Multiple sequence alignment - TraesCS1A01G117000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G117000 chr1A 100.000 2948 0 0 1 2948 124191296 124188349 0.000000e+00 5445
1 TraesCS1A01G117000 chr1A 81.510 384 29 17 1141 1524 124787261 124786920 8.050000e-71 278
2 TraesCS1A01G117000 chr1B 83.051 1652 165 64 886 2482 174784513 174782922 0.000000e+00 1393
3 TraesCS1A01G117000 chr1B 89.577 355 15 7 2511 2856 174768836 174768495 5.840000e-117 431
4 TraesCS1A01G117000 chr1B 79.612 412 31 26 1118 1524 175275885 175275522 2.270000e-61 246
5 TraesCS1A01G117000 chr1B 78.723 423 40 23 1108 1524 174763524 174763146 1.370000e-58 237
6 TraesCS1A01G117000 chr1B 93.023 86 4 2 2862 2946 174766883 174766799 1.110000e-24 124
7 TraesCS1A01G117000 chr1D 92.754 759 38 13 838 1591 114083937 114083191 0.000000e+00 1081
8 TraesCS1A01G117000 chr1D 87.446 924 39 32 2090 2948 114082350 114081439 0.000000e+00 992
9 TraesCS1A01G117000 chr1D 82.203 472 29 25 1629 2087 114083117 114082688 3.610000e-94 355
10 TraesCS1A01G117000 chr1D 78.957 556 90 24 71 613 403379966 403380507 1.300000e-93 353
11 TraesCS1A01G117000 chr1D 80.825 412 38 20 1118 1524 114313718 114313343 4.810000e-73 285
12 TraesCS1A01G117000 chr1D 79.669 423 39 25 1108 1524 114065179 114064798 8.100000e-66 261
13 TraesCS1A01G117000 chr6A 89.852 542 49 5 71 611 512869604 512869068 0.000000e+00 691
14 TraesCS1A01G117000 chr6A 89.319 543 53 3 71 613 170266340 170266877 0.000000e+00 676
15 TraesCS1A01G117000 chr6A 86.795 621 60 10 5 613 170192105 170192715 0.000000e+00 673
16 TraesCS1A01G117000 chr6A 89.134 543 55 3 71 613 206990473 206989935 0.000000e+00 673
17 TraesCS1A01G117000 chr6A 87.773 229 25 1 611 839 36495897 36496122 6.260000e-67 265
18 TraesCS1A01G117000 chr3A 89.522 544 53 3 71 613 246647031 246647571 0.000000e+00 686
19 TraesCS1A01G117000 chr3A 86.825 630 59 7 4 613 242141425 242140800 0.000000e+00 682
20 TraesCS1A01G117000 chr3A 86.032 630 63 7 4 613 242149872 242149248 0.000000e+00 652
21 TraesCS1A01G117000 chr2A 89.338 544 53 4 71 613 367273937 367274476 0.000000e+00 678
22 TraesCS1A01G117000 chr2A 86.278 634 63 5 1 613 189975039 189975669 0.000000e+00 667
23 TraesCS1A01G117000 chr2A 86.192 239 29 2 611 848 434580036 434580271 3.770000e-64 255
24 TraesCS1A01G117000 chr2A 76.087 552 85 33 82 613 77943145 77942621 8.160000e-61 244
25 TraesCS1A01G117000 chr7B 88.444 225 22 2 611 834 35138528 35138749 4.840000e-68 268
26 TraesCS1A01G117000 chr3B 87.554 233 26 1 611 843 191186624 191186853 1.740000e-67 267
27 TraesCS1A01G117000 chr5A 87.446 231 25 2 611 841 146528292 146528518 2.250000e-66 263
28 TraesCS1A01G117000 chr3D 87.179 234 26 2 611 843 39924221 39924451 2.250000e-66 263
29 TraesCS1A01G117000 chr3D 81.435 237 36 8 1279 1511 86237044 86237276 1.400000e-43 187
30 TraesCS1A01G117000 chr3D 86.713 143 14 5 1370 1511 86357854 86357992 1.410000e-33 154
31 TraesCS1A01G117000 chr6B 86.920 237 26 3 611 846 675396161 675395929 8.100000e-66 261
32 TraesCS1A01G117000 chr4D 86.864 236 28 1 611 846 101498869 101499101 8.100000e-66 261
33 TraesCS1A01G117000 chr2B 87.179 234 25 3 611 843 68259219 68259448 8.100000e-66 261
34 TraesCS1A01G117000 chr4B 85.593 118 14 2 1477 1591 666756068 666755951 1.440000e-23 121


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G117000 chr1A 124188349 124191296 2947 True 5445.000000 5445 100.000000 1 2948 1 chr1A.!!$R1 2947
1 TraesCS1A01G117000 chr1B 174782922 174784513 1591 True 1393.000000 1393 83.051000 886 2482 1 chr1B.!!$R1 1596
2 TraesCS1A01G117000 chr1B 174763146 174768836 5690 True 264.000000 431 87.107667 1108 2946 3 chr1B.!!$R3 1838
3 TraesCS1A01G117000 chr1D 114081439 114083937 2498 True 809.333333 1081 87.467667 838 2948 3 chr1D.!!$R3 2110
4 TraesCS1A01G117000 chr1D 403379966 403380507 541 False 353.000000 353 78.957000 71 613 1 chr1D.!!$F1 542
5 TraesCS1A01G117000 chr6A 512869068 512869604 536 True 691.000000 691 89.852000 71 611 1 chr6A.!!$R2 540
6 TraesCS1A01G117000 chr6A 170266340 170266877 537 False 676.000000 676 89.319000 71 613 1 chr6A.!!$F3 542
7 TraesCS1A01G117000 chr6A 170192105 170192715 610 False 673.000000 673 86.795000 5 613 1 chr6A.!!$F2 608
8 TraesCS1A01G117000 chr6A 206989935 206990473 538 True 673.000000 673 89.134000 71 613 1 chr6A.!!$R1 542
9 TraesCS1A01G117000 chr3A 246647031 246647571 540 False 686.000000 686 89.522000 71 613 1 chr3A.!!$F1 542
10 TraesCS1A01G117000 chr3A 242140800 242141425 625 True 682.000000 682 86.825000 4 613 1 chr3A.!!$R1 609
11 TraesCS1A01G117000 chr3A 242149248 242149872 624 True 652.000000 652 86.032000 4 613 1 chr3A.!!$R2 609
12 TraesCS1A01G117000 chr2A 367273937 367274476 539 False 678.000000 678 89.338000 71 613 1 chr2A.!!$F2 542
13 TraesCS1A01G117000 chr2A 189975039 189975669 630 False 667.000000 667 86.278000 1 613 1 chr2A.!!$F1 612
14 TraesCS1A01G117000 chr2A 77942621 77943145 524 True 244.000000 244 76.087000 82 613 1 chr2A.!!$R1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
637 682 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2436 7103 0.179097 CTTCAGCCGAGCCTTCTACC 60.179 60.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.378427 GCTCACAGTGTCCTTGTTTTCTT 59.622 43.478 0.00 0.00 0.00 2.52
91 111 1.557443 GGTGCAACGAGACCAAGACG 61.557 60.000 0.00 0.00 38.12 4.18
104 124 2.650116 AAGACGAGCAGGACGGCAT 61.650 57.895 0.00 0.00 41.61 4.40
134 154 4.003788 CGTGGAGCCCAAGACGGT 62.004 66.667 1.83 0.00 35.05 4.83
143 163 1.954146 CCAAGACGGTGTCACCACG 60.954 63.158 21.91 11.07 42.80 4.94
153 173 0.468226 TGTCACCACGAGAGCCTTTT 59.532 50.000 0.00 0.00 0.00 2.27
253 278 4.223923 CCGCTCAATATTTAGGGAGAGGAT 59.776 45.833 14.42 0.00 46.35 3.24
336 375 3.072915 TCCAATCCATTCACACACTCACT 59.927 43.478 0.00 0.00 0.00 3.41
