Multiple sequence alignment - TraesCS1A01G116000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G116000 chr1A 100.000 4611 0 0 1 4611 121137039 121132429 0.000000e+00 8516.0
1 TraesCS1A01G116000 chr1A 98.802 167 1 1 1416 1582 98230519 98230684 3.490000e-76 296.0
2 TraesCS1A01G116000 chr1A 90.769 130 9 2 801 928 108769740 108769868 2.210000e-38 171.0
3 TraesCS1A01G116000 chr1A 91.525 59 3 1 70 126 80282510 80282452 3.820000e-11 80.5
4 TraesCS1A01G116000 chr1B 97.562 2543 39 5 1576 4117 173131385 173128865 0.000000e+00 4331.0
5 TraesCS1A01G116000 chr1B 94.764 1165 32 7 273 1414 173132539 173131381 0.000000e+00 1786.0
6 TraesCS1A01G116000 chr1B 95.556 405 12 5 4118 4518 623455441 623455039 1.080000e-180 643.0
7 TraesCS1A01G116000 chr1B 97.688 173 3 1 1406 1577 26850858 26851030 3.490000e-76 296.0
8 TraesCS1A01G116000 chr1B 93.478 92 4 2 4522 4611 173128870 173128779 8.050000e-28 135.0
9 TraesCS1A01G116000 chr4A 96.935 2545 61 8 1576 4117 446609249 446611779 0.000000e+00 4252.0
10 TraesCS1A01G116000 chr4A 95.140 679 20 6 164 840 446594501 446595168 0.000000e+00 1059.0
11 TraesCS1A01G116000 chr4A 96.560 407 14 0 1008 1414 446608847 446609253 0.000000e+00 675.0
12 TraesCS1A01G116000 chr4A 95.238 105 5 0 827 931 446607083 446607187 2.850000e-37 167.0
13 TraesCS1A01G116000 chr4A 94.118 68 4 0 1 68 629925400 629925467 2.270000e-18 104.0
14 TraesCS1A01G116000 chr4D 96.385 2545 85 5 1577 4117 123146251 123143710 0.000000e+00 4183.0
15 TraesCS1A01G116000 chr4D 89.804 971 57 21 473 1414 123147205 123146248 0.000000e+00 1206.0
16 TraesCS1A01G116000 chr4D 94.000 150 6 2 219 367 123147700 123147553 1.670000e-54 224.0
17 TraesCS1A01G116000 chr4D 97.059 34 1 0 129 162 154011578 154011611 1.790000e-04 58.4
18 TraesCS1A01G116000 chr4B 95.405 2546 104 7 1576 4117 187732415 187729879 0.000000e+00 4041.0
19 TraesCS1A01G116000 chr4B 92.657 572 20 7 865 1414 187732982 187732411 0.000000e+00 804.0
20 TraesCS1A01G116000 chr4B 97.052 441 9 3 435 874 187734602 187734165 0.000000e+00 739.0
21 TraesCS1A01G116000 chr4B 85.455 165 7 6 160 323 187735012 187734864 6.180000e-34 156.0
22 TraesCS1A01G116000 chr4B 100.000 28 0 0 136 163 487600331 487600358 8.000000e-03 52.8
23 TraesCS1A01G116000 chr7D 93.637 1666 83 9 1807 3462 590451994 590450342 0.000000e+00 2468.0
24 TraesCS1A01G116000 chr7D 86.749 649 46 15 803 1414 590518835 590518190 0.000000e+00 686.0
25 TraesCS1A01G116000 chr7D 87.500 328 24 5 3457 3768 590447425 590447099 3.390000e-96 363.0
26 TraesCS1A01G116000 chr7D 91.703 229 19 0 1577 1805 590518193 590517965 7.440000e-83 318.0
