Multiple sequence alignment - TraesCS1A01G116300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G116300 chr1A 100.000 1804 0 0 1616 3419 121881035 121879232 0.000000e+00 3332.0
1 TraesCS1A01G116300 chr1A 100.000 1296 0 0 1 1296 121882650 121881355 0.000000e+00 2394.0
2 TraesCS1A01G116300 chr1A 100.000 47 0 0 479 525 121882219 121882173 1.690000e-13 87.9
3 TraesCS1A01G116300 chr4A 95.608 1275 29 7 1617 2889 11706321 11707570 0.000000e+00 2019.0
4 TraesCS1A01G116300 chr4A 91.315 806 52 5 1791 2587 319831713 319830917 0.000000e+00 1085.0
5 TraesCS1A01G116300 chr4A 96.604 530 17 1 2891 3419 11707611 11708140 0.000000e+00 878.0
6 TraesCS1A01G116300 chr4A 91.342 462 36 4 833 1293 11705841 11706299 2.240000e-176 628.0
7 TraesCS1A01G116300 chr4A 94.524 347 18 1 833 1178 28272779 28273125 5.020000e-148 534.0
8 TraesCS1A01G116300 chr4A 92.414 290 18 3 540 826 11705460 11705748 8.830000e-111 411.0
9 TraesCS1A01G116300 chr4A 89.103 156 15 2 672 826 28272559 28272713 3.480000e-45 193.0
10 TraesCS1A01G116300 chr4A 86.538 104 13 1 538 640 419969549 419969652 2.790000e-21 113.0
11 TraesCS1A01G116300 chr4A 96.774 62 2 0 416 477 549887376 549887437 1.680000e-18 104.0
12 TraesCS1A01G116300 chr4A 96.774 62 2 0 416 477 589820773 589820834 1.680000e-18 104.0
13 TraesCS1A01G116300 chr4A 92.453 53 3 1 476 527 587254289 587254237 1.320000e-09 75.0
14 TraesCS1A01G116300 chr6A 95.133 1274 34 7 1619 2889 233813257 233814505 0.000000e+00 1984.0
15 TraesCS1A01G116300 chr6A 96.067 534 20 1 2887 3419 233814542 233815075 0.000000e+00 869.0
16 TraesCS1A01G116300 chr6A 87.037 810 47 22 538 1293 233812426 233813231 0.000000e+00 861.0
17 TraesCS1A01G116300 chr6A 84.068 295 33 11 540 822 134201294 134201002 4.350000e-69 272.0
18 TraesCS1A01G116300 chr6A 100.000 62 0 0 416 477 610384003 610384064 7.750000e-22 115.0
19 TraesCS1A01G116300 chr6A 96.774 62 2 0 416 477 558947600 558947661 1.680000e-18 104.0
20 TraesCS1A01G116300 chr6A 100.000 46 0 0 479 524 610384019 610384064 6.080000e-13 86.1
21 TraesCS1A01G116300 chr6A 95.652 46 2 0 479 524 558947616 558947661 1.320000e-09 75.0
22 TraesCS1A01G116300 chr7D 96.462 1187 18 6 1708 2889 66988437 66987270 0.000000e+00 1938.0
23 TraesCS1A01G116300 chr7D 88.819 796 38 21 538 1296 66989641 66988860 0.000000e+00 929.0
24 TraesCS1A01G116300 chr7D 97.566 534 12 1 2887 3419 66987233 66986700 0.000000e+00 913.0
25 TraesCS1A01G116300 chr7D 98.387 62 1 0 416 477 66989599 66989660 3.610000e-20 110.0
26 TraesCS1A01G116300 chr7D 97.826 46 1 0 479 524 66989615 66989660 2.830000e-11 80.5
27 TraesCS1A01G116300 chr2B 93.412 1275 37 10 1617 2889 621182890 621184119 0.000000e+00 1845.0
28 TraesCS1A01G116300 chr2B 95.506 534 20 3 2887 3419 621184156 621184686 0.000000e+00 850.0
29 TraesCS1A01G116300 chr2B 90.977 532 43 5 2891 3419 254138227 254138756 0.000000e+00 712.0
30 TraesCS1A01G116300 chr2B 84.430 745 63 27 597 1293 621182126 621182865 0.000000e+00 684.0
31 TraesCS1A01G116300 chr2B 88.182 550 38 11 1624 2172 254137245 254137768 6.230000e-177 630.0
32 TraesCS1A01G116300 chr3B 90.677 1137 81 8 1762 2889 511031358 511030238 0.000000e+00 1489.0
33 TraesCS1A01G116300 chr3B 94.813 347 17 1 833 1178 395846521 395846175 1.080000e-149 540.0
34 TraesCS1A01G116300 chr3B 90.559 286 17 9 549 826 395846864 395846581 1.500000e-98 370.0
35 TraesCS1A01G116300 chr3B 93.617 47 3 0 3373 3419 511029680 511029634 1.700000e-08 71.3
36 TraesCS1A01G116300 chr4B 90.589 1137 82 8 1762 2889 16551846 16552966 0.000000e+00 1483.0
37 TraesCS1A01G116300 chr4B 89.534 1137 94 7 1762 2889 550673906 550675026 0.000000e+00 1417.0
38 TraesCS1A01G116300 chr4B 90.167 478 44 3 2887 3362 550675063 550675539 1.350000e-173 619.0
39 TraesCS1A01G116300 chr4B 91.892 185 9 3 538 717 104746146 104745963 1.570000e-63 254.0
40 TraesCS1A01G116300 chr4B 96.774 62 2 0 416 477 104746104 104746165 1.680000e-18 104.0
41 TraesCS1A01G116300 chr4B 95.238 42 2 0 3378 3419 550675540 550675581 2.200000e-07 67.6
42 TraesCS1A01G116300 chr7A 88.869 1141 96 11 1762 2889 228677161 228676039 0.000000e+00 1375.0
43 TraesCS1A01G116300 chr7A 90.546 476 41 4 2887 3360 228676002 228675529 8.050000e-176 627.0
44 TraesCS1A01G116300 chr7A 97.826 46 1 0 479 524 64424093 64424138 2.830000e-11 80.5
45 TraesCS1A01G116300 chr2A 97.207 716 17 2 2177 2889 642960941 642960226 0.000000e+00 1208.0
46 TraesCS1A01G116300 chr2A 93.553 760 44 5 538 1296 642962408 642961653 0.000000e+00 1127.0
47 TraesCS1A01G116300 chr2A 96.449 535 16 3 2887 3419 642960190 642959657 0.000000e+00 880.0
48 TraesCS1A01G116300 chr2A 95.775 497 12 2 1638 2133 642961430 642960942 0.000000e+00 793.0
49 TraesCS1A01G116300 chr2A 98.387 62 1 0 416 477 642962366 642962427 3.610000e-20 110.0
50 TraesCS1A01G116300 chr2A 97.826 46 1 0 479 524 642962382 642962427 2.830000e-11 80.5
51 TraesCS1A01G116300 chr7B 92.884 534 36 2 2887 3419 725791078 725791610 0.000000e+00 774.0
52 TraesCS1A01G116300 chr7B 95.627 343 14 1 2547 2889 725790700 725791041 1.790000e-152 549.0
53 TraesCS1A01G116300 chr7B 94.236 347 19 1 833 1178 553229386 553229732 2.340000e-146 529.0
54 TraesCS1A01G116300 chr7B 87.379 103 13 0 538 640 715284239 715284341 5.990000e-23 119.0
55 TraesCS1A01G116300 chrUn 93.660 347 21 1 833 1178 391724710 391725056 5.060000e-143 518.0
56 TraesCS1A01G116300 chrUn 89.103 156 15 2 672 826 391724490 391724644 3.480000e-45 193.0
57 TraesCS1A01G116300 chr5A 96.078 102 4 0 538 639 554337268 554337369 2.110000e-37 167.0
58 TraesCS1A01G116300 chr5A 98.387 62 1 0 416 477 554337310 554337249 3.610000e-20 110.0
59 TraesCS1A01G116300 chr5A 95.918 49 2 0 479 527 554337294 554337246 2.830000e-11 80.5
60 TraesCS1A01G116300 chr5B 94.898 98 5 0 538 635 599529147 599529050 1.640000e-33 154.0
61 TraesCS1A01G116300 chr5B 94.898 98 5 0 538 635 599545433 599545336 1.640000e-33 154.0
62 TraesCS1A01G116300 chr5B 98.387 62 1 0 416 477 599545391 599545452 3.610000e-20 110.0
63 TraesCS1A01G116300 chr5B 97.826 46 1 0 479 524 599545407 599545452 2.830000e-11 80.5
64 TraesCS1A01G116300 chr1B 88.350 103 12 0 538 640 597720396 597720294 1.290000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G116300 chr1A 121879232 121882650 3418 True 1937.966667 3332 100.000000 1 3419 3 chr1A.!!$R1 3418
1 TraesCS1A01G116300 chr4A 319830917 319831713 796 True 1085.000000 1085 91.315000 1791 2587 1 chr4A.!!$R1 796
2 TraesCS1A01G116300 chr4A 11705460 11708140 2680 False 984.000000 2019 93.992000 540 3419 4 chr4A.!!$F4 2879
3 TraesCS1A01G116300 chr4A 28272559 28273125 566 False 363.500000 534 91.813500 672 1178 2 chr4A.!!$F5 506
4 TraesCS1A01G116300 chr6A 233812426 233815075 2649 False 1238.000000 1984 92.745667 538 3419 3 chr6A.!!$F1 2881
5 TraesCS1A01G116300 chr7D 66986700 66989641 2941 True 1260.000000 1938 94.282333 538 3419 3 chr7D.!!$R1 2881
6 TraesCS1A01G116300 chr2B 621182126 621184686 2560 False 1126.333333 1845 91.116000 597 3419 3 chr2B.!!$F2 2822
7 TraesCS1A01G116300 chr2B 254137245 254138756 1511 False 671.000000 712 89.579500 1624 3419 2 chr2B.!!$F1 1795
8 TraesCS1A01G116300 chr3B 511029634 511031358 1724 True 780.150000 1489 92.147000 1762 3419 2 chr3B.!!$R2 1657
9 TraesCS1A01G116300 chr3B 395846175 395846864 689 True 455.000000 540 92.686000 549 1178 2 chr3B.!!$R1 629
10 TraesCS1A01G116300 chr4B 16551846 16552966 1120 False 1483.000000 1483 90.589000 1762 2889 1 chr4B.!!$F1 1127
11 TraesCS1A01G116300 chr4B 550673906 550675581 1675 False 701.200000 1417 91.646333 1762 3419 3 chr4B.!!$F3 1657
12 TraesCS1A01G116300 chr7A 228675529 228677161 1632 True 1001.000000 1375 89.707500 1762 3360 2 chr7A.!!$R1 1598
13 TraesCS1A01G116300 chr2A 642959657 642962408 2751 True 1002.000000 1208 95.746000 538 3419 4 chr2A.!!$R1 2881
14 TraesCS1A01G116300 chr7B 725790700 725791610 910 False 661.500000 774 94.255500 2547 3419 2 chr7B.!!$F3 872
15 TraesCS1A01G116300 chrUn 391724490 391725056 566 False 355.500000 518 91.381500 672 1178 2 chrUn.!!$F1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.035152 ATGATGCTGACGGCTTCCAA 60.035 50.0 17.06 2.84 42.3 3.53 F
468 469 0.035439 TGATTTGGTTCTCCGCCCTC 60.035 55.0 0.00 0.00 36.3 4.30 F
474 475 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.0 0.00 0.00 0.0 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2133 1.887198 GCTCTAGCGGTCTAGCCATAA 59.113 52.381 9.34 0.0 41.59 1.90 R
2286 2408 9.685276 TGAGACACATACCTTGAATAATGAAAT 57.315 29.630 0.00 0.0 0.00 2.17 R
2837 2966 3.005539 AGTGGCTCCAGCGTCCAT 61.006 61.111 0.00 0.0 43.26 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.374402 CACCGTCGAGCTCCACCT 61.374 66.667 8.47 0.00 0.00 4.00
18 19 2.044555 CACCGTCGAGCTCCACCTA 61.045 63.158 8.47 0.00 0.00 3.08
19 20 1.076923 ACCGTCGAGCTCCACCTAT 60.077 57.895 8.47 0.00 0.00 2.57
20 21 1.102222 ACCGTCGAGCTCCACCTATC 61.102 60.000 8.47 0.00 0.00 2.08
21 22 1.101635 CCGTCGAGCTCCACCTATCA 61.102 60.000 8.47 0.00 0.00 2.15