390 430 3.256704 TCCTCCCCTTGTACTGTTCATT 58.743 45.455 0.00 0.00 0.00 2.57
399 439 4.150897 TGTACTGTTCATTATCAGCCCC 57.849 45.455 0.00 0.00 35.37 5.80
400 440 2.736670 ACTGTTCATTATCAGCCCCC 57.263 50.000 0.00 0.00 35.37 5.40
424 465 1.570501 AGGCAATCCACCACACCATAT 59.429 47.619 0.00 0.00 33.74 1.78
492 534 4.574892 TCTTGTGTCTCTTGTGTTGTGAA 58.425 39.130 0.00 0.00 0.00 3.18
560 605 1.107114 GTGAGGGAGAGATCTTCGCA 58.893 55.000 17.70 6.67 0.00 5.10
585 630 4.634199 CACCCTAGTGTTCGAACCTTAAA 58.366 43.478 24.78 3.37 39.30 1.52
586 631 5.058490 CACCCTAGTGTTCGAACCTTAAAA 58.942 41.667 24.78 2.58 39.30 1.52
614 659 1.022982 GGAACCCGAAATCCGACACC 61.023 60.000 0.00 0.00 41.76 4.16
615 660 1.002990 AACCCGAAATCCGACACCC 60.003 57.895 0.00 0.00 41.76 4.61
616 661 1.486145 AACCCGAAATCCGACACCCT 61.486 55.000 0.00 0.00 41.76 4.34
617 662 0.615544 ACCCGAAATCCGACACCCTA 60.616 55.000 0.00 0.00 41.76 3.53
618 663 0.756903 CCCGAAATCCGACACCCTAT 59.243 55.000 0.00 0.00 41.76 2.57
619 664 1.270147 CCCGAAATCCGACACCCTATC 60.270 57.143 0.00 0.00 41.76 2.08
620 665 1.270147 CCGAAATCCGACACCCTATCC 60.270 57.143 0.00 0.00 41.76 2.59
621 666 1.270147 CGAAATCCGACACCCTATCCC 60.270 57.143 0.00 0.00 41.76 3.85
622 667 2.047830 GAAATCCGACACCCTATCCCT 58.952 52.381 0.00 0.00 0.00 4.20
623 668 3.236896 GAAATCCGACACCCTATCCCTA 58.763 50.000 0.00 0.00 0.00 3.53
624 669 3.562108 AATCCGACACCCTATCCCTAT 57.438 47.619 0.00 0.00 0.00 2.57
625 670 2.304221 TCCGACACCCTATCCCTATG 57.696 55.000 0.00 0.00 0.00 2.23
626 671 1.784593 TCCGACACCCTATCCCTATGA 59.215 52.381 0.00 0.00 0.00 2.15
627 672 2.171840 CCGACACCCTATCCCTATGAG 58.828 57.143 0.00 0.00 0.00 2.90
629 674 2.609747 GACACCCTATCCCTATGAGCA 58.390 52.381 0.00 0.00 0.00 4.26
630 675 2.300437 GACACCCTATCCCTATGAGCAC 59.700 54.545 0.00 0.00 0.00 4.40
632 677 1.509961 ACCCTATCCCTATGAGCACCT 59.490 52.381 0.00 0.00 0.00 4.00
633 678 2.183679 CCCTATCCCTATGAGCACCTC 58.816 57.143 0.00 0.00 0.00 3.85
634 679 2.183679 CCTATCCCTATGAGCACCTCC 58.816 57.143 0.00 0.00 0.00 4.30
636 681 0.188587 ATCCCTATGAGCACCTCCGA 59.811 55.000 0.00 0.00 0.00 4.55
637 682 0.032515 TCCCTATGAGCACCTCCGAA 60.033 55.000 0.00 0.00 0.00 4.30
639 684 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
640 685 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
642 687 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
643 688 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
644 689 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
645 690 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
647 692 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
649 694 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
653 698 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
654 699 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
655 700 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
656 701 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
657 702 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
659 704 2.105477 AGACTGAGCCGGCATATCATTT 59.895 45.455 31.54 13.22 0.00 2.32
660 705 2.880890 GACTGAGCCGGCATATCATTTT 59.119 45.455 31.54 10.68 0.00 1.82
661 706 2.620115 ACTGAGCCGGCATATCATTTTG 59.380 45.455 31.54 13.72 0.00 2.44
662 707 2.880268 CTGAGCCGGCATATCATTTTGA 59.120 45.455 31.54 0.00 0.00 2.69
664 709 3.698539 TGAGCCGGCATATCATTTTGAAA 59.301 39.130 31.54 0.00 0.00 2.69
665 710 4.341806 TGAGCCGGCATATCATTTTGAAAT 59.658 37.500 31.54 0.06 0.00 2.17
666 711 5.163426 TGAGCCGGCATATCATTTTGAAATT 60.163 36.000 31.54 0.00 0.00 1.82
667 712 5.673514 AGCCGGCATATCATTTTGAAATTT 58.326 33.333 31.54 0.00 0.00 1.82
668 713 6.815089 AGCCGGCATATCATTTTGAAATTTA 58.185 32.000 31.54 0.00 0.00 1.40
670 715 6.345723 GCCGGCATATCATTTTGAAATTTACG 60.346 38.462 24.80 0.00 0.00 3.18
672 717 7.433719 CCGGCATATCATTTTGAAATTTACGAA 59.566 33.333 0.00 0.00 0.00 3.85
673 718 8.471457 CGGCATATCATTTTGAAATTTACGAAG 58.529 33.333 0.00 0.00 0.00 3.79
678 723 8.742554 ATCATTTTGAAATTTACGAAGTCACC 57.257 30.769 0.00 0.00 43.93 4.02
679 724 6.853872 TCATTTTGAAATTTACGAAGTCACCG 59.146 34.615 0.00 0.00 43.93 4.94
680 725 5.738118 TTTGAAATTTACGAAGTCACCGT 57.262 34.783 0.00 0.00 43.93 4.83
681 726 6.841443 TTTGAAATTTACGAAGTCACCGTA 57.159 33.333 0.00 0.00 43.93 4.02
682 727 6.456447 TTGAAATTTACGAAGTCACCGTAG 57.544 37.500 0.00 0.00 43.93 3.51
694 739 2.654877 CCGTAGGCACCTTGTCGT 59.345 61.111 0.00 0.00 46.14 4.34
695 740 1.445582 CCGTAGGCACCTTGTCGTC 60.446 63.158 0.00 0.00 46.14 4.20
696 741 1.800315 CGTAGGCACCTTGTCGTCG 60.800 63.158 0.00 0.00 0.00 5.12
697 742 1.582968 GTAGGCACCTTGTCGTCGA 59.417 57.895 0.00 0.00 0.00 4.20
699 744 2.191354 TAGGCACCTTGTCGTCGACG 62.191 60.000 31.30 31.30 41.45 5.12
701 746 2.430244 CACCTTGTCGTCGACGGG 60.430 66.667 35.05 28.87 40.29 5.28
703 748 2.195567 ACCTTGTCGTCGACGGGAA 61.196 57.895 35.05 25.26 40.29 3.97
718 763 3.516578 GGAACGTCTTCTCCCACTG 57.483 57.895 0.00 0.00 0.00 3.66
719 764 0.966920 GGAACGTCTTCTCCCACTGA 59.033 55.000 0.00 0.00 0.00 3.41
721 766 2.028020 GGAACGTCTTCTCCCACTGAAT 60.028 50.000 0.00 0.00 0.00 2.57
722 767 2.751166 ACGTCTTCTCCCACTGAATG 57.249 50.000 0.00 0.00 0.00 2.67
723 768 2.248248 ACGTCTTCTCCCACTGAATGA 58.752 47.619 0.00 0.00 0.00 2.57
724 769 2.232452 ACGTCTTCTCCCACTGAATGAG 59.768 50.000 0.00 0.00 0.00 2.90
725 770 2.493675 CGTCTTCTCCCACTGAATGAGA 59.506 50.000 0.00 0.00 33.50 3.27
726 771 3.056536 CGTCTTCTCCCACTGAATGAGAA 60.057 47.826 0.00 0.00 41.50 2.87
727 772 4.382470 CGTCTTCTCCCACTGAATGAGAAT 60.382 45.833 0.00 0.00 42.46 2.40
729 774 3.808466 TCTCCCACTGAATGAGAATCG 57.192 47.619 0.00 0.00 38.61 3.34
730 775 3.099905 TCTCCCACTGAATGAGAATCGT 58.900 45.455 0.00 0.00 38.61 3.73
732 777 2.159240 TCCCACTGAATGAGAATCGTCG 60.159 50.000 0.00 0.00 38.61 5.12
