAAGTTATAGCA 57.640 37.500 0.00 0.00 33.76 3.49
2245 2509 5.105997 GCAATAGCTGTTCATGAAGGAAAGT 60.106 40.000 8.80 0.00 37.91 2.66
2424 2688 4.514441 AGAATTGATCTTGCCGCTGATAAG 59.486 41.667 0.00 0.00 33.39 1.73
2454 2718 4.461431 AGAAAATTACCGGGCTTTACCAAG 59.539 41.667 6.32 0.00 42.05 3.61
2504 2768 5.539979 TGGTGTTGAAATTGGTGATGAATG 58.460 37.500 0.00 0.00 0.00 2.67
2585 2849 8.685427 CATTGACACCACAAAGGATATTAATGA 58.315 33.333 0.00 0.00 41.22 2.57
2836 3100 3.480470 TCAAAGGCCAAAGAAGTCTCAG 58.520 45.455 5.01 0.00 0.00 3.35
2847 3111 8.657729 GCCAAAGAAGTCTCAGTATTTACTTAC 58.342 37.037 0.00 0.00 33.46 2.34
2922 3186 3.191371 GGGTCTTCAAATACAGGTTGCAG 59.809 47.826 0.00 0.00 0.00 4.41
2981 3245 4.273480 TGCTAAAGTGTTGAGAAAGTCTGC 59.727 41.667 0.00 0.00 0.00 4.26
3068 3332 5.593502 TGGTCAATAATATTGATGCTGCACA 59.406 36.000 17.48 2.37 0.00 4.57
3185 3449 0.952497 TCTGCTAGCTGTGCTTGTGC 60.952 55.000 17.23 1.77 40.44 4.57
3187 3451 1.232621 TGCTAGCTGTGCTTGTGCTG 61.233 55.000 17.23 0.00 40.44 4.41
3438 3702 0.803768 AGCTGTTGCATAGCGACGAG 60.804 55.000 15.27 5.12 45.17 4.18
3539 3803 1.620819 TCCAGGTCTGAGTTCTTCTGC 59.379 52.381 0.00 0.00 0.00 4.26
3554 3818 2.685017 TGCCCCTCGCTCTGTGAT 60.685 61.111 0.00 0.00 38.78 3.06
3585 3849 4.689612 TGATAGGGCCTTCACAATAGAC 57.310 45.455 13.45 0.00 0.00 2.59
3651 3915 1.139256 TCACCAAACCTCTACGCACAA 59.861 47.619 0.00 0.00 0.00 3.33
3671 3935 6.108015 CACAAAATATTCTTTGGGACCATGG 58.892 40.000 11.19 11.19 41.40 3.66
3675 3939 0.322456 TTCTTTGGGACCATGGCGAG 60.322 55.000 13.04 1.00 0.00 5.03
3857 4121 5.295152 GCTTTATTAAGGCGTAGAAGGCTA 58.705 41.667 0.00 0.00 46.87 3.93
4062 4331 6.430000 GGCAAAGACTAAAGAGGTTGTGATTA 59.570 38.462 0.00 0.00 0.00 1.75
4079 4348 7.302350 TGTGATTATGTTATTCTGTTGTCCG 57.698 36.000 0.00 0.00 0.00 4.79
4090 4359 1.135083 CTGTTGTCCGCCTACTACAGG 60.135 57.143 15.37 0.00 44.37 4.00
4138 4437 2.376518 TGAATTGCCTGGAGAGGTTTCT 59.623 45.455 0.00 0.00 42.15 2.52
4174 4473 4.260907 CCGTGATTTCTACATTGCAGGATG 60.261 45.833 0.00 0.00 40.87 3.51
4218 4517 3.431572 CCAAAATTGGTTTATGTGCCACG 59.568 43.478 3.95 0.00 43.43 4.94
4284 4583 4.335416 CCATCCTGAACTTGAAAGGCTTA 58.665 43.478 0.00 0.00 0.00 3.09
4388 4691 8.350852 AGGGAGTATATGTTTCTAGGTATTCG 57.649 38.462 0.00 0.00 0.00 3.34
4400 4703 6.971726 TCTAGGTATTCGGTTCATGTATGT 57.028 37.500 0.00 0.00 0.00 2.29
4452 4755 4.142447 ACATGCTATCGGTGATATCGTACC 60.142 45.833 2.70 2.70 0.00 3.34
4453 4756 3.414269 TGCTATCGGTGATATCGTACCA 58.586 45.455 11.63 1.53 36.76 3.25
4462 4765 7.031372 TCGGTGATATCGTACCAAATATTAGC 58.969 38.462 11.63 0.00 36.76 3.09
4472 4775 7.604927 TCGTACCAAATATTAGCCCAACATATC 59.395 37.037 0.00 0.00 0.00 1.63
4474 4777 6.539173 ACCAAATATTAGCCCAACATATCGA 58.461 36.000 0.00 0.00 0.00 3.59
4477 4780 7.822334 CCAAATATTAGCCCAACATATCGACTA 59.178 37.037 0.00 0.00 0.00 2.59
