Multiple sequence alignment - TraesCS1A01G116200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G116200 chr1A 100.000 7087 0 0 1 7087 121746880 121739794 0.000000e+00 13088.0
1 TraesCS1A01G116200 chr1A 100.000 273 0 0 7324 7596 121739557 121739285 8.800000e-139 505.0
2 TraesCS1A01G116200 chr1D 95.733 5226 144 27 1434 6631 113876270 113871096 0.000000e+00 8342.0
3 TraesCS1A01G116200 chr1D 91.870 738 31 15 370 1092 113877318 113876595 0.000000e+00 1003.0
4 TraesCS1A01G116200 chr1D 96.467 368 8 4 6721 7087 113871094 113870731 3.030000e-168 603.0
5 TraesCS1A01G116200 chr1D 93.631 314 16 2 1091 1404 113876561 113876252 4.150000e-127 466.0
6 TraesCS1A01G116200 chr1D 94.931 217 6 3 7334 7547 113870373 113870159 1.220000e-87 335.0
7 TraesCS1A01G116200 chr1D 95.833 96 4 0 6630 6725 407351087 407351182 1.020000e-33 156.0
8 TraesCS1A01G116200 chr1D 88.393 112 7 5 263 368 113877496 113877385 6.190000e-26 130.0
9 TraesCS1A01G116200 chr1D 95.455 66 1 2 7533 7596 113870151 113870086 3.750000e-18 104.0
10 TraesCS1A01G116200 chr1D 98.039 51 1 0 1 51 204998955 204999005 1.050000e-13 89.8
11 TraesCS1A01G116200 chr1B 96.543 5004 129 20 1664 6638 173977189 173972201 0.000000e+00 8242.0
12 TraesCS1A01G116200 chr1B 90.885 746 39 15 370 1098 173978412 173977679 0.000000e+00 974.0
13 TraesCS1A01G116200 chr1B 95.732 328 11 3 1093 1419 173977650 173977325 6.750000e-145 525.0
14 TraesCS1A01G116200 chr1B 92.373 354 15 8 6721 7073 173972202 173971860 1.900000e-135 494.0
15 TraesCS1A01G116200 chr1B 97.778 90 2 0 6634 6723 660748483 660748394 1.020000e-33 156.0
16 TraesCS1A01G116200 chr1B 94.898 98 4 1 6633 6730 315081502 315081406 1.320000e-32 152.0
17 TraesCS1A01G116200 chr6B 93.208 4152 210 31 1493 5611 84124817 84128929 0.000000e+00 6039.0
18 TraesCS1A01G116200 chr6B 90.482 830 53 13 5702 6517 84128946 84129763 0.000000e+00 1072.0
19 TraesCS1A01G116200 chr6B 83.019 318 30 17 788 1092 84124213 84124519 4.520000e-67 267.0
20 TraesCS1A01G116200 chr6B 82.979 282 27 9 1094 1361 84124551 84124825 1.270000e-57 235.0
21 TraesCS1A01G116200 chr6B 86.538 208 11 3 550 740 84120029 84120236 5.970000e-51 213.0
22 TraesCS1A01G116200 chr6B 84.559 136 14 3 438 567 84119861 84119995 2.220000e-25 128.0
23 TraesCS1A01G116200 chr6B 84.559 136 10 5 2226 2361 715159021 715159145 2.880000e-24 124.0
24 TraesCS1A01G116200 chr6B 96.491 57 2 0 1 57 378957831 378957887 2.260000e-15 95.3
25 TraesCS1A01G116200 chr6B 92.500 40 3 0 228 267 64689978 64690017 2.960000e-04 58.4
26 TraesCS1A01G116200 chr6A 92.953 4158 218 31 1498 5611 47898178 47902304 0.000000e+00 5986.0
27 TraesCS1A01G116200 chr6A 89.759 830 58 12 5702 6517 47902321 47903137 0.000000e+00 1037.0
28 TraesCS1A01G116200 chr6A 84.375 288 21 9 1097 1361 47897893 47898179 2.100000e-65 261.0
29 TraesCS1A01G116200 chr6A 82.937 252 30 9 6786 7026 47903386 47903635 1.660000e-51 215.0
30 TraesCS1A01G116200 chr6A 81.048 248 25 16 847 1092 47897624 47897851 2.180000e-40 178.0
31 TraesCS1A01G116200 chr6A 83.256 215 12 7 550 740 47893471 47893685 7.830000e-40 176.0
32 TraesCS1A01G116200 chr6A 82.192 146 14 6 433 567 47893302 47893446 1.730000e-21 115.0
33 TraesCS1A01G116200 chr6A 91.304 46 3 1 223 268 363523513 363523469 2.290000e-05 62.1
34 TraesCS1A01G116200 chrUn 93.288 3367 176 18 1503 4843 143898862 143902204 0.000000e+00 4920.0
35 TraesCS1A01G116200 chrUn 93.540 774 37 8 4848 5616 143902244 143903009 0.000000e+00 1140.0
36 TraesCS1A01G116200 chrUn 90.489 757 47 10 5781 6517 143903069 143903820 0.000000e+00 976.0
37 TraesCS1A01G116200 chrUn 78.955 727 92 33 1703 2374 75223049 75223769 9.050000e-119 438.0
38 TraesCS1A01G116200 chrUn 86.445 391 40 4 1503 1888 104961816 104962198 4.240000e-112 416.0
39 TraesCS1A01G116200 chrUn 80.737 353 23 10 431 739 143894330 143894681 4.580000e-57 233.0
40 TraesCS1A01G116200 chrUn 80.247 324 38 16 788 1092 143898214 143898530 3.570000e-53 220.0
41 TraesCS1A01G116200 chrUn 97.872 47 1 0 5702 5748 143903017 143903063 1.760000e-11 82.4
42 TraesCS1A01G116200 chr3D 94.202 1397 71 7 1592 2982 7924966 7923574 0.000000e+00 2122.0
43 TraesCS1A01G116200 chr3D 93.182 44 2 1 224 267 126384912 126384954 6.360000e-06 63.9
44 TraesCS1A01G116200 chr7D 87.374 396 36 5 1501 1891 27866464 27866078 7.000000e-120 442.0
45 TraesCS1A01G116200 chr7D 95.833 96 4 0 6630 6725 271541866 271541771 1.020000e-33 156.0
46 TraesCS1A01G116200 chr5B 88.055 293 30 4 1601 1888 380782937 380783229 7.300000e-90 342.0
47 TraesCS1A01G116200 chr5B 96.809 94 3 0 6630 6723 127201054 127201147 2.840000e-34 158.0
48 TraesCS1A01G116200 chr5B 90.083 121 9 3 6637 6755 82872347 82872466 3.670000e-33 154.0
49 TraesCS1A01G116200 chr3B 77.742 310 67 2 3404 3712 525608744 525609052 1.010000e-43 189.0
50 TraesCS1A01G116200 chr3B 94.059 101 4 1 6630 6728 232569403 232569303 1.320000e-32 152.0
51 TraesCS1A01G116200 chr3B 92.453 106 6 2 6626 6729 707439719 707439614 4.750000e-32 150.0
52 TraesCS1A01G116200 chr3B 88.889 45 4 1 224 268 42678215 42678172 4.000000e-03 54.7
53 TraesCS1A01G116200 chr7B 95.000 100 5 0 6635 6734 556741426 556741327 2.840000e-34 158.0
54 TraesCS1A01G116200 chr7B 96.970 33 0 1 241 273 532116414 532116383 4.000000e-03 54.7
55 TraesCS1A01G116200 chr6D 79.134 254 32 12 1703 1944 468945629 468945873 1.020000e-33 156.0
56 TraesCS1A01G116200 chr6D 80.571 175 14 7 2203 2374 468916504 468916661 4.820000e-22 117.0
57 TraesCS1A01G116200 chr6D 82.812 128 18 4 938 1064 468914793 468914917 2.240000e-20 111.0
58 TraesCS1A01G116200 chr6D 78.409 176 31 5 7324 7495 350931382 350931554 2.900000e-19 108.0
59 TraesCS1A01G116200 chr6D 96.078 51 2 0 1 51 360696427 360696377 4.880000e-12 84.2
60 TraesCS1A01G116200 chr6D 90.196 51 4 1 226 275 296346071 296346021 1.770000e-06 65.8
61 TraesCS1A01G116200 chr5D 98.039 51 1 0 1 51 463089685 463089635 1.050000e-13 89.8
62 TraesCS1A01G116200 chr5D 95.122 41 2 0 226 266 256747529 256747569 1.770000e-06 65.8
63 TraesCS1A01G116200 chr5D 88.462 52 5 1 226 276 344825475 344825424 2.290000e-05 62.1
64 TraesCS1A01G116200 chr4D 98.039 51 1 0 1 51 499742183 499742233 1.050000e-13 89.8
65 TraesCS1A01G116200 chr4D 96.078 51 2 0 1 51 216324068 216324118 4.880000e-12 84.2
66 TraesCS1A01G116200 chr2D 98.039 51 1 0 1 51 313020899 313020849 1.050000e-13 89.8
67 TraesCS1A01G116200 chr4B 98.000 50 1 0 1 50 659674721 659674770 3.780000e-13 87.9
68 TraesCS1A01G116200 chr4B 92.857 42 2 1 224 265 276714286 276714246 8.230000e-05 60.2
69 TraesCS1A01G116200 chr5A 92.982 57 4 0 1 57 79194045 79193989 4.880000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G116200 chr1A 121739285 121746880 7595 True 6796.500000 13088 100.000000 1 7596 2 chr1A.!!$R1 7595
1 TraesCS1A01G116200 chr1D 113870086 113877496 7410 True 1569.000000 8342 93.782857 263 7596 7 chr1D.!!$R1 7333
2 TraesCS1A01G116200 chr1B 173971860 173978412 6552 True 2558.750000 8242 93.883250 370 7073 4 chr1B.!!$R3 6703