22 23 0.955178 CGTCGAGCTCCACCTATCAT 59.045 55.000 8.47 0.00 0.00 2.45
23 24 2.152016 CGTCGAGCTCCACCTATCATA 58.848 52.381 8.47 0.00 0.00 2.15
24 25 2.095668 CGTCGAGCTCCACCTATCATAC 60.096 54.545 8.47 0.00 0.00 2.39
25 26 2.229302 GTCGAGCTCCACCTATCATACC 59.771 54.545 8.47 0.00 0.00 2.73
26 27 2.158519 TCGAGCTCCACCTATCATACCA 60.159 50.000 8.47 0.00 0.00 3.25
27 28 2.230025 CGAGCTCCACCTATCATACCAG 59.770 54.545 8.47 0.00 0.00 4.00
28 29 3.235200 GAGCTCCACCTATCATACCAGT 58.765 50.000 0.87 0.00 0.00 4.00
29 30 3.235200 AGCTCCACCTATCATACCAGTC 58.765 50.000 0.00 0.00 0.00 3.51
30 31 2.300437 GCTCCACCTATCATACCAGTCC 59.700 54.545 0.00 0.00 0.00 3.85
31 32 3.850752 CTCCACCTATCATACCAGTCCT 58.149 50.000 0.00 0.00 0.00 3.85
32 33 3.829601 CTCCACCTATCATACCAGTCCTC 59.170 52.174 0.00 0.00 0.00 3.71
33 34 2.558795 CCACCTATCATACCAGTCCTCG 59.441 54.545 0.00 0.00 0.00 4.63
34 35 2.029828 CACCTATCATACCAGTCCTCGC 60.030 54.545 0.00 0.00 0.00 5.03
35 36 2.239400 CCTATCATACCAGTCCTCGCA 58.761 52.381 0.00 0.00 0.00 5.10
36 37 2.828520 CCTATCATACCAGTCCTCGCAT 59.171 50.000 0.00 0.00 0.00 4.73
37 38 3.119316 CCTATCATACCAGTCCTCGCATC 60.119 52.174 0.00 0.00 0.00 3.91
38 39 1.040646 TCATACCAGTCCTCGCATCC 58.959 55.000 0.00 0.00 0.00 3.51
39 40 0.752658 CATACCAGTCCTCGCATCCA 59.247 55.000 0.00 0.00 0.00 3.41
40 41 1.345741 CATACCAGTCCTCGCATCCAT 59.654 52.381 0.00 0.00 0.00 3.41
41 42 1.496060 TACCAGTCCTCGCATCCATT 58.504 50.000 0.00 0.00 0.00 3.16
42 43 0.179000 ACCAGTCCTCGCATCCATTC 59.821 55.000 0.00 0.00 0.00 2.67
43 44 0.467384 CCAGTCCTCGCATCCATTCT 59.533 55.000 0.00 0.00 0.00 2.40
44 45 1.579698 CAGTCCTCGCATCCATTCTG 58.420 55.000 0.00 0.00 0.00 3.02
45 46 0.179062 AGTCCTCGCATCCATTCTGC 60.179 55.000 0.00 0.00 36.26 4.26
50 51 3.113745 GCATCCATTCTGCGGGTG 58.886 61.111 0.00 0.00 37.73 4.61
51 52 2.484062 GCATCCATTCTGCGGGTGG 61.484 63.158 10.60 10.60 35.00 4.61
52 53 2.124151 ATCCATTCTGCGGGTGGC 60.124 61.111 11.69 0.00 43.96 5.01
53 54 3.721370 ATCCATTCTGCGGGTGGCC 62.721 63.158 11.69 0.00 42.61 5.36
54 55 4.431131 CCATTCTGCGGGTGGCCT 62.431 66.667 3.32 0.00 42.61 5.19
55 56 2.825836 CATTCTGCGGGTGGCCTC 60.826 66.667 3.32 0.00 42.61 4.70
56 57 3.329889 ATTCTGCGGGTGGCCTCA 61.330 61.111 3.32 0.00 42.61 3.86
57 58 3.628646 ATTCTGCGGGTGGCCTCAC 62.629 63.158 3.32 0.00 42.61 3.51
65 66 3.782443 GTGGCCTCACCCCTACGG 61.782 72.222 3.32 0.00 37.92 4.02
69 70 3.528370 CCTCACCCCTACGGCGAG 61.528 72.222 16.62 6.64 33.26 5.03
70 71 3.528370 CTCACCCCTACGGCGAGG 61.528 72.222 16.62 15.94 36.23 4.63
71 72 4.371417 TCACCCCTACGGCGAGGT 62.371 66.667 16.62 11.95 34.45 3.85
72 73 3.387947 CACCCCTACGGCGAGGTT 61.388 66.667 16.62 2.54 34.45 3.50
73 74 3.073101 ACCCCTACGGCGAGGTTC 61.073 66.667 16.62 0.00 34.45 3.62
74 75 3.072468 CCCCTACGGCGAGGTTCA 61.072 66.667 16.62 0.00 34.45 3.18
75 76 2.432300 CCCCTACGGCGAGGTTCAT 61.432 63.158 16.62 0.00 34.45 2.57
76 77 1.520666 CCCTACGGCGAGGTTCATT 59.479 57.895 16.62 0.00 34.45 2.57
77 78 0.810031 CCCTACGGCGAGGTTCATTG 60.810 60.000 16.62 0.00 34.45 2.82
78 79 1.429148 CCTACGGCGAGGTTCATTGC 61.429 60.000 16.62 0.00 0.00 3.56
79 80 0.739462 CTACGGCGAGGTTCATTGCA 60.739 55.000 16.62 0.00 0.00 4.08
80 81 0.320858 TACGGCGAGGTTCATTGCAA 60.321 50.000 16.62 0.00 0.00 4.08
81 82 1.135315 CGGCGAGGTTCATTGCAAG 59.865 57.895 0.00 0.00 0.00 4.01
82 83 1.508088 GGCGAGGTTCATTGCAAGG 59.492 57.895 4.34 4.34 0.00 3.61
83 84 1.508088 GCGAGGTTCATTGCAAGGG 59.492 57.895 11.73 2.73 0.00 3.95
84 85 1.244019 GCGAGGTTCATTGCAAGGGT 61.244 55.000 11.73 0.00 0.00 4.34
85 86 0.523072 CGAGGTTCATTGCAAGGGTG 59.477 55.000 11.73 1.32 0.00 4.61
86 87 0.890683 GAGGTTCATTGCAAGGGTGG 59.109 55.000 11.73 0.00 0.00 4.61
87 88 0.482446 AGGTTCATTGCAAGGGTGGA 59.518 50.000 11.73 0.00 0.00 4.02
88 89 0.890683 GGTTCATTGCAAGGGTGGAG 59.109 55.000 11.73 0.00 0.00 3.86
89 90 0.890683 GTTCATTGCAAGGGTGGAGG 59.109 55.000 11.73 0.00 0.00 4.30
90 91 0.482446 TTCATTGCAAGGGTGGAGGT 59.518 50.000 11.73 0.00 0.00 3.85
91 92 0.251297 TCATTGCAAGGGTGGAGGTG 60.251 55.000 11.73 0.00 0.00 4.00
92 93 0.251297 CATTGCAAGGGTGGAGGTGA 60.251 55.000 4.94 0.00 0.00 4.02
93 94 0.038744 ATTGCAAGGGTGGAGGTGAG 59.961 55.000 4.94 0.00 0.00 3.51
94 95 1.352622 TTGCAAGGGTGGAGGTGAGT 61.353 55.000 0.00 0.00 0.00 3.41
95 96 1.352622 TGCAAGGGTGGAGGTGAGTT 61.353 55.000 0.00 0.00 0.00 3.01
96 97 0.690762 GCAAGGGTGGAGGTGAGTTA 59.309 55.000 0.00 0.00 0.00 2.24
97 98 1.339151 GCAAGGGTGGAGGTGAGTTAG 60.339 57.143 0.00 0.00 0.00 2.34
98 99 1.978580 CAAGGGTGGAGGTGAGTTAGT 59.021 52.381 0.00 0.00 0.00 2.24
99 100 1.645710 AGGGTGGAGGTGAGTTAGTG 58.354 55.000 0.00 0.00 0.00 2.74
100 101 0.613777 GGGTGGAGGTGAGTTAGTGG 59.386 60.000 0.00 0.00 0.00 4.00
101 102 0.613777 GGTGGAGGTGAGTTAGTGGG 59.386 60.000 0.00 0.00 0.00 4.61
102 103 1.640917 GTGGAGGTGAGTTAGTGGGA 58.359 55.000 0.00 0.00 0.00 4.37
103 104 1.975680 GTGGAGGTGAGTTAGTGGGAA 59.024 52.381 0.00 0.00 0.00 3.97
104 105 2.370849 GTGGAGGTGAGTTAGTGGGAAA 59.629 50.000 0.00 0.00 0.00 3.13
105 106 2.637872 TGGAGGTGAGTTAGTGGGAAAG 59.362 50.000 0.00 0.00 0.00 2.62
106 107 2.027100 GGAGGTGAGTTAGTGGGAAAGG 60.027 54.545 0.00 0.00 0.00 3.11
107 108 1.985895 AGGTGAGTTAGTGGGAAAGGG 59.014 52.381 0.00 0.00 0.00 3.95
108 109 1.004394 GGTGAGTTAGTGGGAAAGGGG 59.996 57.143 0.00 0.00 0.00 4.79
109 110 1.703513 GTGAGTTAGTGGGAAAGGGGT 59.296 52.381 0.00 0.00 0.00 4.95
110 111 1.982958 TGAGTTAGTGGGAAAGGGGTC 59.017 52.381 0.00 0.00 0.00 4.46
111 112 0.981943 AGTTAGTGGGAAAGGGGTCG 59.018 55.000 0.00 0.00 0.00 4.79
112 113 0.675837 GTTAGTGGGAAAGGGGTCGC 60.676 60.000 0.00 0.00 0.00 5.19
113 114 2.175035 TTAGTGGGAAAGGGGTCGCG 62.175 60.000 0.00 0.00 33.32 5.87
117 118 4.796495 GGAAAGGGGTCGCGGCAT 62.796 66.667 14.93 0.00 0.00 4.40
118 119 3.508840 GAAAGGGGTCGCGGCATG 61.509 66.667 14.93 0.00 0.00 4.06
130 131 3.443045 GGCATGCCGTCACCAAGG 61.443 66.667 23.48 0.00 0.00 3.61
131 132 2.359850 GCATGCCGTCACCAAGGA 60.360 61.111 6.36 0.00 0.00 3.36
132 133 2.690778 GCATGCCGTCACCAAGGAC 61.691 63.158 6.36 0.00 34.42 3.85
138 139 3.144285 GTCACCAAGGACGGTCCA 58.856 61.111 27.87 4.19 39.61 4.02
139 140 1.004918 GTCACCAAGGACGGTCCAG 60.005 63.158 27.87 19.06 39.61 3.86
140 141 2.214216 TCACCAAGGACGGTCCAGG 61.214 63.158 27.87 27.54 39.61 4.45
141 142 2.122547 ACCAAGGACGGTCCAGGT 60.123 61.111 28.35 28.35 40.79 4.00
142 143 2.214920 ACCAAGGACGGTCCAGGTC 61.215 63.158 28.35 5.98 41.46 3.85
143 144 1.913762 CCAAGGACGGTCCAGGTCT 60.914 63.158 27.87 4.96 39.61 3.85
144 145 1.592223 CAAGGACGGTCCAGGTCTC 59.408 63.158 27.87 0.03 39.61 3.36
145 146 1.155390 AAGGACGGTCCAGGTCTCA 59.845 57.895 27.87 0.00 39.61 3.27
146 147 0.252284 AAGGACGGTCCAGGTCTCAT 60.252 55.000 27.87 2.64 39.61 2.90
147 148 0.252284 AGGACGGTCCAGGTCTCATT 60.252 55.000 27.87 1.89 39.61 2.57
148 149 1.006758 AGGACGGTCCAGGTCTCATTA 59.993 52.381 27.87 0.00 39.61 1.90
149 150 1.409427 GGACGGTCCAGGTCTCATTAG 59.591 57.143 22.10 0.00 36.28 1.73
150 151 2.100989 GACGGTCCAGGTCTCATTAGT 58.899 52.381 0.00 0.00 0.00 2.24
151 152 2.099427 GACGGTCCAGGTCTCATTAGTC 59.901 54.545 0.00 0.00 0.00 2.59
152 153 1.065701 CGGTCCAGGTCTCATTAGTCG 59.934 57.143 0.00 0.00 0.00 4.18
153 154 1.202428 GGTCCAGGTCTCATTAGTCGC 60.202 57.143 0.00 0.00 0.00 5.19
154 155 1.751924 GTCCAGGTCTCATTAGTCGCT 59.248 52.381 0.00 0.00 0.00 4.93
155 156 2.166664 GTCCAGGTCTCATTAGTCGCTT 59.833 50.000 0.00 0.00 0.00 4.68
156 157 3.380637 GTCCAGGTCTCATTAGTCGCTTA 59.619 47.826 0.00 0.00 0.00 3.09
157 158 3.632604 TCCAGGTCTCATTAGTCGCTTAG 59.367 47.826 0.00 0.00 0.00 2.18
158 159 3.243569 CCAGGTCTCATTAGTCGCTTAGG 60.244 52.174 0.00 0.00 0.00 2.69
159 160 2.362717 AGGTCTCATTAGTCGCTTAGGC 59.637 50.000 0.00 0.00 0.00 3.93
160 161 2.100916 GGTCTCATTAGTCGCTTAGGCA 59.899 50.000 0.00 0.00 38.60 4.75
161 162 3.376540 GTCTCATTAGTCGCTTAGGCAG 58.623 50.000 0.00 0.00 38.60 4.85
162 163 2.131183 CTCATTAGTCGCTTAGGCAGC 58.869 52.381 0.00 0.00 46.31 5.25
189 190 0.527565 AAAACCATGATGCTGACGGC 59.472 50.000 0.00 0.00 42.22 5.68
190 191 0.322816 AAACCATGATGCTGACGGCT 60.323 50.000 7.96 0.00 42.39 5.52
191 192 0.322816 AACCATGATGCTGACGGCTT 60.323 50.000 7.96 0.22 42.39 4.35
192 193 0.745845 ACCATGATGCTGACGGCTTC 60.746 55.000 13.83 13.83 42.98 3.86
193 194 1.442526 CCATGATGCTGACGGCTTCC 61.443 60.000 17.06 3.54 42.30 3.46
194 195 0.745486 CATGATGCTGACGGCTTCCA 60.745 55.000 17.06 8.52 42.30 3.53
195 196 0.035152 ATGATGCTGACGGCTTCCAA 60.035 50.000 17.06 2.84 42.30 3.53
196 197 0.674581 TGATGCTGACGGCTTCCAAG 60.675 55.000 17.06 0.00 42.30 3.61
197 198 0.391661 GATGCTGACGGCTTCCAAGA 60.392 55.000 7.96 0.00 42.39 3.02
198 199 0.254178 ATGCTGACGGCTTCCAAGAT 59.746 50.000 7.96 0.00 42.39 2.40
199 200 0.674581 TGCTGACGGCTTCCAAGATG 60.675 55.000 7.96 0.00 42.39 2.90
200 201 0.391661 GCTGACGGCTTCCAAGATGA 60.392 55.000 0.00 0.00 38.06 2.92
201 202 1.945819 GCTGACGGCTTCCAAGATGAA 60.946 52.381 0.00 0.00 38.06 2.57