4499 4802 1.673920 GACTAGAGACGCTGGAGGAAG 59.326 57.143 0.00 0.00 0.00 3.46
4502 4805 0.968393 AGAGACGCTGGAGGAAGACC 60.968 60.000 0.00 0.00 0.00 3.85
4526 4829 6.294397 CCTCATGCAAATTCTTATTAGCCTCC 60.294 42.308 0.00 0.00 0.00 4.30
4527 4830 6.128486 TCATGCAAATTCTTATTAGCCTCCA 58.872 36.000 0.00 0.00 0.00 3.86
4567 4878 5.700832 CCTGTATCACTTGCAACTTGAACTA 59.299 40.000 9.50 0.00 0.00 2.24
4590 4901 5.689819 AGAATTCAAGTTCCGAAATCGTTG 58.310 37.500 8.44 0.39 37.74 4.10
4597 4908 3.875134 AGTTCCGAAATCGTTGTGTCTTT 59.125 39.130 1.79 0.00 37.74 2.52
4666 4977 9.346005 TGAATGAATAACTGATGTTGCATCTAT 57.654 29.630 10.02 0.00 37.59 1.98
4680 4991 3.958147 TGCATCTATCCCTAGTTCGACAA 59.042 43.478 0.00 0.00 0.00 3.18
4696 5007 2.348218 CGACAACCACTTTACTTGACGC 60.348 50.000 0.00 0.00 0.00 5.19
4703 5014 2.408704 CACTTTACTTGACGCGAAGAGG 59.591 50.000 15.93 0.80 0.00 3.69
4728 5039 8.609176 GGTGAAAAAGAAAGGGTTGTAAAAATC 58.391 33.333 0.00 0.00 0.00 2.17
4732 5043 3.830178 AGAAAGGGTTGTAAAAATCGGGG 59.170 43.478 0.00 0.00 0.00 5.73
4739 5050 6.099413 AGGGTTGTAAAAATCGGGGTTTTTAA 59.901 34.615 10.30 0.00 42.12 1.52
4740 5051 6.424509 GGGTTGTAAAAATCGGGGTTTTTAAG 59.575 38.462 10.30 0.00 42.12 1.85
4741 5052 6.985645 GGTTGTAAAAATCGGGGTTTTTAAGT 59.014 34.615 10.30 0.00 42.12 2.24
4742 5053 7.042590 GGTTGTAAAAATCGGGGTTTTTAAGTG 60.043 37.037 10.30 0.00 42.12 3.16
4743 5054 7.110043 TGTAAAAATCGGGGTTTTTAAGTGT 57.890 32.000 10.30 0.00 42.12 3.55
4744 5055 8.230472 TGTAAAAATCGGGGTTTTTAAGTGTA 57.770 30.769 10.30 0.00 42.12 2.90
4745 5056 8.351461 TGTAAAAATCGGGGTTTTTAAGTGTAG 58.649 33.333 10.30 0.00 42.12 2.74
4746 5057 5.381174 AAATCGGGGTTTTTAAGTGTAGC 57.619 39.130 0.00 0.00 0.00 3.58
4747 5058 3.488778 TCGGGGTTTTTAAGTGTAGCA 57.511 42.857 0.00 0.00 0.00 3.49
4748 5059 3.140623 TCGGGGTTTTTAAGTGTAGCAC 58.859 45.455 0.00 0.00 34.10 4.40
4749 5060 2.227149 CGGGGTTTTTAAGTGTAGCACC 59.773 50.000 0.00 0.00 34.49 5.01
4750 5061 2.227149 GGGGTTTTTAAGTGTAGCACCG 59.773 50.000 0.00 0.00 34.49 4.94
4751 5062 2.351060 GGGTTTTTAAGTGTAGCACCGC 60.351 50.000 0.00 0.00 34.49 5.68
4752 5063 2.551032 GGTTTTTAAGTGTAGCACCGCT 59.449 45.455 0.00 0.00 43.41 5.52
4753 5064 3.747529 GGTTTTTAAGTGTAGCACCGCTA 59.252 43.478 0.00 0.00 40.44 4.26
4754 5065 4.393990 GGTTTTTAAGTGTAGCACCGCTAT 59.606 41.667 0.00 0.00 43.30 2.97
4755 5066 5.446875 GGTTTTTAAGTGTAGCACCGCTATC 60.447 44.000 0.00 0.00 43.30 2.08
4756 5067 4.730949 TTTAAGTGTAGCACCGCTATCT 57.269 40.909 0.00 0.00 43.30 1.98
4757 5068 2.586258 AAGTGTAGCACCGCTATCTG 57.414 50.000 0.00 0.00 43.30 2.90
4758 5069 0.103208 AGTGTAGCACCGCTATCTGC 59.897 55.000 0.00 0.00 43.30 4.26
4771 5082 3.372954 GCTATCTGCGTCGACTTATTGT 58.627 45.455 14.70 0.00 0.00 2.71
4772 5083 4.534168 GCTATCTGCGTCGACTTATTGTA 58.466 43.478 14.70 0.00 0.00 2.41
4773 5084 4.379204 GCTATCTGCGTCGACTTATTGTAC 59.621 45.833 14.70 0.00 0.00 2.90