3 TraesCS1A01G116200 chr6B 84119861 84129763 9902 False 1325.666667 6039 86.797500 438 6517 6 chr6B.!!$F4 6079
4 TraesCS1A01G116200 chr6A 47893302 47903635 10333 False 1138.285714 5986 85.217143 433 7026 7 chr6A.!!$F1 6593
5 TraesCS1A01G116200 chrUn 143894330 143903820 9490 False 1261.900000 4920 89.362167 431 6517 6 chrUn.!!$F3 6086
6 TraesCS1A01G116200 chrUn 75223049 75223769 720 False 438.000000 438 78.955000 1703 2374 1 chrUn.!!$F1 671
7 TraesCS1A01G116200 chr3D 7923574 7924966 1392 True 2122.000000 2122 94.202000 1592 2982 1 chr3D.!!$R1 1390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
108 109 0.032540 TCCGATGCATCTCATGGACG 59.967 55.0 23.73 8.99 35.05 4.79 F
397 469 0.106015 AGGGCTTGGCACTTGACTTT 60.106 50.0 0.00 0.00 40.61 2.66 F
1316 5784 0.323087 GTCCGTTAATGGTGGCCCTT 60.323 55.0 13.49 0.00 0.00 3.95 F
1418 5889 0.110295 CCACACTCCCACATCCACAA 59.890 55.0 0.00 0.00 0.00 3.33 F
1420 5891 0.110486 ACACTCCCACATCCACAACC 59.890 55.0 0.00 0.00 0.00 3.77 F
1426 5897 0.467106 CCACATCCACAACCCACACA 60.467 55.0 0.00 0.00 0.00 3.72 F
4051 8650 0.465460 GTGGTGGCCTTGACACTGAA 60.465 55.0 3.32 0.00 42.03 3.02 F
6254 10907 0.621571 CCTCAAGGGTCTCATGGGGA 60.622 60.0 0.00 0.00 36.81 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1399 5870 0.110295 TTGTGGATGTGGGAGTGTGG 59.890 55.000 0.00 0.0 0.00 4.17 R
1401 5872 0.110486 GGTTGTGGATGTGGGAGTGT 59.890 55.000 0.00 0.0 0.00 3.55 R
2251 6815 3.251484 TCAATGTCTTCTCCTTGACCCT 58.749 45.455 0.00 0.0 32.67 4.34 R
3358 7944 0.898320 CCCTCCCTATCATACCTGCG 59.102 60.000 0.00 0.0 0.00 5.18 R
3880 8468 0.324275 GGTTATTCCCAGGCCAAGCA 60.324 55.000 5.01 0.0 0.00 3.91 R
4063 8662 2.573462 AGAGACATACACAAGCCATGGT 59.427 45.455 14.67 0.0 0.00 3.55 R
6350 11003 0.460311 CGACGGCTTTCTGGGTATCT 59.540 55.000 0.00 0.0 0.00 1.98 R
7323 12100 0.520404 CTTGCGCACTCAAGCATCTT 59.480 50.000 11.12 0.0 43.42 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.926860 CACACTCGTGCATATTCAAGAA 57.073 40.909 0.00 0.00 36.06 2.52
51 52 5.475273 CACACTCGTGCATATTCAAGAAT 57.525 39.130 0.00 0.52 36.06 2.40
52 53 5.872635 CACACTCGTGCATATTCAAGAATT 58.127 37.500 0.02 0.00 36.06 2.17
53 54 6.317088 CACACTCGTGCATATTCAAGAATTT 58.683 36.000 0.02 0.00 36.06 1.82
54 55 6.803320 CACACTCGTGCATATTCAAGAATTTT 59.197 34.615 0.02 0.00 36.06 1.82
55 56 7.326789 CACACTCGTGCATATTCAAGAATTTTT 59.673 33.333 0.02 0.00 36.06 1.94
81 82 7.017319 AGTATTATATAAGGACCTTGGCACC 57.983 40.000 17.47 0.00 0.00 5.01
82 83 4.717279 TTATATAAGGACCTTGGCACCC 57.283 45.455 17.47 0.00 0.00 4.61
83 84 0.834612 TATAAGGACCTTGGCACCCG 59.165 55.000 17.47 0.00 0.00 5.28
84 85 0.912487 ATAAGGACCTTGGCACCCGA 60.912 55.000 17.47 0.00 0.00 5.14
85 86 1.550130 TAAGGACCTTGGCACCCGAG 61.550 60.000 17.47 0.00 34.87 4.63
86 87 3.319198 GGACCTTGGCACCCGAGA 61.319 66.667 0.00 0.00 37.20 4.04
87 88 2.266055 GACCTTGGCACCCGAGAG 59.734 66.667 0.00 0.00 37.20 3.20
88 89 3.959991 GACCTTGGCACCCGAGAGC 62.960 68.421 0.00 0.00 37.20 4.09
89 90 3.710722 CCTTGGCACCCGAGAGCT 61.711 66.667 0.00 0.00 37.20 4.09
90 91 2.125350 CTTGGCACCCGAGAGCTC 60.125 66.667 5.27 5.27 37.20 4.09
91 92 3.672295 CTTGGCACCCGAGAGCTCC 62.672 68.421 10.93 0.68 37.20 4.70
94 95 3.532155 GCACCCGAGAGCTCCGAT 61.532 66.667 21.43 9.75 0.00 4.18
95 96 2.415010 CACCCGAGAGCTCCGATG 59.585 66.667 21.43 15.90 0.00 3.84
96 97 3.532155 ACCCGAGAGCTCCGATGC 61.532 66.667 21.43 2.85 0.00 3.91
97 98 3.531207 CCCGAGAGCTCCGATGCA 61.531 66.667 21.43 0.00 34.99 3.96
98 99 2.733301 CCGAGAGCTCCGATGCAT 59.267 61.111 21.43 0.00 34.99 3.96
99 100 1.372748 CCGAGAGCTCCGATGCATC 60.373 63.158 21.43 17.10 34.99 3.91
100 101 1.659233 CGAGAGCTCCGATGCATCT 59.341 57.895 23.73 5.06 34.99 2.90
101 102 0.387112 CGAGAGCTCCGATGCATCTC 60.387 60.000 23.73 14.02 35.70 2.75
102 103 0.672889 GAGAGCTCCGATGCATCTCA 59.327 55.000 23.73 9.43 37.28 3.27
103 104 1.273048 GAGAGCTCCGATGCATCTCAT 59.727 52.381 23.73 5.87 37.28 2.90
104 105 1.001068 AGAGCTCCGATGCATCTCATG 59.999 52.381 23.73 12.13 35.05 3.07
105 106 0.035036 AGCTCCGATGCATCTCATGG 59.965 55.000 23.73 17.03 35.05 3.66
106 107 0.034476 GCTCCGATGCATCTCATGGA 59.966 55.000 23.73 20.00 35.05 3.41
107 108 1.793258 CTCCGATGCATCTCATGGAC 58.207 55.000 23.73 0.00 35.05 4.02
108 109 0.032540 TCCGATGCATCTCATGGACG 59.967 55.000 23.73 8.99 35.05 4.79
109 110 0.249615 CCGATGCATCTCATGGACGT 60.250 55.000 23.73 0.00 35.05 4.34
110 111 1.575244 CGATGCATCTCATGGACGTT 58.425 50.000 23.73 0.00 35.05 3.99
111 112 2.545742 CCGATGCATCTCATGGACGTTA 60.546 50.000 23.73 0.00 35.05 3.18
112 113 3.320626 CGATGCATCTCATGGACGTTAT 58.679 45.455 23.73 0.00 35.05 1.89
113 114 4.485163 CGATGCATCTCATGGACGTTATA 58.515 43.478 23.73 0.00 35.05 0.98
114 115 4.324669 CGATGCATCTCATGGACGTTATAC 59.675 45.833 23.73 0.00 35.05 1.47
115 116 4.937201 TGCATCTCATGGACGTTATACT 57.063 40.909 0.00 0.00 0.00 2.12
116 117 6.590234 ATGCATCTCATGGACGTTATACTA 57.410 37.500 0.00 0.00 33.26 1.82
117 118 5.769367 TGCATCTCATGGACGTTATACTAC 58.231 41.667 0.00 0.00 0.00 2.73
118 119 5.162075 GCATCTCATGGACGTTATACTACC 58.838 45.833 0.00 0.00 0.00 3.18
119 120 5.278808 GCATCTCATGGACGTTATACTACCA 60.279 44.000 0.00 0.00 35.09 3.25
120 121 5.762825 TCTCATGGACGTTATACTACCAC 57.237 43.478 0.00 0.00 33.38 4.16
121 122 5.443283 TCTCATGGACGTTATACTACCACT 58.557 41.667 0.00 0.00 33.38 4.00
122 123 6.594744 TCTCATGGACGTTATACTACCACTA 58.405 40.000 0.00 0.00 33.38 2.74
123 124 7.229308 TCTCATGGACGTTATACTACCACTAT 58.771 38.462 0.00 0.00 33.38 2.12
124 125 7.389884 TCTCATGGACGTTATACTACCACTATC 59.610 40.741 0.00 0.00 33.38 2.08
125 126 6.999871 TCATGGACGTTATACTACCACTATCA 59.000 38.462 0.00 0.00 33.38 2.15
126 127 6.624352 TGGACGTTATACTACCACTATCAC 57.376 41.667 0.00 0.00 0.00 3.06
127 128 6.121590 TGGACGTTATACTACCACTATCACA 58.878 40.000 0.00 0.00 0.00 3.58
128 129 6.602803 TGGACGTTATACTACCACTATCACAA 59.397 38.462 0.00 0.00 0.00 3.33
129 130 7.122501 TGGACGTTATACTACCACTATCACAAA 59.877 37.037 0.00 0.00 0.00 2.83
130 131 7.975616 GGACGTTATACTACCACTATCACAAAA 59.024 37.037 0.00 0.00 0.00 2.44
131 132 9.357652 GACGTTATACTACCACTATCACAAAAA 57.642 33.333 0.00 0.00 0.00 1.94
157 158 9.991388 AAAAAGAATGAATGTTGTTGAATTGTG 57.009 25.926 0.00 0.00 0.00 3.33
158 159 8.945481 AAAGAATGAATGTTGTTGAATTGTGA 57.055 26.923 0.00 0.00 0.00 3.58
159 160 9.550406 AAAGAATGAATGTTGTTGAATTGTGAT 57.450 25.926 0.00 0.00 0.00 3.06
160 161 8.528917 AGAATGAATGTTGTTGAATTGTGATG 57.471 30.769 0.00 0.00 0.00 3.07
161 162 8.361889 AGAATGAATGTTGTTGAATTGTGATGA 58.638 29.630 0.00 0.00 0.00 2.92
162 163 7.878477 ATGAATGTTGTTGAATTGTGATGAC 57.122 32.000 0.00 0.00 0.00 3.06
163 164 6.803642 TGAATGTTGTTGAATTGTGATGACA 58.196 32.000 0.00 0.00 0.00 3.58
164 165 7.263496 TGAATGTTGTTGAATTGTGATGACAA 58.737 30.769 0.00 0.00 46.13 3.18
165 166 7.763071 TGAATGTTGTTGAATTGTGATGACAAA 59.237 29.630 0.73 0.00 45.23 2.83
166 167 8.665643 AATGTTGTTGAATTGTGATGACAAAT 57.334 26.923 0.73 0.00 45.23 2.32
167 168 7.697352 TGTTGTTGAATTGTGATGACAAATC 57.303 32.000 0.73 3.85 45.23 2.17