733 778 2.159240 CCCACTGAATGAGAATCGTCGA 60.159 50.000 0.00 0.00 38.61 4.20
734 779 3.511699 CCACTGAATGAGAATCGTCGAA 58.488 45.455 0.00 0.00 38.61 3.71
736 781 4.388773 CCACTGAATGAGAATCGTCGAAAA 59.611 41.667 0.00 0.00 38.61 2.29
737 782 5.063944 CCACTGAATGAGAATCGTCGAAAAT 59.936 40.000 0.00 0.00 38.61 1.82
738 783 6.402550 CCACTGAATGAGAATCGTCGAAAATT 60.403 38.462 0.00 0.00 38.61 1.82
740 785 6.591834 ACTGAATGAGAATCGTCGAAAATTCT 59.408 34.615 18.54 18.54 43.23 2.40
741 786 7.759886 ACTGAATGAGAATCGTCGAAAATTCTA 59.240 33.333 18.52 10.71 41.20 2.10
742 787 8.474006 TGAATGAGAATCGTCGAAAATTCTAA 57.526 30.769 18.52 14.05 41.20 2.10
743 788 8.931775 TGAATGAGAATCGTCGAAAATTCTAAA 58.068 29.630 18.52 12.72 41.20 1.85
768 813 9.585099 AAATAAATTCAAGAATAAATGCGAGCA 57.415 25.926 0.00 0.00 0.00 4.26
769 814 6.875926 AAATTCAAGAATAAATGCGAGCAC 57.124 33.333 0.00 0.00 0.00 4.40
770 815 4.355543 TTCAAGAATAAATGCGAGCACC 57.644 40.909 0.00 0.00 0.00 5.01
771 816 3.342719 TCAAGAATAAATGCGAGCACCA 58.657 40.909 0.00 0.00 0.00 4.17
773 818 4.100529 CAAGAATAAATGCGAGCACCAAG 58.899 43.478 0.00 0.00 0.00 3.61
774 819 3.609853 AGAATAAATGCGAGCACCAAGA 58.390 40.909 0.00 0.00 0.00 3.02
775 820 4.202441 AGAATAAATGCGAGCACCAAGAT 58.798 39.130 0.00 0.00 0.00 2.40
776 821 4.641989 AGAATAAATGCGAGCACCAAGATT 59.358 37.500 0.00 0.00 0.00 2.40
777 822 4.989279 ATAAATGCGAGCACCAAGATTT 57.011 36.364 0.00 0.00 0.00 2.17
778 823 6.318648 AGAATAAATGCGAGCACCAAGATTTA 59.681 34.615 0.00 1.06 0.00 1.40
779 824 4.782019 AAATGCGAGCACCAAGATTTAA 57.218 36.364 0.00 0.00 0.00 1.52
780 825 4.782019 AATGCGAGCACCAAGATTTAAA 57.218 36.364 0.00 0.00 0.00 1.52
781 826 3.552604 TGCGAGCACCAAGATTTAAAC 57.447 42.857 0.00 0.00 0.00 2.01
782 827 3.146066 TGCGAGCACCAAGATTTAAACT 58.854 40.909 0.00 0.00 0.00 2.66
784 829 3.437049 GCGAGCACCAAGATTTAAACTCT 59.563 43.478 0.00 0.00 0.00 3.24
786 831 4.690748 CGAGCACCAAGATTTAAACTCTCA 59.309 41.667 0.00 0.00 0.00 3.27
787 832 5.352569 CGAGCACCAAGATTTAAACTCTCAT 59.647 40.000 0.00 0.00 0.00 2.90
788 833 6.506500 AGCACCAAGATTTAAACTCTCATG 57.493 37.500 0.00 0.00 0.00 3.07
789 834 5.416952 AGCACCAAGATTTAAACTCTCATGG 59.583 40.000 9.09 9.09 30.27 3.66
791 836 6.096001 GCACCAAGATTTAAACTCTCATGGAT 59.904 38.462 15.13 1.79 29.17 3.41
792 837 7.363268 GCACCAAGATTTAAACTCTCATGGATT 60.363 37.037 15.13 0.00 29.17 3.01
793 838 9.177608 CACCAAGATTTAAACTCTCATGGATTA 57.822 33.333 15.13 0.00 29.17 1.75
794 839 9.401058 ACCAAGATTTAAACTCTCATGGATTAG 57.599 33.333 15.13 0.00 29.17 1.73
795 840 8.844244 CCAAGATTTAAACTCTCATGGATTAGG 58.156 37.037 5.89 0.00 0.00 2.69
797 842 8.337118 AGATTTAAACTCTCATGGATTAGGGA 57.663 34.615 0.00 0.00 0.00 4.20
798 843 8.953665 AGATTTAAACTCTCATGGATTAGGGAT 58.046 33.333 0.00 0.00 0.00 3.85
802 847 7.451731 AAACTCTCATGGATTAGGGATAACA 57.548 36.000 0.00 0.00 0.00 2.41
804 849 6.385443 ACTCTCATGGATTAGGGATAACAGA 58.615 40.000 0.00 0.00 0.00 3.41
805 850 6.496565 ACTCTCATGGATTAGGGATAACAGAG 59.503 42.308 0.00 0.00 0.00 3.35
806 851 6.385443 TCTCATGGATTAGGGATAACAGAGT 58.615 40.000 0.00 0.00 0.00 3.24
808 853 6.385443 TCATGGATTAGGGATAACAGAGTCT 58.615 40.000 0.00 0.00 0.00 3.24
809 854 6.495181 TCATGGATTAGGGATAACAGAGTCTC 59.505 42.308 0.00 0.00 0.00 3.36
810 855 6.031964 TGGATTAGGGATAACAGAGTCTCT 57.968 41.667 0.00 0.00 0.00 3.10
811 856 6.071984 TGGATTAGGGATAACAGAGTCTCTC 58.928 44.000 0.00 0.00 0.00 3.20
812 857 6.126038 TGGATTAGGGATAACAGAGTCTCTCT 60.126 42.308 0.00 0.00 42.11 3.10
814 859 7.945664 GGATTAGGGATAACAGAGTCTCTCTAA 59.054 40.741 0.00 3.68 38.99 2.10
815 860 9.528489 GATTAGGGATAACAGAGTCTCTCTAAT 57.472 37.037 13.56 13.56 38.99 1.73
818 863 8.700439 AGGGATAACAGAGTCTCTCTAATAAC 57.300 38.462 0.00 0.00 38.99 1.89
819 864 7.726738 AGGGATAACAGAGTCTCTCTAATAACC 59.273 40.741 0.00 0.00 38.99 2.85
820 865 7.506261 GGGATAACAGAGTCTCTCTAATAACCA 59.494 40.741 0.00 0.00 38.99 3.67
821 866 9.084533 GGATAACAGAGTCTCTCTAATAACCAT 57.915 37.037 0.00 0.00 38.99 3.55
823 868 6.969993 ACAGAGTCTCTCTAATAACCATCC 57.030 41.667 0.00 0.00 38.99 3.51
824 869 6.436027 ACAGAGTCTCTCTAATAACCATCCA 58.564 40.000 0.00 0.00 38.99 3.41
825 870 6.897966 ACAGAGTCTCTCTAATAACCATCCAA 59.102 38.462 0.00 0.00 38.99 3.53
826 871 7.147811 ACAGAGTCTCTCTAATAACCATCCAAC 60.148 40.741 0.00 0.00 38.99 3.77
828 873 5.964477 AGTCTCTCTAATAACCATCCAACCA 59.036 40.000 0.00 0.00 0.00 3.67
829 874 6.049790 GTCTCTCTAATAACCATCCAACCAC 58.950 44.000 0.00 0.00 0.00 4.16
832 877 5.487488 TCTCTAATAACCATCCAACCACAGT 59.513 40.000 0.00 0.00 0.00 3.55
833 878 6.012858 TCTCTAATAACCATCCAACCACAGTT 60.013 38.462 0.00 0.00 36.33 3.16
837 882 3.243359 ACCATCCAACCACAGTTTGAT 57.757 42.857 0.00 0.00 38.54 2.57
838 883 3.575805 ACCATCCAACCACAGTTTGATT 58.424 40.909 0.00 0.00 36.49 2.57
839 884 3.966665 ACCATCCAACCACAGTTTGATTT 59.033 39.130 0.00 0.00 36.49 2.17
840 885 4.202243 ACCATCCAACCACAGTTTGATTTG 60.202 41.667 0.00 0.00 36.49 2.32
842 887 3.030291 TCCAACCACAGTTTGATTTGCT 58.970 40.909 0.00 0.00 32.45 3.91
844 889 3.044986 CAACCACAGTTTGATTTGCTCG 58.955 45.455 0.00 0.00 32.45 5.03
847 892 3.498397 ACCACAGTTTGATTTGCTCGTAG 59.502 43.478 0.00 0.00 0.00 3.51
864 909 2.618053 GTAGTGTATTTGCTGCCGTCT 58.382 47.619 0.00 0.00 0.00 4.18
914 959 1.128136 CTACTCGATCACACGTCACGT 59.872 52.381 0.00 0.00 42.36 4.49
978 1023 4.100189 CGTTCCTATCCACTCTTCATCCTT 59.900 45.833 0.00 0.00 0.00 3.36
987 1032 3.009473 CACTCTTCATCCTTTTCCCCTGA 59.991 47.826 0.00 0.00 0.00 3.86
990 1035 0.999712 TCATCCTTTTCCCCTGACCC 59.000 55.000 0.00 0.00 0.00 4.46
992 1037 0.845102 ATCCTTTTCCCCTGACCCGT 60.845 55.000 0.00 0.00 0.00 5.28
993 1038 1.063654 TCCTTTTCCCCTGACCCGTT 61.064 55.000 0.00 0.00 0.00 4.44
994 1039 0.694196 CCTTTTCCCCTGACCCGTTA 59.306 55.000 0.00 0.00 0.00 3.18
1008 1055 6.146673 CCTGACCCGTTAATCCGTTATAAATC 59.853 42.308 0.00 0.00 0.00 2.17