202 203 2.005451 CTGACGGCTTCCAAGATGAAG 58.995 52.381 0.00 0.00 43.71 3.02
203 204 1.339055 TGACGGCTTCCAAGATGAAGG 60.339 52.381 0.00 0.00 41.65 3.46
204 205 0.693049 ACGGCTTCCAAGATGAAGGT 59.307 50.000 3.26 0.00 41.65 3.50
205 206 1.089920 CGGCTTCCAAGATGAAGGTG 58.910 55.000 3.26 0.00 41.65 4.00
206 207 1.467920 GGCTTCCAAGATGAAGGTGG 58.532 55.000 3.26 0.00 41.65 4.61
207 208 1.467920 GCTTCCAAGATGAAGGTGGG 58.532 55.000 3.26 0.00 41.65 4.61
208 209 1.467920 CTTCCAAGATGAAGGTGGGC 58.532 55.000 0.00 0.00 38.45 5.36
209 210 0.039618 TTCCAAGATGAAGGTGGGCC 59.960 55.000 0.00 0.00 32.95 5.80
211 212 0.394899 CCAAGATGAAGGTGGGCCTC 60.395 60.000 4.53 0.00 46.33 4.70
212 213 0.394899 CAAGATGAAGGTGGGCCTCC 60.395 60.000 16.96 16.96 46.33 4.30
213 214 0.846427 AAGATGAAGGTGGGCCTCCA 60.846 55.000 25.55 6.51 46.33 3.86
214 215 0.846427 AGATGAAGGTGGGCCTCCAA 60.846 55.000 25.55 11.67 46.33 3.53
215 216 0.394899 GATGAAGGTGGGCCTCCAAG 60.395 60.000 25.55 0.00 46.33 3.61
216 217 1.142688 ATGAAGGTGGGCCTCCAAGT 61.143 55.000 25.55 10.93 46.33 3.16
217 218 1.360393 TGAAGGTGGGCCTCCAAGTT 61.360 55.000 25.55 11.95 46.33 2.66
218 219 0.895559 GAAGGTGGGCCTCCAAGTTG 60.896 60.000 25.55 0.00 46.33 3.16
219 220 1.360393 AAGGTGGGCCTCCAAGTTGA 61.360 55.000 25.55 0.00 46.33 3.18
220 221 1.152830 GGTGGGCCTCCAAGTTGAA 59.847 57.895 19.59 0.00 46.04 2.69
221 222 0.895559 GGTGGGCCTCCAAGTTGAAG 60.896 60.000 19.59 0.00 46.04 3.02
222 223 0.895559 GTGGGCCTCCAAGTTGAAGG 60.896 60.000 3.25 3.25 46.04 3.46
223 224 1.065410 TGGGCCTCCAAGTTGAAGGA 61.065 55.000 13.14 0.00 40.73 3.36
228 229 2.260844 CTCCAAGTTGAAGGAGCACA 57.739 50.000 3.87 0.00 44.37 4.57
229 230 2.575532 CTCCAAGTTGAAGGAGCACAA 58.424 47.619 3.87 0.00 44.37 3.33
230 231 2.291741 CTCCAAGTTGAAGGAGCACAAC 59.708 50.000 3.87 0.00 44.37 3.32
231 232 2.023673 CCAAGTTGAAGGAGCACAACA 58.976 47.619 3.87 0.00 45.70 3.33
232 233 2.223572 CCAAGTTGAAGGAGCACAACAC 60.224 50.000 3.87 0.00 45.70 3.32
233 234 1.299541 AGTTGAAGGAGCACAACACG 58.700 50.000 0.00 0.00 45.70 4.49
234 235 1.134521 AGTTGAAGGAGCACAACACGA 60.135 47.619 0.00 0.00 45.70 4.35
235 236 1.003866 GTTGAAGGAGCACAACACGAC 60.004 52.381 0.00 0.00 43.66 4.34
236 237 0.176910 TGAAGGAGCACAACACGACA 59.823 50.000 0.00 0.00 0.00 4.35
237 238 1.295792 GAAGGAGCACAACACGACAA 58.704 50.000 0.00 0.00 0.00 3.18
238 239 1.261619 GAAGGAGCACAACACGACAAG 59.738 52.381 0.00 0.00 0.00 3.16
239 240 0.464036 AGGAGCACAACACGACAAGA 59.536 50.000 0.00 0.00 0.00 3.02
240 241 0.582005 GGAGCACAACACGACAAGAC 59.418 55.000 0.00 0.00 0.00 3.01
241 242 0.229753 GAGCACAACACGACAAGACG 59.770 55.000 0.00 0.00 39.31 4.18
242 243 1.367665 GCACAACACGACAAGACGC 60.368 57.895 0.00 0.00 36.70 5.19
243 244 1.084290 CACAACACGACAAGACGCG 60.084 57.895 3.53 3.53 36.70 6.01
244 245 2.235016 ACAACACGACAAGACGCGG 61.235 57.895 12.47 0.00 36.70 6.46
245 246 3.335534 AACACGACAAGACGCGGC 61.336 61.111 12.47 7.86 36.70 6.53
246 247 3.785189 AACACGACAAGACGCGGCT 62.785 57.895 9.84 9.84 36.70 5.52
247 248 3.470567 CACGACAAGACGCGGCTC 61.471 66.667 18.66 0.93 36.70 4.70
248 249 3.973516 ACGACAAGACGCGGCTCA 61.974 61.111 18.66 0.00 36.70 4.26
249 250 3.175240 CGACAAGACGCGGCTCAG 61.175 66.667 18.66 14.79 0.00 3.35
250 251 2.049063 GACAAGACGCGGCTCAGT 60.049 61.111 18.66 18.63 0.00 3.41
251 252 1.664965 GACAAGACGCGGCTCAGTT 60.665 57.895 18.66 0.00 0.00 3.16
252 253 1.891060 GACAAGACGCGGCTCAGTTG 61.891 60.000 18.66 13.40 0.00 3.16
253 254 1.956170 CAAGACGCGGCTCAGTTGT 60.956 57.895 18.66 0.00 0.00 3.32
254 255 0.666274 CAAGACGCGGCTCAGTTGTA 60.666 55.000 18.66 0.00 0.00 2.41
255 256 0.246635 AAGACGCGGCTCAGTTGTAT 59.753 50.000 18.66 0.00 0.00 2.29
256 257 0.246635 AGACGCGGCTCAGTTGTATT 59.753 50.000 9.84 0.00 0.00 1.89
257 258 0.370273 GACGCGGCTCAGTTGTATTG 59.630 55.000 12.47 0.00 0.00 1.90
258 259 0.320421 ACGCGGCTCAGTTGTATTGT 60.320 50.000 12.47 0.00 0.00 2.71
259 260 0.370273 CGCGGCTCAGTTGTATTGTC 59.630 55.000 0.00 0.00 0.00 3.18
260 261 1.438651 GCGGCTCAGTTGTATTGTCA 58.561 50.000 0.00 0.00 0.00 3.58
261 262 1.394917 GCGGCTCAGTTGTATTGTCAG 59.605 52.381 0.00 0.00 0.00 3.51
262 263 2.688507 CGGCTCAGTTGTATTGTCAGT 58.311 47.619 0.00 0.00 0.00 3.41
263 264 2.668457 CGGCTCAGTTGTATTGTCAGTC 59.332 50.000 0.00 0.00 0.00 3.51
264 265 2.668457 GGCTCAGTTGTATTGTCAGTCG 59.332 50.000 0.00 0.00 0.00 4.18
265 266 2.092838 GCTCAGTTGTATTGTCAGTCGC 59.907 50.000 0.00 0.00 0.00 5.19
266 267 2.324860 TCAGTTGTATTGTCAGTCGCG 58.675 47.619 0.00 0.00 0.00 5.87
267 268 2.058798 CAGTTGTATTGTCAGTCGCGT 58.941 47.619 5.77 0.00 0.00 6.01
268 269 2.058798 AGTTGTATTGTCAGTCGCGTG 58.941 47.619 5.77 0.00 0.00 5.34
269 270 1.126113 GTTGTATTGTCAGTCGCGTGG 59.874 52.381 5.77 0.00 0.00 4.94
270 271 1.011968 TGTATTGTCAGTCGCGTGGC 61.012 55.000 5.77 0.00 0.00 5.01
271 272 1.011968 GTATTGTCAGTCGCGTGGCA 61.012 55.000 5.77 2.12 0.00 4.92
272 273 0.735978 TATTGTCAGTCGCGTGGCAG 60.736 55.000 5.77 0.00 32.51 4.85
275 276 4.600576 TCAGTCGCGTGGCAGCAA 62.601 61.111 5.77 0.00 36.85 3.91
276 277 3.648982 CAGTCGCGTGGCAGCAAA 61.649 61.111 5.77 0.00 36.85 3.68
277 278 3.349006 AGTCGCGTGGCAGCAAAG 61.349 61.111 5.77 0.00 36.85 2.77
278 279 3.345808 GTCGCGTGGCAGCAAAGA 61.346 61.111 5.77 0.00 36.85 2.52
279 280 3.345808 TCGCGTGGCAGCAAAGAC 61.346 61.111 5.77 0.00 36.85 3.01
280 281 4.724697 CGCGTGGCAGCAAAGACG 62.725 66.667 0.00 0.00 36.85 4.18
281 282 3.345808 GCGTGGCAGCAAAGACGA 61.346 61.111 9.06 0.00 37.05 4.20
282 283 2.892334 GCGTGGCAGCAAAGACGAA 61.892 57.895 9.06 0.00 37.05 3.85
283 284 1.205064 CGTGGCAGCAAAGACGAAG 59.795 57.895 0.00 0.00 33.64 3.79
284 285 1.221466 CGTGGCAGCAAAGACGAAGA 61.221 55.000 0.00 0.00 33.64 2.87
285 286 0.514691 GTGGCAGCAAAGACGAAGAG 59.485 55.000 0.00 0.00 0.00 2.85
286 287 0.603707 TGGCAGCAAAGACGAAGAGG 60.604 55.000 0.00 0.00 0.00 3.69
287 288 1.499502 GCAGCAAAGACGAAGAGGC 59.500 57.895 0.00 0.00 0.00 4.70
288 289 1.230635 GCAGCAAAGACGAAGAGGCA 61.231 55.000 0.00 0.00 0.00 4.75
289 290 1.229428 CAGCAAAGACGAAGAGGCAA 58.771 50.000 0.00 0.00 0.00 4.52
290 291 1.069636 CAGCAAAGACGAAGAGGCAAC 60.070 52.381 0.00 0.00 0.00 4.17
309 310 7.533289 GGCAACTAGAGGTCTATAAGAGATT 57.467 40.000 0.00 0.00 36.29 2.40
310 311 7.958088 GGCAACTAGAGGTCTATAAGAGATTT 58.042 38.462 0.00 0.00 36.29 2.17
311 312 7.870445 GGCAACTAGAGGTCTATAAGAGATTTG 59.130 40.741 0.00 0.00 36.29 2.32
312 313 8.634444 GCAACTAGAGGTCTATAAGAGATTTGA 58.366 37.037 0.00 0.00 36.29 2.69
318 319 9.707957 AGAGGTCTATAAGAGATTTGAGAAGAA 57.292 33.333 0.00 0.00 36.29 2.52
327 328 8.703378 AAGAGATTTGAGAAGAAAATGAAGGT 57.297 30.769 0.00 0.00 0.00 3.50
328 329 8.108551 AGAGATTTGAGAAGAAAATGAAGGTG 57.891 34.615 0.00 0.00 0.00 4.00
329 330 7.941238 AGAGATTTGAGAAGAAAATGAAGGTGA 59.059 33.333 0.00 0.00 0.00 4.02
330 331 8.108551 AGATTTGAGAAGAAAATGAAGGTGAG 57.891 34.615 0.00 0.00 0.00 3.51
331 332 6.639632 TTTGAGAAGAAAATGAAGGTGAGG 57.360 37.500 0.00 0.00 0.00 3.86
332 333 5.567037 TGAGAAGAAAATGAAGGTGAGGA 57.433 39.130 0.00 0.00 0.00 3.71
333 334 5.555017 TGAGAAGAAAATGAAGGTGAGGAG 58.445 41.667 0.00 0.00 0.00 3.69
334 335 4.916183 AGAAGAAAATGAAGGTGAGGAGG 58.084 43.478 0.00 0.00 0.00 4.30
335 336 4.599241 AGAAGAAAATGAAGGTGAGGAGGA 59.401 41.667 0.00 0.00 0.00 3.71
336 337 5.073691 AGAAGAAAATGAAGGTGAGGAGGAA 59.926 40.000 0.00 0.00 0.00 3.36
337 338 4.916183 AGAAAATGAAGGTGAGGAGGAAG 58.084 43.478 0.00 0.00 0.00 3.46
338 339 4.599241 AGAAAATGAAGGTGAGGAGGAAGA 59.401 41.667 0.00 0.00 0.00 2.87
339 340 5.073691 AGAAAATGAAGGTGAGGAGGAAGAA 59.926 40.000 0.00 0.00 0.00 2.52
340 341 4.566426 AATGAAGGTGAGGAGGAAGAAG 57.434 45.455 0.00 0.00 0.00 2.85
341 342 2.260822 TGAAGGTGAGGAGGAAGAAGG 58.739 52.381 0.00 0.00 0.00 3.46
342 343 2.158158 TGAAGGTGAGGAGGAAGAAGGA 60.158 50.000 0.00 0.00 0.00 3.36
343 344 2.246091 AGGTGAGGAGGAAGAAGGAG 57.754 55.000 0.00 0.00 0.00 3.69
344 345 1.199615 GGTGAGGAGGAAGAAGGAGG 58.800 60.000 0.00 0.00 0.00 4.30
345 346 1.553651 GGTGAGGAGGAAGAAGGAGGT 60.554 57.143 0.00 0.00 0.00 3.85
346 347 1.828595 GTGAGGAGGAAGAAGGAGGTC 59.171 57.143 0.00 0.00 0.00 3.85
347 348 1.107945 GAGGAGGAAGAAGGAGGTCG 58.892 60.000 0.00 0.00 0.00 4.79
348 349 0.705253 AGGAGGAAGAAGGAGGTCGA 59.295 55.000 0.00 0.00 0.00 4.20
349 350 1.107945 GGAGGAAGAAGGAGGTCGAG 58.892 60.000 0.00 0.00 0.00 4.04
350 351 1.107945 GAGGAAGAAGGAGGTCGAGG 58.892 60.000 0.00 0.00 0.00 4.63
351 352 0.973496 AGGAAGAAGGAGGTCGAGGC 60.973 60.000 0.00 0.00 0.00 4.70
352 353 1.518302 GAAGAAGGAGGTCGAGGCC 59.482 63.158 0.00 0.00 0.00 5.19
353 354 0.973496 GAAGAAGGAGGTCGAGGCCT 60.973 60.000 3.86 3.86 42.53 5.19
383 384 3.857157 TGGGACATTATTAGTGGAGCC 57.143 47.619 0.00 0.00 0.00 4.70
384 385 3.393687 TGGGACATTATTAGTGGAGCCT 58.606 45.455 0.00 0.00 0.00 4.58
385 386 3.391296 TGGGACATTATTAGTGGAGCCTC 59.609 47.826 0.00 0.00 0.00 4.70
386 387 3.244596 GGGACATTATTAGTGGAGCCTCC 60.245 52.174 2.98 2.98 36.96 4.30
387 388 3.648545 GGACATTATTAGTGGAGCCTCCT 59.351 47.826 12.94 0.00 37.46 3.69
