AutoCloner

Multiple sequence alignment - TraesCS1A01G116100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1A01G116100	chr1A	100.000	2895	0	0	1	2895	121566788	121569682	0.000000e+00	5347.0
1	TraesCS1A01G116100	chr1A	85.526	380	39	9	1529	1897	120378648	120379022	1.630000e-102	383.0
2	TraesCS1A01G116100	chr1A	94.850	233	12	0	1531	1763	120364829	120365061	5.900000e-97	364.0
3	TraesCS1A01G116100	chr1A	84.091	132	17	3	1280	1409	120364246	120364375	1.090000e-24	124.0
4	TraesCS1A01G116100	chr1A	83.721	129	17	3	1283	1409	120376353	120376479	5.070000e-23	119.0
5	TraesCS1A01G116100	chr1D	94.250	1426	61	11	1491	2895	113848534	113849959	0.000000e+00	2159.0
6	TraesCS1A01G116100	chr1D	94.397	928	26	10	574	1487	113847524	113848439	0.000000e+00	1402.0
7	TraesCS1A01G116100	chr1D	85.146	377	40	9	1531	1896	113571983	113572354	3.520000e-99	372.0
8	TraesCS1A01G116100	chr1D	93.991	233	14	0	1531	1763	113598160	113598392	1.280000e-93	353.0
9	TraesCS1A01G116100	chr1D	84.091	132	17	3	1280	1409	113571424	113571553	1.090000e-24	124.0
10	TraesCS1A01G116100	chr1D	80.451	133	22	3	1280	1410	113594844	113594974	6.600000e-17	99.0
11	TraesCS1A01G116100	chr1B	94.395	1017	38	6	475	1487	173596634	173597635	0.000000e+00	1544.0
12	TraesCS1A01G116100	chr1B	94.466	759	36	2	1489	2241	173597735	173598493	0.000000e+00	1164.0
13	TraesCS1A01G116100	chr1B	88.223	467	26	4	1	463	173595953	173596394	5.490000e-147	531.0
14	TraesCS1A01G116100	chr1B	85.263	380	40	9	1529	1897	172946738	172947112	7.570000e-101	377.0
15	TraesCS1A01G116100	chr1B	83.333	132	18	3	1280	1409	172944665	172944794	5.070000e-23	119.0
16	TraesCS1A01G116100	chr1B	77.143	175	31	6	1531	1699	626421816	626421645	3.070000e-15	93.5
17	TraesCS1A01G116100	chr5B	87.889	578	67	3	2321	2895	311547249	311547826	0.000000e+00	676.0
18	TraesCS1A01G116100	chr3B	88.235	561	60	4	2321	2879	4651423	4651979	0.000000e+00	665.0
19	TraesCS1A01G116100	chrUn	87.943	564	66	2	2321	2882	51393537	51394100	0.000000e+00	664.0
20	TraesCS1A01G116100	chrUn	87.831	567	67	2	2321	2885	278335178	278334612	0.000000e+00	664.0
21	TraesCS1A01G116100	chr7D	87.326	576	70	3	2321	2894	182613640	182613066	0.000000e+00	656.0
22	TraesCS1A01G116100	chr3D	87.744	563	68	1	2321	2882	581095639	581096201	0.000000e+00	656.0
23	TraesCS1A01G116100	chr4A	87.175	577	72	2	2321	2895	162419792	162420368	0.000000e+00	654.0
24	TraesCS1A01G116100	chr5D	87.002	577	72	3	2321	2894	61485455	61484879	0.000000e+00	647.0