27 TraesCS1A01G116000 chr7D 93.182 44 3 0 3832 3875 590447076 590447033 1.070000e-06 65.8
28 TraesCS1A01G116000 chr5B 96.790 405 8 5 4118 4519 377191815 377191413 0.000000e+00 671.0
29 TraesCS1A01G116000 chr5B 85.000 440 41 17 516 936 599656307 599655874 1.530000e-114 424.0
30 TraesCS1A01G116000 chr3B 96.010 401 14 2 4118 4518 695554351 695554749 0.000000e+00 651.0
31 TraesCS1A01G116000 chr3B 98.810 168 2 0 1416 1583 39090230 39090397 2.700000e-77 300.0
32 TraesCS1A01G116000 chr3B 99.383 162 1 0 1416 1577 466262472 466262633 1.250000e-75 294.0
33 TraesCS1A01G116000 chr7B 94.749 419 15 7 4118 4534 186861757 186862170 0.000000e+00 645.0
34 TraesCS1A01G116000 chr7B 95.355 409 11 5 4118 4519 59637269 59636862 1.080000e-180 643.0
35 TraesCS1A01G116000 chr7B 95.285 403 16 3 4118 4518 74205634 74205233 1.810000e-178 636.0
36 TraesCS1A01G116000 chr7B 93.602 422 20 7 4109 4527 436766067 436766484 1.410000e-174 623.0
37 TraesCS1A01G116000 chr6B 95.610 410 4 5 4110 4518 37647761 37648157 0.000000e+00 645.0
38 TraesCS1A01G116000 chr6B 96.923 65 2 0 5 69 707395537 707395473 4.880000e-20 110.0
39 TraesCS1A01G116000 chr2A 94.471 416 15 5 4107 4518 707746647 707746236 6.510000e-178 634.0
40 TraesCS1A01G116000 chr2A 99.394 165 1 0 1416 1580 28801506 28801670 2.700000e-77 300.0
41 TraesCS1A01G116000 chr2A 98.802 167 1 1 1416 1582 362436491 362436656 3.490000e-76 296.0
42 TraesCS1A01G116000 chr2A 86.620 142 16 3 756 896 566598296 566598435 2.220000e-33 154.0
43 TraesCS1A01G116000 chr5D 85.421 439 41 14 516 936 487291668 487291235 7.080000e-118 435.0
44 TraesCS1A01G116000 chr5D 91.016 256 22 1 1751 2005 119459884 119460139 1.230000e-90 344.0
45 TraesCS1A01G116000 chr5D 95.385 65 3 0 1 65 538685835 538685899 2.270000e-18 104.0
46 TraesCS1A01G116000 chrUn 90.370 270 22 4 1754 2019 261868755 261869024 7.340000e-93 351.0
47 TraesCS1A01G116000 chrUn 92.754 69 5 0 1 69 254428289 254428357 2.940000e-17 100.0
48 TraesCS1A01G116000 chrUn 92.754 69 5 0 1 69 344390637 344390569 2.940000e-17 100.0
49 TraesCS1A01G116000 chr2D 91.700 253 20 1 1754 2005 453710421 453710169 2.640000e-92 350.0
50 TraesCS1A01G116000 chr6D 90.347 259 21 3 1751 2005 285487738 285487996 2.060000e-88 337.0
51 TraesCS1A01G116000 chr6D 92.754 69 5 0 1 69 165448159 165448091 2.940000e-17 100.0
52 TraesCS1A01G116000 chr2B 85.397 315 32 8 516 824 489351722 489352028 9.630000e-82 315.0
53 TraesCS1A01G116000 chr2B 96.667 180 4 2 1398 1577 160668020 160667843 9.700000e-77 298.0