168 169 7.490840 TGTTGTTGAATTGTGATGACAAATCT 58.509 30.769 13.25 0.00 45.23 2.40
169 170 7.648908 TGTTGTTGAATTGTGATGACAAATCTC 59.351 33.333 13.25 6.47 45.23 2.75
170 171 7.274603 TGTTGAATTGTGATGACAAATCTCA 57.725 32.000 13.25 8.63 45.23 3.27
171 172 7.714703 TGTTGAATTGTGATGACAAATCTCAA 58.285 30.769 13.25 13.11 45.23 3.02
172 173 8.196103 TGTTGAATTGTGATGACAAATCTCAAA 58.804 29.630 13.25 0.00 45.23 2.69
173 174 9.199982 GTTGAATTGTGATGACAAATCTCAAAT 57.800 29.630 13.25 0.22 45.23 2.32
174 175 8.975410 TGAATTGTGATGACAAATCTCAAATC 57.025 30.769 13.25 8.35 45.23 2.17
175 176 8.799367 TGAATTGTGATGACAAATCTCAAATCT 58.201 29.630 13.25 3.09 45.23 2.40
176 177 9.635520 GAATTGTGATGACAAATCTCAAATCTT 57.364 29.630 0.73 0.00 45.23 2.40
177 178 9.991906 AATTGTGATGACAAATCTCAAATCTTT 57.008 25.926 0.73 0.00 45.23 2.52
178 179 9.991906 ATTGTGATGACAAATCTCAAATCTTTT 57.008 25.926 0.73 0.00 45.23 2.27
179 180 9.820725 TTGTGATGACAAATCTCAAATCTTTTT 57.179 25.926 0.00 0.00 39.20 1.94
180 181 9.467258 TGTGATGACAAATCTCAAATCTTTTTC 57.533 29.630 0.00 0.00 0.00 2.29
181 182 8.919661 GTGATGACAAATCTCAAATCTTTTTCC 58.080 33.333 0.00 0.00 0.00 3.13
182 183 8.640651 TGATGACAAATCTCAAATCTTTTTCCA 58.359 29.630 0.00 0.00 0.00 3.53
183 184 9.649167 GATGACAAATCTCAAATCTTTTTCCAT 57.351 29.630 0.00 0.00 0.00 3.41
184 185 8.821147 TGACAAATCTCAAATCTTTTTCCATG 57.179 30.769 0.00 0.00 0.00 3.66
185 186 7.385752 TGACAAATCTCAAATCTTTTTCCATGC 59.614 33.333 0.00 0.00 0.00 4.06
186 187 7.218614 ACAAATCTCAAATCTTTTTCCATGCA 58.781 30.769 0.00 0.00 0.00 3.96
187 188 7.881232 ACAAATCTCAAATCTTTTTCCATGCAT 59.119 29.630 0.00 0.00 0.00 3.96
188 189 9.373603 CAAATCTCAAATCTTTTTCCATGCATA 57.626 29.630 0.00 0.00 0.00 3.14
189 190 9.595823 AAATCTCAAATCTTTTTCCATGCATAG 57.404 29.630 0.00 0.00 0.00 2.23
190 191 7.943079 TCTCAAATCTTTTTCCATGCATAGA 57.057 32.000 0.00 0.00 0.00 1.98
191 192 8.529424 TCTCAAATCTTTTTCCATGCATAGAT 57.471 30.769 0.00 0.00 0.00 1.98
192 193 9.631257 TCTCAAATCTTTTTCCATGCATAGATA 57.369 29.630 0.00 0.00 0.00 1.98
198 199 8.929260 TCTTTTTCCATGCATAGATATCATGT 57.071 30.769 5.32 0.00 36.70 3.21
201 202 9.797642 TTTTTCCATGCATAGATATCATGTACT 57.202 29.630 5.32 0.00 36.70 2.73
202 203 9.797642 TTTTCCATGCATAGATATCATGTACTT 57.202 29.630 5.32 0.00 36.70 2.24
203 204 9.797642 TTTCCATGCATAGATATCATGTACTTT 57.202 29.630 5.32 0.00 36.70 2.66
204 205 9.440773 TTCCATGCATAGATATCATGTACTTTC 57.559 33.333 5.32 0.00 36.70 2.62
205 206 8.043113 TCCATGCATAGATATCATGTACTTTCC 58.957 37.037 5.32 0.00 36.70 3.13
206 207 7.010830 CCATGCATAGATATCATGTACTTTCCG 59.989 40.741 5.32 0.00 36.70 4.30
207 208 6.398095 TGCATAGATATCATGTACTTTCCGG 58.602 40.000 5.32 0.00 0.00 5.14
208 209 6.014584 TGCATAGATATCATGTACTTTCCGGT 60.015 38.462 0.00 0.00 0.00 5.28
209 210 6.531948 GCATAGATATCATGTACTTTCCGGTC 59.468 42.308 0.00 0.00 0.00 4.79
210 211 5.470047 AGATATCATGTACTTTCCGGTCC 57.530 43.478 0.00 0.00 0.00 4.46
211 212 4.283722 AGATATCATGTACTTTCCGGTCCC 59.716 45.833 0.00 0.00 0.00 4.46
212 213 1.646912 TCATGTACTTTCCGGTCCCA 58.353 50.000 0.00 0.00 0.00 4.37
213 214 1.979308 TCATGTACTTTCCGGTCCCAA 59.021 47.619 0.00 0.00 0.00 4.12
214 215 2.081462 CATGTACTTTCCGGTCCCAAC 58.919 52.381 0.00 0.00 0.00 3.77
215 216 1.129917 TGTACTTTCCGGTCCCAACA 58.870 50.000 0.00 0.00 0.00 3.33
216 217 1.700739 TGTACTTTCCGGTCCCAACAT 59.299 47.619 0.00 0.00 0.00 2.71
217 218 2.905085 TGTACTTTCCGGTCCCAACATA 59.095 45.455 0.00 0.00 0.00 2.29
218 219 3.327172 TGTACTTTCCGGTCCCAACATAA 59.673 43.478 0.00 0.00 0.00 1.90
219 220 3.067684 ACTTTCCGGTCCCAACATAAG 57.932 47.619 0.00 0.00 0.00 1.73
220 221 2.374170 ACTTTCCGGTCCCAACATAAGT 59.626 45.455 0.00 0.00 0.00 2.24
221 222 3.181437 ACTTTCCGGTCCCAACATAAGTT 60.181 43.478 0.00 0.00 38.88 2.66
256 257 9.965824 AAACTTAAGACACTTATTTTGTGATGG 57.034 29.630 10.09 0.00 38.65 3.51
257 258 8.918202 ACTTAAGACACTTATTTTGTGATGGA 57.082 30.769 10.09 0.00 38.65 3.41
258 259 9.003658 ACTTAAGACACTTATTTTGTGATGGAG 57.996 33.333 10.09 0.00 38.65 3.86
259 260 6.824305 AAGACACTTATTTTGTGATGGAGG 57.176 37.500 0.00 0.00 38.65 4.30
260 261 5.256474 AGACACTTATTTTGTGATGGAGGG 58.744 41.667 0.00 0.00 38.65 4.30
261 262 5.014123 AGACACTTATTTTGTGATGGAGGGA 59.986 40.000 0.00 0.00 38.65 4.20
268 269 8.893563 TTATTTTGTGATGGAGGGAGTATTTT 57.106 30.769 0.00 0.00 0.00 1.82
279 280 6.821665 TGGAGGGAGTATTTTATTTCTTCACG 59.178 38.462 0.00 0.00 0.00 4.35
323 324 3.785325 TGGACACCCAGATTTGATATCCA 59.215 43.478 0.00 0.00 37.58 3.41
327 328 6.324770 GGACACCCAGATTTGATATCCAAAAT 59.675 38.462 0.00 0.53 46.64 1.82
391 463 0.995024 ATGTAGAGGGCTTGGCACTT 59.005 50.000 0.00 0.00 45.08 3.16
394 466 0.324943 TAGAGGGCTTGGCACTTGAC 59.675 55.000 0.00 0.00 45.08 3.18
395 467 1.073897 GAGGGCTTGGCACTTGACT 59.926 57.895 0.00 0.00 45.08 3.41
396 468 0.538287 GAGGGCTTGGCACTTGACTT 60.538 55.000 0.00 0.00 45.08 3.01
397 469 0.106015 AGGGCTTGGCACTTGACTTT 60.106 50.000 0.00 0.00 40.61 2.66
427 504 1.706443 GCCGGCGATACTACCATTAC 58.294 55.000 12.58 0.00 0.00 1.89
438 520 8.066000 GCGATACTACCATTACCACAAATAAAC 58.934 37.037 0.00 0.00 0.00 2.01
442 524 7.809665 ACTACCATTACCACAAATAAACGAAC 58.190 34.615 0.00 0.00 0.00 3.95
504 590 2.005960 ATGCACGGAGCTACGAGACC 62.006 60.000 28.55 10.22 45.94 3.85
773 1648 6.094186 AGACAAAGGACAACACTTTTTCTCTC 59.906 38.462 0.00 0.00 39.48 3.20
1280 5743 0.638746 CGTGCGTTGGATTCGTAGTC 59.361 55.000 0.00 0.00 0.00 2.59
1315 5783 1.301954 GTCCGTTAATGGTGGCCCT 59.698 57.895 13.49 0.00 0.00 5.19
1316 5784 0.323087 GTCCGTTAATGGTGGCCCTT 60.323 55.000 13.49 0.00 0.00 3.95
1324 5792 2.917713 ATGGTGGCCCTTTTCATGTA 57.082 45.000 0.00 0.00 0.00 2.29
1325 5793 2.917713 TGGTGGCCCTTTTCATGTAT 57.082 45.000 0.00 0.00 0.00 2.29
1399 5870 2.523168 CCCCCACAACCCACAACC 60.523 66.667 0.00 0.00 0.00 3.77
1400 5871 2.523168 CCCCACAACCCACAACCC 60.523 66.667 0.00 0.00 0.00 4.11
1401 5872 2.280416 CCCACAACCCACAACCCA 59.720 61.111 0.00 0.00 0.00 4.51
1402 5873 2.131067 CCCACAACCCACAACCCAC 61.131 63.158 0.00 0.00 0.00 4.61
1403 5874 1.380515 CCACAACCCACAACCCACA 60.381 57.895 0.00 0.00 0.00 4.17
1404 5875 1.671901 CCACAACCCACAACCCACAC 61.672 60.000 0.00 0.00 0.00 3.82
1405 5876 0.682855 CACAACCCACAACCCACACT 60.683 55.000 0.00 0.00 0.00 3.55
1406 5877 0.395173 ACAACCCACAACCCACACTC 60.395 55.000 0.00 0.00 0.00 3.51
1407 5878 1.106944 CAACCCACAACCCACACTCC 61.107 60.000 0.00 0.00 0.00 3.85
1408 5879 2.115266 CCCACAACCCACACTCCC 59.885 66.667 0.00 0.00 0.00 4.30
1409 5880 2.762554 CCCACAACCCACACTCCCA 61.763 63.158 0.00 0.00 0.00 4.37
1410 5881 1.528309 CCACAACCCACACTCCCAC 60.528 63.158 0.00 0.00 0.00 4.61
1411 5882 1.225983 CACAACCCACACTCCCACA 59.774 57.895 0.00 0.00 0.00 4.17
1412 5883 0.178992 CACAACCCACACTCCCACAT 60.179 55.000 0.00 0.00 0.00 3.21
1413 5884 0.110486 ACAACCCACACTCCCACATC 59.890 55.000 0.00 0.00 0.00 3.06
1414 5885 0.609131 CAACCCACACTCCCACATCC 60.609 60.000 0.00 0.00 0.00 3.51
1415 5886 1.065410 AACCCACACTCCCACATCCA 61.065 55.000 0.00 0.00 0.00 3.41