388 389 4.103311 GGACATTATTAGTGGAGCCTCCTT 59.897 45.833 12.94 2.92 37.46 3.36
389 390 5.307196 GGACATTATTAGTGGAGCCTCCTTA 59.693 44.000 12.94 1.89 37.46 2.69
390 391 6.013293 GGACATTATTAGTGGAGCCTCCTTAT 60.013 42.308 12.94 0.19 37.46 1.73
391 392 7.180408 GGACATTATTAGTGGAGCCTCCTTATA 59.820 40.741 12.94 0.00 37.46 0.98
392 393 8.686739 ACATTATTAGTGGAGCCTCCTTATAT 57.313 34.615 12.94 3.58 37.46 0.86
393 394 8.763601 ACATTATTAGTGGAGCCTCCTTATATC 58.236 37.037 12.94 0.00 37.46 1.63
394 395 8.762645 CATTATTAGTGGAGCCTCCTTATATCA 58.237 37.037 12.94 0.00 37.46 2.15
395 396 8.736097 TTATTAGTGGAGCCTCCTTATATCAA 57.264 34.615 12.94 0.00 37.46 2.57
396 397 7.633018 ATTAGTGGAGCCTCCTTATATCAAA 57.367 36.000 12.94 0.00 37.46 2.69
397 398 5.975988 AGTGGAGCCTCCTTATATCAAAA 57.024 39.130 12.94 0.00 37.46 2.44
398 399 5.934781 AGTGGAGCCTCCTTATATCAAAAG 58.065 41.667 12.94 0.00 37.46 2.27
399 400 5.066593 GTGGAGCCTCCTTATATCAAAAGG 58.933 45.833 12.94 0.00 44.17 3.11
426 427 9.599056 AGAAATATCTCTCATTAGACCATCAGA 57.401 33.333 0.00 0.00 0.00 3.27
430 431 5.851720 TCTCTCATTAGACCATCAGATTGC 58.148 41.667 0.00 0.00 0.00 3.56
431 432 5.364735 TCTCTCATTAGACCATCAGATTGCA 59.635 40.000 0.00 0.00 0.00 4.08
432 433 5.608449 TCTCATTAGACCATCAGATTGCAG 58.392 41.667 0.00 0.00 0.00 4.41
433 434 4.711399 TCATTAGACCATCAGATTGCAGG 58.289 43.478 0.00 0.00 0.00 4.85
434 435 4.164796 TCATTAGACCATCAGATTGCAGGT 59.835 41.667 0.00 0.00 34.76 4.00
435 436 4.574674 TTAGACCATCAGATTGCAGGTT 57.425 40.909 0.00 0.00 31.57 3.50
436 437 3.446442 AGACCATCAGATTGCAGGTTT 57.554 42.857 0.00 0.00 31.57 3.27
437 438 3.087031 AGACCATCAGATTGCAGGTTTG 58.913 45.455 0.00 0.00 31.57 2.93
438 439 3.084039 GACCATCAGATTGCAGGTTTGA 58.916 45.455 0.00 0.00 31.57 2.69
439 440 3.499338 ACCATCAGATTGCAGGTTTGAA 58.501 40.909 0.00 0.00 0.00 2.69
440 441 4.091549 ACCATCAGATTGCAGGTTTGAAT 58.908 39.130 0.00 0.00 0.00 2.57
441 442 4.081862 ACCATCAGATTGCAGGTTTGAATG 60.082 41.667 0.00 0.00 0.00 2.67
442 443 4.430007 CATCAGATTGCAGGTTTGAATGG 58.570 43.478 0.00 0.00 0.00 3.16
443 444 3.765381 TCAGATTGCAGGTTTGAATGGA 58.235 40.909 0.00 0.00 0.00 3.41
444 445 4.346730 TCAGATTGCAGGTTTGAATGGAT 58.653 39.130 0.00 0.00 0.00 3.41
445 446 5.508567 TCAGATTGCAGGTTTGAATGGATA 58.491 37.500 0.00 0.00 0.00 2.59
446 447 5.591472 TCAGATTGCAGGTTTGAATGGATAG 59.409 40.000 0.00 0.00 0.00 2.08
447 448 4.891756 AGATTGCAGGTTTGAATGGATAGG 59.108 41.667 0.00 0.00 0.00 2.57
448 449 4.314522 TTGCAGGTTTGAATGGATAGGA 57.685 40.909 0.00 0.00 0.00 2.94
449 450 4.524802 TGCAGGTTTGAATGGATAGGAT 57.475 40.909 0.00 0.00 0.00 3.24
450 451 4.209538 TGCAGGTTTGAATGGATAGGATG 58.790 43.478 0.00 0.00 0.00 3.51
451 452 4.079844 TGCAGGTTTGAATGGATAGGATGA 60.080 41.667 0.00 0.00 0.00 2.92
452 453 5.075493 GCAGGTTTGAATGGATAGGATGAT 58.925 41.667 0.00 0.00 0.00 2.45
453 454 5.537674 GCAGGTTTGAATGGATAGGATGATT 59.462 40.000 0.00 0.00 0.00 2.57
454 455 6.041296 GCAGGTTTGAATGGATAGGATGATTT 59.959 38.462 0.00 0.00 0.00 2.17
455 456 7.431249 CAGGTTTGAATGGATAGGATGATTTG 58.569 38.462 0.00 0.00 0.00 2.32
456 457 6.552350 AGGTTTGAATGGATAGGATGATTTGG 59.448 38.462 0.00 0.00 0.00 3.28
457 458 6.324770 GGTTTGAATGGATAGGATGATTTGGT 59.675 38.462 0.00 0.00 0.00 3.67
458 459 7.147672 GGTTTGAATGGATAGGATGATTTGGTT 60.148 37.037 0.00 0.00 0.00 3.67
459 460 7.587037 TTGAATGGATAGGATGATTTGGTTC 57.413 36.000 0.00 0.00 0.00 3.62
460 461 6.914665 TGAATGGATAGGATGATTTGGTTCT 58.085 36.000 0.00 0.00 0.00 3.01
461 462 7.000472 TGAATGGATAGGATGATTTGGTTCTC 59.000 38.462 0.00 0.00 0.00 2.87
462 463 5.310409 TGGATAGGATGATTTGGTTCTCC 57.690 43.478 0.00 0.00 0.00 3.71
463 464 4.202357 TGGATAGGATGATTTGGTTCTCCG 60.202 45.833 0.00 0.00 36.30 4.63
464 465 2.044123 AGGATGATTTGGTTCTCCGC 57.956 50.000 0.00 0.00 36.30 5.54
465 466 1.025041 GGATGATTTGGTTCTCCGCC 58.975 55.000 0.00 0.00 36.30 6.13
466 467 1.025041 GATGATTTGGTTCTCCGCCC 58.975 55.000 0.00 0.00 36.30 6.13
467 468 0.625849 ATGATTTGGTTCTCCGCCCT 59.374 50.000 0.00 0.00 36.30 5.19
468 469 0.035439 TGATTTGGTTCTCCGCCCTC 60.035 55.000 0.00 0.00 36.30 4.30
469 470 0.253327 GATTTGGTTCTCCGCCCTCT 59.747 55.000 0.00 0.00 36.30 3.69
470 471 0.253327 ATTTGGTTCTCCGCCCTCTC 59.747 55.000 0.00 0.00 36.30 3.20
471 472 0.836400 TTTGGTTCTCCGCCCTCTCT 60.836 55.000 0.00 0.00 36.30 3.10
472 473 0.836400 TTGGTTCTCCGCCCTCTCTT 60.836 55.000 0.00 0.00 36.30 2.85
473 474 0.836400 TGGTTCTCCGCCCTCTCTTT 60.836 55.000 0.00 0.00 36.30 2.52
474 475 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.000 0.00 0.00 0.00 2.62
475 476 0.899019 GTTCTCCGCCCTCTCTTTCT 59.101 55.000 0.00 0.00 0.00 2.52
476 477 1.276705 GTTCTCCGCCCTCTCTTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
477 478 2.496470 GTTCTCCGCCCTCTCTTTCTTA 59.504 50.000 0.00 0.00 0.00 2.10
478 479 2.816411 TCTCCGCCCTCTCTTTCTTAA 58.184 47.619 0.00 0.00 0.00 1.85
479 480 2.761208 TCTCCGCCCTCTCTTTCTTAAG 59.239 50.000 0.00 0.00 0.00 1.85
480 481 1.831736 TCCGCCCTCTCTTTCTTAAGG 59.168 52.381 1.85 0.00 32.02 2.69
481 482 1.555533 CCGCCCTCTCTTTCTTAAGGT 59.444 52.381 1.85 0.00 32.02 3.50
482 483 2.027100 CCGCCCTCTCTTTCTTAAGGTT 60.027 50.000 1.85 0.00 32.02 3.50
483 484 3.559384 CCGCCCTCTCTTTCTTAAGGTTT 60.559 47.826 1.85 0.00 32.02 3.27
484 485 3.437049 CGCCCTCTCTTTCTTAAGGTTTG 59.563 47.826 1.85 0.00 32.02 2.93
485 486 4.652822 GCCCTCTCTTTCTTAAGGTTTGA 58.347 43.478 1.85 0.00 32.02 2.69
486 487 5.070685 GCCCTCTCTTTCTTAAGGTTTGAA 58.929 41.667 1.85 0.00 32.02 2.69
487 488 5.712446 GCCCTCTCTTTCTTAAGGTTTGAAT 59.288 40.000 1.85 0.00 32.02 2.57
488 489 6.349694 GCCCTCTCTTTCTTAAGGTTTGAATG 60.350 42.308 1.85 0.00 32.02 2.67
489 490 6.151817 CCCTCTCTTTCTTAAGGTTTGAATGG 59.848 42.308 1.85 0.00 32.02 3.16
490 491 6.942576 CCTCTCTTTCTTAAGGTTTGAATGGA 59.057 38.462 1.85 0.00 32.02 3.41
491 492 7.613411 CCTCTCTTTCTTAAGGTTTGAATGGAT 59.387 37.037 1.85 0.00 32.02 3.41
492 493 9.672673 CTCTCTTTCTTAAGGTTTGAATGGATA 57.327 33.333 1.85 0.00 32.02 2.59
493 494 9.672673 TCTCTTTCTTAAGGTTTGAATGGATAG 57.327 33.333 1.85 0.00 32.02 2.08
494 495 8.807948 TCTTTCTTAAGGTTTGAATGGATAGG 57.192 34.615 1.85 0.00 32.02 2.57
495 496 8.611257 TCTTTCTTAAGGTTTGAATGGATAGGA 58.389 33.333 1.85 0.00 32.02 2.94
496 497 9.413734 CTTTCTTAAGGTTTGAATGGATAGGAT 57.586 33.333 1.85 0.00 0.00 3.24
497 498 8.752005 TTCTTAAGGTTTGAATGGATAGGATG 57.248 34.615 1.85 0.00 0.00 3.51
498 499 8.101309 TCTTAAGGTTTGAATGGATAGGATGA 57.899 34.615 1.85 0.00 0.00 2.92
499 500 8.727149 TCTTAAGGTTTGAATGGATAGGATGAT 58.273 33.333 1.85 0.00 0.00 2.45
500 501 9.359653 CTTAAGGTTTGAATGGATAGGATGATT 57.640 33.333 0.00 0.00 0.00 2.57
501 502 9.713684 TTAAGGTTTGAATGGATAGGATGATTT 57.286 29.630 0.00 0.00 0.00 2.17
502 503 7.592885 AGGTTTGAATGGATAGGATGATTTG 57.407 36.000 0.00 0.00 0.00 2.32
503 504 6.552350 AGGTTTGAATGGATAGGATGATTTGG 59.448 38.462 0.00 0.00 0.00 3.28
504 505 6.324770 GGTTTGAATGGATAGGATGATTTGGT 59.675 38.462 0.00 0.00 0.00 3.67
505 506 7.147672 GGTTTGAATGGATAGGATGATTTGGTT 60.148 37.037 0.00 0.00 0.00 3.67
506 507 7.587037 TTGAATGGATAGGATGATTTGGTTC 57.413 36.000 0.00 0.00 0.00 3.62
507 508 6.914665 TGAATGGATAGGATGATTTGGTTCT 58.085 36.000 0.00 0.00 0.00 3.01
508 509 7.000472 TGAATGGATAGGATGATTTGGTTCTC 59.000 38.462 0.00 0.00 0.00 2.87
509 510 5.310409 TGGATAGGATGATTTGGTTCTCC 57.690 43.478 0.00 0.00 0.00 3.71
510 511 4.202357 TGGATAGGATGATTTGGTTCTCCG 60.202 45.833 0.00 0.00 36.30 4.63
511 512 2.044123 AGGATGATTTGGTTCTCCGC 57.956 50.000 0.00 0.00 36.30 5.54
512 513 1.025041 GGATGATTTGGTTCTCCGCC 58.975 55.000 0.00 0.00 36.30 6.13
513 514 1.025041 GATGATTTGGTTCTCCGCCC 58.975 55.000 0.00 0.00 36.30 6.13
514 515 0.625849 ATGATTTGGTTCTCCGCCCT 59.374 50.000 0.00 0.00 36.30 5.19
515 516 0.035439 TGATTTGGTTCTCCGCCCTC 60.035 55.000 0.00 0.00 36.30 4.30
516 517 0.253327 GATTTGGTTCTCCGCCCTCT 59.747 55.000 0.00 0.00 36.30 3.69
517 518 0.253327 ATTTGGTTCTCCGCCCTCTC 59.747 55.000 0.00 0.00 36.30 3.20
518 519 0.836400 TTTGGTTCTCCGCCCTCTCT 60.836 55.000 0.00 0.00 36.30 3.10
519 520 0.836400 TTGGTTCTCCGCCCTCTCTT 60.836 55.000 0.00 0.00 36.30 2.85
520 521 0.836400 TGGTTCTCCGCCCTCTCTTT 60.836 55.000 0.00 0.00 36.30 2.52
521 522 0.108089 GGTTCTCCGCCCTCTCTTTC 60.108 60.000 0.00 0.00 0.00 2.62
522 523 0.899019 GTTCTCCGCCCTCTCTTTCT 59.101 55.000 0.00 0.00 0.00 2.52
523 524 1.276705 GTTCTCCGCCCTCTCTTTCTT 59.723 52.381 0.00 0.00 0.00 2.52
524 525 2.496470 GTTCTCCGCCCTCTCTTTCTTA 59.504 50.000 0.00 0.00 0.00 2.10
525 526 3.033659 TCTCCGCCCTCTCTTTCTTAT 57.966 47.619 0.00 0.00 0.00 1.73
526 527 4.180377 TCTCCGCCCTCTCTTTCTTATA 57.820 45.455 0.00 0.00 0.00 0.98
527 528 4.145807 TCTCCGCCCTCTCTTTCTTATAG 58.854 47.826 0.00 0.00 0.00 1.31
528 529 4.141228 TCTCCGCCCTCTCTTTCTTATAGA 60.141 45.833 0.00 0.00 0.00 1.98
529 530 4.543689 TCCGCCCTCTCTTTCTTATAGAA 58.456 43.478 0.00 0.00 31.28 2.10
530 531 4.341520 TCCGCCCTCTCTTTCTTATAGAAC 59.658 45.833 0.00 0.00 33.26 3.01