25	TraesCS1A01G116100	chr2B	77.143	175	31	6	1531	1699	131103341	131103512	3.070000e-15	93.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1A01G116100	chr1A	121566788	121569682	2894	False	5347.000000	5347	100.000000	1	2895	1	chr1A.!!$F1	2894
1	TraesCS1A01G116100	chr1A	120376353	120379022	2669	False	251.000000	383	84.623500	1283	1897	2	chr1A.!!$F3	614
2	TraesCS1A01G116100	chr1A	120364246	120365061	815	False	244.000000	364	89.470500	1280	1763	2	chr1A.!!$F2	483
3	TraesCS1A01G116100	chr1D	113847524	113849959	2435	False	1780.500000	2159	94.323500	574	2895	2	chr1D.!!$F3	2321
4	TraesCS1A01G116100	chr1D	113571424	113572354	930	False	248.000000	372	84.618500	1280	1896	2	chr1D.!!$F1	616
5	TraesCS1A01G116100	chr1D	113594844	113598392	3548	False	226.000000	353	87.221000	1280	1763	2	chr1D.!!$F2	483
6	TraesCS1A01G116100	chr1B	173595953	173598493	2540	False	1079.666667	1544	92.361333	1	2241	3	chr1B.!!$F2	2240
7	TraesCS1A01G116100	chr1B	172944665	172947112	2447	False	248.000000	377	84.298000	1280	1897	2	chr1B.!!$F1	617
8	TraesCS1A01G116100	chr5B	311547249	311547826	577	False	676.000000	676	87.889000	2321	2895	1	chr5B.!!$F1	574
9	TraesCS1A01G116100	chr3B	4651423	4651979	556	False	665.000000	665	88.235000	2321	2879	1	chr3B.!!$F1	558
10	TraesCS1A01G116100	chrUn	51393537	51394100	563	False	664.000000	664	87.943000	2321	2882	1	chrUn.!!$F1	561
11	TraesCS1A01G116100	chrUn	278334612	278335178	566	True	664.000000	664	87.831000	2321	2885	1	chrUn.!!$R1	564
12	TraesCS1A01G116100	chr7D	182613066	182613640	574	True	656.000000	656	87.326000	2321	2894	1	chr7D.!!$R1	573
13	TraesCS1A01G116100	chr3D	581095639	581096201	562	False	656.000000	656	87.744000	2321	2882	1	chr3D.!!$F1	561
14	TraesCS1A01G116100	chr4A	162419792	162420368	576	False	654.000000	654	87.175000	2321	2895	1	chr4A.!!$F1	574
15	TraesCS1A01G116100	chr5D	61484879	61485455	576	True	647.000000	647	87.002000	2321	2894	1	chr5D.!!$R1	573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
302	306	0.329596	AAGGAACAGGGAGCATGGAC	59.670	55.0	0.0	0.0	0.0	4.02	F
549	781	0.530744	TACACCGTCCTTGCAGCTAG	59.469	55.0	0.0	0.0	0.0	3.42	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1648	5675	1.102978	TCTCGATCATGAAGCCGTCA	58.897	50.0	0.0	0.0	41.67	4.35	R
2544	6602	0.179150	TTGTTGTTCTGGTGCGTTGC	60.179	50.0	0.0	0.0	0.00	4.17	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	23	2.350895	CTCGGGTTGGCCACATCA	59.649	61.111	3.88	0.00	36.17	3.07
40	44	1.134401	TCAATGATGAGGGCCTCGAAC	60.134	52.381	27.58	20.25	32.35	3.95