1416 5887 1.002134 CCCACACTCCCACATCCAC 60.002 63.158 0.00 0.00 0.00 4.02
1417 5888 1.760527 CCACACTCCCACATCCACA 59.239 57.895 0.00 0.00 0.00 4.17
1418 5889 0.110295 CCACACTCCCACATCCACAA 59.890 55.000 0.00 0.00 0.00 3.33
1419 5890 1.238439 CACACTCCCACATCCACAAC 58.762 55.000 0.00 0.00 0.00 3.32
1420 5891 0.110486 ACACTCCCACATCCACAACC 59.890 55.000 0.00 0.00 0.00 3.77
1421 5892 0.609131 CACTCCCACATCCACAACCC 60.609 60.000 0.00 0.00 0.00 4.11
1422 5893 1.065410 ACTCCCACATCCACAACCCA 61.065 55.000 0.00 0.00 0.00 4.51
1423 5894 0.609131 CTCCCACATCCACAACCCAC 60.609 60.000 0.00 0.00 0.00 4.61
1424 5895 1.152599 CCCACATCCACAACCCACA 59.847 57.895 0.00 0.00 0.00 4.17
1425 5896 1.178534 CCCACATCCACAACCCACAC 61.179 60.000 0.00 0.00 0.00 3.82
1426 5897 0.467106 CCACATCCACAACCCACACA 60.467 55.000 0.00 0.00 0.00 3.72
1427 5898 0.667993 CACATCCACAACCCACACAC 59.332 55.000 0.00 0.00 0.00 3.82
1428 5899 0.467290 ACATCCACAACCCACACACC 60.467 55.000 0.00 0.00 0.00 4.16
1429 5900 1.228124 ATCCACAACCCACACACCG 60.228 57.895 0.00 0.00 0.00 4.94
1430 5901 1.701031 ATCCACAACCCACACACCGA 61.701 55.000 0.00 0.00 0.00 4.69
1431 5902 2.184167 CCACAACCCACACACCGAC 61.184 63.158 0.00 0.00 0.00 4.79
1432 5903 1.450491 CACAACCCACACACCGACA 60.450 57.895 0.00 0.00 0.00 4.35
1433 5904 1.450669 ACAACCCACACACCGACAC 60.451 57.895 0.00 0.00 0.00 3.67
1434 5905 2.184167 CAACCCACACACCGACACC 61.184 63.158 0.00 0.00 0.00 4.16
1435 5906 3.409605 AACCCACACACCGACACCC 62.410 63.158 0.00 0.00 0.00 4.61
1436 5907 3.867783 CCCACACACCGACACCCA 61.868 66.667 0.00 0.00 0.00 4.51
1454 5925 2.904866 CACCCACACCCACAACCG 60.905 66.667 0.00 0.00 0.00 4.44
1467 5938 1.021968 ACAACCGCAAACTGTTCCTC 58.978 50.000 0.00 0.00 0.00 3.71
1474 5945 2.807967 CGCAAACTGTTCCTCTCAATGA 59.192 45.455 0.00 0.00 0.00 2.57
1544 6023 8.868522 ATATATTGGGACCATGTTCAGTATTG 57.131 34.615 0.00 0.00 0.00 1.90
1573 6053 7.618117 TGATCAGTCTACCTTACCTTAACATCA 59.382 37.037 0.00 0.00 0.00 3.07
1574 6054 7.786046 TCAGTCTACCTTACCTTAACATCAA 57.214 36.000 0.00 0.00 0.00 2.57
1575 6055 8.197592 TCAGTCTACCTTACCTTAACATCAAA 57.802 34.615 0.00 0.00 0.00 2.69
1577 6057 8.095169 CAGTCTACCTTACCTTAACATCAAACT 58.905 37.037 0.00 0.00 0.00 2.66
2251 6815 3.243816 TCCAGAGTGGCAGCTGCA 61.244 61.111 37.63 22.06 44.36 4.41
2363 6939 9.601217 GTAAATACCTATCATTCAGACACTTGT 57.399 33.333 0.00 0.00 0.00 3.16
2543 7119 3.714798 TCCAAGTGTCCCAGGTATATTCC 59.285 47.826 0.00 0.00 0.00 3.01
2579 7155 8.962884 AAATAGCTTCTTTTGGACAATTTGTT 57.037 26.923 3.08 0.00 0.00 2.83
2890 7470 9.605275 TTATGTTTCTGAGTTGATTAGGATCTG 57.395 33.333 0.00 0.00 33.28 2.90
3307 7890 6.548441 ACATTTGTTCATGATTTTTGGCAG 57.452 33.333 0.00 0.00 0.00 4.85
3324 7907 5.664294 TGGCAGCATAACATCTTTCATTT 57.336 34.783 0.00 0.00 0.00 2.32
3358 7944 4.051922 CCTGAGGTGCGTAATCTAATGTC 58.948 47.826 0.00 0.00 0.00 3.06
3495 8081 2.375174 TCTTGCTGTGGATTACCCTGTT 59.625 45.455 0.00 0.00 35.38 3.16
3546 8132 3.006940 TGGTTCGGCTATGTTGACATTC 58.993 45.455 1.46 0.00 37.76 2.67
3967 8566 5.382303 CGTCTGTCGCTTGAAAATAATGTT 58.618 37.500 0.00 0.00 0.00 2.71
3968 8567 5.281376 CGTCTGTCGCTTGAAAATAATGTTG 59.719 40.000 0.00 0.00 0.00 3.33
4051 8650 0.465460 GTGGTGGCCTTGACACTGAA 60.465 55.000 3.32 0.00 42.03 3.02
4063 8662 6.464222 CCTTGACACTGAAGGTAATGAGTTA 58.536 40.000 0.00 0.00 36.05 2.24
4129 8728 0.957395 ATCACAAGAAGGCTGGTGCG 60.957 55.000 0.00 0.00 44.30 5.34
4170 8769 8.445275 TGTGTTCTCTTCTGCAAATTTACTTA 57.555 30.769 0.00 0.00 0.00 2.24
4197 8796 5.362263 ACATTGCATTGGATTTTATCTGGC 58.638 37.500 12.87 0.00 0.00 4.85
4214 8813 5.270893 TCTGGCTCGTTGCTAATTATACA 57.729 39.130 3.58 0.00 42.39 2.29
4671 9270 2.042686 TTGTTGTCAAGAGCTGCTGT 57.957 45.000 7.01 0.00 0.00 4.40
4794 9393 6.923670 AGAAGAGGGTATAGAAGGTATGTGA 58.076 40.000 0.00 0.00 0.00 3.58
4834 9434 9.512435 CTTACATTTATTCTTGGCATCTGAAAG 57.488 33.333 0.00 0.00 0.00 2.62
4864 9499 7.548097 CGCTGTATATACTGAATCCCTACAAT 58.452 38.462 20.42 0.00 0.00 2.71
4942 9581 5.702670 TGCTTCAACTAATCACTCTTTCTGG 59.297 40.000 0.00 0.00 0.00 3.86
5074 9713 2.026262 AGGCATACCACCTTCAACGAAT 60.026 45.455 0.00 0.00 39.06 3.34
5172 9811 7.233757 AGAGGTTAGTGTGAGAGTCATAGTTTT 59.766 37.037 0.00 0.00 0.00 2.43
5176 9815 6.426646 AGTGTGAGAGTCATAGTTTTCCTT 57.573 37.500 0.00 0.00 0.00 3.36
5457 10096 5.812642 CAGACATTGTCCTATCTGGTACAAC 59.187 44.000 13.14 0.00 38.06 3.32
5620 10259 1.196127 GTAACAAGAAACCCTTCCGCG 59.804 52.381 0.00 0.00 31.42 6.46
5666 10305 8.677300 GTCACTTGATATGTTGTTAATGACCAT 58.323 33.333 0.00 0.00 0.00 3.55
5670 10309 7.263100 TGATATGTTGTTAATGACCATGAGC 57.737 36.000 0.00 0.00 0.00 4.26
5693 10332 5.445010 GCGAAAAATGTTTTGGCTGATCATC 60.445 40.000 11.67 0.00 31.60 2.92
5694 10333 5.062558 CGAAAAATGTTTTGGCTGATCATCC 59.937 40.000 8.72 8.72 0.00 3.51
5697 10340 5.841957 AATGTTTTGGCTGATCATCCTAC 57.158 39.130 16.28 11.66 0.00 3.18
5710 10353 3.102972 TCATCCTACTTCTGCAGAGCTT 58.897 45.455 17.43 7.72 0.00 3.74
5773 10417 4.422073 TCAGGTGTCTTTGTGTCAGAAT 57.578 40.909 0.00 0.00 0.00 2.40
5774 10418 4.780815 TCAGGTGTCTTTGTGTCAGAATT 58.219 39.130 0.00 0.00 0.00 2.17
5829 10482 4.453819 GCAGATCAGTAATTATGCTGGGAC 59.546 45.833 0.00 0.00 39.49 4.46
6172 10825 1.045407 TCAACAGCGGTTACCAGTCT 58.955 50.000 0.75 0.00 34.87 3.24
6254 10907 0.621571 CCTCAAGGGTCTCATGGGGA 60.622 60.000 0.00 0.00 36.81 4.81
6350 11003 5.453339 GGTGAAGATCGACCCTTTCATATCA 60.453 44.000 3.75 0.00 0.00 2.15
6483 11150 6.130298 TGTTGTTGTTGTTGTAGATGAAGG 57.870 37.500 0.00 0.00 0.00 3.46
6561 11276 0.240945 AAACCTGCAGCGTACATTGC 59.759 50.000 8.66 10.73 40.67 3.56
6565 11280 3.994729 TGCAGCGTACATTGCAATC 57.005 47.368 9.53 0.00 46.42 2.67
6574 11289 4.260132 GCGTACATTGCAATCTTCTCTCTG 60.260 45.833 9.53 0.00 0.00 3.35
6576 11291 5.005203 CGTACATTGCAATCTTCTCTCTGTC 59.995 44.000 9.53 0.00 0.00 3.51
6648 11367 8.953223 AGAGTATAAATATTACTCCCTCCGTT 57.047 34.615 11.57 0.00 40.64 4.44
6649 11368 9.022884 AGAGTATAAATATTACTCCCTCCGTTC 57.977 37.037 11.57 0.00 40.64 3.95
6650 11369 8.131847 AGTATAAATATTACTCCCTCCGTTCC 57.868 38.462 0.00 0.00 0.00 3.62
6651 11370 7.731688 AGTATAAATATTACTCCCTCCGTTCCA 59.268 37.037 0.00 0.00 0.00 3.53
6652 11371 5.703730 AAATATTACTCCCTCCGTTCCAA 57.296 39.130 0.00 0.00 0.00 3.53
6653 11372 5.703730 AATATTACTCCCTCCGTTCCAAA 57.296 39.130 0.00 0.00 0.00 3.28
6654 11373 5.703730 ATATTACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
6655 11374 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
6656 11375 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
6657 11376 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6658 11377 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6659 11378 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6660 11379 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6661 11380 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6662 11381 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
6663 11382 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