4774 5085 3.835378 TCTGCGTCGACTTATTGTACA 57.165 42.857 14.70 0.00 0.00 2.90
4775 5086 4.163458 TCTGCGTCGACTTATTGTACAA 57.837 40.909 11.41 11.41 0.00 2.41
4776 5087 4.548494 TCTGCGTCGACTTATTGTACAAA 58.452 39.130 13.23 0.00 0.00 2.83
4777 5088 5.165676 TCTGCGTCGACTTATTGTACAAAT 58.834 37.500 13.23 4.23 0.00 2.32
4778 5089 5.636121 TCTGCGTCGACTTATTGTACAAATT 59.364 36.000 13.23 0.00 0.00 1.82
4779 5090 5.613812 TGCGTCGACTTATTGTACAAATTG 58.386 37.500 13.23 7.84 0.00 2.32
4780 5091 5.019498 GCGTCGACTTATTGTACAAATTGG 58.981 41.667 13.23 6.09 0.00 3.16
4781 5092 5.163933 GCGTCGACTTATTGTACAAATTGGA 60.164 40.000 13.23 3.15 0.00 3.53
4782 5093 6.456449 GCGTCGACTTATTGTACAAATTGGAT 60.456 38.462 13.23 0.00 0.00 3.41
4783 5094 7.117454 CGTCGACTTATTGTACAAATTGGATC 58.883 38.462 13.23 5.31 0.00 3.36
4784 5095 7.117454 GTCGACTTATTGTACAAATTGGATCG 58.883 38.462 13.23 15.85 0.00 3.69
4785 5096 6.256975 TCGACTTATTGTACAAATTGGATCGG 59.743 38.462 13.23 3.79 0.00 4.18
4786 5097 6.256975 CGACTTATTGTACAAATTGGATCGGA 59.743 38.462 13.23 0.00 0.00 4.55
4787 5098 7.516785 CGACTTATTGTACAAATTGGATCGGAG 60.517 40.741 13.23 1.91 0.00 4.63
4788 5099 7.110155 ACTTATTGTACAAATTGGATCGGAGT 58.890 34.615 13.23 2.47 0.00 3.85
4789 5100 7.610305 ACTTATTGTACAAATTGGATCGGAGTT 59.390 33.333 13.23 0.00 0.00 3.01
4790 5101 6.834168 ATTGTACAAATTGGATCGGAGTTT 57.166 33.333 13.23 0.00 0.00 2.66
4791 5102 6.642707 TTGTACAAATTGGATCGGAGTTTT 57.357 33.333 5.64 0.00 0.00 2.43
4792 5103 6.642707 TGTACAAATTGGATCGGAGTTTTT 57.357 33.333 0.00 0.00 0.00 1.94
4793 5104 6.674066 TGTACAAATTGGATCGGAGTTTTTC 58.326 36.000 0.00 0.00 0.00 2.29
4794 5105 5.782893 ACAAATTGGATCGGAGTTTTTCA 57.217 34.783 0.00 0.00 0.00 2.69
4795 5106 6.155475 ACAAATTGGATCGGAGTTTTTCAA 57.845 33.333 0.00 0.00 0.00 2.69
4796 5107 5.983118 ACAAATTGGATCGGAGTTTTTCAAC 59.017 36.000 0.00 0.00 0.00 3.18
4797 5108 5.782893 AATTGGATCGGAGTTTTTCAACA 57.217 34.783 0.00 0.00 35.05 3.33
4798 5109 5.982890 ATTGGATCGGAGTTTTTCAACAT 57.017 34.783 0.00 0.00 35.05 2.71
4799 5110 4.764679 TGGATCGGAGTTTTTCAACATG 57.235 40.909 0.00 0.00 35.05 3.21
4800 5111 3.505680 TGGATCGGAGTTTTTCAACATGG 59.494 43.478 0.00 0.00 35.05 3.66
4801 5112 3.501950 GATCGGAGTTTTTCAACATGGC 58.498 45.455 0.00 0.00 35.05 4.40
4802 5113 2.302260 TCGGAGTTTTTCAACATGGCA 58.698 42.857 0.00 0.00 35.05 4.92
4803 5114 2.034053 TCGGAGTTTTTCAACATGGCAC 59.966 45.455 0.00 0.00 35.05 5.01
4804 5115 2.034558 CGGAGTTTTTCAACATGGCACT 59.965 45.455 0.00 0.00 35.05 4.40
4805 5116 3.490761 CGGAGTTTTTCAACATGGCACTT 60.491 43.478 0.00 0.00 35.05 3.16
4806 5117 4.441792 GGAGTTTTTCAACATGGCACTTT 58.558 39.130 0.00 0.00 35.05 2.66
4807 5118 4.875536 GGAGTTTTTCAACATGGCACTTTT 59.124 37.500 0.00 0.00 35.05 2.27
4808 5119 5.353956 GGAGTTTTTCAACATGGCACTTTTT 59.646 36.000 0.00 0.00 35.05 1.94