84	88	2.742372	CACCGGTGAAAGAGCCCG	60.742	66.667	31.31	0.00	41.37	6.13
143	147	1.412710	AGAGACGGACACACACAACAT	59.587	47.619	0.00	0.00	0.00	2.71
147	151	4.385825	AGACGGACACACACAACATATTT	58.614	39.130	0.00	0.00	0.00	1.40
190	194	1.269998	GTCGTAATCCTCTCCCCATCG	59.730	57.143	0.00	0.00	0.00	3.84
193	197	1.185618	TAATCCTCTCCCCATCGCGG	61.186	60.000	6.13	0.00	0.00	6.46
207	211	2.546494	CGCGGAAATGATGGCCCTC	61.546	63.158	0.00	0.00	0.00	4.30
224	228	1.746220	CCTCCTCGATCTTTCAGTCGT	59.254	52.381	0.00	0.00	38.85	4.34
230	234	1.130749	CGATCTTTCAGTCGTCGTCCT	59.869	52.381	0.00	0.00	33.42	3.85
249	253	1.209504	CTGCGGGAATAAGAAGGTGGA	59.790	52.381	0.00	0.00	0.00	4.02
250	254	1.843851	TGCGGGAATAAGAAGGTGGAT	59.156	47.619	0.00	0.00	0.00	3.41
251	255	2.222027	GCGGGAATAAGAAGGTGGATG	58.778	52.381	0.00	0.00	0.00	3.51
252	256	2.851195	CGGGAATAAGAAGGTGGATGG	58.149	52.381	0.00	0.00	0.00	3.51
253	257	2.438021	CGGGAATAAGAAGGTGGATGGA	59.562	50.000	0.00	0.00	0.00	3.41
254	258	3.744530	CGGGAATAAGAAGGTGGATGGAC	60.745	52.174	0.00	0.00	0.00	4.02
255	259	3.467803	GGAATAAGAAGGTGGATGGACG	58.532	50.000	0.00	0.00	0.00	4.79
256	260	3.467803	GAATAAGAAGGTGGATGGACGG	58.532	50.000	0.00	0.00	0.00	4.79
257	261	0.539986	TAAGAAGGTGGATGGACGGC	59.460	55.000	0.00	0.00	0.00	5.68
258	262	2.124695	GAAGGTGGATGGACGGCC	60.125	66.667	0.00	0.00	0.00	6.13
267	271	4.473643	TGGACGGCCAAGAAACAG	57.526	55.556	8.12	0.00	42.49	3.16
268	272	1.228124	TGGACGGCCAAGAAACAGG	60.228	57.895	8.12	0.00	42.49	4.00
269	273	1.971695	GGACGGCCAAGAAACAGGG	60.972	63.158	0.00	0.00	0.00	4.45
270	274	1.072505	GACGGCCAAGAAACAGGGA	59.927	57.895	2.24	0.00	0.00	4.20
271	275	0.955919	GACGGCCAAGAAACAGGGAG	60.956	60.000	2.24	0.00	0.00	4.30
272	276	2.335712	CGGCCAAGAAACAGGGAGC	61.336	63.158	2.24	0.00	0.00	4.70
278	282	1.815003	CAAGAAACAGGGAGCATGGAC	59.185	52.381	0.00	0.00	0.00	4.02
282	286	4.864334	CAGGGAGCATGGACGGCC	62.864	72.222	0.00	0.00	0.00	6.13
302	306	0.329596	AAGGAACAGGGAGCATGGAC	59.670	55.000	0.00	0.00	0.00	4.02
331	335	2.877691	GTGCCATCAAGGAACGCC	59.122	61.111	0.00	0.00	35.78	5.68
333	337	2.746277	GCCATCAAGGAACGCCGT	60.746	61.111	0.00	0.00	41.22	5.68
336	340	2.746277	ATCAAGGAACGCCGTGGC	60.746	61.111	0.00	0.00	42.98	5.01
390	394	0.896479	TTCGTCGACCTCACCATCCA	60.896	55.000	10.58	0.00	0.00	3.41
391	395	0.896479	TCGTCGACCTCACCATCCAA	60.896	55.000	10.58	0.00	0.00	3.53
394	398	1.447838	CGACCTCACCATCCAACGG	60.448	63.158	0.00	0.00	0.00	4.44
402	406	2.502130	TCACCATCCAACGGCTAACATA	59.498	45.455	0.00	0.00	0.00	2.29