6664 11383 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
6665 11384 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
6666 11385 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
6667 11386 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
6668 11387 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
6669 11388 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
6670 11389 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
6671 11390 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
6672 11391 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
6673 11392 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
6674 11393 7.893302 TCCAAAATAGATGACCCAACTTTGTAT 59.107 33.333 0.00 0.00 0.00 2.29
6675 11394 8.531146 CCAAAATAGATGACCCAACTTTGTATT 58.469 33.333 0.00 0.00 0.00 1.89
6680 11399 9.975218 ATAGATGACCCAACTTTGTATTAAAGT 57.025 29.630 0.00 0.00 41.82 2.66
6682 11401 9.802039 AGATGACCCAACTTTGTATTAAAGTTA 57.198 29.630 15.03 3.25 45.57 2.24
6684 11403 8.983702 TGACCCAACTTTGTATTAAAGTTAGT 57.016 30.769 15.03 14.80 45.57 2.24
6687 11406 9.850198 ACCCAACTTTGTATTAAAGTTAGTACA 57.150 29.630 15.03 3.15 45.57 2.90
6711 11430 9.696917 ACAAAGTTGAATCATCTATTTTGGAAC 57.303 29.630 10.86 0.00 40.04 3.62
6712 11431 8.853345 CAAAGTTGAATCATCTATTTTGGAACG 58.147 33.333 0.00 0.00 35.74 3.95
6713 11432 7.088589 AGTTGAATCATCTATTTTGGAACGG 57.911 36.000 0.00 0.00 0.00 4.44
6714 11433 6.884295 AGTTGAATCATCTATTTTGGAACGGA 59.116 34.615 0.00 0.00 0.00 4.69
6715 11434 6.925610 TGAATCATCTATTTTGGAACGGAG 57.074 37.500 0.00 0.00 0.00 4.63
6716 11435 5.822519 TGAATCATCTATTTTGGAACGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
6717 11436 4.150897 TCATCTATTTTGGAACGGAGGG 57.849 45.455 0.00 0.00 0.00 4.30
6718 11437 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6719 11438 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
7069 11846 5.253334 CACGTGCGTGTACAGTAAATTTA 57.747 39.130 15.60 0.00 40.91 1.40
7360 12248 2.939460 AGGTGTGTGCAACTTTTCAC 57.061 45.000 0.00 0.00 40.28 3.18
7361 12249 2.166829 AGGTGTGTGCAACTTTTCACA 58.833 42.857 1.75 1.75 40.28 3.58
7383 12271 3.584848 AGTGTTAGGACATTTGAGGAGCT 59.415 43.478 0.00 0.00 38.23 4.09
7397 12285 4.389374 TGAGGAGCTCGTGAAAAAGAAAT 58.611 39.130 14.78 0.00 32.35 2.17
7401 12289 6.573434 AGGAGCTCGTGAAAAAGAAATTTTT 58.427 32.000 8.40 0.00 41.27 1.94
7437 12325 9.261318 GAAACTTTGAAAAACTGCATTGTTTAC 57.739 29.630 4.67 3.96 38.98 2.01
7534 12422 9.871238 TCGAGCTTCTTAGATGTAAAATAGTTT 57.129 29.630 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 6.500684 AAATTCTTGAATATGCACGAGTGT 57.499 33.333 5.07 0.00 0.00 3.55
31 32 7.801547 AAAAATTCTTGAATATGCACGAGTG 57.198 32.000 0.00 0.00 0.00 3.51
55 56 8.599792 GGTGCCAAGGTCCTTATATAATACTAA 58.400 37.037 3.08 0.00 0.00 2.24
56 57 7.181485 GGGTGCCAAGGTCCTTATATAATACTA 59.819 40.741 3.08 0.00 0.00 1.82
57 58 6.012771 GGGTGCCAAGGTCCTTATATAATACT 60.013 42.308 3.08 0.00 0.00 2.12
58 59 6.178324 GGGTGCCAAGGTCCTTATATAATAC 58.822 44.000 3.08 0.00 0.00 1.89
59 60 5.046159 CGGGTGCCAAGGTCCTTATATAATA 60.046 44.000 3.08 0.00 0.00 0.98
60 61 4.263331 CGGGTGCCAAGGTCCTTATATAAT 60.263 45.833 3.08 0.00 0.00 1.28
61 62 3.071892 CGGGTGCCAAGGTCCTTATATAA 59.928 47.826 3.08 0.00 0.00 0.98
62 63 2.635915 CGGGTGCCAAGGTCCTTATATA 59.364 50.000 3.08 0.00 0.00 0.86
63 64 1.420138 CGGGTGCCAAGGTCCTTATAT 59.580 52.381 3.08 0.00 0.00 0.86
64 65 0.834612 CGGGTGCCAAGGTCCTTATA 59.165 55.000 3.08 0.00 0.00 0.98
65 66 0.912487 TCGGGTGCCAAGGTCCTTAT 60.912 55.000 3.08 0.00 0.00 1.73
66 67 1.536907 TCGGGTGCCAAGGTCCTTA 60.537 57.895 3.08 0.00 0.00 2.69
67 68 2.852075 TCGGGTGCCAAGGTCCTT 60.852 61.111 0.00 0.00 0.00 3.36
68 69 3.322466 CTCGGGTGCCAAGGTCCT 61.322 66.667 0.00 0.00 0.00 3.85
69 70 3.316573 CTCTCGGGTGCCAAGGTCC 62.317 68.421 0.00 0.00 0.00 4.46
70 71 2.266055 CTCTCGGGTGCCAAGGTC 59.734 66.667 0.00 0.00 0.00 3.85
71 72 4.021925 GCTCTCGGGTGCCAAGGT 62.022 66.667 0.00 0.00 0.00 3.50
72 73 3.672295 GAGCTCTCGGGTGCCAAGG 62.672 68.421 6.43 0.00 32.98 3.61
73 74 2.125350 GAGCTCTCGGGTGCCAAG 60.125 66.667 6.43 0.00 32.98 3.61
74 75 3.706373 GGAGCTCTCGGGTGCCAA 61.706 66.667 14.64 0.00 32.98 4.52
77 78 3.532155 ATCGGAGCTCTCGGGTGC 61.532 66.667 14.64 0.00 0.00 5.01
78 79 2.415010 CATCGGAGCTCTCGGGTG 59.585 66.667 14.64 13.20 35.28 4.61
79 80 3.532155 GCATCGGAGCTCTCGGGT 61.532 66.667 14.64 5.77 0.00 5.28
80 81 2.762006 GATGCATCGGAGCTCTCGGG 62.762 65.000 14.64 11.93 34.99 5.14
81 82 1.372748 GATGCATCGGAGCTCTCGG 60.373 63.158 14.64 3.65 34.99 4.63
82 83 0.387112 GAGATGCATCGGAGCTCTCG 60.387 60.000 20.67 15.31 32.94 4.04
83 84 0.672889 TGAGATGCATCGGAGCTCTC 59.327 55.000 20.67 12.15 38.31 3.20
84 85 1.001068 CATGAGATGCATCGGAGCTCT 59.999 52.381 20.67 1.84 34.15 4.09
85 86 1.430479 CATGAGATGCATCGGAGCTC 58.570 55.000 20.67 12.79 34.15 4.09
86 87 0.035036 CCATGAGATGCATCGGAGCT 59.965 55.000 20.67 2.83 34.15 4.09
87 88 0.034476 TCCATGAGATGCATCGGAGC 59.966 55.000 20.67 12.02 34.15 4.70
88 89 1.793258 GTCCATGAGATGCATCGGAG 58.207 55.000 20.67 11.86 35.94 4.63
89 90 0.032540 CGTCCATGAGATGCATCGGA 59.967 55.000 20.67 17.46 34.15 4.55
90 91 0.249615 ACGTCCATGAGATGCATCGG 60.250 55.000 20.67 15.47 34.15 4.18
91 92 1.575244 AACGTCCATGAGATGCATCG 58.425 50.000 20.67 9.65 34.15 3.84
92 93 5.473931 AGTATAACGTCCATGAGATGCATC 58.526 41.667 19.37 19.37 34.15 3.91
93 94 5.474578 AGTATAACGTCCATGAGATGCAT 57.525 39.130 0.00 0.00 37.85 3.96
94 95 4.937201 AGTATAACGTCCATGAGATGCA 57.063 40.909 0.00 0.00 34.56 3.96
95 96 5.162075 GGTAGTATAACGTCCATGAGATGC 58.838 45.833 0.00 0.00 34.56 3.91
96 97 6.016192 AGTGGTAGTATAACGTCCATGAGATG 60.016 42.308 0.00 0.00 37.53 2.90
97 98 6.069331 AGTGGTAGTATAACGTCCATGAGAT 58.931 40.000 0.00 0.00 31.30 2.75
98 99 5.443283 AGTGGTAGTATAACGTCCATGAGA 58.557 41.667 0.00 0.00 31.30 3.27
99 100 5.769484 AGTGGTAGTATAACGTCCATGAG 57.231 43.478 0.00 0.00 31.30 2.90
100 101 6.999871 TGATAGTGGTAGTATAACGTCCATGA 59.000 38.462 0.00 0.00 31.30 3.07
101 102 7.082602 GTGATAGTGGTAGTATAACGTCCATG 58.917 42.308 0.00 0.00 31.30 3.66
102 103 6.774170 TGTGATAGTGGTAGTATAACGTCCAT 59.226 38.462 0.00 0.00 31.30 3.41
103 104 6.121590 TGTGATAGTGGTAGTATAACGTCCA 58.878 40.000 0.00 0.00 0.00 4.02
104 105 6.624352 TGTGATAGTGGTAGTATAACGTCC 57.376 41.667 0.00 0.00 0.00 4.79
105 106 8.915871 TTTTGTGATAGTGGTAGTATAACGTC 57.084 34.615 0.00 0.00 0.00 4.34
131 132 9.991388 CACAATTCAACAACATTCATTCTTTTT 57.009 25.926 0.00 0.00 0.00 1.94
132 133 9.381033 TCACAATTCAACAACATTCATTCTTTT 57.619 25.926 0.00 0.00 0.00 2.27
133 134 8.945481 TCACAATTCAACAACATTCATTCTTT 57.055 26.923 0.00 0.00 0.00 2.52
134 135 8.984764 CATCACAATTCAACAACATTCATTCTT 58.015 29.630 0.00 0.00 0.00 2.52
135 136 8.361889 TCATCACAATTCAACAACATTCATTCT 58.638 29.630 0.00 0.00 0.00 2.40
136 137 8.430063 GTCATCACAATTCAACAACATTCATTC 58.570 33.333 0.00 0.00 0.00 2.67
137 138 7.927092 TGTCATCACAATTCAACAACATTCATT 59.073 29.630 0.00 0.00 0.00 2.57