531 532 4.501743 CCGCCCTCTCTTTCTTATAGAACC 60.502 50.000 0.00 0.00 33.26 3.62
532 533 4.099573 CGCCCTCTCTTTCTTATAGAACCA 59.900 45.833 0.00 0.00 33.26 3.67
533 534 5.395324 CGCCCTCTCTTTCTTATAGAACCAA 60.395 44.000 0.00 0.00 33.26 3.67
534 535 6.415573 GCCCTCTCTTTCTTATAGAACCAAA 58.584 40.000 0.00 0.00 33.26 3.28
535 536 7.057264 GCCCTCTCTTTCTTATAGAACCAAAT 58.943 38.462 0.00 0.00 33.26 2.32
536 537 7.227711 GCCCTCTCTTTCTTATAGAACCAAATC 59.772 40.741 0.00 0.00 33.26 2.17
593 594 2.823984 TGGTCTACGTCGCTTCAAAAA 58.176 42.857 0.00 0.00 0.00 1.94
625 626 8.589338 ACATGTTTTATGCTTTAATTACCCACA 58.411 29.630 0.00 0.00 0.00 4.17
634 635 6.155221 TGCTTTAATTACCCACAATGCCATTA 59.845 34.615 0.00 0.00 0.00 1.90
1138 1230 4.497473 TTGTCGTTGATGAATGAAACCC 57.503 40.909 0.00 0.00 0.00 4.11
1204 1306 0.110486 TGCCCCTTCTCTTGTCCAAC 59.890 55.000 0.00 0.00 0.00 3.77
1205 1307 0.402121 GCCCCTTCTCTTGTCCAACT 59.598 55.000 0.00 0.00 0.00 3.16
1206 1308 1.611936 GCCCCTTCTCTTGTCCAACTC 60.612 57.143 0.00 0.00 0.00 3.01
1207 1309 1.699634 CCCCTTCTCTTGTCCAACTCA 59.300 52.381 0.00 0.00 0.00 3.41
1208 1310 2.307098 CCCCTTCTCTTGTCCAACTCAT 59.693 50.000 0.00 0.00 0.00 2.90
1209 1311 3.341823 CCCTTCTCTTGTCCAACTCATG 58.658 50.000 0.00 0.00 0.00 3.07
1210 1312 3.008375 CCCTTCTCTTGTCCAACTCATGA 59.992 47.826 0.00 0.00 0.00 3.07
1211 1313 4.324099 CCCTTCTCTTGTCCAACTCATGAT 60.324 45.833 0.00 0.00 0.00 2.45
1212 1314 4.634883 CCTTCTCTTGTCCAACTCATGATG 59.365 45.833 0.00 0.00 0.00 3.07
1213 1315 3.603532 TCTCTTGTCCAACTCATGATGC 58.396 45.455 0.00 0.00 0.00 3.91
1214 1316 2.681848 CTCTTGTCCAACTCATGATGCC 59.318 50.000 0.00 0.00 0.00 4.40
1215 1317 2.306805 TCTTGTCCAACTCATGATGCCT 59.693 45.455 0.00 0.00 0.00 4.75
1216 1318 2.885135 TGTCCAACTCATGATGCCTT 57.115 45.000 0.00 0.00 0.00 4.35
1243 1345 2.563039 TTCCTTGTAGTAGGAGGGGG 57.437 55.000 0.00 0.00 44.82 5.40
1293 1395 3.366781 GGAGCAAGAGCAACAGGAAATTC 60.367 47.826 0.00 0.00 45.49 2.17
1749 1864 3.448686 CCGTCCTTCTATCATGACACAC 58.551 50.000 0.00 0.00 0.00 3.82
1784 1899 4.785301 ACTTGCACATGCTGTAGGAATAT 58.215 39.130 5.31 0.00 42.66 1.28
1785 1900 5.928976 ACTTGCACATGCTGTAGGAATATA 58.071 37.500 5.31 0.00 42.66 0.86
1786 1901 5.994054 ACTTGCACATGCTGTAGGAATATAG 59.006 40.000 5.31 0.00 42.66 1.31
1787 1902 5.806654 TGCACATGCTGTAGGAATATAGA 57.193 39.130 5.31 0.00 42.66 1.98
1788 1903 5.787380 TGCACATGCTGTAGGAATATAGAG 58.213 41.667 5.31 0.00 42.66 2.43
1789 1904 5.305386 TGCACATGCTGTAGGAATATAGAGT 59.695 40.000 5.31 0.00 42.66 3.24
1849 1964 9.305925 GATGTTCTCAATGGTATCCAAAATTTC 57.694 33.333 0.00 0.00 36.95 2.17
2018 2133 9.835389 TTCAGATTTTTCAAATGAATTTCACCT 57.165 25.926 0.15 0.00 33.54 4.00
2276 2398 6.061441 TGAAATGTATTGTCCAGTGTCTTGT 58.939 36.000 0.00 0.00 0.00 3.16
2286 2408 5.221621 TGTCCAGTGTCTTGTGATGTCATTA 60.222 40.000 0.00 0.00 0.00 1.90
2460 2582 5.395682 TTTTTAGCTTGCTCAGATTGCAT 57.604 34.783 0.00 0.00 40.34 3.96
2598 2722 9.533253 ACAAATGCTTATTTATAAACAGATGGC 57.467 29.630 0.00 1.18 0.00 4.40
2837 2966 0.471780 TCCCAGTCTCACTGCCTTCA 60.472 55.000 0.00 0.00 44.63 3.02
2889 3018 6.899075 ACTATGTGTGTGGTTAGGGTATAGAA 59.101 38.462 0.00 0.00 0.00 2.10
2929 3097 6.613699 TCCATGCTAATGTTCCATATTCCTT 58.386 36.000 0.00 0.00 31.27 3.36
3105 3275 6.220201 TCGTCAACAGATGAAGTAATCAACA 58.780 36.000 0.00 0.00 42.54 3.33
3340 3563 3.691049 TTTGACTTGTTTTCTGCTCCG 57.309 42.857 0.00 0.00 0.00 4.63
3345 3568 0.179067 TTGTTTTCTGCTCCGACCGT 60.179 50.000 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.384989 ATAGGTGGAGCTCGACGGTG 61.385 60.000 20.78 0.00 0.00 4.94
1 2 1.076923 ATAGGTGGAGCTCGACGGT 60.077 57.895 20.78 13.72 0.00 4.83
3 4 0.955178 ATGATAGGTGGAGCTCGACG 59.045 55.000 20.78 0.00 0.00 5.12
4 5 2.229302 GGTATGATAGGTGGAGCTCGAC 59.771 54.545 19.63 19.63 0.00 4.20
6 7 2.230025 CTGGTATGATAGGTGGAGCTCG 59.770 54.545 7.83 0.00 0.00 5.03
7 8 3.235200 ACTGGTATGATAGGTGGAGCTC 58.765 50.000 4.71 4.71 0.00 4.09
8 9 3.235200 GACTGGTATGATAGGTGGAGCT 58.765 50.000 0.00 0.00 0.00 4.09
9 10 2.300437 GGACTGGTATGATAGGTGGAGC 59.700 54.545 0.00 0.00 0.00 4.70
10 11 3.829601 GAGGACTGGTATGATAGGTGGAG 59.170 52.174 0.00 0.00 0.00 3.86
11 12 3.750922 CGAGGACTGGTATGATAGGTGGA 60.751 52.174 0.00 0.00 0.00 4.02
12 13 2.558795 CGAGGACTGGTATGATAGGTGG 59.441 54.545 0.00 0.00 0.00 4.61
13 14 2.029828 GCGAGGACTGGTATGATAGGTG 60.030 54.545 0.00 0.00 0.00 4.00
14 15 2.240279 GCGAGGACTGGTATGATAGGT 58.760 52.381 0.00 0.00 0.00 3.08
15 16 2.239400 TGCGAGGACTGGTATGATAGG 58.761 52.381 0.00 0.00 0.00 2.57
16 17 3.119316 GGATGCGAGGACTGGTATGATAG 60.119 52.174 0.00 0.00 0.00 2.08
17 18 2.826128 GGATGCGAGGACTGGTATGATA 59.174 50.000 0.00 0.00 0.00 2.15
18 19 1.620819 GGATGCGAGGACTGGTATGAT 59.379 52.381 0.00 0.00 0.00 2.45
19 20 1.040646 GGATGCGAGGACTGGTATGA 58.959 55.000 0.00 0.00 0.00 2.15
20 21 0.752658 TGGATGCGAGGACTGGTATG 59.247 55.000 0.00 0.00 0.00 2.39
21 22 1.722034 ATGGATGCGAGGACTGGTAT 58.278 50.000 0.00 0.00 0.00 2.73
22 23 1.412710 GAATGGATGCGAGGACTGGTA 59.587 52.381 0.00 0.00 0.00 3.25
23 24 0.179000 GAATGGATGCGAGGACTGGT 59.821 55.000 0.00 0.00 0.00 4.00
24 25 0.467384 AGAATGGATGCGAGGACTGG 59.533 55.000 0.00 0.00 0.00 4.00
25 26 1.579698 CAGAATGGATGCGAGGACTG 58.420 55.000 0.00 0.00 0.00 3.51
26 27 0.179062 GCAGAATGGATGCGAGGACT 60.179 55.000 0.00 0.00 35.86 3.85
27 28 2.315246 GCAGAATGGATGCGAGGAC 58.685 57.895 0.00 0.00 35.86 3.85
28 29 4.863707 GCAGAATGGATGCGAGGA 57.136 55.556 0.00 0.00 35.86 3.71
33 34 2.484062 CCACCCGCAGAATGGATGC 61.484 63.158 0.00 0.00 40.35 3.91
34 35 2.484062 GCCACCCGCAGAATGGATG 61.484 63.158 0.00 0.00 34.79 3.51
35 36 2.124151 GCCACCCGCAGAATGGAT 60.124 61.111 0.00 0.00 34.79 3.41
36 37 4.424711 GGCCACCCGCAGAATGGA 62.425 66.667 0.00 0.00 40.31 3.41
37 38 4.431131 AGGCCACCCGCAGAATGG 62.431 66.667 5.01 0.00 40.31 3.16
38 39 2.825836 GAGGCCACCCGCAGAATG 60.826 66.667 5.01 0.00 40.31 2.67
39 40 3.329889 TGAGGCCACCCGCAGAAT 61.330 61.111 5.01 0.00 40.31 2.40
40 41 4.329545 GTGAGGCCACCCGCAGAA 62.330 66.667 5.01 0.00 41.83 3.02
60 61 0.739462 TGCAATGAACCTCGCCGTAG 60.739 55.000 0.00 0.00 0.00 3.51
61 62 0.320858 TTGCAATGAACCTCGCCGTA 60.321 50.000 0.00 0.00 0.00 4.02
62 63 1.577328 CTTGCAATGAACCTCGCCGT 61.577 55.000 0.00 0.00 0.00 5.68
63 64 1.135315 CTTGCAATGAACCTCGCCG 59.865 57.895 0.00 0.00 0.00 6.46
64 65 1.508088 CCTTGCAATGAACCTCGCC 59.492 57.895 0.00 0.00 0.00 5.54
65 66 1.244019 ACCCTTGCAATGAACCTCGC 61.244 55.000 0.00 0.00 0.00 5.03
66 67 0.523072 CACCCTTGCAATGAACCTCG 59.477 55.000 0.00 0.00 0.00 4.63
67 68 0.890683 CCACCCTTGCAATGAACCTC 59.109 55.000 0.00 0.00 0.00 3.85
68 69 0.482446 TCCACCCTTGCAATGAACCT 59.518 50.000 0.00 0.00 0.00 3.50
69 70 0.890683 CTCCACCCTTGCAATGAACC 59.109 55.000 0.00 0.00 0.00 3.62
70 71 0.890683 CCTCCACCCTTGCAATGAAC 59.109 55.000 0.00 0.00 0.00 3.18
71 72 0.482446 ACCTCCACCCTTGCAATGAA 59.518 50.000 0.00 0.00 0.00 2.57
72 73 0.251297 CACCTCCACCCTTGCAATGA 60.251 55.000 0.00 0.00 0.00 2.57
73 74 0.251297 TCACCTCCACCCTTGCAATG 60.251 55.000 0.00 0.00 0.00 2.82
74 75 0.038744 CTCACCTCCACCCTTGCAAT 59.961 55.000 0.00 0.00 0.00 3.56
75 76 1.352622 ACTCACCTCCACCCTTGCAA 61.353 55.000 0.00 0.00 0.00 4.08
76 77 1.352622 AACTCACCTCCACCCTTGCA 61.353 55.000 0.00 0.00 0.00 4.08
77 78 0.690762 TAACTCACCTCCACCCTTGC 59.309 55.000 0.00 0.00 0.00 4.01
78 79 1.978580 ACTAACTCACCTCCACCCTTG 59.021 52.381 0.00 0.00 0.00 3.61
79 80 1.978580 CACTAACTCACCTCCACCCTT 59.021 52.381 0.00 0.00 0.00 3.95
80 81 1.645710 CACTAACTCACCTCCACCCT 58.354 55.000 0.00 0.00 0.00 4.34
81 82 0.613777 CCACTAACTCACCTCCACCC 59.386 60.000 0.00 0.00 0.00 4.61
82 83 0.613777 CCCACTAACTCACCTCCACC 59.386 60.000 0.00 0.00 0.00 4.61
83 84 1.640917 TCCCACTAACTCACCTCCAC 58.359 55.000 0.00 0.00 0.00 4.02
84 85 2.409064 TTCCCACTAACTCACCTCCA 57.591 50.000 0.00 0.00 0.00 3.86
85 86 2.027100 CCTTTCCCACTAACTCACCTCC 60.027 54.545 0.00 0.00 0.00 4.30
86 87 2.027100 CCCTTTCCCACTAACTCACCTC 60.027 54.545 0.00 0.00 0.00 3.85
87 88 1.985895 CCCTTTCCCACTAACTCACCT 59.014 52.381 0.00 0.00 0.00 4.00
88 89 1.004394 CCCCTTTCCCACTAACTCACC 59.996 57.143 0.00 0.00 0.00 4.02
89 90 1.703513 ACCCCTTTCCCACTAACTCAC 59.296 52.381 0.00 0.00 0.00 3.51
90 91 1.982958 GACCCCTTTCCCACTAACTCA 59.017 52.381 0.00 0.00 0.00 3.41
91 92 1.066358 CGACCCCTTTCCCACTAACTC 60.066 57.143 0.00 0.00 0.00 3.01
92 93 0.981943 CGACCCCTTTCCCACTAACT 59.018 55.000 0.00 0.00 0.00 2.24
93 94 0.675837 GCGACCCCTTTCCCACTAAC 60.676 60.000 0.00 0.00 0.00 2.34
94 95 1.681076 GCGACCCCTTTCCCACTAA 59.319 57.895 0.00 0.00 0.00 2.24
95 96 2.652095 CGCGACCCCTTTCCCACTA 61.652 63.158 0.00 0.00 0.00 2.74
96 97 4.016706 CGCGACCCCTTTCCCACT 62.017 66.667 0.00 0.00 0.00 4.00
100 101 4.796495 ATGCCGCGACCCCTTTCC 62.796 66.667 8.23 0.00 0.00 3.13
101 102 3.508840 CATGCCGCGACCCCTTTC 61.509 66.667 8.23 0.00 0.00 2.62
113 114 3.443045 CCTTGGTGACGGCATGCC 61.443 66.667 27.67 27.67 0.00 4.40