4809 5120 6.180771 AGTTTTTCAACATGGCACTTTTTG 57.819 33.333 0.00 0.00 35.05 2.44
4810 5121 4.792702 GTTTTTCAACATGGCACTTTTTGC 59.207 37.500 0.00 0.00 40.67 3.68
4821 5132 2.979813 GCACTTTTTGCCAAGTATGACG 59.020 45.455 0.00 0.00 46.63 4.35
4822 5133 2.979813 CACTTTTTGCCAAGTATGACGC 59.020 45.455 0.00 0.00 35.10 5.19
4823 5134 2.884639 ACTTTTTGCCAAGTATGACGCT 59.115 40.909 0.00 0.00 35.10 5.07
4824 5135 2.987413 TTTTGCCAAGTATGACGCTG 57.013 45.000 0.00 0.00 0.00 5.18
4825 5136 0.521291 TTTGCCAAGTATGACGCTGC 59.479 50.000 0.00 0.00 0.00 5.25
4826 5137 0.605050 TTGCCAAGTATGACGCTGCA 60.605 50.000 0.00 0.00 0.00 4.41
4827 5138 0.605050 TGCCAAGTATGACGCTGCAA 60.605 50.000 0.00 0.00 0.00 4.08
4828 5139 0.521291 GCCAAGTATGACGCTGCAAA 59.479 50.000 0.00 0.00 0.00 3.68
4829 5140 1.729149 GCCAAGTATGACGCTGCAAAC 60.729 52.381 0.00 0.00 0.00 2.93
4830 5141 1.806542 CCAAGTATGACGCTGCAAACT 59.193 47.619 0.00 0.00 0.00 2.66
4831 5142 2.226437 CCAAGTATGACGCTGCAAACTT 59.774 45.455 0.00 0.00 0.00 2.66
4832 5143 3.482786 CAAGTATGACGCTGCAAACTTC 58.517 45.455 0.00 0.00 0.00 3.01
4833 5144 1.726791 AGTATGACGCTGCAAACTTCG 59.273 47.619 0.00 0.00 0.00 3.79
4834 5145 1.459592 GTATGACGCTGCAAACTTCGT 59.540 47.619 0.00 0.00 37.92 3.85
4835 5146 4.800166 GACGCTGCAAACTTCGTC 57.200 55.556 0.00 8.55 43.23 4.20
4836 5147 2.226269 GACGCTGCAAACTTCGTCT 58.774 52.632 13.91 0.00 45.31 4.18
4837 5148 0.582005 GACGCTGCAAACTTCGTCTT 59.418 50.000 13.91 0.00 45.31 3.01
4838 5149 1.003866 GACGCTGCAAACTTCGTCTTT 60.004 47.619 13.91 0.00 45.31 2.52
4839 5150 1.400494 ACGCTGCAAACTTCGTCTTTT 59.600 42.857 0.00 0.00 0.00 2.27
4840 5151 1.775208 CGCTGCAAACTTCGTCTTTTG 59.225 47.619 0.00 0.00 36.06 2.44
4841 5152 2.538737 CGCTGCAAACTTCGTCTTTTGA 60.539 45.455 0.00 0.00 35.13 2.69
4842 5153 2.783832 GCTGCAAACTTCGTCTTTTGAC 59.216 45.455 0.00 0.00 45.55 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.849329 GGTCGATCGACGCGCCTT 62.849 66.667 34.69 0.00 45.41 4.35
154 160 3.700970 TGGATGCGGCGAAGGTCA 61.701 61.111 12.98 0.00 0.00 4.02
278 284 4.988716 TCACCGCCACCTCCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
295 301 4.509580 AACCGCAACCCCAACCGT 62.510 61.111 0.00 0.00 0.00 4.83
297 303 4.293648 GCAACCGCAACCCCAACC 62.294 66.667 0.00 0.00 38.36 3.77
298 304 4.639171 CGCAACCGCAACCCCAAC 62.639 66.667 0.00 0.00 38.40 3.77
330 336 2.672908 AATCGCCGGATACCGTGACG 62.673 60.000 5.05 0.00 46.80 4.35
334 340 0.108041 ACAAAATCGCCGGATACCGT 60.108 50.000 5.05 0.00 46.80 4.83
347 353 1.234615 CGCACTGTCCCCGACAAAAT 61.235 55.000 0.00 0.00 42.26 1.82
408 414 2.992689 TGTAGTTCGCCGCCTCCA 60.993 61.111 0.00 0.00 0.00 3.86
417 423 1.751924 CCCCTCTTCCTCTGTAGTTCG 59.248 57.143 0.00 0.00 0.00 3.95
647 653 2.429571 CACGCACACCAGCATTGC 60.430 61.111 0.00 0.00 0.00 3.56
656 662 1.835483 CTTCTCCAGCACACGCACAC 61.835 60.000 0.00 0.00 42.27 3.82