138 139 7.435305 TGTCATCACAATTCAACAACATTCAT 58.565 30.769 0.00 0.00 0.00 2.57
139 140 6.803642 TGTCATCACAATTCAACAACATTCA 58.196 32.000 0.00 0.00 0.00 2.57
140 141 7.697352 TTGTCATCACAATTCAACAACATTC 57.303 32.000 0.00 0.00 37.61 2.67
141 142 8.665643 ATTTGTCATCACAATTCAACAACATT 57.334 26.923 0.00 0.00 42.28 2.71
142 143 8.145767 AGATTTGTCATCACAATTCAACAACAT 58.854 29.630 7.05 0.00 42.28 2.71
143 144 7.490840 AGATTTGTCATCACAATTCAACAACA 58.509 30.769 7.05 0.00 42.28 3.33
144 145 7.648908 TGAGATTTGTCATCACAATTCAACAAC 59.351 33.333 7.05 0.00 42.28 3.32
145 146 7.714703 TGAGATTTGTCATCACAATTCAACAA 58.285 30.769 7.05 0.00 42.28 2.83
146 147 7.274603 TGAGATTTGTCATCACAATTCAACA 57.725 32.000 7.05 4.40 42.28 3.33
147 148 8.578308 TTTGAGATTTGTCATCACAATTCAAC 57.422 30.769 7.05 2.29 42.28 3.18
148 149 9.414295 GATTTGAGATTTGTCATCACAATTCAA 57.586 29.630 7.05 4.40 42.28 2.69
149 150 8.799367 AGATTTGAGATTTGTCATCACAATTCA 58.201 29.630 7.05 0.00 42.28 2.57
150 151 9.635520 AAGATTTGAGATTTGTCATCACAATTC 57.364 29.630 0.00 0.00 42.28 2.17
151 152 9.991906 AAAGATTTGAGATTTGTCATCACAATT 57.008 25.926 0.00 0.00 42.28 2.32
152 153 9.991906 AAAAGATTTGAGATTTGTCATCACAAT 57.008 25.926 0.00 0.00 42.28 2.71
153 154 9.820725 AAAAAGATTTGAGATTTGTCATCACAA 57.179 25.926 0.00 0.00 40.97 3.33
154 155 9.467258 GAAAAAGATTTGAGATTTGTCATCACA 57.533 29.630 0.00 0.00 0.00 3.58
155 156 8.919661 GGAAAAAGATTTGAGATTTGTCATCAC 58.080 33.333 0.00 0.00 0.00 3.06
156 157 8.640651 TGGAAAAAGATTTGAGATTTGTCATCA 58.359 29.630 0.00 0.00 0.00 3.07
157 158 9.649167 ATGGAAAAAGATTTGAGATTTGTCATC 57.351 29.630 0.00 0.00 0.00 2.92
158 159 9.431887 CATGGAAAAAGATTTGAGATTTGTCAT 57.568 29.630 0.00 0.00 0.00 3.06
159 160 7.385752 GCATGGAAAAAGATTTGAGATTTGTCA 59.614 33.333 0.00 0.00 0.00 3.58
160 161 7.385752 TGCATGGAAAAAGATTTGAGATTTGTC 59.614 33.333 0.00 0.00 0.00 3.18
161 162 7.218614 TGCATGGAAAAAGATTTGAGATTTGT 58.781 30.769 0.00 0.00 0.00 2.83
162 163 7.661127 TGCATGGAAAAAGATTTGAGATTTG 57.339 32.000 0.00 0.00 0.00 2.32
163 164 9.595823 CTATGCATGGAAAAAGATTTGAGATTT 57.404 29.630 10.16 0.00 0.00 2.17
164 165 8.974238 TCTATGCATGGAAAAAGATTTGAGATT 58.026 29.630 10.73 0.00 0.00 2.40
165 166 8.529424 TCTATGCATGGAAAAAGATTTGAGAT 57.471 30.769 10.73 0.00 0.00 2.75
166 167 7.943079 TCTATGCATGGAAAAAGATTTGAGA 57.057 32.000 10.73 0.00 0.00 3.27
172 173 9.529823 ACATGATATCTATGCATGGAAAAAGAT 57.470 29.630 17.30 13.78 42.70 2.40
173 174 8.929260 ACATGATATCTATGCATGGAAAAAGA 57.071 30.769 17.30 6.95 42.70 2.52
175 176 9.797642 AGTACATGATATCTATGCATGGAAAAA 57.202 29.630 17.30 6.24 42.70 1.94
176 177 9.797642 AAGTACATGATATCTATGCATGGAAAA 57.202 29.630 17.30 8.75 42.70 2.29
177 178 9.797642 AAAGTACATGATATCTATGCATGGAAA 57.202 29.630 17.30 3.92 42.70 3.13
178 179 9.440773 GAAAGTACATGATATCTATGCATGGAA 57.559 33.333 17.30 7.07 42.70 3.53
179 180 8.043113 GGAAAGTACATGATATCTATGCATGGA 58.957 37.037 15.69 15.69 42.70 3.41
180 181 7.010830 CGGAAAGTACATGATATCTATGCATGG 59.989 40.741 10.16 6.58 42.70 3.66
181 182 7.010830 CCGGAAAGTACATGATATCTATGCATG 59.989 40.741 10.16 0.00 43.70 4.06
182 183 7.044181 CCGGAAAGTACATGATATCTATGCAT 58.956 38.462 3.79 3.79 0.00 3.96
183 184 6.014584 ACCGGAAAGTACATGATATCTATGCA 60.015 38.462 9.46 0.00 0.00 3.96
184 185 6.398918 ACCGGAAAGTACATGATATCTATGC 58.601 40.000 9.46 0.00 0.00 3.14
185 186 7.036220 GGACCGGAAAGTACATGATATCTATG 58.964 42.308 9.46 8.58 0.00 2.23
186 187 6.154706 GGGACCGGAAAGTACATGATATCTAT 59.845 42.308 9.46 0.00 0.00 1.98
187 188 5.479375 GGGACCGGAAAGTACATGATATCTA 59.521 44.000 9.46 0.00 0.00 1.98
188 189 4.283722 GGGACCGGAAAGTACATGATATCT 59.716 45.833 9.46 0.00 0.00 1.98
189 190 4.039973 TGGGACCGGAAAGTACATGATATC 59.960 45.833 9.46 0.00 0.00 1.63
190 191 3.971305 TGGGACCGGAAAGTACATGATAT 59.029 43.478 9.46 0.00 0.00 1.63
191 192 3.376636 TGGGACCGGAAAGTACATGATA 58.623 45.455 9.46 0.00 0.00 2.15
192 193 2.193127 TGGGACCGGAAAGTACATGAT 58.807 47.619 9.46 0.00 0.00 2.45
193 194 1.646912 TGGGACCGGAAAGTACATGA 58.353 50.000 9.46 0.00 0.00 3.07
194 195 2.081462 GTTGGGACCGGAAAGTACATG 58.919 52.381 9.46 0.00 0.00 3.21
195 196 1.700739 TGTTGGGACCGGAAAGTACAT 59.299 47.619 9.46 0.00 0.00 2.29
196 197 1.129917 TGTTGGGACCGGAAAGTACA 58.870 50.000 9.46 3.71 0.00 2.90
197 198 2.484742 ATGTTGGGACCGGAAAGTAC 57.515 50.000 9.46 0.65 0.00 2.73
198 199 3.583966 ACTTATGTTGGGACCGGAAAGTA 59.416 43.478 9.46 0.00 0.00 2.24
199 200 2.374170 ACTTATGTTGGGACCGGAAAGT 59.626 45.455 9.46 0.52 0.00 2.66
200 201 3.067684 ACTTATGTTGGGACCGGAAAG 57.932 47.619 9.46 0.00 0.00 2.62
201 202 3.512219 AACTTATGTTGGGACCGGAAA 57.488 42.857 9.46 0.00 34.71 3.13
230 231 9.965824 CCATCACAAAATAAGTGTCTTAAGTTT 57.034 29.630 1.63 0.00 38.16 2.66
231 232 9.349713 TCCATCACAAAATAAGTGTCTTAAGTT 57.650 29.630 1.63 0.00 38.16 2.66
232 233 8.918202 TCCATCACAAAATAAGTGTCTTAAGT 57.082 30.769 1.63 0.00 38.16 2.24
233 234 8.454106 CCTCCATCACAAAATAAGTGTCTTAAG 58.546 37.037 0.00 0.00 38.16 1.85
234 235 7.393234 CCCTCCATCACAAAATAAGTGTCTTAA 59.607 37.037 0.00 0.00 38.16 1.85
235 236 6.884295 CCCTCCATCACAAAATAAGTGTCTTA 59.116 38.462 0.00 0.00 38.16 2.10
236 237 5.711976 CCCTCCATCACAAAATAAGTGTCTT 59.288 40.000 0.00 0.00 38.16 3.01
237 238 5.014123 TCCCTCCATCACAAAATAAGTGTCT 59.986 40.000 0.00 0.00 38.16 3.41
238 239 5.253330 TCCCTCCATCACAAAATAAGTGTC 58.747 41.667 0.00 0.00 38.16 3.67
239 240 5.222130 ACTCCCTCCATCACAAAATAAGTGT 60.222 40.000 0.00 0.00 38.16 3.55
240 241 5.256474 ACTCCCTCCATCACAAAATAAGTG 58.744 41.667 0.00 0.00 38.32 3.16
241 242 5.520748 ACTCCCTCCATCACAAAATAAGT 57.479 39.130 0.00 0.00 0.00 2.24
242 243 8.525290 AAATACTCCCTCCATCACAAAATAAG 57.475 34.615 0.00 0.00 0.00 1.73
243 244 8.893563 AAAATACTCCCTCCATCACAAAATAA 57.106 30.769 0.00 0.00 0.00 1.40
245 246 9.492730 AATAAAATACTCCCTCCATCACAAAAT 57.507 29.630 0.00 0.00 0.00 1.82
246 247 8.893563 AATAAAATACTCCCTCCATCACAAAA 57.106 30.769 0.00 0.00 0.00 2.44
247 248 8.893563 AAATAAAATACTCCCTCCATCACAAA 57.106 30.769 0.00 0.00 0.00 2.83
248 249 8.336235 AGAAATAAAATACTCCCTCCATCACAA 58.664 33.333 0.00 0.00 0.00 3.33
249 250 7.872138 AGAAATAAAATACTCCCTCCATCACA 58.128 34.615 0.00 0.00 0.00 3.58
250 251 8.753497 AAGAAATAAAATACTCCCTCCATCAC 57.247 34.615 0.00 0.00 0.00 3.06
251 252 8.556589 TGAAGAAATAAAATACTCCCTCCATCA 58.443 33.333 0.00 0.00 0.00 3.07
252 253 8.841300 GTGAAGAAATAAAATACTCCCTCCATC 58.159 37.037 0.00 0.00 0.00 3.51
253 254 7.499232 CGTGAAGAAATAAAATACTCCCTCCAT 59.501 37.037 0.00 0.00 0.00 3.41
254 255 6.821665 CGTGAAGAAATAAAATACTCCCTCCA 59.178 38.462 0.00 0.00 0.00 3.86
255 256 7.046033 TCGTGAAGAAATAAAATACTCCCTCC 58.954 38.462 0.00 0.00 0.00 4.30
256 257 8.488651 TTCGTGAAGAAATAAAATACTCCCTC 57.511 34.615 0.00 0.00 35.61 4.30
257 258 8.857694 TTTCGTGAAGAAATAAAATACTCCCT 57.142 30.769 0.00 0.00 43.35 4.20
279 280 8.874816 GTCCATTCTACTCTCATGTTTAGTTTC 58.125 37.037 0.00 0.00 0.00 2.78
290 291 3.099905 CTGGGTGTCCATTCTACTCTCA 58.900 50.000 0.00 0.00 43.11 3.27