114 115 2.359850 TCCTTGGTGACGGCATGC 60.360 61.111 9.90 9.90 0.00 4.06
115 116 3.578456 GTCCTTGGTGACGGCATG 58.422 61.111 0.00 0.00 0.00 4.06
121 122 1.004918 CTGGACCGTCCTTGGTGAC 60.005 63.158 18.54 0.00 44.01 3.67
122 123 2.214216 CCTGGACCGTCCTTGGTGA 61.214 63.158 18.54 0.00 44.01 4.02
123 124 2.347490 CCTGGACCGTCCTTGGTG 59.653 66.667 18.54 4.12 44.01 4.17
125 126 1.889530 GAGACCTGGACCGTCCTTGG 61.890 65.000 18.54 20.10 37.46 3.61
126 127 1.185618 TGAGACCTGGACCGTCCTTG 61.186 60.000 18.54 11.48 37.46 3.61
127 128 0.252284 ATGAGACCTGGACCGTCCTT 60.252 55.000 18.54 3.02 37.46 3.36
128 129 0.252284 AATGAGACCTGGACCGTCCT 60.252 55.000 18.54 0.00 37.46 3.85
129 130 1.409427 CTAATGAGACCTGGACCGTCC 59.591 57.143 10.96 10.96 36.96 4.79
130 131 2.099427 GACTAATGAGACCTGGACCGTC 59.901 54.545 0.00 0.00 0.00 4.79
131 132 2.100989 GACTAATGAGACCTGGACCGT 58.899 52.381 0.00 0.00 0.00 4.83
132 133 1.065701 CGACTAATGAGACCTGGACCG 59.934 57.143 0.00 0.00 0.00 4.79
133 134 1.202428 GCGACTAATGAGACCTGGACC 60.202 57.143 0.00 0.00 0.00 4.46
134 135 1.751924 AGCGACTAATGAGACCTGGAC 59.248 52.381 0.00 0.00 0.00 4.02
135 136 2.145397 AGCGACTAATGAGACCTGGA 57.855 50.000 0.00 0.00 0.00 3.86
136 137 2.969628 AAGCGACTAATGAGACCTGG 57.030 50.000 0.00 0.00 0.00 4.45
137 138 3.797184 GCCTAAGCGACTAATGAGACCTG 60.797 52.174 0.00 0.00 0.00 4.00
138 139 2.362717 GCCTAAGCGACTAATGAGACCT 59.637 50.000 0.00 0.00 0.00 3.85
139 140 2.100916 TGCCTAAGCGACTAATGAGACC 59.899 50.000 0.00 0.00 44.31 3.85
140 141 3.376540 CTGCCTAAGCGACTAATGAGAC 58.623 50.000 0.00 0.00 44.31 3.36
141 142 2.223829 GCTGCCTAAGCGACTAATGAGA 60.224 50.000 0.00 0.00 43.45 3.27
142 143 2.131183 GCTGCCTAAGCGACTAATGAG 58.869 52.381 0.00 0.00 43.45 2.90
143 144 2.225068 GCTGCCTAAGCGACTAATGA 57.775 50.000 0.00 0.00 43.45 2.57
169 170 1.067635 GCCGTCAGCATCATGGTTTTT 60.068 47.619 0.00 0.00 42.97 1.94
170 171 0.527565 GCCGTCAGCATCATGGTTTT 59.472 50.000 0.00 0.00 42.97 2.43
171 172 2.183409 GCCGTCAGCATCATGGTTT 58.817 52.632 0.00 0.00 42.97 3.27
172 173 3.909662 GCCGTCAGCATCATGGTT 58.090 55.556 0.00 0.00 42.97 3.67
181 182 0.391661 TCATCTTGGAAGCCGTCAGC 60.392 55.000 0.00 0.00 44.25 4.26
182 183 2.005451 CTTCATCTTGGAAGCCGTCAG 58.995 52.381 0.00 0.00 38.01 3.51
183 184 1.339055 CCTTCATCTTGGAAGCCGTCA 60.339 52.381 0.00 0.00 42.31 4.35
184 185 1.339151 ACCTTCATCTTGGAAGCCGTC 60.339 52.381 0.00 0.00 42.31 4.79
185 186 0.693049 ACCTTCATCTTGGAAGCCGT 59.307 50.000 0.00 0.00 42.31 5.68
186 187 1.089920 CACCTTCATCTTGGAAGCCG 58.910 55.000 0.00 0.00 42.31 5.52
187 188 1.467920 CCACCTTCATCTTGGAAGCC 58.532 55.000 0.00 0.00 42.31 4.35
188 189 1.467920 CCCACCTTCATCTTGGAAGC 58.532 55.000 0.00 0.00 42.31 3.86
189 190 1.467920 GCCCACCTTCATCTTGGAAG 58.532 55.000 0.00 0.00 43.09 3.46
190 191 0.039618 GGCCCACCTTCATCTTGGAA 59.960 55.000 0.00 0.00 31.39 3.53
191 192 1.691219 GGCCCACCTTCATCTTGGA 59.309 57.895 0.00 0.00 31.39 3.53
192 193 4.344237 GGCCCACCTTCATCTTGG 57.656 61.111 0.00 0.00 0.00 3.61
202 203 0.895559 CTTCAACTTGGAGGCCCACC 60.896 60.000 0.00 3.98 43.41 4.61
203 204 0.895559 CCTTCAACTTGGAGGCCCAC 60.896 60.000 2.92 0.00 43.41 4.61
204 205 1.065410 TCCTTCAACTTGGAGGCCCA 61.065 55.000 11.04 0.00 41.64 5.36
205 206 0.322906 CTCCTTCAACTTGGAGGCCC 60.323 60.000 11.04 0.00 44.44 5.80
206 207 3.256281 CTCCTTCAACTTGGAGGCC 57.744 57.895 11.04 0.00 44.44 5.19
210 211 2.297701 GTTGTGCTCCTTCAACTTGGA 58.702 47.619 0.00 0.00 40.20 3.53
211 212 2.023673 TGTTGTGCTCCTTCAACTTGG 58.976 47.619 8.96 0.00 42.71 3.61
212 213 2.539547 CGTGTTGTGCTCCTTCAACTTG 60.540 50.000 8.96 0.00 42.71 3.16
213 214 1.670811 CGTGTTGTGCTCCTTCAACTT 59.329 47.619 8.96 0.00 42.71 2.66
214 215 1.134521 TCGTGTTGTGCTCCTTCAACT 60.135 47.619 8.96 0.00 42.71 3.16
215 216 1.003866 GTCGTGTTGTGCTCCTTCAAC 60.004 52.381 0.00 0.00 42.62 3.18
216 217 1.295792 GTCGTGTTGTGCTCCTTCAA 58.704 50.000 0.00 0.00 0.00 2.69
217 218 0.176910 TGTCGTGTTGTGCTCCTTCA 59.823 50.000 0.00 0.00 0.00 3.02
218 219 1.261619 CTTGTCGTGTTGTGCTCCTTC 59.738 52.381 0.00 0.00 0.00 3.46
219 220 1.134521 TCTTGTCGTGTTGTGCTCCTT 60.135 47.619 0.00 0.00 0.00 3.36
220 221 0.464036 TCTTGTCGTGTTGTGCTCCT 59.536 50.000 0.00 0.00 0.00 3.69
221 222 0.582005 GTCTTGTCGTGTTGTGCTCC 59.418 55.000 0.00 0.00 0.00 4.70
222 223 0.229753 CGTCTTGTCGTGTTGTGCTC 59.770 55.000 0.00 0.00 0.00 4.26
223 224 1.762222 GCGTCTTGTCGTGTTGTGCT 61.762 55.000 0.00 0.00 0.00 4.40
224 225 1.367665 GCGTCTTGTCGTGTTGTGC 60.368 57.895 0.00 0.00 0.00 4.57
225 226 1.084290 CGCGTCTTGTCGTGTTGTG 60.084 57.895 0.00 0.00 36.71 3.33
226 227 2.235016 CCGCGTCTTGTCGTGTTGT 61.235 57.895 4.92 0.00 39.28 3.32
227 228 2.544359 CCGCGTCTTGTCGTGTTG 59.456 61.111 4.92 0.00 39.28 3.33
228 229 3.335534 GCCGCGTCTTGTCGTGTT 61.336 61.111 4.92 0.00 39.28 3.32
229 230 4.280494 AGCCGCGTCTTGTCGTGT 62.280 61.111 4.92 0.00 39.28 4.49
230 231 3.470567 GAGCCGCGTCTTGTCGTG 61.471 66.667 4.92 0.00 40.38 4.35
231 232 3.898627 CTGAGCCGCGTCTTGTCGT 62.899 63.158 4.92 0.00 0.00 4.34
232 233 3.175240 CTGAGCCGCGTCTTGTCG 61.175 66.667 4.92 0.00 0.00 4.35
233 234 1.664965 AACTGAGCCGCGTCTTGTC 60.665 57.895 4.92 0.00 0.00 3.18
234 235 1.956170 CAACTGAGCCGCGTCTTGT 60.956 57.895 4.92 0.00 0.00 3.16
235 236 0.666274 TACAACTGAGCCGCGTCTTG 60.666 55.000 4.92 1.37 0.00 3.02
236 237 0.246635 ATACAACTGAGCCGCGTCTT 59.753 50.000 4.92 0.00 0.00 3.01
237 238 0.246635 AATACAACTGAGCCGCGTCT 59.753 50.000 4.92 0.00 0.00 4.18
238 239 0.370273 CAATACAACTGAGCCGCGTC 59.630 55.000 4.92 0.00 0.00 5.19
239 240 0.320421 ACAATACAACTGAGCCGCGT 60.320 50.000 4.92 0.00 0.00 6.01
240 241 0.370273 GACAATACAACTGAGCCGCG 59.630 55.000 0.00 0.00 0.00 6.46
241 242 1.394917 CTGACAATACAACTGAGCCGC 59.605 52.381 0.00 0.00 0.00 6.53
242 243 2.668457 GACTGACAATACAACTGAGCCG 59.332 50.000 0.00 0.00 0.00 5.52
243 244 2.668457 CGACTGACAATACAACTGAGCC 59.332 50.000 0.00 0.00 0.00 4.70
244 245 2.092838 GCGACTGACAATACAACTGAGC 59.907 50.000 0.00 0.00 0.00 4.26
245 246 2.342651 CGCGACTGACAATACAACTGAG 59.657 50.000 0.00 0.00 0.00 3.35
246 247 2.287970 ACGCGACTGACAATACAACTGA 60.288 45.455 15.93 0.00 0.00 3.41
247 248 2.058798 ACGCGACTGACAATACAACTG 58.941 47.619 15.93 0.00 0.00 3.16
248 249 2.058798 CACGCGACTGACAATACAACT 58.941 47.619 15.93 0.00 0.00 3.16
249 250 1.126113 CCACGCGACTGACAATACAAC 59.874 52.381 15.93 0.00 0.00 3.32
250 251 1.424403 CCACGCGACTGACAATACAA 58.576 50.000 15.93 0.00 0.00 2.41
251 252 1.011968 GCCACGCGACTGACAATACA 61.012 55.000 15.93 0.00 0.00 2.29
252 253 1.011968 TGCCACGCGACTGACAATAC 61.012 55.000 15.93 0.00 0.00 1.89
253 254 0.735978 CTGCCACGCGACTGACAATA 60.736 55.000 15.93 0.00 0.00 1.90
254 255 2.029288 CTGCCACGCGACTGACAAT 61.029 57.895 15.93 0.00 0.00 2.71
255 256 2.661537 CTGCCACGCGACTGACAA 60.662 61.111 15.93 0.00 0.00 3.18
258 259 4.600576 TTGCTGCCACGCGACTGA 62.601 61.111 15.93 0.00 0.00 3.41
259 260 3.584250 CTTTGCTGCCACGCGACTG 62.584 63.158 15.93 0.00 0.00 3.51
260 261 3.349006 CTTTGCTGCCACGCGACT 61.349 61.111 15.93 0.00 0.00 4.18
261 262 3.345808 TCTTTGCTGCCACGCGAC 61.346 61.111 15.93 1.62 0.00 5.19
262 263 3.345808 GTCTTTGCTGCCACGCGA 61.346 61.111 15.93 0.00 0.00 5.87
263 264 4.724697 CGTCTTTGCTGCCACGCG 62.725 66.667 3.53 3.53 0.00 6.01
264 265 2.770587 CTTCGTCTTTGCTGCCACGC 62.771 60.000 0.00 0.00 32.21 5.34
265 266 1.205064 CTTCGTCTTTGCTGCCACG 59.795 57.895 0.00 0.61 0.00 4.94
266 267 0.514691 CTCTTCGTCTTTGCTGCCAC 59.485 55.000 0.00 0.00 0.00 5.01
267 268 0.603707 CCTCTTCGTCTTTGCTGCCA 60.604 55.000 0.00 0.00 0.00 4.92
268 269 1.916697 GCCTCTTCGTCTTTGCTGCC 61.917 60.000 0.00 0.00 0.00 4.85
269 270 1.230635 TGCCTCTTCGTCTTTGCTGC 61.231 55.000 0.00 0.00 0.00 5.25
270 271 1.069636 GTTGCCTCTTCGTCTTTGCTG 60.070 52.381 0.00 0.00 0.00 4.41
271 272 1.202698 AGTTGCCTCTTCGTCTTTGCT 60.203 47.619 0.00 0.00 0.00 3.91
272 273 1.230324 AGTTGCCTCTTCGTCTTTGC 58.770 50.000 0.00 0.00 0.00 3.68
273 274 3.914312 TCTAGTTGCCTCTTCGTCTTTG 58.086 45.455 0.00 0.00 0.00 2.77
274 275 3.056465 CCTCTAGTTGCCTCTTCGTCTTT 60.056 47.826 0.00 0.00 0.00 2.52
275 276 2.494073 CCTCTAGTTGCCTCTTCGTCTT 59.506 50.000 0.00 0.00 0.00 3.01
276 277 2.096248 CCTCTAGTTGCCTCTTCGTCT 58.904 52.381 0.00 0.00 0.00 4.18
277 278 1.819903 ACCTCTAGTTGCCTCTTCGTC 59.180 52.381 0.00 0.00 0.00 4.20
278 279 1.819903 GACCTCTAGTTGCCTCTTCGT 59.180 52.381 0.00 0.00 0.00 3.85
279 280 2.096248 AGACCTCTAGTTGCCTCTTCG 58.904 52.381 0.00 0.00 0.00 3.79
280 281 6.773685 TCTTATAGACCTCTAGTTGCCTCTTC 59.226 42.308 0.00 0.00 0.00 2.87
281 282 6.674573 TCTTATAGACCTCTAGTTGCCTCTT 58.325 40.000 0.00 0.00 0.00 2.85
282 283 6.102027 TCTCTTATAGACCTCTAGTTGCCTCT 59.898 42.308 0.00 0.00 0.00 3.69
283 284 6.300703 TCTCTTATAGACCTCTAGTTGCCTC 58.699 44.000 0.00 0.00 0.00 4.70
284 285 6.268855 TCTCTTATAGACCTCTAGTTGCCT 57.731 41.667 0.00 0.00 0.00 4.75
285 286 7.533289 AATCTCTTATAGACCTCTAGTTGCC 57.467 40.000 0.00 0.00 36.93 4.52
286 287 8.634444 TCAAATCTCTTATAGACCTCTAGTTGC 58.366 37.037 0.00 0.00 36.93 4.17