662 668 0.394565 AGTCACCTTCTCCAGCACAC 59.605 55.000 0.00 0.00 0.00 3.82
668 674 1.345741 CAGAAGCAGTCACCTTCTCCA 59.654 52.381 0.97 0.00 45.29 3.86
681 687 2.747460 GCGCCACCATCAGAAGCA 60.747 61.111 0.00 0.00 0.00 3.91
691 697 4.314440 TGACACTGGAGCGCCACC 62.314 66.667 4.49 9.31 39.92 4.61
735 741 2.387445 CGAAGATTTCACCGCCGCA 61.387 57.895 0.00 0.00 0.00 5.69
740 746 0.657840 GCCATCCGAAGATTTCACCG 59.342 55.000 0.00 0.00 0.00 4.94
828 834 1.875576 GCAGATATCACCCTCCGCTTG 60.876 57.143 5.32 0.00 0.00 4.01
838 844 1.498865 CGGCGGTTGGCAGATATCAC 61.499 60.000 5.32 0.00 46.16 3.06
884 890 0.594796 GCTTGCAAGTGAAACCACCG 60.595 55.000 26.55 0.00 37.80 4.94
889 898 1.949525 TCCTCTGCTTGCAAGTGAAAC 59.050 47.619 26.55 10.85 0.00 2.78
892 901 0.035881 CCTCCTCTGCTTGCAAGTGA 59.964 55.000 26.55 21.85 0.00 3.41
900 909 0.472734 ACTCACCACCTCCTCTGCTT 60.473 55.000 0.00 0.00 0.00 3.91
914 923 3.639538 TCGAAGTGCAAACTAGACTCAC 58.360 45.455 0.00 0.00 0.00 3.51
919 928 2.413837 GGCTTCGAAGTGCAAACTAGA 58.586 47.619 25.24 0.00 0.00 2.43
920 929 1.464997 GGGCTTCGAAGTGCAAACTAG 59.535 52.381 25.24 0.00 0.00 2.57
922 931 0.179018 AGGGCTTCGAAGTGCAAACT 60.179 50.000 25.24 11.99 0.00 2.66
930 939 2.124942 GGAGGCAGGGCTTCGAAG 60.125 66.667 21.02 21.02 35.44 3.79
950 959 1.066716 CCAATGCACCCAAATCACCAG 60.067 52.381 0.00 0.00 0.00 4.00
956 965 1.560505 GTCCTCCAATGCACCCAAAT 58.439 50.000 0.00 0.00 0.00 2.32
982 991 2.028936 TGGCACACACATTGGAACG 58.971 52.632 0.00 0.00 0.00 3.95
1001 1010 2.688446 CTGACCGCTTCTATAGTGTCCA 59.312 50.000 0.00 0.00 32.26 4.02
1002 1011 2.544069 GCTGACCGCTTCTATAGTGTCC 60.544 54.545 0.00 0.00 35.14 4.02
1004 1013 1.065701 CGCTGACCGCTTCTATAGTGT 59.934 52.381 0.00 0.00 36.13 3.55
1010 1025 1.103803 ATTCTCGCTGACCGCTTCTA 58.896 50.000 0.00 0.00 36.73 2.10
1048 1063 1.950909 CTCCTCCAGATCCTGTACGTC 59.049 57.143 0.00 0.00 0.00 4.34
1050 1065 1.323412 CCTCCTCCAGATCCTGTACG 58.677 60.000 0.00 0.00 0.00 3.67
1059 1074 1.343478 GGAATCTCACCCTCCTCCAGA 60.343 57.143 0.00 0.00 0.00 3.86
1220 1235 5.868454 TGTTCATCACCTTGAGATCTTCAA 58.132 37.500 0.00 2.18 43.40 2.69
1292 1307 4.006319 CCCAAGATGTTCTTTCAGAGGAC 58.994 47.826 0.00 0.00 33.78 3.85
1306 1321 4.636249 GCTTCTGTAGTATCCCCAAGATG 58.364 47.826 0.00 0.00 36.33 2.90
1353 1368 7.506261 TCTTCCAATTCCTGTACCTCTACTATC 59.494 40.741 0.00 0.00 0.00 2.08
1377 1392 2.683867 CTCCGTACGAATCTCACCTTCT 59.316 50.000 18.76 0.00 0.00 2.85
1494 1509 0.976641 TCACAGAAGGTTCCGCATCT 59.023 50.000 0.00 0.00 0.00 2.90
1563 1578 4.383552 GCAACTTCCCATGATACACTCTCT 60.384 45.833 0.00 0.00 0.00 3.10
1634 1649 2.027192 TCAGGAGGAGGTTTACATGCAC 60.027 50.000 0.00 0.00 0.00 4.57
1804 1819 1.117150 CCCTTGGATGGATTGCCTTG 58.883 55.000 0.00 0.00 34.31 3.61
1813 1828 3.279434 GTTTACTAGCACCCTTGGATGG 58.721 50.000 0.00 0.00 0.00 3.51
1816 1831 2.627933 AGGTTTACTAGCACCCTTGGA 58.372 47.619 3.27 0.00 32.92 3.53