54 TraesCS1A01G116000 chr2B 94.271 192 5 5 1416 1602 43674630 43674440 5.840000e-74 289.0
55 TraesCS1A01G116000 chr2B 92.727 55 4 0 67 121 579978961 579979015 3.820000e-11 80.5
56 TraesCS1A01G116000 chr6A 97.143 175 3 2 1416 1589 447173476 447173303 1.250000e-75 294.0
57 TraesCS1A01G116000 chr5A 85.065 154 11 7 368 516 607684670 607684524 3.720000e-31 147.0
58 TraesCS1A01G116000 chr3D 97.101 69 2 0 1 69 148504927 148504859 2.910000e-22 117.0
59 TraesCS1A01G116000 chr7A 94.118 68 4 0 1 68 62734891 62734958 2.270000e-18 104.0
60 TraesCS1A01G116000 chr1D 95.385 65 3 0 1 65 80673374 80673438 2.270000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G116000 chr1A 121132429 121137039 4610 True 8516.0 8516 100.000000 1 4611 1 chr1A.!!$R2 4610
1 TraesCS1A01G116000 chr1B 173128779 173132539 3760 True 2084.0 4331 95.268000 273 4611 3 chr1B.!!$R2 4338
2 TraesCS1A01G116000 chr4A 446607083 446611779 4696 False 1698.0 4252 96.244333 827 4117 3 chr4A.!!$F3 3290
3 TraesCS1A01G116000 chr4A 446594501 446595168 667 False 1059.0 1059 95.140000 164 840 1 chr4A.!!$F1 676
4 TraesCS1A01G116000 chr4D 123143710 123147700 3990 True 1871.0 4183 93.396333 219 4117 3 chr4D.!!$R1 3898
5 TraesCS1A01G116000 chr4B 187729879 187735012 5133 True 1435.0 4041 92.642250 160 4117 4 chr4B.!!$R1 3957
6 TraesCS1A01G116000 chr7D 590447033 590451994 4961 True 965.6 2468 91.439667 1807 3875 3 chr7D.!!$R1 2068
7 TraesCS1A01G116000 chr7D 590517965 590518835 870 True 502.0 686 89.226000 803 1805 2 chr7D.!!$R2 1002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.030504 TGGCAAAGCGATGTGTTGTG 59.969 50.0 0.00 0.00 0.0 3.33 F
35 36 0.030638 GGCAAAGCGATGTGTTGTGT 59.969 50.0 0.00 0.00 0.0 3.72 F
222 223 0.765510 GGGTGGAGCTATGTAAGGGG 59.234 60.0 0.00 0.00 0.0 4.79 F
1420 4467 0.109873 GTGCACTGTTCATGAGCTGC 60.110 55.0 10.32 14.62 0.0 5.25 F
1422 4469 0.168348 GCACTGTTCATGAGCTGCTG 59.832 55.0 7.01 12.89 0.0 4.41 F
1427 4474 0.170561 GTTCATGAGCTGCTGCCTTG 59.829 55.0 7.01 11.57 40.8 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1239 4286 0.035820 TGCCTGGAACAACGGGTATC 60.036 55.000 0.00 0.0 38.70 2.24 R
1420 4467 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.0 44.78 4.85 R
1477 4524 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.0 0.00 2.74 R
2712 5769 4.141846 ACTCGACCTGATGTTGAATGCTAT 60.142 41.667 0.00 0.0 36.92 2.97 R
2827 5902 8.783660 AATACTGTATGTCATCTTCTTCCCTA 57.216 34.615 0.22 0.0 0.00 3.53 R
3922 9943 1.336755 CAAAACCCACCAGTACACTGC 59.663 52.381 3.75 0.0 42.47 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.818130 AAATTGGCAAAGCGATGTGT 57.182 40.000 3.01 0.00 0.00 3.72