1051 1101 1.198408 CTCGCAAGCTCAAGCATTCAA 59.802 47.619 4.59 0.00 45.16 2.69
1054 1104 1.725164 GCAAGCTCAAGCATTCAAAGC 59.275 47.619 4.59 0.00 45.16 3.51
1086 1139 3.432749 CCATCATCTCTCACCAAACCGAT 60.433 47.826 0.00 0.00 0.00 4.18
1101 1154 0.679640 CCGATAGCAAAGCAACCCCA 60.680 55.000 0.00 0.00 0.00 4.96
1104 1157 2.290641 CGATAGCAAAGCAACCCCATAC 59.709 50.000 0.00 0.00 0.00 2.39
1105 1158 2.889170 TAGCAAAGCAACCCCATACA 57.111 45.000 0.00 0.00 0.00 2.29
1111 1164 4.202050 GCAAAGCAACCCCATACATAGAAG 60.202 45.833 0.00 0.00 0.00 2.85
1117 5323 5.680619 CAACCCCATACATAGAAGCTTACA 58.319 41.667 0.00 0.00 0.00 2.41
1310 5520 3.699894 CCACTGCTCGGCTGGTCT 61.700 66.667 0.00 0.00 0.00 3.85
1369 5579 3.730761 GATGGCGATGGCGATGGC 61.731 66.667 7.17 7.17 37.76 4.40
1553 5763 4.643387 ACAGACCGCCAGCCAACC 62.643 66.667 0.00 0.00 0.00 3.77
1565 5775 2.125673 CCAACCCGCCGACACTAG 60.126 66.667 0.00 0.00 0.00 2.57
1574 5784 0.038159 GCCGACACTAGCAGACAAGT 60.038 55.000 0.00 0.00 0.00 3.16
1584 5794 1.202855 AGCAGACAAGTTGATGTGCCT 60.203 47.619 10.54 3.21 32.57 4.75
1588 5798 1.949525 GACAAGTTGATGTGCCTGTGT 59.050 47.619 10.54 0.00 32.57 3.72
1591 5801 1.597742 AGTTGATGTGCCTGTGTGTC 58.402 50.000 0.00 0.00 0.00 3.67
1592 5802 0.593128 GTTGATGTGCCTGTGTGTCC 59.407 55.000 0.00 0.00 0.00 4.02
1593 5803 0.473755 TTGATGTGCCTGTGTGTCCT 59.526 50.000 0.00 0.00 0.00 3.85
1594 5804 0.473755 TGATGTGCCTGTGTGTCCTT 59.526 50.000 0.00 0.00 0.00 3.36
1595 5805 1.133823 TGATGTGCCTGTGTGTCCTTT 60.134 47.619 0.00 0.00 0.00 3.11
1596 5806 1.537202 GATGTGCCTGTGTGTCCTTTC 59.463 52.381 0.00 0.00 0.00 2.62
1597 5807 0.546122 TGTGCCTGTGTGTCCTTTCT 59.454 50.000 0.00 0.00 0.00 2.52
1599 5809 0.819259 TGCCTGTGTGTCCTTTCTGC 60.819 55.000 0.00 0.00 0.00 4.26
1601 5811 1.270839 GCCTGTGTGTCCTTTCTGCTA 60.271 52.381 0.00 0.00 0.00 3.49
1603 5813 3.369471 GCCTGTGTGTCCTTTCTGCTATA 60.369 47.826 0.00 0.00 0.00 1.31
1604 5814 4.832248 CCTGTGTGTCCTTTCTGCTATAA 58.168 43.478 0.00 0.00 0.00 0.98
1605 5815 5.431765 CCTGTGTGTCCTTTCTGCTATAAT 58.568 41.667 0.00 0.00 0.00 1.28
1606 5816 5.882557 CCTGTGTGTCCTTTCTGCTATAATT 59.117 40.000 0.00 0.00 0.00 1.40
1607 5817 6.183360 CCTGTGTGTCCTTTCTGCTATAATTG 60.183 42.308 0.00 0.00 0.00 2.32
1608 5818 6.237901 TGTGTGTCCTTTCTGCTATAATTGT 58.762 36.000 0.00 0.00 0.00 2.71
1610 5820 7.023575 GTGTGTCCTTTCTGCTATAATTGTTG 58.976 38.462 0.00 0.00 0.00 3.33
1612 5822 7.230510 TGTGTCCTTTCTGCTATAATTGTTGTT 59.769 33.333 0.00 0.00 0.00 2.83
1614 5824 7.230510 TGTCCTTTCTGCTATAATTGTTGTTGT 59.769 33.333 0.00 0.00 0.00 3.32
1615 5825 7.750903 GTCCTTTCTGCTATAATTGTTGTTGTC 59.249 37.037 0.00 0.00 0.00 3.18
1616 5826 7.446931 TCCTTTCTGCTATAATTGTTGTTGTCA 59.553 33.333 0.00 0.00 0.00 3.58
1624 5871 9.619316 GCTATAATTGTTGTTGTCATGTGTTAA 57.381 29.630 0.00 0.00 0.00 2.01
1681 5928 4.519906 TTTAGGGTTGATCCATTCCCTC 57.480 45.455 14.50 0.00 46.22 4.30
1723 5970 1.080772 GCCGGCCTGCTTGTTTTAC 60.081 57.895 18.11 0.00 0.00 2.01
1724 5971 1.584495 CCGGCCTGCTTGTTTTACC 59.416 57.895 0.00 0.00 0.00 2.85
1758 6005 2.689471 TCAATCTGATTCCCCGCATTTG 59.311 45.455 0.00 0.00 0.00 2.32
1759 6006 2.428171 CAATCTGATTCCCCGCATTTGT 59.572 45.455 0.00 0.00 0.00 2.83
1760 6007 3.576078 ATCTGATTCCCCGCATTTGTA 57.424 42.857 0.00 0.00 0.00 2.41
1769 6016 5.100344 TCCCCGCATTTGTAGTAACATTA 57.900 39.130 0.00 0.00 34.97 1.90
1776 6023 6.706270 CGCATTTGTAGTAACATTAGGGATCT 59.294 38.462 0.00 0.00 34.97 2.75
1789 6036 2.648059 AGGGATCTGCAGTTAACATGC 58.352 47.619 14.67 17.75 44.11 4.06
1819 6066 3.044235 TCTGTGATACTTGTGCTGGTG 57.956 47.619 0.00 0.00 0.00 4.17
1823 6070 1.339055 TGATACTTGTGCTGGTGGCTC 60.339 52.381 0.00 0.00 42.39 4.70
1830 6111 1.109323 GTGCTGGTGGCTCTTTTGGT 61.109 55.000 0.00 0.00 42.39 3.67
1861 6142 6.051717 CACCGATTAATTCTGGATCTGAACT 58.948 40.000 8.74 0.00 0.00 3.01
1862 6143 6.201806 CACCGATTAATTCTGGATCTGAACTC 59.798 42.308 8.74 0.00 0.00 3.01
1865 6146 7.596995 CCGATTAATTCTGGATCTGAACTCTAC 59.403 40.741 0.00 0.00 0.00 2.59
1867 6148 4.927978 ATTCTGGATCTGAACTCTACGG 57.072 45.455 0.00 0.00 0.00 4.02
1868 6149 3.367646 TCTGGATCTGAACTCTACGGT 57.632 47.619 0.00 0.00 0.00 4.83
1869 6150 3.017442 TCTGGATCTGAACTCTACGGTG 58.983 50.000 0.00 0.00 0.00 4.94
1870 6151 1.476891 TGGATCTGAACTCTACGGTGC 59.523 52.381 0.00 0.00 0.00 5.01
1871 6152 1.202428 GGATCTGAACTCTACGGTGCC 60.202 57.143 0.00 0.00 0.00 5.01
1906 6187 7.872993 TGTTGTCTTCTCCTCAACAAACTATAG 59.127 37.037 7.36 0.00 45.05 1.31
1907 6188 6.398918 TGTCTTCTCCTCAACAAACTATAGC 58.601 40.000 0.00 0.00 0.00 2.97
1909 6190 6.874134 GTCTTCTCCTCAACAAACTATAGCAA 59.126 38.462 0.00 0.00 0.00 3.91
1910 6191 7.064016 GTCTTCTCCTCAACAAACTATAGCAAG 59.936 40.741 0.00 0.00 0.00 4.01
1921 6204 4.130286 ACTATAGCAAGGCTTCTGTGTC 57.870 45.455 0.00 0.00 40.44 3.67
1927 6210 2.035066 GCAAGGCTTCTGTGTCATTTGT 59.965 45.455 0.00 0.00 0.00 2.83
1929 6212 3.213206 AGGCTTCTGTGTCATTTGTCA 57.787 42.857 0.00 0.00 0.00 3.58
1932 6215 4.940046 AGGCTTCTGTGTCATTTGTCATAG 59.060 41.667 0.00 0.00 0.00 2.23
2001 6288 3.071874 CAGGATCTTTACCAACCTGCA 57.928 47.619 0.00 0.00 40.90 4.41
2002 6289 3.624777 CAGGATCTTTACCAACCTGCAT 58.375 45.455 0.00 0.00 40.90 3.96
2003 6290 4.780815 CAGGATCTTTACCAACCTGCATA 58.219 43.478 0.00 0.00 40.90 3.14
2010 6297 1.247567 ACCAACCTGCATACACAAGC 58.752 50.000 0.00 0.00 0.00 4.01
2017 6304 2.479049 CCTGCATACACAAGCTGATTGC 60.479 50.000 5.42 0.00 43.15 3.56
2081 6385 9.031360 CCTCGCTTGCGTTACATTATATTATAT 57.969 33.333 14.70 0.00 0.00 0.86
2137 6783 3.245797 CCATGATACGCAACTATCTCCG 58.754 50.000 0.00 0.00 0.00 4.63
2172 6819 2.169832 TGCACAAAGTACTCTGCCTC 57.830 50.000 14.39 0.00 0.00 4.70
2206 6861 2.879646 CAGTTGTTTGCCCGGTAGTAAA 59.120 45.455 0.00 0.00 0.00 2.01