1876 1891 7.834068 TCATGCTATAACTTTCAGACACTTC 57.166 36.000 0.00 0.00 0.00 3.01
1892 1907 4.450305 AGAGATGCCCTTTTCATGCTAT 57.550 40.909 0.00 0.00 0.00 2.97
2424 2688 3.883489 AGCCCGGTAATTTTCTGATTAGC 59.117 43.478 0.00 0.00 36.90 3.09
2504 2768 5.974108 TGGCCAACTCTACTCTGTATAAAC 58.026 41.667 0.61 0.00 0.00 2.01
2547 2811 2.357154 GGTGTCAATGCCTCCTTGGTAT 60.357 50.000 0.00 0.00 43.19 2.73
2836 3100 7.600065 TGATAGAGCCCATCGTAAGTAAATAC 58.400 38.462 0.00 0.00 39.48 1.89
2847 3111 1.345741 ACCACATGATAGAGCCCATCG 59.654 52.381 0.00 0.00 0.00 3.84
2981 3245 4.227134 ATAGGCCAGGACGCGCTG 62.227 66.667 5.73 6.36 0.00 5.18
2997 3261 5.055144 CCTTGCGATATATCTGCTATGCAT 58.945 41.667 21.67 3.79 38.13 3.96
3115 3379 3.572584 CCTGATGACTTCTTTTTGCAGC 58.427 45.455 0.00 0.00 0.00 5.25
3185 3449 4.880696 GGAATTCTCCTCCATTCTTCACAG 59.119 45.833 5.23 0.00 38.88 3.66
3187 3451 4.203226 GGGAATTCTCCTCCATTCTTCAC 58.797 47.826 5.23 0.00 42.05 3.18
3348 3612 2.781174 TCTTACACCCCAACCTGTCTTT 59.219 45.455 0.00 0.00 0.00 2.52
3438 3702 3.557595 CGTCATTCATTCTCTGGTTAGCC 59.442 47.826 0.00 0.00 0.00 3.93
3539 3803 0.249784 CATGATCACAGAGCGAGGGG 60.250 60.000 0.00 0.00 0.00 4.79
3554 3818 0.976641 GGCCCTATCATCGTCCATGA 59.023 55.000 0.00 0.00 46.01 3.07
3585 3849 4.389992 CCAATATTACCATACTCAGCTGCG 59.610 45.833 9.47 5.22 0.00 5.18
3651 3915 3.384467 CGCCATGGTCCCAAAGAATATTT 59.616 43.478 14.67 0.00 0.00 1.40
3671 3935 1.639298 ATGCGGCACTCTTTTCTCGC 61.639 55.000 4.03 0.00 42.90 5.03
3675 3939 3.313526 ACATGATATGCGGCACTCTTTTC 59.686 43.478 4.03 0.00 0.00 2.29
4062 4331 3.350219 AGGCGGACAACAGAATAACAT 57.650 42.857 0.00 0.00 0.00 2.71
4079 4348 2.667470 TCATGAGGTCCTGTAGTAGGC 58.333 52.381 0.00 0.00 46.87 3.93
4138 4437 3.671008 AATCACGGTACTTGTACTGCA 57.329 42.857 16.91 6.96 0.00 4.41
4174 4473 3.808174 GTCGCAATTACCTCCATAGTTCC 59.192 47.826 0.00 0.00 0.00 3.62
4218 4517 4.058817 CAGCGGAGGAGTAAAATATGACC 58.941 47.826 0.00 0.00 0.00 4.02
4360 4663 9.670442 AATACCTAGAAACATATACTCCCTTCA 57.330 33.333 0.00 0.00 0.00 3.02
4362 4665 8.804204 CGAATACCTAGAAACATATACTCCCTT 58.196 37.037 0.00 0.00 0.00 3.95
4388 4691 8.839310 ATAGCAGAGAAATACATACATGAACC 57.161 34.615 0.00 0.00 0.00 3.62
4400 4703 7.010183 GTGTAAGACGCAAATAGCAGAGAAATA 59.990 37.037 0.00 0.00 46.13 1.40
4452 4755 7.672983 AGTCGATATGTTGGGCTAATATTTG 57.327 36.000 0.00 0.00 0.00 2.32
4453 4756 9.383519 CATAGTCGATATGTTGGGCTAATATTT 57.616 33.333 0.00 0.00 37.15 1.40
4462 4765 6.655425 TCTCTAGTCATAGTCGATATGTTGGG 59.345 42.308 11.89 4.92 41.82 4.12
4472 4775 2.222213 CCAGCGTCTCTAGTCATAGTCG 59.778 54.545 0.00 0.00 0.00 4.18
4474 4777 3.472652 CTCCAGCGTCTCTAGTCATAGT 58.527 50.000 0.00 0.00 0.00 2.12
4477 4780 1.213182 TCCTCCAGCGTCTCTAGTCAT 59.787 52.381 0.00 0.00 0.00 3.06
4499 4802 6.264067 AGGCTAATAAGAATTTGCATGAGGTC 59.736 38.462 0.00 0.00 43.12 3.85