368 375 2.880890 GTGCCAAGCCCTCTACATAATG 59.119 50.000 0.00 0.00 0.00 1.90
374 446 0.324943 TCAAGTGCCAAGCCCTCTAC 59.675 55.000 0.00 0.00 0.00 2.59
377 449 0.538287 AAGTCAAGTGCCAAGCCCTC 60.538 55.000 0.00 0.00 0.00 4.30
378 450 0.106015 AAAGTCAAGTGCCAAGCCCT 60.106 50.000 0.00 0.00 0.00 5.19
381 453 2.669364 CATGAAAGTCAAGTGCCAAGC 58.331 47.619 0.00 0.00 0.00 4.01
427 504 5.683743 ACAACATTCGTTCGTTTATTTGTGG 59.316 36.000 0.00 0.00 31.13 4.17
438 520 3.181564 CGCATTTCAACAACATTCGTTCG 60.182 43.478 0.00 0.00 31.13 3.95
442 524 4.029418 GTCATCGCATTTCAACAACATTCG 59.971 41.667 0.00 0.00 0.00 3.34
504 590 0.179081 GGGGGTCGGAATCTTCTTCG 60.179 60.000 0.00 0.00 0.00 3.79
730 902 3.181465 TGTCTCCTATTTCAGCGATTCCC 60.181 47.826 0.00 0.00 0.00 3.97
773 1648 4.774124 TCCTATCTTGTCATGGCAAAGAG 58.226 43.478 14.69 10.73 0.00 2.85
827 5188 1.376942 AGCTCGCTTCTGCAATGCT 60.377 52.632 6.82 0.00 39.64 3.79
989 5378 3.880846 CCGCCATCTTTCCGCTGC 61.881 66.667 0.00 0.00 0.00 5.25
990 5379 3.880846 GCCGCCATCTTTCCGCTG 61.881 66.667 0.00 0.00 0.00 5.18
1280 5743 1.937546 GACAGGGGAAATGCGGCAAG 61.938 60.000 6.82 0.00 0.00 4.01
1315 5783 5.447144 CGCTCGTCAATTCCATACATGAAAA 60.447 40.000 0.00 0.00 0.00 2.29
1316 5784 4.033932 CGCTCGTCAATTCCATACATGAAA 59.966 41.667 0.00 0.00 0.00 2.69
1324 5792 0.744414 CCACCGCTCGTCAATTCCAT 60.744 55.000 0.00 0.00 0.00 3.41
1325 5793 1.375396 CCACCGCTCGTCAATTCCA 60.375 57.895 0.00 0.00 0.00 3.53
1397 5868 1.463214 TGGATGTGGGAGTGTGGGT 60.463 57.895 0.00 0.00 0.00 4.51
1398 5869 1.002134 GTGGATGTGGGAGTGTGGG 60.002 63.158 0.00 0.00 0.00 4.61
1399 5870 0.110295 TTGTGGATGTGGGAGTGTGG 59.890 55.000 0.00 0.00 0.00 4.17
1400 5871 1.238439 GTTGTGGATGTGGGAGTGTG 58.762 55.000 0.00 0.00 0.00 3.82
1401 5872 0.110486 GGTTGTGGATGTGGGAGTGT 59.890 55.000 0.00 0.00 0.00 3.55
1402 5873 0.609131 GGGTTGTGGATGTGGGAGTG 60.609 60.000 0.00 0.00 0.00 3.51
1403 5874 1.065410 TGGGTTGTGGATGTGGGAGT 61.065 55.000 0.00 0.00 0.00 3.85
1404 5875 0.609131 GTGGGTTGTGGATGTGGGAG 60.609 60.000 0.00 0.00 0.00 4.30
1405 5876 1.356494 TGTGGGTTGTGGATGTGGGA 61.356 55.000 0.00 0.00 0.00 4.37
1406 5877 1.152599 TGTGGGTTGTGGATGTGGG 59.847 57.895 0.00 0.00 0.00 4.61
1407 5878 0.467106 TGTGTGGGTTGTGGATGTGG 60.467 55.000 0.00 0.00 0.00 4.17
1408 5879 0.667993 GTGTGTGGGTTGTGGATGTG 59.332 55.000 0.00 0.00 0.00 3.21
1409 5880 0.467290 GGTGTGTGGGTTGTGGATGT 60.467 55.000 0.00 0.00 0.00 3.06
1410 5881 1.514678 CGGTGTGTGGGTTGTGGATG 61.515 60.000 0.00 0.00 0.00 3.51
1411 5882 1.228124 CGGTGTGTGGGTTGTGGAT 60.228 57.895 0.00 0.00 0.00 3.41
1412 5883 2.190843 CGGTGTGTGGGTTGTGGA 59.809 61.111 0.00 0.00 0.00 4.02
1413 5884 2.184167 GTCGGTGTGTGGGTTGTGG 61.184 63.158 0.00 0.00 0.00 4.17
1414 5885 1.450491 TGTCGGTGTGTGGGTTGTG 60.450 57.895 0.00 0.00 0.00 3.33
1415 5886 1.450669 GTGTCGGTGTGTGGGTTGT 60.451 57.895 0.00 0.00 0.00 3.32
1416 5887 2.184167 GGTGTCGGTGTGTGGGTTG 61.184 63.158 0.00 0.00 0.00 3.77
1417 5888 2.191109 GGTGTCGGTGTGTGGGTT 59.809 61.111 0.00 0.00 0.00 4.11
1418 5889 3.868985 GGGTGTCGGTGTGTGGGT 61.869 66.667 0.00 0.00 0.00 4.51
1419 5890 3.867783 TGGGTGTCGGTGTGTGGG 61.868 66.667 0.00 0.00 0.00 4.61
1420 5891 2.590575 GTGGGTGTCGGTGTGTGG 60.591 66.667 0.00 0.00 0.00 4.17
1421 5892 2.177580 GTGTGGGTGTCGGTGTGTG 61.178 63.158 0.00 0.00 0.00 3.82
1422 5893 2.188469 GTGTGGGTGTCGGTGTGT 59.812 61.111 0.00 0.00 0.00 3.72
1423 5894 2.590575 GGTGTGGGTGTCGGTGTG 60.591 66.667 0.00 0.00 0.00 3.82
1424 5895 3.868985 GGGTGTGGGTGTCGGTGT 61.869 66.667 0.00 0.00 0.00 4.16
1425 5896 3.867783 TGGGTGTGGGTGTCGGTG 61.868 66.667 0.00 0.00 0.00 4.94
1426 5897 3.868985 GTGGGTGTGGGTGTCGGT 61.869 66.667 0.00 0.00 0.00 4.69
1427 5898 3.867783 TGTGGGTGTGGGTGTCGG 61.868 66.667 0.00 0.00 0.00 4.79
1428 5899 2.590575 GTGTGGGTGTGGGTGTCG 60.591 66.667 0.00 0.00 0.00 4.35
1429 5900 2.203294 GGTGTGGGTGTGGGTGTC 60.203 66.667 0.00 0.00 0.00 3.67
1430 5901 3.816090 GGGTGTGGGTGTGGGTGT 61.816 66.667 0.00 0.00 0.00 4.16
1431 5902 3.814906 TGGGTGTGGGTGTGGGTG 61.815 66.667 0.00 0.00 0.00 4.61
1432 5903 3.816090 GTGGGTGTGGGTGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
1433 5904 3.366406 TTGTGGGTGTGGGTGTGGG 62.366 63.158 0.00 0.00 0.00 4.61
1434 5905 2.124693 GTTGTGGGTGTGGGTGTGG 61.125 63.158 0.00 0.00 0.00 4.17
1435 5906 2.124693 GGTTGTGGGTGTGGGTGTG 61.125 63.158 0.00 0.00 0.00 3.82
1436 5907 2.277404 GGTTGTGGGTGTGGGTGT 59.723 61.111 0.00 0.00 0.00 4.16
1454 5925 3.565482 TGTCATTGAGAGGAACAGTTTGC 59.435 43.478 0.00 0.00 0.00 3.68
1573 6053 3.897239 TCGGGAATGGCATGAATAGTTT 58.103 40.909 0.00 0.00 0.00 2.66
1574 6054 3.576078 TCGGGAATGGCATGAATAGTT 57.424 42.857 0.00 0.00 0.00 2.24
1575 6055 3.795688 ATCGGGAATGGCATGAATAGT 57.204 42.857 0.00 0.00 0.00 2.12
1577 6057 4.039004 CCAAAATCGGGAATGGCATGAATA 59.961 41.667 0.00 0.00 0.00 1.75
1985 6498 3.944015 GCAGAAAGCAGACTTCCATATGT 59.056 43.478 1.24 0.00 44.79 2.29
2251 6815 3.251484 TCAATGTCTTCTCCTTGACCCT 58.749 45.455 0.00 0.00 32.67 4.34
2571 7147 7.646446 TTTCATCAGATGAGCAAACAAATTG 57.354 32.000 12.97 0.00 40.94 2.32
3324 7907 3.430236 CGCACCTCAGGACACATAATGTA 60.430 47.826 0.00 0.00 43.56 2.29
3358 7944 0.898320 CCCTCCCTATCATACCTGCG 59.102 60.000 0.00 0.00 0.00 5.18
3880 8468 0.324275 GGTTATTCCCAGGCCAAGCA 60.324 55.000 5.01 0.00 0.00 3.91
4063 8662 2.573462 AGAGACATACACAAGCCATGGT 59.427 45.455 14.67 0.00 0.00 3.55
4067 8666 1.893137 ACGAGAGACATACACAAGCCA 59.107 47.619 0.00 0.00 0.00 4.75
4129 8728 4.637534 AGAACACATACCAGTGCATTCATC 59.362 41.667 0.00 0.00 43.23 2.92
4170 8769 8.145767 CCAGATAAAATCCAATGCAATGTACAT 58.854 33.333 1.41 1.41 0.00 2.29
4214 8813 5.568624 GCCAACCAGCAAAAGGTATGTAATT 60.569 40.000 0.00 0.00 38.76 1.40
4671 9270 2.362077 GCTCTTTTTCTTTCTGCCACCA 59.638 45.455 0.00 0.00 0.00 4.17
4834 9434 4.092091 GGATTCAGTATATACAGCGCTTGC 59.908 45.833 7.50 0.00 39.58 4.01
5074 9713 3.484953 TCCTTTAGTAGGGAAGCTGGA 57.515 47.619 0.00 0.00 44.86 3.86
5194 9833 5.592104 TCCAGTTTCGTATCTCAGCATAA 57.408 39.130 0.00 0.00 0.00 1.90
5457 10096 1.301874 TTTCAACCGCCCACCGTAG 60.302 57.895 0.00 0.00 34.38 3.51
5666 10305 3.122297 CAGCCAAAACATTTTTCGCTCA 58.878 40.909 1.14 0.00 33.35 4.26
5670 10309 5.062558 GGATGATCAGCCAAAACATTTTTCG 59.937 40.000 25.01 0.00 36.74 3.46
5693 10332 3.051081 ACAAAGCTCTGCAGAAGTAGG 57.949 47.619 18.85 6.71 0.00 3.18
5694 10333 3.434984 GGAACAAAGCTCTGCAGAAGTAG 59.565 47.826 18.85 7.12 0.00 2.57
5697 10340 2.483491 GAGGAACAAAGCTCTGCAGAAG 59.517 50.000 18.85 12.76 0.00 2.85
5710 10353 5.060506 TGCGAGATTTAACAAGAGGAACAA 58.939 37.500 0.00 0.00 0.00 2.83
5803 10456 5.106277 CCCAGCATAATTACTGATCTGCATG 60.106 44.000 8.70 0.00 35.90 4.06
5829 10482 6.967199 GGAGGCAAACATAAGAATAAAGAACG 59.033 38.462 0.00 0.00 0.00 3.95
5962 10615 1.451504 CAGACCCTGGAACACTGCA 59.548 57.895 0.00 0.00 0.00 4.41
6127 10780 4.784177 CATATGATATGCCTGCCACCATA 58.216 43.478 0.00 0.00 0.00 2.74
6172 10825 0.765135 TTCCGAAGAGTGGACCCCAA 60.765 55.000 0.00 0.00 34.18 4.12
6254 10907 3.660111 GGCGTGCGGTTCTGCTTT 61.660 61.111 5.23 0.00 35.36 3.51