2208 6863 3.316029 AGTTGTTTGCCCGGTAGTAAAAC 59.684 43.478 0.00 4.37 0.00 2.43
2209 6864 1.872313 TGTTTGCCCGGTAGTAAAACG 59.128 47.619 0.00 0.00 34.27 3.60
2210 6865 1.872952 GTTTGCCCGGTAGTAAAACGT 59.127 47.619 0.00 0.00 0.00 3.99
2211 6866 1.510776 TTGCCCGGTAGTAAAACGTG 58.489 50.000 0.00 0.00 0.00 4.49
2212 6867 0.392336 TGCCCGGTAGTAAAACGTGT 59.608 50.000 0.00 0.00 0.00 4.49
2213 6868 1.615883 TGCCCGGTAGTAAAACGTGTA 59.384 47.619 0.00 0.00 0.00 2.90
2214 6869 2.262211 GCCCGGTAGTAAAACGTGTAG 58.738 52.381 0.00 0.00 0.00 2.74
2215 6870 2.352715 GCCCGGTAGTAAAACGTGTAGT 60.353 50.000 0.00 0.00 0.00 2.73
2216 6871 3.119637 GCCCGGTAGTAAAACGTGTAGTA 60.120 47.826 0.00 0.00 0.00 1.82
2217 6872 4.662145 CCCGGTAGTAAAACGTGTAGTAG 58.338 47.826 0.00 0.00 0.00 2.57
2218 6873 4.156008 CCCGGTAGTAAAACGTGTAGTAGT 59.844 45.833 0.00 0.00 0.00 2.73
2219 6874 5.088739 CCGGTAGTAAAACGTGTAGTAGTG 58.911 45.833 0.00 0.00 0.00 2.74
2310 6977 0.108709 TTCGCAAATGGCATTGGCTC 60.109 50.000 31.01 9.61 45.17 4.70
2312 6979 0.179094 CGCAAATGGCATTGGCTCAT 60.179 50.000 31.01 6.04 45.17 2.90
2334 7001 1.823470 GTGGGCTGCGGCATATCAA 60.823 57.895 21.31 0.00 40.87 2.57
2414 7081 1.197264 GTGCGCCGGTGTTTTACATTA 59.803 47.619 17.91 0.00 0.00 1.90
2461 7128 1.267121 AGGCTCGGCTGAAGAACTTA 58.733 50.000 0.00 0.00 0.00 2.24
2469 7136 4.020573 TCGGCTGAAGAACTTAGGAAATGA 60.021 41.667 0.00 0.00 0.00 2.57
2525 7192 1.269998 GTAGGTCGATTGGAGATCGGG 59.730 57.143 8.36 0.00 41.45 5.14
2549 7216 3.760684 GGAGGGTTCGACTAACAGAGTAA 59.239 47.826 0.00 0.00 39.06 2.24
2554 7221 4.858140 GGTTCGACTAACAGAGTAAAGCTC 59.142 45.833 0.00 0.00 39.06 4.09
2593 7290 1.597663 AGCGCAACTGTAACTTGTGAC 59.402 47.619 11.47 0.00 31.90 3.67
2607 7304 0.757561 TGTGACTTCTGGGTCGTCCA 60.758 55.000 0.04 0.51 44.79 4.02
2608 7305 0.319641 GTGACTTCTGGGTCGTCCAC 60.320 60.000 0.04 0.00 41.46 4.02
2660 7357 5.073311 TGGCTAACTGATGAAGTGTAGAC 57.927 43.478 0.00 0.00 39.81 2.59
2771 7484 0.400975 ATCTCCTGGCAGCATCCATC 59.599 55.000 9.56 0.00 35.22 3.51
2812 7525 8.717821 GCTTTAACTATGTAATCTTCACACACA 58.282 33.333 0.00 0.00 0.00 3.72
2818 7531 8.097038 ACTATGTAATCTTCACACACACAATCT 58.903 33.333 0.00 0.00 0.00 2.40
2824 7537 3.902261 TCACACACACAATCTTCATGC 57.098 42.857 0.00 0.00 0.00 4.06
2860 7573 2.029290 GTCAGTACTCGCCTTCTGGAAA 60.029 50.000 0.00 0.00 34.57 3.13
2869 7582 2.226674 CGCCTTCTGGAAAGAAAGAACC 59.773 50.000 0.00 0.00 34.57 3.62
2910 7624 0.980754 ACCACGCACCTCCCATATCA 60.981 55.000 0.00 0.00 0.00 2.15
2937 7651 7.050377 TCTCTGTATGATTTTCTCATGAACCC 58.950 38.462 0.00 0.00 44.48 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 0.314898 CGGTACTCTTCGTCTACGCG 60.315 60.000 3.53 3.53 39.60 6.01
49 50 1.661341 GCCTCGGTACTCTTCGTCTA 58.339 55.000 0.00 0.00 0.00 2.59
134 154 0.468226 AAAAGGCTCTCGTGGTGACA 59.532 50.000 0.00 0.00 38.70 3.58
225 250 5.130477 TCTCCCTAAATATTGAGCGGAAAGT 59.870 40.000 9.92 0.00 0.00 2.66
253 278 5.930209 AATCCTATTTATTGAGGCCCTGA 57.070 39.130 0.00 0.00 32.40 3.86
336 375 2.438021 AGGTGAGGTGTTCTTGTGCTAA 59.562 45.455 0.00 0.00 0.00 3.09
371 411 5.989477 TGATAATGAACAGTACAAGGGGAG 58.011 41.667 0.00 0.00 0.00 4.30
399 439 1.379044 GTGGTGGATTGCCTCTGGG 60.379 63.158 0.00 0.00 34.31 4.45
400 440 0.962356 GTGTGGTGGATTGCCTCTGG 60.962 60.000 0.00 0.00 34.31 3.86
492 534 3.055819 TCTCAAAGGCTAGCTCGACAAAT 60.056 43.478 15.72 0.00 0.00 2.32
614 659 2.183679 GGAGGTGCTCATAGGGATAGG 58.816 57.143 0.00 0.00 31.08 2.57
615 660 1.821753 CGGAGGTGCTCATAGGGATAG 59.178 57.143 0.00 0.00 31.08 2.08
616 661 1.427753 TCGGAGGTGCTCATAGGGATA 59.572 52.381 0.00 0.00 31.08 2.59
617 662 0.188587 TCGGAGGTGCTCATAGGGAT 59.811 55.000 0.00 0.00 31.08 3.85
618 663 0.032515 TTCGGAGGTGCTCATAGGGA 60.033 55.000 0.00 0.00 31.08 4.20
619 664 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
620 665 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
621 666 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
622 667 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
623 668 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
624 669 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
625 670 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
626 671 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
627 672 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
629 674 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
630 675 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
632 677 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
633 678 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
634 679 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
636 681 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
637 682 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
639 684 2.175878 AATGATATGCCGGCTCAGTC 57.824 50.000 29.70 19.55 0.00 3.51
640 685 2.620115 CAAAATGATATGCCGGCTCAGT 59.380 45.455 29.70 19.53 0.00 3.41
642 687 2.929641 TCAAAATGATATGCCGGCTCA 58.070 42.857 29.70 23.34 0.00 4.26
643 688 3.988379 TTCAAAATGATATGCCGGCTC 57.012 42.857 29.70 17.89 0.00 4.70
644 689 4.942761 ATTTCAAAATGATATGCCGGCT 57.057 36.364 29.70 15.76 0.00 5.52
645 690 5.989551 AAATTTCAAAATGATATGCCGGC 57.010 34.783 22.73 22.73 0.00 6.13
647 692 7.906611 TCGTAAATTTCAAAATGATATGCCG 57.093 32.000 0.00 0.00 0.00 5.69
653 698 7.537306 CGGTGACTTCGTAAATTTCAAAATGAT 59.463 33.333 0.00 0.00 0.00 2.45
654 699 6.853872 CGGTGACTTCGTAAATTTCAAAATGA 59.146 34.615 0.00 0.00 0.00 2.57
655 700 6.635239 ACGGTGACTTCGTAAATTTCAAAATG 59.365 34.615 0.00 0.00 39.22 2.32
656 701 6.731164 ACGGTGACTTCGTAAATTTCAAAAT 58.269 32.000 0.00 0.00 39.22 1.82
657 702 6.121613 ACGGTGACTTCGTAAATTTCAAAA 57.878 33.333 0.00 0.00 39.22 2.44
659 704 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