452	456	9.565090	AGATGCAAGCATTTTCACTAATCTATA	57.435	29.630	9.16	0.00	36.70	1.31
549	781	0.530744	TACACCGTCCTTGCAGCTAG	59.469	55.000	0.00	0.00	0.00	3.42
590	822	5.594926	CATCAATTGGGAAGAATTACAGGC	58.405	41.667	5.42	0.00	0.00	4.85
591	823	4.671831	TCAATTGGGAAGAATTACAGGCA	58.328	39.130	5.42	0.00	0.00	4.75
666	899	1.717113	TGTCGCTCGTGTTACATTTCG	59.283	47.619	0.00	0.00	0.00	3.46
764	998	5.620206	TCCCCACACATATAATAGCAACAG	58.380	41.667	0.00	0.00	0.00	3.16
820	1066	1.134965	GGAAGAGACCACCATCTCACG	60.135	57.143	5.63	0.00	46.51	4.35
905	1151	4.216708	TGCAATTTCATGGGCATAGATGA	58.783	39.130	0.00	0.00	0.00	2.92
961	1207	3.812053	GCAATAGTTCAGTGATAGCCTGG	59.188	47.826	0.00	0.00	0.00	4.45
1216	1462	4.562082	ACAACTGGTTGATGCATGAAATG	58.438	39.130	18.63	0.00	44.69	2.32
1396	1645	2.509548	CCCCAAGGATAACCACATCTCA	59.490	50.000	0.00	0.00	38.94	3.27
1487	4895	7.061752	AGAATGAACTTATGTTGTACGCTTC	57.938	36.000	0.00	0.00	36.39	3.86
1648	5675	1.827969	CAGATCTTCTTCCACGACCCT	59.172	52.381	0.00	0.00	0.00	4.34
1954	5993	4.036804	GAAATGGTGGCGTGCGCA	62.037	61.111	18.36	5.66	44.11	6.09
2031	6070	2.334181	TGCATGCGGGTGTCATGTG	61.334	57.895	14.09	0.00	42.34	3.21
2136	6175	0.169672	CTGGTTTTGAGCTCGCCATG	59.830	55.000	9.64	5.63	0.00	3.66
2162	6201	2.300152	TGTTGCTCTCGTCAATTCTCCT	59.700	45.455	0.00	0.00	0.00	3.69
2179	6226	0.907486	CCTGCCATCTCTTCAGTGGA	59.093	55.000	0.00	0.00	34.94	4.02
2268	6320	9.341899	GTACATTAACAAATTTCAGGTGTGATC	57.658	33.333	0.00	0.00	30.85	2.92
2279	6331	4.780815	TCAGGTGTGATCAAAAACTGACT	58.219	39.130	18.88	1.29	36.69	3.41
2422	6480	1.674962	GATTCGTAGACCACCTAGCGT	59.325	52.381	0.00	0.00	34.32	5.07
2508	6566	2.482721	CGGCAAACCTTGTTGTAGTAGG	59.517	50.000	0.00	0.00	35.14	3.18
2513	6571	4.432980	AACCTTGTTGTAGTAGGCAGTT	57.567	40.909	0.00	0.00	32.08	3.16
2544	6602	2.693591	TCGTGCTAAGGTCCCATAGAAG	59.306	50.000	0.00	0.00	0.00	2.85
2560	6618	0.380378	GAAGCAACGCACCAGAACAA	59.620	50.000	0.00	0.00	0.00	2.83
2570	6628	0.108041	ACCAGAACAACAACCGTCGT	60.108	50.000	0.00	0.00	0.00	4.34
2661	6720	1.815003	GAGCAATCCACCAAAGACAGG	59.185	52.381	0.00	0.00	0.00	4.00
2664	6723	2.815589	GCAATCCACCAAAGACAGGTCT	60.816	50.000	0.00	0.00	42.75	3.85
2772	6832	4.838152	GAAGCCGCCGCCATCTCA	62.838	66.667	0.00	0.00	34.57	3.27
2778	6838	2.268920	GCCGCCATCTCACCTTCA	59.731	61.111	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	23	1.427809	TCGAGGCCCTCATCATTGAT	58.572	50.000	12.13	0.00	0.00	2.57
40	44	4.969196	CCATGGACCGGATCGCGG	62.969	72.222	9.46	17.75	0.00	6.46