4502 4805 6.263842 TGGAGGCTAATAAGAATTTGCATGAG 59.736 38.462 0.00 0.00 43.12 2.90
4504 4807 6.395426 TGGAGGCTAATAAGAATTTGCATG 57.605 37.500 6.82 0.00 43.12 4.06
4505 4808 5.010415 GCTGGAGGCTAATAAGAATTTGCAT 59.990 40.000 6.82 0.12 43.12 3.96
4508 4811 5.591877 ACTGCTGGAGGCTAATAAGAATTTG 59.408 40.000 0.14 0.00 42.39 2.32
4531 4834 0.375106 GATACAGGCTGCGCAGAAAC 59.625 55.000 40.21 27.01 0.00 2.78
4533 4836 0.740868 GTGATACAGGCTGCGCAGAA 60.741 55.000 40.21 18.95 0.00 3.02
4567 4878 5.238650 ACAACGATTTCGGAACTTGAATTCT 59.761 36.000 7.05 0.00 44.95 2.40
4597 4908 7.227711 TGGATCAGTTAATTTTCGACAGTCAAA 59.772 33.333 0.41 0.00 0.00 2.69
4642 4953 8.790718 GGATAGATGCAACATCAGTTATTCATT 58.209 33.333 10.02 0.00 35.85 2.57
4666 4977 2.005370 AGTGGTTGTCGAACTAGGGA 57.995 50.000 0.00 0.00 32.15 4.20
4680 4991 2.132762 CTTCGCGTCAAGTAAAGTGGT 58.867 47.619 5.77 0.00 0.00 4.16
4696 5007 3.883489 ACCCTTTCTTTTTCACCTCTTCG 59.117 43.478 0.00 0.00 0.00 3.79
4703 5014 8.325282 CGATTTTTACAACCCTTTCTTTTTCAC 58.675 33.333 0.00 0.00 0.00 3.18
4728 5039 2.227149 GGTGCTACACTTAAAAACCCCG 59.773 50.000 0.00 0.00 34.40 5.73
4732 5043 3.891056 AGCGGTGCTACACTTAAAAAC 57.109 42.857 0.00 0.00 36.99 2.43
4739 5050 0.103208 GCAGATAGCGGTGCTACACT 59.897 55.000 0.00 1.65 44.24 3.55
4740 5051 2.594541 GCAGATAGCGGTGCTACAC 58.405 57.895 0.00 0.00 44.24 2.90
4750 5061 3.372954 ACAATAAGTCGACGCAGATAGC 58.627 45.455 10.46 0.00 40.87 2.97
4751 5062 5.507974 TGTACAATAAGTCGACGCAGATAG 58.492 41.667 10.46 1.12 0.00 2.08
4752 5063 5.488645 TGTACAATAAGTCGACGCAGATA 57.511 39.130 10.46 0.49 0.00 1.98
4753 5064 4.365899 TGTACAATAAGTCGACGCAGAT 57.634 40.909 10.46 0.00 0.00 2.90
4754 5065 3.835378 TGTACAATAAGTCGACGCAGA 57.165 42.857 10.46 0.00 0.00 4.26
4755 5066 4.896562 TTTGTACAATAAGTCGACGCAG 57.103 40.909 9.56 2.57 0.00 5.18
4756 5067 5.390040 CCAATTTGTACAATAAGTCGACGCA 60.390 40.000 9.56 1.86 0.00 5.24
4757 5068 5.019498 CCAATTTGTACAATAAGTCGACGC 58.981 41.667 9.56 0.00 0.00 5.19
4758 5069 6.397831 TCCAATTTGTACAATAAGTCGACG 57.602 37.500 9.56 0.00 0.00 5.12
4759 5070 7.117454 CGATCCAATTTGTACAATAAGTCGAC 58.883 38.462 9.56 7.70 0.00 4.20
4760 5071 6.256975 CCGATCCAATTTGTACAATAAGTCGA 59.743 38.462 20.34 9.93 0.00 4.20
4761 5072 6.256975 TCCGATCCAATTTGTACAATAAGTCG 59.743 38.462 9.56 13.52 0.00 4.18
4762 5073 7.280205 ACTCCGATCCAATTTGTACAATAAGTC 59.720 37.037 9.56 3.15 0.00 3.01
4763 5074 7.110155 ACTCCGATCCAATTTGTACAATAAGT 58.890 34.615 9.56 0.00 0.00 2.24
4764 5075 7.553881 ACTCCGATCCAATTTGTACAATAAG 57.446 36.000 9.56 2.12 0.00 1.73
4765 5076 7.931578 AACTCCGATCCAATTTGTACAATAA 57.068 32.000 9.56 0.00 0.00 1.40
4766 5077 7.931578 AAACTCCGATCCAATTTGTACAATA 57.068 32.000 9.56 1.09 0.00 1.90
4767 5078 6.834168 AAACTCCGATCCAATTTGTACAAT 57.166 33.333 9.56 0.00 0.00 2.71