660 705 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
661 706 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
662 707 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
664 709 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
665 710 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
666 711 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
667 712 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
668 713 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
670 715 0.320697 AAGGTGCCTACGGTGACTTC 59.679 55.000 0.00 0.00 0.00 3.01
672 717 1.119574 ACAAGGTGCCTACGGTGACT 61.120 55.000 0.00 0.00 0.00 3.41
673 718 0.669625 GACAAGGTGCCTACGGTGAC 60.670 60.000 0.00 0.00 0.00 3.67
674 719 1.669440 GACAAGGTGCCTACGGTGA 59.331 57.895 0.00 0.00 0.00 4.02
675 720 1.736645 CGACAAGGTGCCTACGGTG 60.737 63.158 0.00 0.00 0.00 4.94
676 721 2.151049 GACGACAAGGTGCCTACGGT 62.151 60.000 13.48 4.36 0.00 4.83
678 723 1.800315 CGACGACAAGGTGCCTACG 60.800 63.158 0.00 9.50 0.00 3.51
679 724 0.731855 GTCGACGACAAGGTGCCTAC 60.732 60.000 22.66 0.00 32.09 3.18
680 725 1.582968 GTCGACGACAAGGTGCCTA 59.417 57.895 22.66 0.00 32.09 3.93
681 726 2.338984 GTCGACGACAAGGTGCCT 59.661 61.111 22.66 0.00 32.09 4.75
682 727 3.103911 CGTCGACGACAAGGTGCC 61.104 66.667 33.35 0.00 43.02 5.01
683 728 3.103911 CCGTCGACGACAAGGTGC 61.104 66.667 37.65 0.00 43.02 5.01
685 730 2.195567 TTCCCGTCGACGACAAGGT 61.196 57.895 37.65 0.00 43.02 3.50
689 734 3.279116 ACGTTCCCGTCGACGACA 61.279 61.111 37.65 21.01 46.28 4.35
701 746 2.814280 TTCAGTGGGAGAAGACGTTC 57.186 50.000 0.00 0.00 0.00 3.95
703 748 2.232452 CTCATTCAGTGGGAGAAGACGT 59.768 50.000 0.00 0.00 0.00 4.34
709 754 3.099905 ACGATTCTCATTCAGTGGGAGA 58.900 45.455 0.00 6.13 38.89 3.71
710 755 3.452474 GACGATTCTCATTCAGTGGGAG 58.548 50.000 0.00 0.00 38.89 4.30
711 756 2.159240 CGACGATTCTCATTCAGTGGGA 60.159 50.000 0.00 0.00 34.83 4.37
712 757 2.159240 TCGACGATTCTCATTCAGTGGG 60.159 50.000 0.00 0.00 0.00 4.61
713 758 3.150848 TCGACGATTCTCATTCAGTGG 57.849 47.619 0.00 0.00 0.00 4.00
714 759 5.515548 TTTTCGACGATTCTCATTCAGTG 57.484 39.130 0.00 0.00 0.00 3.66
715 760 6.591834 AGAATTTTCGACGATTCTCATTCAGT 59.408 34.615 13.86 0.00 37.96 3.41
716 761 6.998338 AGAATTTTCGACGATTCTCATTCAG 58.002 36.000 13.86 0.00 37.96 3.02
717 762 6.968131 AGAATTTTCGACGATTCTCATTCA 57.032 33.333 13.86 0.00 37.96 2.57
718 763 9.755064 TTTTAGAATTTTCGACGATTCTCATTC 57.245 29.630 20.03 9.88 40.69 2.67
742 787 9.585099 TGCTCGCATTTATTCTTGAATTTATTT 57.415 25.926 0.95 0.00 0.00 1.40
743 788 9.023967 GTGCTCGCATTTATTCTTGAATTTATT 57.976 29.630 0.95 0.00 0.00 1.40
745 790 6.972328 GGTGCTCGCATTTATTCTTGAATTTA 59.028 34.615 0.95 0.00 0.00 1.40
747 792 5.105797 TGGTGCTCGCATTTATTCTTGAATT 60.106 36.000 0.95 0.00 0.00 2.17
748 793 4.398988 TGGTGCTCGCATTTATTCTTGAAT 59.601 37.500 0.00 1.35 0.00 2.57
749 794 3.755905 TGGTGCTCGCATTTATTCTTGAA 59.244 39.130 0.00 0.00 0.00 2.69
750 795 3.342719 TGGTGCTCGCATTTATTCTTGA 58.657 40.909 0.00 0.00 0.00 3.02
752 797 4.009675 TCTTGGTGCTCGCATTTATTCTT 58.990 39.130 0.00 0.00 0.00 2.52
753 798 3.609853 TCTTGGTGCTCGCATTTATTCT 58.390 40.909 0.00 0.00 0.00 2.40
754 799 4.558538 ATCTTGGTGCTCGCATTTATTC 57.441 40.909 0.00 0.00 0.00 1.75
755 800 4.989279 AATCTTGGTGCTCGCATTTATT 57.011 36.364 0.00 0.00 0.00 1.40
758 803 4.782019 TTAAATCTTGGTGCTCGCATTT 57.218 36.364 0.00 0.00 0.00 2.32
763 808 4.690748 TGAGAGTTTAAATCTTGGTGCTCG 59.309 41.667 0.00 0.00 0.00 5.03
765 810 5.416952 CCATGAGAGTTTAAATCTTGGTGCT 59.583 40.000 11.44 0.00 34.93 4.40
766 811 5.415701 TCCATGAGAGTTTAAATCTTGGTGC 59.584 40.000 16.11 0.00 38.65 5.01
767 812 7.636150 ATCCATGAGAGTTTAAATCTTGGTG 57.364 36.000 16.11 4.96 38.65 4.17
768 813 9.401058 CTAATCCATGAGAGTTTAAATCTTGGT 57.599 33.333 16.11 6.44 38.65 3.67
769 814 8.844244 CCTAATCCATGAGAGTTTAAATCTTGG 58.156 37.037 12.70 12.70 38.81 3.61
770 815 8.844244 CCCTAATCCATGAGAGTTTAAATCTTG 58.156 37.037 0.00 0.00 0.00 3.02
771 816 8.781951 TCCCTAATCCATGAGAGTTTAAATCTT 58.218 33.333 0.00 0.00 0.00 2.40
775 820 9.847224 GTTATCCCTAATCCATGAGAGTTTAAA 57.153 33.333 0.00 0.00 0.00 1.52
776 821 8.998814 TGTTATCCCTAATCCATGAGAGTTTAA 58.001 33.333 0.00 0.00 0.00 1.52
777 822 8.561536 TGTTATCCCTAATCCATGAGAGTTTA 57.438 34.615 0.00 0.00 0.00 2.01
778 823 7.348274 TCTGTTATCCCTAATCCATGAGAGTTT 59.652 37.037 0.00 0.00 0.00 2.66
779 824 6.846505 TCTGTTATCCCTAATCCATGAGAGTT 59.153 38.462 0.00 0.00 0.00 3.01
780 825 6.385443 TCTGTTATCCCTAATCCATGAGAGT 58.615 40.000 0.00 0.00 0.00 3.24
781 826 6.496565 ACTCTGTTATCCCTAATCCATGAGAG 59.503 42.308 0.00 0.00 0.00 3.20
782 827 6.385443 ACTCTGTTATCCCTAATCCATGAGA 58.615 40.000 0.00 0.00 0.00 3.27
784 829 6.385443 AGACTCTGTTATCCCTAATCCATGA 58.615 40.000 0.00 0.00 0.00 3.07
786 831 6.629156 AGAGACTCTGTTATCCCTAATCCAT 58.371 40.000 3.56 0.00 0.00 3.41
787 832 6.031964 AGAGACTCTGTTATCCCTAATCCA 57.968 41.667 3.56 0.00 0.00 3.41
788 833 6.311735 AGAGAGACTCTGTTATCCCTAATCC 58.688 44.000 10.44 0.00 39.62 3.01
789 834 8.927675 TTAGAGAGACTCTGTTATCCCTAATC 57.072 38.462 10.44 0.00 41.37 1.75
792 837 9.796180 GTTATTAGAGAGACTCTGTTATCCCTA 57.204 37.037 10.44 0.19 41.37 3.53
793 838 7.726738 GGTTATTAGAGAGACTCTGTTATCCCT 59.273 40.741 10.44 1.21 41.37 4.20
794 839 7.506261 TGGTTATTAGAGAGACTCTGTTATCCC 59.494 40.741 10.44 9.42 41.37 3.85
795 840 8.466617 TGGTTATTAGAGAGACTCTGTTATCC 57.533 38.462 10.44 4.76 41.37 2.59
797 842 9.084533 GGATGGTTATTAGAGAGACTCTGTTAT 57.915 37.037 10.44 8.03 41.37 1.89
798 843 8.059461 TGGATGGTTATTAGAGAGACTCTGTTA 58.941 37.037 10.44 0.00 41.37 2.41
799 844 6.897966 TGGATGGTTATTAGAGAGACTCTGTT 59.102 38.462 10.44 0.33 41.37 3.16
802 847 6.325286 GGTTGGATGGTTATTAGAGAGACTCT 59.675 42.308 4.14 4.14 43.83 3.24
804 849 5.964477 TGGTTGGATGGTTATTAGAGAGACT 59.036 40.000 0.00 0.00 0.00 3.24