292 293 9.707957 TTCTTCTCAAATCTCTTATAGACCTCT 57.292 33.333 0.00 0.00 36.93 3.69
301 302 9.799106 ACCTTCATTTTCTTCTCAAATCTCTTA 57.201 29.630 0.00 0.00 0.00 2.10
302 303 8.574737 CACCTTCATTTTCTTCTCAAATCTCTT 58.425 33.333 0.00 0.00 0.00 2.85
303 304 7.941238 TCACCTTCATTTTCTTCTCAAATCTCT 59.059 33.333 0.00 0.00 0.00 3.10
304 305 8.103948 TCACCTTCATTTTCTTCTCAAATCTC 57.896 34.615 0.00 0.00 0.00 2.75
305 306 7.176340 CCTCACCTTCATTTTCTTCTCAAATCT 59.824 37.037 0.00 0.00 0.00 2.40
306 307 7.175641 TCCTCACCTTCATTTTCTTCTCAAATC 59.824 37.037 0.00 0.00 0.00 2.17
307 308 7.006509 TCCTCACCTTCATTTTCTTCTCAAAT 58.993 34.615 0.00 0.00 0.00 2.32
308 309 6.364701 TCCTCACCTTCATTTTCTTCTCAAA 58.635 36.000 0.00 0.00 0.00 2.69
309 310 5.940617 TCCTCACCTTCATTTTCTTCTCAA 58.059 37.500 0.00 0.00 0.00 3.02
310 311 5.513788 CCTCCTCACCTTCATTTTCTTCTCA 60.514 44.000 0.00 0.00 0.00 3.27
311 312 4.940654 CCTCCTCACCTTCATTTTCTTCTC 59.059 45.833 0.00 0.00 0.00 2.87
312 313 4.599241 TCCTCCTCACCTTCATTTTCTTCT 59.401 41.667 0.00 0.00 0.00 2.85
313 314 4.911390 TCCTCCTCACCTTCATTTTCTTC 58.089 43.478 0.00 0.00 0.00 2.87
314 315 5.073691 TCTTCCTCCTCACCTTCATTTTCTT 59.926 40.000 0.00 0.00 0.00 2.52
315 316 4.599241 TCTTCCTCCTCACCTTCATTTTCT 59.401 41.667 0.00 0.00 0.00 2.52
316 317 4.911390 TCTTCCTCCTCACCTTCATTTTC 58.089 43.478 0.00 0.00 0.00 2.29
317 318 5.320277 CTTCTTCCTCCTCACCTTCATTTT 58.680 41.667 0.00 0.00 0.00 1.82
318 319 4.263683 CCTTCTTCCTCCTCACCTTCATTT 60.264 45.833 0.00 0.00 0.00 2.32
319 320 3.265479 CCTTCTTCCTCCTCACCTTCATT 59.735 47.826 0.00 0.00 0.00 2.57
320 321 2.843113 CCTTCTTCCTCCTCACCTTCAT 59.157 50.000 0.00 0.00 0.00 2.57
321 322 2.158158 TCCTTCTTCCTCCTCACCTTCA 60.158 50.000 0.00 0.00 0.00 3.02
322 323 2.499693 CTCCTTCTTCCTCCTCACCTTC 59.500 54.545 0.00 0.00 0.00 3.46
323 324 2.545810 CTCCTTCTTCCTCCTCACCTT 58.454 52.381 0.00 0.00 0.00 3.50
324 325 1.273552 CCTCCTTCTTCCTCCTCACCT 60.274 57.143 0.00 0.00 0.00 4.00
325 326 1.199615 CCTCCTTCTTCCTCCTCACC 58.800 60.000 0.00 0.00 0.00 4.02
326 327 1.828595 GACCTCCTTCTTCCTCCTCAC 59.171 57.143 0.00 0.00 0.00 3.51
327 328 1.617263 CGACCTCCTTCTTCCTCCTCA 60.617 57.143 0.00 0.00 0.00 3.86
328 329 1.107945 CGACCTCCTTCTTCCTCCTC 58.892 60.000 0.00 0.00 0.00 3.71
329 330 0.705253 TCGACCTCCTTCTTCCTCCT 59.295 55.000 0.00 0.00 0.00 3.69
330 331 1.107945 CTCGACCTCCTTCTTCCTCC 58.892 60.000 0.00 0.00 0.00 4.30
331 332 1.107945 CCTCGACCTCCTTCTTCCTC 58.892 60.000 0.00 0.00 0.00 3.71
332 333 0.973496 GCCTCGACCTCCTTCTTCCT 60.973 60.000 0.00 0.00 0.00 3.36
333 334 1.518302 GCCTCGACCTCCTTCTTCC 59.482 63.158 0.00 0.00 0.00 3.46
334 335 0.973496 AGGCCTCGACCTCCTTCTTC 60.973 60.000 0.00 0.00 33.62 2.87
335 336 1.079438 AGGCCTCGACCTCCTTCTT 59.921 57.895 0.00 0.00 33.62 2.52
336 337 2.774327 AGGCCTCGACCTCCTTCT 59.226 61.111 0.00 0.00 33.62 2.85
352 353 4.758251 TGTCCCATGCGTGCGGAG 62.758 66.667 14.32 0.00 0.00 4.63
353 354 2.245438 TAATGTCCCATGCGTGCGGA 62.245 55.000 10.95 10.95 0.00 5.54
354 355 1.165907 ATAATGTCCCATGCGTGCGG 61.166 55.000 0.00 3.71 0.00 5.69
355 356 0.662619 AATAATGTCCCATGCGTGCG 59.337 50.000 0.00 0.00 0.00 5.34
356 357 2.878406 ACTAATAATGTCCCATGCGTGC 59.122 45.455 0.00 0.00 0.00 5.34
357 358 3.250762 CCACTAATAATGTCCCATGCGTG 59.749 47.826 0.00 0.00 0.00 5.34
358 359 3.135712 TCCACTAATAATGTCCCATGCGT 59.864 43.478 0.00 0.00 0.00 5.24
359 360 3.738982 TCCACTAATAATGTCCCATGCG 58.261 45.455 0.00 0.00 0.00 4.73
360 361 3.503748 GCTCCACTAATAATGTCCCATGC 59.496 47.826 0.00 0.00 0.00 4.06
361 362 4.074970 GGCTCCACTAATAATGTCCCATG 58.925 47.826 0.00 0.00 0.00 3.66
362 363 3.983410 AGGCTCCACTAATAATGTCCCAT 59.017 43.478 0.00 0.00 0.00 4.00
363 364 3.391296 GAGGCTCCACTAATAATGTCCCA 59.609 47.826 2.15 0.00 0.00 4.37
364 365 3.244596 GGAGGCTCCACTAATAATGTCCC 60.245 52.174 28.55 0.00 36.28 4.46
365 366 3.648545 AGGAGGCTCCACTAATAATGTCC 59.351 47.826 33.86 3.83 39.61 4.02
366 367 4.965200 AGGAGGCTCCACTAATAATGTC 57.035 45.455 33.86 3.38 39.61 3.06
367 368 8.686739 ATATAAGGAGGCTCCACTAATAATGT 57.313 34.615 33.86 7.57 39.61 2.71
368 369 8.762645 TGATATAAGGAGGCTCCACTAATAATG 58.237 37.037 33.86 0.00 39.61 1.90
369 370 8.917414 TGATATAAGGAGGCTCCACTAATAAT 57.083 34.615 33.86 17.24 39.61 1.28
370 371 8.736097 TTGATATAAGGAGGCTCCACTAATAA 57.264 34.615 33.86 17.33 39.61 1.40
371 372 8.736097 TTTGATATAAGGAGGCTCCACTAATA 57.264 34.615 33.86 22.96 39.61 0.98
372 373 7.633018 TTTGATATAAGGAGGCTCCACTAAT 57.367 36.000 33.86 21.07 39.61 1.73
373 374 7.420214 CCTTTTGATATAAGGAGGCTCCACTAA 60.420 40.741 33.86 17.41 44.01 2.24
374 375 6.043243 CCTTTTGATATAAGGAGGCTCCACTA 59.957 42.308 33.86 23.85 44.01 2.74
375 376 5.163152 CCTTTTGATATAAGGAGGCTCCACT 60.163 44.000 33.86 22.53 44.01 4.00
376 377 5.066593 CCTTTTGATATAAGGAGGCTCCAC 58.933 45.833 33.86 17.30 44.01 4.02
377 378 4.975147 TCCTTTTGATATAAGGAGGCTCCA 59.025 41.667 33.86 16.23 44.72 3.86
378 379 5.568620 TCCTTTTGATATAAGGAGGCTCC 57.431 43.478 26.42 26.42 44.72 4.70
400 401 9.599056 TCTGATGGTCTAATGAGAGATATTTCT 57.401 33.333 0.00 0.00 30.20 2.52
404 405 8.259411 GCAATCTGATGGTCTAATGAGAGATAT 58.741 37.037 0.00 0.00 30.20 1.63
405 406 7.234166 TGCAATCTGATGGTCTAATGAGAGATA 59.766 37.037 0.00 0.00 30.20 1.98
406 407 6.042897 TGCAATCTGATGGTCTAATGAGAGAT 59.957 38.462 0.00 0.00 30.20 2.75
407 408 5.364735 TGCAATCTGATGGTCTAATGAGAGA 59.635 40.000 0.00 0.00 30.20 3.10
408 409 5.608449 TGCAATCTGATGGTCTAATGAGAG 58.392 41.667 0.00 0.00 30.20 3.20
409 410 5.454329 CCTGCAATCTGATGGTCTAATGAGA 60.454 44.000 0.00 0.00 0.00 3.27
410 411 4.755629 CCTGCAATCTGATGGTCTAATGAG 59.244 45.833 0.00 0.00 0.00 2.90
411 412 4.164796 ACCTGCAATCTGATGGTCTAATGA 59.835 41.667 0.00 0.00 0.00 2.57
412 413 4.458397 ACCTGCAATCTGATGGTCTAATG 58.542 43.478 0.00 0.00 0.00 1.90
413 414 4.785346 ACCTGCAATCTGATGGTCTAAT 57.215 40.909 0.00 0.00 0.00 1.73
414 415 4.574674 AACCTGCAATCTGATGGTCTAA 57.425 40.909 0.00 0.00 0.00 2.10
415 416 4.019411 TCAAACCTGCAATCTGATGGTCTA 60.019 41.667 0.00 0.00 0.00 2.59
416 417 3.087031 CAAACCTGCAATCTGATGGTCT 58.913 45.455 0.00 0.00 0.00 3.85
417 418 3.084039 TCAAACCTGCAATCTGATGGTC 58.916 45.455 0.00 0.00 0.00 4.02
418 419 3.159213 TCAAACCTGCAATCTGATGGT 57.841 42.857 0.00 0.00 0.00 3.55
419 420 4.430007 CATTCAAACCTGCAATCTGATGG 58.570 43.478 0.00 0.00 0.00 3.51
420 421 4.158949 TCCATTCAAACCTGCAATCTGATG 59.841 41.667 0.00 0.00 0.00 3.07
421 422 4.346730 TCCATTCAAACCTGCAATCTGAT 58.653 39.130 0.00 0.00 0.00 2.90
422 423 3.765381 TCCATTCAAACCTGCAATCTGA 58.235 40.909 0.00 0.00 0.00 3.27
423 424 4.730949 ATCCATTCAAACCTGCAATCTG 57.269 40.909 0.00 0.00 0.00 2.90
424 425 4.891756 CCTATCCATTCAAACCTGCAATCT 59.108 41.667 0.00 0.00 0.00 2.40
425 426 4.889409 TCCTATCCATTCAAACCTGCAATC 59.111 41.667 0.00 0.00 0.00 2.67
426 427 4.870636 TCCTATCCATTCAAACCTGCAAT 58.129 39.130 0.00 0.00 0.00 3.56
427 428 4.314522 TCCTATCCATTCAAACCTGCAA 57.685 40.909 0.00 0.00 0.00 4.08
428 429 4.079844 TCATCCTATCCATTCAAACCTGCA 60.080 41.667 0.00 0.00 0.00 4.41
429 430 4.464008 TCATCCTATCCATTCAAACCTGC 58.536 43.478 0.00 0.00 0.00 4.85
430 431 7.431249 CAAATCATCCTATCCATTCAAACCTG 58.569 38.462 0.00 0.00 0.00 4.00
431 432 6.552350 CCAAATCATCCTATCCATTCAAACCT 59.448 38.462 0.00 0.00 0.00 3.50
432 433 6.324770 ACCAAATCATCCTATCCATTCAAACC 59.675 38.462 0.00 0.00 0.00 3.27
433 434 7.352079 ACCAAATCATCCTATCCATTCAAAC 57.648 36.000 0.00 0.00 0.00 2.93
434 435 7.840716 AGAACCAAATCATCCTATCCATTCAAA 59.159 33.333 0.00 0.00 0.00 2.69
435 436 7.356680 AGAACCAAATCATCCTATCCATTCAA 58.643 34.615 0.00 0.00 0.00 2.69
436 437 6.914665 AGAACCAAATCATCCTATCCATTCA 58.085 36.000 0.00 0.00 0.00 2.57
437 438 6.432472 GGAGAACCAAATCATCCTATCCATTC 59.568 42.308 0.00 0.00 35.97 2.67
438 439 6.310149 GGAGAACCAAATCATCCTATCCATT 58.690 40.000 0.00 0.00 35.97 3.16
439 440 5.513788 CGGAGAACCAAATCATCCTATCCAT 60.514 44.000 0.00 0.00 35.59 3.41
440 441 4.202357 CGGAGAACCAAATCATCCTATCCA 60.202 45.833 0.00 0.00 35.59 3.41
441 442 4.319177 CGGAGAACCAAATCATCCTATCC 58.681 47.826 0.00 0.00 35.59 2.59
442 443 3.748568 GCGGAGAACCAAATCATCCTATC 59.251 47.826 0.00 0.00 35.59 2.08
443 444 3.496870 GGCGGAGAACCAAATCATCCTAT 60.497 47.826 0.00 0.00 35.59 2.57
444 445 2.158813 GGCGGAGAACCAAATCATCCTA 60.159 50.000 0.00 0.00 35.59 2.94
445 446 1.408822 GGCGGAGAACCAAATCATCCT 60.409 52.381 0.00 0.00 35.59 3.24
446 447 1.025041 GGCGGAGAACCAAATCATCC 58.975 55.000 0.00 0.00 35.59 3.51
447 448 1.025041 GGGCGGAGAACCAAATCATC 58.975 55.000 0.00 0.00 35.59 2.92
448 449 0.625849 AGGGCGGAGAACCAAATCAT 59.374 50.000 0.00 0.00 35.59 2.45
449 450 0.035439 GAGGGCGGAGAACCAAATCA 60.035 55.000 0.00 0.00 35.59 2.57
450 451 0.253327 AGAGGGCGGAGAACCAAATC 59.747 55.000 0.00 0.00 35.59 2.17
451 452 0.253327 GAGAGGGCGGAGAACCAAAT 59.747 55.000 0.00 0.00 35.59 2.32
452 453 0.836400 AGAGAGGGCGGAGAACCAAA 60.836 55.000 0.00 0.00 35.59 3.28
453 454 0.836400 AAGAGAGGGCGGAGAACCAA 60.836 55.000 0.00 0.00 35.59 3.67