4768 5079 6.642707 AAAACTCCGATCCAATTTGTACAA 57.357 33.333 3.59 3.59 0.00 2.41
4769 5080 6.263392 TGAAAAACTCCGATCCAATTTGTACA 59.737 34.615 0.00 0.00 0.00 2.90
4770 5081 6.674066 TGAAAAACTCCGATCCAATTTGTAC 58.326 36.000 0.00 0.00 0.00 2.90
4771 5082 6.885952 TGAAAAACTCCGATCCAATTTGTA 57.114 33.333 0.00 0.00 0.00 2.41
4772 5083 5.782893 TGAAAAACTCCGATCCAATTTGT 57.217 34.783 0.00 0.00 0.00 2.83
4773 5084 5.982516 TGTTGAAAAACTCCGATCCAATTTG 59.017 36.000 0.00 0.00 0.00 2.32
4774 5085 6.155475 TGTTGAAAAACTCCGATCCAATTT 57.845 33.333 0.00 0.00 0.00 1.82
4775 5086 5.782893 TGTTGAAAAACTCCGATCCAATT 57.217 34.783 0.00 0.00 0.00 2.32
4776 5087 5.336690 CCATGTTGAAAAACTCCGATCCAAT 60.337 40.000 0.00 0.00 0.00 3.16
4777 5088 4.022416 CCATGTTGAAAAACTCCGATCCAA 60.022 41.667 0.00 0.00 0.00 3.53
4778 5089 3.505680 CCATGTTGAAAAACTCCGATCCA 59.494 43.478 0.00 0.00 0.00 3.41
4779 5090 3.673323 GCCATGTTGAAAAACTCCGATCC 60.673 47.826 0.00 0.00 0.00 3.36
4780 5091 3.057596 TGCCATGTTGAAAAACTCCGATC 60.058 43.478 0.00 0.00 0.00 3.69
4781 5092 2.890311 TGCCATGTTGAAAAACTCCGAT 59.110 40.909 0.00 0.00 0.00 4.18
4782 5093 2.034053 GTGCCATGTTGAAAAACTCCGA 59.966 45.455 0.00 0.00 0.00 4.55
4783 5094 2.034558 AGTGCCATGTTGAAAAACTCCG 59.965 45.455 0.00 0.00 0.00 4.63
4784 5095 3.733443 AGTGCCATGTTGAAAAACTCC 57.267 42.857 0.00 0.00 0.00 3.85
4785 5096 6.250089 CAAAAAGTGCCATGTTGAAAAACTC 58.750 36.000 0.00 0.00 0.00 3.01
4786 5097 6.180771 CAAAAAGTGCCATGTTGAAAAACT 57.819 33.333 0.00 0.00 0.00 2.66
4801 5112 2.979813 GCGTCATACTTGGCAAAAAGTG 59.020 45.455 0.00 0.00 40.58 3.16
4802 5113 2.884639 AGCGTCATACTTGGCAAAAAGT 59.115 40.909 0.00 0.00 42.89 2.66
4803 5114 3.236816 CAGCGTCATACTTGGCAAAAAG 58.763 45.455 0.00 0.00 0.00 2.27
4804 5115 2.606795 GCAGCGTCATACTTGGCAAAAA 60.607 45.455 0.00 0.00 0.00 1.94
4805 5116 1.068610 GCAGCGTCATACTTGGCAAAA 60.069 47.619 0.00 0.00 0.00 2.44
4806 5117 0.521291 GCAGCGTCATACTTGGCAAA 59.479 50.000 0.00 0.00 0.00 3.68
4807 5118 0.605050 TGCAGCGTCATACTTGGCAA 60.605 50.000 0.00 0.00 0.00 4.52
4808 5119 0.605050 TTGCAGCGTCATACTTGGCA 60.605 50.000 0.00 0.00 0.00 4.92
4809 5120 0.521291 TTTGCAGCGTCATACTTGGC 59.479 50.000 0.00 0.00 0.00 4.52
4810 5121 1.806542 AGTTTGCAGCGTCATACTTGG 59.193 47.619 0.00 0.00 0.00 3.61
4811 5122 3.482786 GAAGTTTGCAGCGTCATACTTG 58.517 45.455 16.75 0.00 38.00 3.16
4812 5123 2.157668 CGAAGTTTGCAGCGTCATACTT 59.842 45.455 13.54 13.54 39.67 2.24
4813 5124 1.726791 CGAAGTTTGCAGCGTCATACT 59.273 47.619 6.97 0.20 31.19 2.12
4814 5125 1.459592 ACGAAGTTTGCAGCGTCATAC 59.540 47.619 0.00 0.00 37.78 2.39
4815 5126 1.790755 ACGAAGTTTGCAGCGTCATA 58.209 45.000 0.00 0.00 37.78 2.15
4816 5127 2.616969 ACGAAGTTTGCAGCGTCAT 58.383 47.368 0.00 0.00 37.78 3.06
4817 5128 4.118480 ACGAAGTTTGCAGCGTCA 57.882 50.000 0.00 0.00 37.78 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.