49	53	1.303282	GGTGACCTTCCCATGGACC	59.697	63.158	15.22	7.08	0.00	4.46
190	194	2.196245	GGAGGGCCATCATTTCCGC	61.196	63.158	20.75	0.00	0.00	5.54
193	197	0.469917	TCGAGGAGGGCCATCATTTC	59.530	55.000	20.75	12.19	36.29	2.17
207	211	1.130749	ACGACGACTGAAAGATCGAGG	59.869	52.381	0.00	0.00	38.94	4.63
230	234	1.281419	TCCACCTTCTTATTCCCGCA	58.719	50.000	0.00	0.00	0.00	5.69
249	253	0.609131	CCTGTTTCTTGGCCGTCCAT	60.609	55.000	0.00	0.00	43.05	3.41
250	254	1.228124	CCTGTTTCTTGGCCGTCCA	60.228	57.895	0.00	0.00	41.55	4.02
251	255	1.971695	CCCTGTTTCTTGGCCGTCC	60.972	63.158	0.00	0.00	0.00	4.79
252	256	0.955919	CTCCCTGTTTCTTGGCCGTC	60.956	60.000	0.00	0.00	0.00	4.79
253	257	1.073199	CTCCCTGTTTCTTGGCCGT	59.927	57.895	0.00	0.00	0.00	5.68
254	258	2.335712	GCTCCCTGTTTCTTGGCCG	61.336	63.158	0.00	0.00	0.00	6.13
255	259	0.613012	ATGCTCCCTGTTTCTTGGCC	60.613	55.000	0.00	0.00	0.00	5.36
256	260	0.529378	CATGCTCCCTGTTTCTTGGC	59.471	55.000	0.00	0.00	0.00	4.52
257	261	1.180029	CCATGCTCCCTGTTTCTTGG	58.820	55.000	0.00	0.00	0.00	3.61
258	262	1.815003	GTCCATGCTCCCTGTTTCTTG	59.185	52.381	0.00	0.00	0.00	3.02
259	263	1.611673	CGTCCATGCTCCCTGTTTCTT	60.612	52.381	0.00	0.00	0.00	2.52
260	264	0.036010	CGTCCATGCTCCCTGTTTCT	60.036	55.000	0.00	0.00	0.00	2.52
261	265	1.026718	CCGTCCATGCTCCCTGTTTC	61.027	60.000	0.00	0.00	0.00	2.78
262	266	1.002134	CCGTCCATGCTCCCTGTTT	60.002	57.895	0.00	0.00	0.00	2.83
263	267	2.671070	CCGTCCATGCTCCCTGTT	59.329	61.111	0.00	0.00	0.00	3.16
264	268	4.101448	GCCGTCCATGCTCCCTGT	62.101	66.667	0.00	0.00	0.00	4.00
265	269	4.864334	GGCCGTCCATGCTCCCTG	62.864	72.222	0.00	0.00	0.00	4.45
267	271	4.424711	TTGGCCGTCCATGCTCCC	62.425	66.667	0.00	0.00	43.05	4.30
268	272	2.825836	CTTGGCCGTCCATGCTCC	60.826	66.667	0.00	0.00	43.05	4.70
269	273	2.819984	TTCCTTGGCCGTCCATGCTC	62.820	60.000	0.00	0.00	43.05	4.26
270	274	2.905996	TTCCTTGGCCGTCCATGCT	61.906	57.895	0.00	0.00	43.05	3.79
271	275	2.361104	TTCCTTGGCCGTCCATGC	60.361	61.111	0.00	0.00	43.05	4.06
272	276	1.303236	TGTTCCTTGGCCGTCCATG	60.303	57.895	0.00	0.00	43.05	3.66
278	282	2.045926	CTCCCTGTTCCTTGGCCG	60.046	66.667	0.00	0.00	0.00	6.13
282	286	0.329261	TCCATGCTCCCTGTTCCTTG	59.671	55.000	0.00	0.00	0.00	3.61
302	306	2.046988	TGGCACATCAGACTGGCG	60.047	61.111	1.81	0.00	35.74	5.69
336	340	3.110178	GGTGGTCCGCGACTTTCG	61.110	66.667	8.23	0.00	43.89	3.46
366	370	1.340308	TGGTGAGGTCGACGAATCCTA	60.340	52.381	9.92	0.00	0.00	2.94
367	371	0.611062	TGGTGAGGTCGACGAATCCT	60.611	55.000	9.92	6.72	0.00	3.24