6350 11003 0.460311 CGACGGCTTTCTGGGTATCT 59.540 55.000 0.00 0.00 0.00 1.98
6483 11150 6.422701 GGGGCAATAATTTAATAAAACTCCGC 59.577 38.462 0.00 0.00 0.00 5.54
6518 11193 5.658190 TCGTAGGCAAGGGTACTAAATACTT 59.342 40.000 0.00 0.00 33.87 2.24
6519 11194 5.203528 TCGTAGGCAAGGGTACTAAATACT 58.796 41.667 0.00 0.00 33.87 2.12
6520 11195 5.520376 TCGTAGGCAAGGGTACTAAATAC 57.480 43.478 0.00 0.00 0.00 1.89
6521 11196 6.340522 GTTTCGTAGGCAAGGGTACTAAATA 58.659 40.000 0.00 0.00 0.00 1.40
6522 11197 5.181009 GTTTCGTAGGCAAGGGTACTAAAT 58.819 41.667 0.00 0.00 0.00 1.40
6523 11198 4.563374 GGTTTCGTAGGCAAGGGTACTAAA 60.563 45.833 0.00 0.00 0.00 1.85
6524 11199 3.055891 GGTTTCGTAGGCAAGGGTACTAA 60.056 47.826 0.00 0.00 0.00 2.24
6561 11276 7.331687 GGAAAAAGAGAGACAGAGAGAAGATTG 59.668 40.741 0.00 0.00 0.00 2.67
6562 11277 7.016072 TGGAAAAAGAGAGACAGAGAGAAGATT 59.984 37.037 0.00 0.00 0.00 2.40
6565 11280 6.095432 TGGAAAAAGAGAGACAGAGAGAAG 57.905 41.667 0.00 0.00 0.00 2.85
6574 11289 6.015940 ACCATCACAAATGGAAAAAGAGAGAC 60.016 38.462 10.91 0.00 41.64 3.36
6576 11291 6.336842 ACCATCACAAATGGAAAAAGAGAG 57.663 37.500 10.91 0.00 41.64 3.20
6631 11350 5.703730 TTTGGAACGGAGGGAGTAATATT 57.296 39.130 0.00 0.00 0.00 1.28
6632 11351 5.703730 TTTTGGAACGGAGGGAGTAATAT 57.296 39.130 0.00 0.00 0.00 1.28
6633 11352 5.703730 ATTTTGGAACGGAGGGAGTAATA 57.296 39.130 0.00 0.00 0.00 0.98
6634 11353 4.586306 ATTTTGGAACGGAGGGAGTAAT 57.414 40.909 0.00 0.00 0.00 1.89
6635 11354 4.778958 TCTATTTTGGAACGGAGGGAGTAA 59.221 41.667 0.00 0.00 0.00 2.24
6636 11355 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
6637 11356 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
6638 11357 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
6639 11358 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
6640 11359 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
6641 11360 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
6642 11361 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
6643 11362 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
6644 11363 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
6645 11364 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
6646 11365 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
6647 11366 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
6648 11367 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
6649 11368 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
6654 11373 9.975218 ACTTTAATACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 37.18 1.98
6655 11374 9.802039 AACTTTAATACAAAGTTGGGTCATCTA 57.198 29.630 12.88 0.00 45.58 1.98
6656 11375 8.706322 AACTTTAATACAAAGTTGGGTCATCT 57.294 30.769 12.88 0.00 45.58 2.90
6658 11377 9.582648 ACTAACTTTAATACAAAGTTGGGTCAT 57.417 29.630 21.95 6.17 46.38 3.06
6659 11378 8.983702 ACTAACTTTAATACAAAGTTGGGTCA 57.016 30.769 21.95 6.46 46.38 4.02
6661 11380 9.850198 TGTACTAACTTTAATACAAAGTTGGGT 57.150 29.630 21.95 19.76 46.38 4.51
6685 11404 9.696917 GTTCCAAAATAGATGATTCAACTTTGT 57.303 29.630 1.47 0.00 0.00 2.83
6686 11405 8.853345 CGTTCCAAAATAGATGATTCAACTTTG 58.147 33.333 1.47 1.65 0.00 2.77
6687 11406 8.028938 CCGTTCCAAAATAGATGATTCAACTTT 58.971 33.333 1.47 0.00 0.00 2.66
6688 11407 7.393234 TCCGTTCCAAAATAGATGATTCAACTT 59.607 33.333 1.47 0.00 0.00 2.66
6689 11408 6.884295 TCCGTTCCAAAATAGATGATTCAACT 59.116 34.615 1.83 1.83 0.00 3.16
6690 11409 7.083875 TCCGTTCCAAAATAGATGATTCAAC 57.916 36.000 0.00 0.00 0.00 3.18
6691 11410 6.318648 CCTCCGTTCCAAAATAGATGATTCAA 59.681 38.462 0.00 0.00 0.00 2.69
6692 11411 5.822519 CCTCCGTTCCAAAATAGATGATTCA 59.177 40.000 0.00 0.00 0.00 2.57
6693 11412 5.239525 CCCTCCGTTCCAAAATAGATGATTC 59.760 44.000 0.00 0.00 0.00 2.52
6694 11413 5.104109 TCCCTCCGTTCCAAAATAGATGATT 60.104 40.000 0.00 0.00 0.00 2.57
6695 11414 4.412199 TCCCTCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
6696 11415 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
6697 11416 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
6698 11417 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
6699 11418 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
6700 11419 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
6701 11420 4.472108 ACATACTCCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
6702 11421 3.265995 ACATACTCCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
6703 11422 2.640826 ACATACTCCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
6704 11423 2.235402 GACATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
6705 11424 1.829222 GACATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
6706 11425 1.272816 TGACATACTCCCTCCGTTCCA 60.273 52.381 0.00 0.00 0.00 3.53
6707 11426 1.409427 CTGACATACTCCCTCCGTTCC 59.591 57.143 0.00 0.00 0.00 3.62
6708 11427 2.376109 TCTGACATACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
6709 11428 2.496470 GTTCTGACATACTCCCTCCGTT 59.504 50.000 0.00 0.00 0.00 4.44
6710 11429 2.100989 GTTCTGACATACTCCCTCCGT 58.899 52.381 0.00 0.00 0.00 4.69
6711 11430 1.065701 CGTTCTGACATACTCCCTCCG 59.934 57.143 0.00 0.00 0.00 4.63
6712 11431 2.100989 ACGTTCTGACATACTCCCTCC 58.899 52.381 0.00 0.00 0.00 4.30
6713 11432 5.517322 AATACGTTCTGACATACTCCCTC 57.483 43.478 0.00 0.00 0.00 4.30
6714 11433 5.934402 AAATACGTTCTGACATACTCCCT 57.066 39.130 0.00 0.00 0.00 4.20
6715 11434 8.355169 TGTATAAATACGTTCTGACATACTCCC 58.645 37.037 0.00 0.00 36.06 4.30
6716 11435 9.178427 GTGTATAAATACGTTCTGACATACTCC 57.822 37.037 0.00 0.00 36.06 3.85
6717 11436 9.726232 TGTGTATAAATACGTTCTGACATACTC 57.274 33.333 0.00 0.00 36.06 2.59
6718 11437 9.512435 GTGTGTATAAATACGTTCTGACATACT 57.488 33.333 0.00 0.00 36.06 2.12
6719 11438 9.512435 AGTGTGTATAAATACGTTCTGACATAC 57.488 33.333 0.00 0.21 36.06 2.39
6748 11468 9.408648 AGCTGCCTTATATAAATAGTTTGTGTT 57.591 29.630 0.00 0.00 0.00 3.32
6810 11576 5.535333 CATGACAATTCATATTCCTTGGCC 58.465 41.667 0.00 0.00 40.79 5.36
7323 12100 0.520404 CTTGCGCACTCAAGCATCTT 59.480 50.000 11.12 0.00 43.42 2.40
7324 12101 1.303799 CCTTGCGCACTCAAGCATCT 61.304 55.000 11.12 0.00 43.42 2.90
7325 12102 1.136147 CCTTGCGCACTCAAGCATC 59.864 57.895 11.12 0.00 43.42 3.91
7326 12103 1.601759 ACCTTGCGCACTCAAGCAT 60.602 52.632 11.12 0.00 43.42 3.79
7327 12104 2.203195 ACCTTGCGCACTCAAGCA 60.203 55.556 11.12 0.00 41.47 3.91
7328 12105 2.253452 CACCTTGCGCACTCAAGC 59.747 61.111 11.12 0.00 41.47 4.01
7329 12106 1.280746 CACACCTTGCGCACTCAAG 59.719 57.895 11.12 4.29 42.23 3.02
7330 12107 1.451207 ACACACCTTGCGCACTCAA 60.451 52.632 11.12 0.00 0.00 3.02
7331 12108 2.179547 CACACACCTTGCGCACTCA 61.180 57.895 11.12 0.00 0.00 3.41
7332 12109 2.633657 CACACACCTTGCGCACTC 59.366 61.111 11.12 0.00 0.00 3.51
7360 12248 3.686726 GCTCCTCAAATGTCCTAACACTG 59.313 47.826 0.00 0.00 38.48 3.66
7361 12249 3.584848 AGCTCCTCAAATGTCCTAACACT 59.415 43.478 0.00 0.00 38.48 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.