805 850 6.049790 GTGGTTGGATGGTTATTAGAGAGAC 58.950 44.000 0.00 0.00 0.00 3.36
806 851 5.724370 TGTGGTTGGATGGTTATTAGAGAGA 59.276 40.000 0.00 0.00 0.00 3.10
808 853 5.487488 ACTGTGGTTGGATGGTTATTAGAGA 59.513 40.000 0.00 0.00 0.00 3.10
809 854 5.745227 ACTGTGGTTGGATGGTTATTAGAG 58.255 41.667 0.00 0.00 0.00 2.43
810 855 5.772393 ACTGTGGTTGGATGGTTATTAGA 57.228 39.130 0.00 0.00 0.00 2.10
811 856 6.432783 TCAAACTGTGGTTGGATGGTTATTAG 59.567 38.462 0.00 0.00 35.63 1.73
812 857 6.307776 TCAAACTGTGGTTGGATGGTTATTA 58.692 36.000 0.00 0.00 35.63 0.98
814 859 4.735369 TCAAACTGTGGTTGGATGGTTAT 58.265 39.130 0.00 0.00 35.63 1.89
815 860 4.171878 TCAAACTGTGGTTGGATGGTTA 57.828 40.909 0.00 0.00 35.63 2.85
816 861 3.025322 TCAAACTGTGGTTGGATGGTT 57.975 42.857 0.00 0.00 35.63 3.67
817 862 2.746279 TCAAACTGTGGTTGGATGGT 57.254 45.000 0.00 0.00 35.63 3.55
818 863 4.309099 CAAATCAAACTGTGGTTGGATGG 58.691 43.478 0.28 0.00 43.21 3.51
819 864 3.742369 GCAAATCAAACTGTGGTTGGATG 59.258 43.478 0.28 0.00 43.21 3.51
820 865 3.642848 AGCAAATCAAACTGTGGTTGGAT 59.357 39.130 0.00 0.00 45.20 3.41
821 866 3.030291 AGCAAATCAAACTGTGGTTGGA 58.970 40.909 0.00 0.00 39.43 3.53
823 868 3.044986 CGAGCAAATCAAACTGTGGTTG 58.955 45.455 0.00 0.00 35.63 3.77
824 869 2.687935 ACGAGCAAATCAAACTGTGGTT 59.312 40.909 0.00 0.00 37.24 3.67
825 870 2.297701 ACGAGCAAATCAAACTGTGGT 58.702 42.857 0.00 0.00 0.00 4.16
826 871 3.498397 ACTACGAGCAAATCAAACTGTGG 59.502 43.478 0.00 0.00 0.00 4.17
828 873 4.127171 ACACTACGAGCAAATCAAACTGT 58.873 39.130 0.00 0.00 0.00 3.55
829 874 4.732285 ACACTACGAGCAAATCAAACTG 57.268 40.909 0.00 0.00 0.00 3.16
832 877 6.072728 AGCAAATACACTACGAGCAAATCAAA 60.073 34.615 0.00 0.00 0.00 2.69
833 878 5.411361 AGCAAATACACTACGAGCAAATCAA 59.589 36.000 0.00 0.00 0.00 2.57
837 882 3.120338 GCAGCAAATACACTACGAGCAAA 60.120 43.478 0.00 0.00 0.00 3.68
838 883 2.415168 GCAGCAAATACACTACGAGCAA 59.585 45.455 0.00 0.00 0.00 3.91
839 884 1.999735 GCAGCAAATACACTACGAGCA 59.000 47.619 0.00 0.00 0.00 4.26
840 885 1.327764 GGCAGCAAATACACTACGAGC 59.672 52.381 0.00 0.00 0.00 5.03
842 887 1.067425 ACGGCAGCAAATACACTACGA 60.067 47.619 0.00 0.00 0.00 3.43
844 889 2.603560 GAGACGGCAGCAAATACACTAC 59.396 50.000 0.00 0.00 0.00 2.73
847 892 1.661112 GAGAGACGGCAGCAAATACAC 59.339 52.381 0.00 0.00 0.00 2.90
864 909 2.362503 ACCTGGATCACCGCGAGA 60.363 61.111 8.23 5.51 39.42 4.04
914 959 1.508808 GGGTGCGCTTTTCCGTTACA 61.509 55.000 9.73 0.00 0.00 2.41
978 1023 1.282738 GGATTAACGGGTCAGGGGAAA 59.717 52.381 0.00 0.00 0.00 3.13
987 1032 6.226052 GGAGATTTATAACGGATTAACGGGT 58.774 40.000 0.00 0.00 38.39 5.28
990 1035 5.164022 GGCGGAGATTTATAACGGATTAACG 60.164 44.000 0.00 0.00 40.31 3.18
992 1037 5.856156 TGGCGGAGATTTATAACGGATTAA 58.144 37.500 0.00 0.00 0.00 1.40
993 1038 5.471556 TGGCGGAGATTTATAACGGATTA 57.528 39.130 0.00 0.00 0.00 1.75
994 1039 4.345859 TGGCGGAGATTTATAACGGATT 57.654 40.909 0.00 0.00 0.00 3.01
1008 1055 0.103937 GAGAGTTGGAGATGGCGGAG 59.896 60.000 0.00 0.00 0.00 4.63
1051 1101 4.414846 AGAGATGATGGGGATTGTAAGCTT 59.585 41.667 3.48 3.48 0.00 3.74
1054 1104 5.303971 GTGAGAGATGATGGGGATTGTAAG 58.696 45.833 0.00 0.00 0.00 2.34
1086 1139 2.889170 TGTATGGGGTTGCTTTGCTA 57.111 45.000 0.00 0.00 0.00 3.49
1117 5323 3.414700 CGGTCGCTTGCTTCGCTT 61.415 61.111 0.00 0.00 0.00 4.68
1295 5505 3.699894 CCAGACCAGCCGAGCAGT 61.700 66.667 0.00 0.00 0.00 4.40
1369 5579 4.507916 TCTCCTCCTCCTCCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
1475 5685 2.267642 GCGGAGTGGTACATGGCA 59.732 61.111 0.00 0.00 44.52 4.92
1553 5763 2.202623 GTCTGCTAGTGTCGGCGG 60.203 66.667 7.21 0.00 36.28 6.13
1565 5775 1.068748 CAGGCACATCAACTTGTCTGC 60.069 52.381 0.00 0.00 38.55 4.26
1574 5784 0.473755 AGGACACACAGGCACATCAA 59.526 50.000 0.00 0.00 0.00 2.57
1584 5794 6.237901 ACAATTATAGCAGAAAGGACACACA 58.762 36.000 0.00 0.00 0.00 3.72
1588 5798 7.230510 ACAACAACAATTATAGCAGAAAGGACA 59.769 33.333 0.00 0.00 0.00 4.02
1591 5801 7.592938 TGACAACAACAATTATAGCAGAAAGG 58.407 34.615 0.00 0.00 0.00 3.11
1592 5802 9.069078 CATGACAACAACAATTATAGCAGAAAG 57.931 33.333 0.00 0.00 0.00 2.62
1593 5803 8.575589 ACATGACAACAACAATTATAGCAGAAA 58.424 29.630 0.00 0.00 0.00 2.52
1594 5804 8.022550 CACATGACAACAACAATTATAGCAGAA 58.977 33.333 0.00 0.00 0.00 3.02
1595 5805 7.174772 ACACATGACAACAACAATTATAGCAGA 59.825 33.333 0.00 0.00 0.00 4.26
1596 5806 7.307694 ACACATGACAACAACAATTATAGCAG 58.692 34.615 0.00 0.00 0.00 4.24
1597 5807 7.213216 ACACATGACAACAACAATTATAGCA 57.787 32.000 0.00 0.00 0.00 3.49
1603 5813 8.770438 AACTTTAACACATGACAACAACAATT 57.230 26.923 0.00 0.00 0.00 2.32
1604 5814 8.770438 AAACTTTAACACATGACAACAACAAT 57.230 26.923 0.00 0.00 0.00 2.71
1605 5815 9.347934 CTAAACTTTAACACATGACAACAACAA 57.652 29.630 0.00 0.00 0.00 2.83
1606 5816 8.731605 TCTAAACTTTAACACATGACAACAACA 58.268 29.630 0.00 0.00 0.00 3.33
1607 5817 9.221775 CTCTAAACTTTAACACATGACAACAAC 57.778 33.333 0.00 0.00 0.00 3.32
1608 5818 8.402472 CCTCTAAACTTTAACACATGACAACAA 58.598 33.333 0.00 0.00 0.00 2.83
1610 5820 8.149973 TCCTCTAAACTTTAACACATGACAAC 57.850 34.615 0.00 0.00 0.00 3.32
1612 5822 7.732025 TCTCCTCTAAACTTTAACACATGACA 58.268 34.615 0.00 0.00 0.00 3.58
1614 5824 8.190326 TCTCTCCTCTAAACTTTAACACATGA 57.810 34.615 0.00 0.00 0.00 3.07
1615 5825 7.547370 CCTCTCTCCTCTAAACTTTAACACATG 59.453 40.741 0.00 0.00 0.00 3.21
1616 5826 7.235812 ACCTCTCTCCTCTAAACTTTAACACAT 59.764 37.037 0.00 0.00 0.00 3.21
1624 5871 3.010361 TCCGACCTCTCTCCTCTAAACTT 59.990 47.826 0.00 0.00 0.00 2.66
1627 5874 3.733883 TTCCGACCTCTCTCCTCTAAA 57.266 47.619 0.00 0.00 0.00 1.85
1710 5957 1.209127 CGCCGGTAAAACAAGCAGG 59.791 57.895 1.90 0.00 0.00 4.85
1723 5970 0.248215 GATTGAAACATCTGCGCCGG 60.248 55.000 4.18 0.00 0.00 6.13
1724 5971 0.729116 AGATTGAAACATCTGCGCCG 59.271 50.000 4.18 0.00 0.00 6.46