377	381	1.745489	GCCGTTGGATGGTGAGGTC	60.745	63.158	0.00	0.00	0.00	3.85
390	394	3.195661	GCTAGTGCTTATGTTAGCCGTT	58.804	45.455	0.00	0.00	40.49	4.44
391	395	2.822764	GCTAGTGCTTATGTTAGCCGT	58.177	47.619	0.00	0.00	40.49	5.68
513	745	3.549625	GGTGTAAGACCGCTCGTAATAGG	60.550	52.174	0.00	0.00	34.02	2.57
549	781	1.816074	TGCCGGACAACTGGATTAAC	58.184	50.000	5.05	0.00	44.87	2.01
638	871	4.687018	TGTAACACGAGCGACATGTTTTAT	59.313	37.500	0.00	0.00	37.68	1.40
666	899	0.533032	CGAGGAGTCCCAGTTCTTCC	59.467	60.000	5.25	0.00	33.88	3.46
764	998	5.696724	GCTGTGCCGATGAATATATATACCC	59.303	44.000	0.00	0.00	0.00	3.69
905	1151	1.399714	TCGTTGCTGGGACGATCTAT	58.600	50.000	0.00	0.00	43.79	1.98
926	1172	2.292267	ACTATTGCCTCAAAGCCGATG	58.708	47.619	0.00	0.00	0.00	3.84
961	1207	4.849329	CCGCGCGTCCTCACCTAC	62.849	72.222	29.95	0.00	0.00	3.18
1396	1645	3.629087	AGTAGCAGTACGTACCTGGAAT	58.371	45.455	21.80	2.48	33.97	3.01
1435	1949	3.120546	CGTCATCGAGCAATCAGTGTTTT	60.121	43.478	0.00	0.00	39.71	2.43
1463	1977	6.092259	GGAAGCGTACAACATAAGTTCATTCT	59.908	38.462	0.00	0.00	35.28	2.40
1487	4895	1.265095	CCGCAAATCATTCATCTCGGG	59.735	52.381	0.00	0.00	32.75	5.14
1648	5675	1.102978	TCTCGATCATGAAGCCGTCA	58.897	50.000	0.00	0.00	41.67	4.35
1954	5993	1.144057	GAACCACTCCATCCGCGAT	59.856	57.895	8.23	0.00	0.00	4.58
1965	6004	2.528797	GCGACACGAATGAACCACT	58.471	52.632	0.00	0.00	0.00	4.00
2162	6201	1.942776	TCTCCACTGAAGAGATGGCA	58.057	50.000	0.00	0.00	35.46	4.92
2179	6226	6.370718	GTGTACTTGAACCCACGATATTTTCT	59.629	38.462	0.00	0.00	0.00	2.52
2268	6320	5.572896	GTGAAAGTTGTGGAGTCAGTTTTTG	59.427	40.000	0.00	0.00	0.00	2.44
2279	6331	4.764823	GGTATTCCATGTGAAAGTTGTGGA	59.235	41.667	0.00	0.00	36.33	4.02
2422	6480	4.424626	CTCGCTTCAATGCTTGTAGTAGA	58.575	43.478	0.00	0.00	31.53	2.59
2508	6566	1.300697	ACGACGACTTCCCAACTGC	60.301	57.895	0.00	0.00	0.00	4.40
2513	6571	0.242825	CTTAGCACGACGACTTCCCA	59.757	55.000	0.00	0.00	0.00	4.37
2544	6602	0.179150	TTGTTGTTCTGGTGCGTTGC	60.179	50.000	0.00	0.00	0.00	4.17
2560	6618	0.594602	TCTTCATCGACGACGGTTGT	59.405	50.000	7.55	0.00	40.21	3.32
2570	6628	7.054751	TCCTTCTAATCTACACTCTTCATCGA	58.945	38.462	0.00	0.00	0.00	3.59
2664	6723	3.773370	GGAGGTGTGTCTCCGACA	58.227	61.111	0.00	0.00	43.19	4.35
2726	6785	6.118852	AGATGGAATAAAGGTCTTCTTGCTC	58.881	40.000	0.00	0.00	35.55	4.26
2731	6790	6.445139	TCCTGAAGATGGAATAAAGGTCTTCT	59.555	38.462	12.80	0.00	43.11	2.85
2822	6882	1.080025	CGGTGGGAGGTCTTCGTTC	60.080	63.158	0.00	0.00	0.00	3.95

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.