454 455 0.836400 AAAGAGAGGGCGGAGAACCA 60.836 55.000 0.00 0.00 35.59 3.67
455 456 0.108089 GAAAGAGAGGGCGGAGAACC 60.108 60.000 0.00 0.00 0.00 3.62
456 457 0.899019 AGAAAGAGAGGGCGGAGAAC 59.101 55.000 0.00 0.00 0.00 3.01
457 458 1.645710 AAGAAAGAGAGGGCGGAGAA 58.354 50.000 0.00 0.00 0.00 2.87
458 459 2.526888 TAAGAAAGAGAGGGCGGAGA 57.473 50.000 0.00 0.00 0.00 3.71
459 460 2.159028 CCTTAAGAAAGAGAGGGCGGAG 60.159 54.545 3.36 0.00 34.37 4.63
460 461 1.831736 CCTTAAGAAAGAGAGGGCGGA 59.168 52.381 3.36 0.00 34.37 5.54
461 462 1.555533 ACCTTAAGAAAGAGAGGGCGG 59.444 52.381 3.36 0.00 34.37 6.13
462 463 3.336138 AACCTTAAGAAAGAGAGGGCG 57.664 47.619 3.36 0.00 34.37 6.13
463 464 4.652822 TCAAACCTTAAGAAAGAGAGGGC 58.347 43.478 3.36 0.00 34.37 5.19
464 465 6.151817 CCATTCAAACCTTAAGAAAGAGAGGG 59.848 42.308 3.36 0.00 34.37 4.30
465 466 6.942576 TCCATTCAAACCTTAAGAAAGAGAGG 59.057 38.462 3.36 3.21 34.37 3.69
466 467 7.986085 TCCATTCAAACCTTAAGAAAGAGAG 57.014 36.000 3.36 0.00 34.37 3.20
467 468 9.672673 CTATCCATTCAAACCTTAAGAAAGAGA 57.327 33.333 3.36 0.00 34.37 3.10
468 469 8.897752 CCTATCCATTCAAACCTTAAGAAAGAG 58.102 37.037 3.36 0.00 34.37 2.85
469 470 8.611257 TCCTATCCATTCAAACCTTAAGAAAGA 58.389 33.333 3.36 0.00 34.37 2.52
470 471 8.807948 TCCTATCCATTCAAACCTTAAGAAAG 57.192 34.615 3.36 0.00 0.00 2.62
471 472 9.189156 CATCCTATCCATTCAAACCTTAAGAAA 57.811 33.333 3.36 0.00 0.00 2.52
472 473 8.556589 TCATCCTATCCATTCAAACCTTAAGAA 58.443 33.333 3.36 0.00 0.00 2.52
473 474 8.101309 TCATCCTATCCATTCAAACCTTAAGA 57.899 34.615 3.36 0.00 0.00 2.10
474 475 8.930846 ATCATCCTATCCATTCAAACCTTAAG 57.069 34.615 0.00 0.00 0.00 1.85
475 476 9.713684 AAATCATCCTATCCATTCAAACCTTAA 57.286 29.630 0.00 0.00 0.00 1.85
476 477 9.135189 CAAATCATCCTATCCATTCAAACCTTA 57.865 33.333 0.00 0.00 0.00 2.69
477 478 7.070322 CCAAATCATCCTATCCATTCAAACCTT 59.930 37.037 0.00 0.00 0.00 3.50
478 479 6.552350 CCAAATCATCCTATCCATTCAAACCT 59.448 38.462 0.00 0.00 0.00 3.50
479 480 6.324770 ACCAAATCATCCTATCCATTCAAACC 59.675 38.462 0.00 0.00 0.00 3.27
480 481 7.352079 ACCAAATCATCCTATCCATTCAAAC 57.648 36.000 0.00 0.00 0.00 2.93
481 482 7.840716 AGAACCAAATCATCCTATCCATTCAAA 59.159 33.333 0.00 0.00 0.00 2.69
482 483 7.356680 AGAACCAAATCATCCTATCCATTCAA 58.643 34.615 0.00 0.00 0.00 2.69
483 484 6.914665 AGAACCAAATCATCCTATCCATTCA 58.085 36.000 0.00 0.00 0.00 2.57
484 485 6.432472 GGAGAACCAAATCATCCTATCCATTC 59.568 42.308 0.00 0.00 35.97 2.67
485 486 6.310149 GGAGAACCAAATCATCCTATCCATT 58.690 40.000 0.00 0.00 35.97 3.16
486 487 5.513788 CGGAGAACCAAATCATCCTATCCAT 60.514 44.000 0.00 0.00 35.59 3.41
487 488 4.202357 CGGAGAACCAAATCATCCTATCCA 60.202 45.833 0.00 0.00 35.59 3.41
488 489 4.319177 CGGAGAACCAAATCATCCTATCC 58.681 47.826 0.00 0.00 35.59 2.59
489 490 3.748568 GCGGAGAACCAAATCATCCTATC 59.251 47.826 0.00 0.00 35.59 2.08
490 491 3.496870 GGCGGAGAACCAAATCATCCTAT 60.497 47.826 0.00 0.00 35.59 2.57
491 492 2.158813 GGCGGAGAACCAAATCATCCTA 60.159 50.000 0.00 0.00 35.59 2.94
492 493 1.408822 GGCGGAGAACCAAATCATCCT 60.409 52.381 0.00 0.00 35.59 3.24
493 494 1.025041 GGCGGAGAACCAAATCATCC 58.975 55.000 0.00 0.00 35.59 3.51
494 495 1.025041 GGGCGGAGAACCAAATCATC 58.975 55.000 0.00 0.00 35.59 2.92
495 496 0.625849 AGGGCGGAGAACCAAATCAT 59.374 50.000 0.00 0.00 35.59 2.45
496 497 0.035439 GAGGGCGGAGAACCAAATCA 60.035 55.000 0.00 0.00 35.59 2.57
497 498 0.253327 AGAGGGCGGAGAACCAAATC 59.747 55.000 0.00 0.00 35.59 2.17
498 499 0.253327 GAGAGGGCGGAGAACCAAAT 59.747 55.000 0.00 0.00 35.59 2.32
499 500 0.836400 AGAGAGGGCGGAGAACCAAA 60.836 55.000 0.00 0.00 35.59 3.28
500 501 0.836400 AAGAGAGGGCGGAGAACCAA 60.836 55.000 0.00 0.00 35.59 3.67
501 502 0.836400 AAAGAGAGGGCGGAGAACCA 60.836 55.000 0.00 0.00 35.59 3.67
502 503 0.108089 GAAAGAGAGGGCGGAGAACC 60.108 60.000 0.00 0.00 0.00 3.62
503 504 0.899019 AGAAAGAGAGGGCGGAGAAC 59.101 55.000 0.00 0.00 0.00 3.01
504 505 1.645710 AAGAAAGAGAGGGCGGAGAA 58.354 50.000 0.00 0.00 0.00 2.87
505 506 2.526888 TAAGAAAGAGAGGGCGGAGA 57.473 50.000 0.00 0.00 0.00 3.71
506 507 4.145807 TCTATAAGAAAGAGAGGGCGGAG 58.854 47.826 0.00 0.00 0.00 4.63
507 508 4.180377 TCTATAAGAAAGAGAGGGCGGA 57.820 45.455 0.00 0.00 0.00 5.54
508 509 4.501743 GGTTCTATAAGAAAGAGAGGGCGG 60.502 50.000 0.00 0.00 35.75 6.13
509 510 4.099573 TGGTTCTATAAGAAAGAGAGGGCG 59.900 45.833 0.00 0.00 35.75 6.13
510 511 5.615925 TGGTTCTATAAGAAAGAGAGGGC 57.384 43.478 0.00 0.00 35.75 5.19
511 512 8.267894 TGATTTGGTTCTATAAGAAAGAGAGGG 58.732 37.037 0.00 0.00 35.75 4.30
512 513 9.103861 GTGATTTGGTTCTATAAGAAAGAGAGG 57.896 37.037 0.00 0.00 35.75 3.69
513 514 9.103861 GGTGATTTGGTTCTATAAGAAAGAGAG 57.896 37.037 0.00 0.00 35.75 3.20
514 515 8.602424 TGGTGATTTGGTTCTATAAGAAAGAGA 58.398 33.333 0.00 0.00 35.75 3.10
515 516 8.792830 TGGTGATTTGGTTCTATAAGAAAGAG 57.207 34.615 0.00 0.00 35.75 2.85
516 517 9.581289 TTTGGTGATTTGGTTCTATAAGAAAGA 57.419 29.630 0.00 0.00 35.75 2.52
519 520 9.527157 TGATTTGGTGATTTGGTTCTATAAGAA 57.473 29.630 0.00 0.00 0.00 2.52
520 521 9.699410 ATGATTTGGTGATTTGGTTCTATAAGA 57.301 29.630 0.00 0.00 0.00 2.10
521 522 9.956720 GATGATTTGGTGATTTGGTTCTATAAG 57.043 33.333 0.00 0.00 0.00 1.73
522 523 8.912988 GGATGATTTGGTGATTTGGTTCTATAA 58.087 33.333 0.00 0.00 0.00 0.98
523 524 8.281531 AGGATGATTTGGTGATTTGGTTCTATA 58.718 33.333 0.00 0.00 0.00 1.31
524 525 7.128077 AGGATGATTTGGTGATTTGGTTCTAT 58.872 34.615 0.00 0.00 0.00 1.98
525 526 6.493166 AGGATGATTTGGTGATTTGGTTCTA 58.507 36.000 0.00 0.00 0.00 2.10
526 527 5.336102 AGGATGATTTGGTGATTTGGTTCT 58.664 37.500 0.00 0.00 0.00 3.01
527 528 5.665916 AGGATGATTTGGTGATTTGGTTC 57.334 39.130 0.00 0.00 0.00 3.62
528 529 6.324770 GGATAGGATGATTTGGTGATTTGGTT 59.675 38.462 0.00 0.00 0.00 3.67
529 530 5.835280 GGATAGGATGATTTGGTGATTTGGT 59.165 40.000 0.00 0.00 0.00 3.67
530 531 5.834742 TGGATAGGATGATTTGGTGATTTGG 59.165 40.000 0.00 0.00 0.00 3.28
531 532 6.964807 TGGATAGGATGATTTGGTGATTTG 57.035 37.500 0.00 0.00 0.00 2.32
532 533 7.785985 TGAATGGATAGGATGATTTGGTGATTT 59.214 33.333 0.00 0.00 0.00 2.17
533 534 7.299896 TGAATGGATAGGATGATTTGGTGATT 58.700 34.615 0.00 0.00 0.00 2.57
534 535 6.855667 TGAATGGATAGGATGATTTGGTGAT 58.144 36.000 0.00 0.00 0.00 3.06
535 536 6.264771 TGAATGGATAGGATGATTTGGTGA 57.735 37.500 0.00 0.00 0.00 4.02
536 537 6.964807 TTGAATGGATAGGATGATTTGGTG 57.035 37.500 0.00 0.00 0.00 4.17
625 626 5.765510 TGAGGATTGTAACCTAATGGCATT 58.234 37.500 18.01 18.01 37.93 3.56
634 635 4.062991 GACGTGTTTGAGGATTGTAACCT 58.937 43.478 0.00 0.00 40.80 3.50
885 976 3.339093 GTGGAGGAGGGTTGGGGG 61.339 72.222 0.00 0.00 0.00 5.40
891 983 3.314331 CAGTGCGTGGAGGAGGGT 61.314 66.667 0.00 0.00 0.00 4.34
1138 1230 4.499183 AGAAAGAAAGAGATGTACCTGCG 58.501 43.478 0.00 0.00 0.00 5.18
1207 1309 4.726035 AGGAATCATGAGAAGGCATCAT 57.274 40.909 0.09 0.00 37.90 2.45
1208 1310 4.204799 CAAGGAATCATGAGAAGGCATCA 58.795 43.478 0.09 0.00 0.00 3.07
1209 1311 4.205587 ACAAGGAATCATGAGAAGGCATC 58.794 43.478 0.09 0.00 0.00 3.91
1210 1312 4.246712 ACAAGGAATCATGAGAAGGCAT 57.753 40.909 0.09 0.00 0.00 4.40
1211 1313 3.726557 ACAAGGAATCATGAGAAGGCA 57.273 42.857 0.09 0.00 0.00 4.75
1212 1314 4.775236 ACTACAAGGAATCATGAGAAGGC 58.225 43.478 0.09 0.00 0.00 4.35
1213 1315 6.325028 TCCTACTACAAGGAATCATGAGAAGG 59.675 42.308 0.09 0.00 42.83 3.46
1214 1316 7.353414 TCCTACTACAAGGAATCATGAGAAG 57.647 40.000 0.09 0.00 42.83 2.85
1215 1317 6.325028 CCTCCTACTACAAGGAATCATGAGAA 59.675 42.308 0.09 0.00 45.08 2.87
1216 1318 5.835819 CCTCCTACTACAAGGAATCATGAGA 59.164 44.000 0.09 0.00 45.08 3.27
1243 1345 3.804325 CACATACTCGGATCCAATGTGAC 59.196 47.826 26.88 0.00 46.57 3.67
1615 1717 9.462174 CAGCAACAGAAATACAAATTAACAAGA 57.538 29.630 0.00 0.00 0.00 3.02
1784 1899 8.691661 TGTGATGCATACTGTCTATAACTCTA 57.308 34.615 0.00 0.00 0.00 2.43
1785 1900 7.255766 CCTGTGATGCATACTGTCTATAACTCT 60.256 40.741 0.00 0.00 0.00 3.24
1786 1901 6.865726 CCTGTGATGCATACTGTCTATAACTC 59.134 42.308 0.00 0.00 0.00 3.01
1787 1902 6.739843 GCCTGTGATGCATACTGTCTATAACT 60.740 42.308 0.00 0.00 0.00 2.24
1788 1903 5.406780 GCCTGTGATGCATACTGTCTATAAC 59.593 44.000 0.00 0.00 0.00 1.89
1789 1904 5.305386 AGCCTGTGATGCATACTGTCTATAA 59.695 40.000 0.00 0.00 0.00 0.98
1849 1964 7.526608 TCGTTGCTTATTTGATTCTACAAAGG 58.473 34.615 0.00 0.00 41.87 3.11
2018 2133 1.887198 GCTCTAGCGGTCTAGCCATAA 59.113 52.381 9.34 0.00 41.59 1.90
2286 2408 9.685276 TGAGACACATACCTTGAATAATGAAAT 57.315 29.630 0.00 0.00 0.00 2.17
2837 2966 3.005539 AGTGGCTCCAGCGTCCAT 61.006 61.111 0.00 0.00 43.26 3.41
2889 3018 4.406003 AGCATGGAGTTTTATAGTCGGAGT 59.594 41.667 0.00 0.00 0.00 3.85
3105 3275 6.443849 TGTACTCCTAATCCCTCATTCAAACT 59.556 38.462 0.00 0.00 0.00 2.66
3207 3377 6.812656 CACAATGCCTGCAAATAAGAACATAA 59.187 34.615 0.00 0.00 0.00 1.90
3340 3563 2.253403 GATGTTGGGGAGGGACGGTC 62.253 65.000 0.00 0.00 0.00 4.79
3345 3568 2.418669 GATTAGGATGTTGGGGAGGGA 58.581 52.381 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.