1758 6005 6.163135 ACTGCAGATCCCTAATGTTACTAC 57.837 41.667 23.35 0.00 0.00 2.73
1759 6006 6.808321 AACTGCAGATCCCTAATGTTACTA 57.192 37.500 23.35 0.00 0.00 1.82
1760 6007 5.700402 AACTGCAGATCCCTAATGTTACT 57.300 39.130 23.35 0.00 0.00 2.24
1769 6016 2.240667 AGCATGTTAACTGCAGATCCCT 59.759 45.455 23.35 0.00 42.15 4.20
1819 6066 2.034685 GGTGTTCAGAACCAAAAGAGCC 59.965 50.000 10.93 0.00 37.65 4.70
1823 6070 4.568152 AATCGGTGTTCAGAACCAAAAG 57.432 40.909 10.93 0.00 37.57 2.27
1830 6111 5.800296 TCCAGAATTAATCGGTGTTCAGAA 58.200 37.500 0.00 0.00 0.00 3.02
1867 6148 4.465512 CAACATGGAGCGCGGCAC 62.466 66.667 8.83 0.00 0.00 5.01
1869 6150 4.166011 GACAACATGGAGCGCGGC 62.166 66.667 8.83 0.00 0.00 6.53
1870 6151 1.970917 GAAGACAACATGGAGCGCGG 61.971 60.000 8.83 0.00 0.00 6.46
1871 6152 1.016130 AGAAGACAACATGGAGCGCG 61.016 55.000 0.00 0.00 0.00 6.86
1906 6187 2.035066 ACAAATGACACAGAAGCCTTGC 59.965 45.455 0.00 0.00 0.00 4.01
1907 6188 3.316029 TGACAAATGACACAGAAGCCTTG 59.684 43.478 0.00 0.00 0.00 3.61
1909 6190 3.213206 TGACAAATGACACAGAAGCCT 57.787 42.857 0.00 0.00 0.00 4.58
1910 6191 4.437930 GCTATGACAAATGACACAGAAGCC 60.438 45.833 0.00 0.00 0.00 4.35
1950 6233 7.136119 CAGCTGCAATGTTTTTGATTTGATTT 58.864 30.769 0.00 0.00 0.00 2.17
1951 6234 6.664515 CAGCTGCAATGTTTTTGATTTGATT 58.335 32.000 0.00 0.00 0.00 2.57
1952 6235 5.334569 GCAGCTGCAATGTTTTTGATTTGAT 60.335 36.000 33.36 0.00 41.59 2.57
1953 6236 4.024725 GCAGCTGCAATGTTTTTGATTTGA 60.025 37.500 33.36 0.00 41.59 2.69
1954 6237 4.024387 AGCAGCTGCAATGTTTTTGATTTG 60.024 37.500 38.24 0.00 45.16 2.32
1989 6276 2.817258 GCTTGTGTATGCAGGTTGGTAA 59.183 45.455 0.00 0.00 0.00 2.85
1999 6286 1.818850 CGCAATCAGCTTGTGTATGC 58.181 50.000 0.00 0.00 42.61 3.14
2010 6297 1.234615 ACCCAACCGAACGCAATCAG 61.235 55.000 0.00 0.00 0.00 2.90
2017 6304 2.981350 CCCCAACCCAACCGAACG 60.981 66.667 0.00 0.00 0.00 3.95
2081 6385 8.687292 ATGGTTCATCAGTTCGTAGTACTATA 57.313 34.615 5.75 0.00 0.00 1.31
2082 6386 7.584122 ATGGTTCATCAGTTCGTAGTACTAT 57.416 36.000 5.75 0.00 0.00 2.12
2083 6387 7.400599 AATGGTTCATCAGTTCGTAGTACTA 57.599 36.000 0.00 0.00 0.00 1.82
2084 6388 5.916661 ATGGTTCATCAGTTCGTAGTACT 57.083 39.130 0.00 0.00 0.00 2.73
2085 6389 6.474751 GGTAATGGTTCATCAGTTCGTAGTAC 59.525 42.308 0.00 0.00 0.00 2.73
2086 6390 6.153170 TGGTAATGGTTCATCAGTTCGTAGTA 59.847 38.462 0.00 0.00 0.00 1.82
2137 6783 8.045176 ACTTTGTGCAATTAAGTAGAAGATCC 57.955 34.615 7.38 0.00 30.75 3.36
2172 6819 1.734477 CAACTGGCCGACTGACTCG 60.734 63.158 0.00 0.00 42.54 4.18
2183 6830 1.862602 CTACCGGGCAAACAACTGGC 61.863 60.000 6.32 0.00 41.03 4.85
2206 6861 3.378339 GCACTTGACACTACTACACGTT 58.622 45.455 0.00 0.00 0.00 3.99
2208 6863 2.325761 GGCACTTGACACTACTACACG 58.674 52.381 0.00 0.00 0.00 4.49
2209 6864 2.685100 GGGCACTTGACACTACTACAC 58.315 52.381 0.00 0.00 0.00 2.90
2210 6865 1.271379 CGGGCACTTGACACTACTACA 59.729 52.381 0.00 0.00 0.00 2.74
2211 6866 1.403780 CCGGGCACTTGACACTACTAC 60.404 57.143 0.00 0.00 0.00 2.73
2212 6867 0.892755 CCGGGCACTTGACACTACTA 59.107 55.000 0.00 0.00 0.00 1.82
2213 6868 1.671742 CCGGGCACTTGACACTACT 59.328 57.895 0.00 0.00 0.00 2.57
2214 6869 2.033194 GCCGGGCACTTGACACTAC 61.033 63.158 15.62 0.00 0.00 2.73
2215 6870 2.345991 GCCGGGCACTTGACACTA 59.654 61.111 15.62 0.00 0.00 2.74
2216 6871 3.832237 CTGCCGGGCACTTGACACT 62.832 63.158 19.77 0.00 33.79 3.55
2217 6872 3.357079 CTGCCGGGCACTTGACAC 61.357 66.667 19.77 0.00 33.79 3.67
2218 6873 4.641645 CCTGCCGGGCACTTGACA 62.642 66.667 19.77 0.00 33.79 3.58
2274 6929 7.479897 TTTGCGAATAGTATAATACGGCAAA 57.520 32.000 16.51 16.51 0.00 3.68
2282 6937 7.315142 CCAATGCCATTTGCGAATAGTATAAT 58.685 34.615 0.00 0.00 45.60 1.28
2414 7081 1.565305 GATGCTTCGCGAGACAGAAT 58.435 50.000 9.59 3.81 41.84 2.40
2436 7103 0.179097 CTTCAGCCGAGCCTTCTACC 60.179 60.000 0.00 0.00 0.00 3.18
2461 7128 6.365520 AGTTCCAAAACTGTAGTCATTTCCT 58.634 36.000 0.00 0.00 44.13 3.36
2508 7175 1.301009 GCCCGATCTCCAATCGACC 60.301 63.158 8.88 0.00 43.59 4.79
2509 7176 1.661821 CGCCCGATCTCCAATCGAC 60.662 63.158 8.88 0.70 43.59 4.20
2510 7177 2.728180 CGCCCGATCTCCAATCGA 59.272 61.111 8.88 0.00 43.59 3.59
2511 7178 2.356313 CCGCCCGATCTCCAATCG 60.356 66.667 0.58 0.58 40.86 3.34
2512 7179 1.005630 CTCCGCCCGATCTCCAATC 60.006 63.158 0.00 0.00 0.00 2.67
2513 7180 2.511452 CCTCCGCCCGATCTCCAAT 61.511 63.158 0.00 0.00 0.00 3.16
2525 7192 0.458025 CTGTTAGTCGAACCCTCCGC 60.458 60.000 0.00 0.00 37.22 5.54
2532 7199 5.458891 TGAGCTTTACTCTGTTAGTCGAAC 58.541 41.667 0.00 0.00 46.41 3.95
2549 7216 7.116805 GCTTAATAAAACAGTTGCATTGAGCTT 59.883 33.333 19.63 0.16 45.94 3.74
2554 7221 5.118357 TGCGCTTAATAAAACAGTTGCATTG 59.882 36.000 9.73 0.00 0.00 2.82
2607 7304 1.518367 TGAAAGTGGTGAAGGAGGGT 58.482 50.000 0.00 0.00 0.00 4.34
2608 7305 2.656947 TTGAAAGTGGTGAAGGAGGG 57.343 50.000 0.00 0.00 0.00 4.30
2649 7346 4.726583 ACCACTCTACAGTCTACACTTCA 58.273 43.478 0.00 0.00 0.00 3.02
2660 7357 5.392165 GCTACTGTCAGTTACCACTCTACAG 60.392 48.000 11.54 10.70 43.68 2.74
2716 7428 4.852134 TTTTGCTGCTCAAAAGATAGCA 57.148 36.364 11.55 0.00 46.44 3.49
2738 7450 4.383118 GCCAGGAGATAGTTGAGCACTTAA 60.383 45.833 0.00 0.00 36.88 1.85
2751 7463 1.627329 GATGGATGCTGCCAGGAGATA 59.373 52.381 0.00 0.00 42.15 1.98
2771 7484 4.463891 AGTTAAAGCATGATTTGGGTCTGG 59.536 41.667 18.87 0.00 0.00 3.86
2812 7525 4.577693 ACTATTGATGCGCATGAAGATTGT 59.422 37.500 30.76 15.13 0.00 2.71
2818 7531 3.940852 ACTGAACTATTGATGCGCATGAA 59.059 39.130 30.76 27.23 0.00 2.57
2824 7537 5.344066 AGTACTGACTGAACTATTGATGCG 58.656 41.667 0.00 0.00 33.41 4.73
2860 7573 3.764237 TGCTTTCGTAGGGTTCTTTCT 57.236 42.857 0.00 0.00 0.00 2.52
2869 7582 5.064834 GGTTATTTCCTCTTGCTTTCGTAGG 59.935 44.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.