31 32 2.818130 AATTGGCAAAGCGATGTGTT 57.182 40.000 3.01 0.00 0.00 3.32
32 33 2.068837 ATTGGCAAAGCGATGTGTTG 57.931 45.000 3.01 0.00 0.00 3.33
33 34 0.743688 TTGGCAAAGCGATGTGTTGT 59.256 45.000 0.00 0.00 0.00 3.32
34 35 0.030504 TGGCAAAGCGATGTGTTGTG 59.969 50.000 0.00 0.00 0.00 3.33
35 36 0.030638 GGCAAAGCGATGTGTTGTGT 59.969 50.000 0.00 0.00 0.00 3.72
36 37 1.265635 GGCAAAGCGATGTGTTGTGTA 59.734 47.619 0.00 0.00 0.00 2.90
37 38 2.287308 GGCAAAGCGATGTGTTGTGTAA 60.287 45.455 0.00 0.00 0.00 2.41
38 39 3.367607 GCAAAGCGATGTGTTGTGTAAA 58.632 40.909 0.00 0.00 0.00 2.01
39 40 3.794028 GCAAAGCGATGTGTTGTGTAAAA 59.206 39.130 0.00 0.00 0.00 1.52
40 41 4.266502 GCAAAGCGATGTGTTGTGTAAAAA 59.733 37.500 0.00 0.00 0.00 1.94
41 42 5.713281 CAAAGCGATGTGTTGTGTAAAAAC 58.287 37.500 0.00 0.00 33.57 2.43
42 43 4.624336 AGCGATGTGTTGTGTAAAAACA 57.376 36.364 0.00 0.00 43.01 2.83
54 55 8.926710 TGTTGTGTAAAAACATGTTAAGGTTTG 58.073 29.630 12.39 0.00 39.64 2.93
55 56 9.141400 GTTGTGTAAAAACATGTTAAGGTTTGA 57.859 29.630 12.39 0.00 39.26 2.69
56 57 9.706691 TTGTGTAAAAACATGTTAAGGTTTGAA 57.293 25.926 12.39 0.00 39.26 2.69
57 58 9.706691 TGTGTAAAAACATGTTAAGGTTTGAAA 57.293 25.926 12.39 0.00 39.26 2.69
61 62 7.770801 AAAACATGTTAAGGTTTGAAAGAGC 57.229 32.000 12.39 0.00 39.26 4.09
62 63 6.715347 AACATGTTAAGGTTTGAAAGAGCT 57.285 33.333 9.97 0.00 0.00 4.09
63 64 6.076981 ACATGTTAAGGTTTGAAAGAGCTG 57.923 37.500 0.00 0.00 0.00 4.24
64 65 4.568152 TGTTAAGGTTTGAAAGAGCTGC 57.432 40.909 0.00 0.00 0.00 5.25
65 66 3.951037 TGTTAAGGTTTGAAAGAGCTGCA 59.049 39.130 1.02 0.00 0.00 4.41
66 67 4.584325 TGTTAAGGTTTGAAAGAGCTGCAT 59.416 37.500 1.02 0.00 0.00 3.96
67 68 5.068987 TGTTAAGGTTTGAAAGAGCTGCATT 59.931 36.000 1.02 0.00 0.00 3.56
68 69 3.930634 AGGTTTGAAAGAGCTGCATTC 57.069 42.857 1.02 4.23 0.00 2.67
69 70 3.225104 AGGTTTGAAAGAGCTGCATTCA 58.775 40.909 1.02 6.92 0.00 2.57
70 71 3.638160 AGGTTTGAAAGAGCTGCATTCAA 59.362 39.130 18.14 18.14 40.29 2.69
71 72 4.099881 AGGTTTGAAAGAGCTGCATTCAAA 59.900 37.500 24.25 24.25 45.61 2.69
75 76 7.642071 TTTGAAAGAGCTGCATTCAAAATAC 57.358 32.000 25.10 2.55 45.14 1.89
76 77 6.330004 TGAAAGAGCTGCATTCAAAATACA 57.670 33.333 1.02 0.00 30.60 2.29
77 78 6.747125 TGAAAGAGCTGCATTCAAAATACAA 58.253 32.000 1.02 0.00 30.60 2.41
78 79 7.208777 TGAAAGAGCTGCATTCAAAATACAAA 58.791 30.769 1.02 0.00 30.60 2.83
79 80 7.874016 TGAAAGAGCTGCATTCAAAATACAAAT 59.126 29.630 1.02 0.00 30.60 2.32
80 81 7.591006 AAGAGCTGCATTCAAAATACAAATG 57.409 32.000 1.02 0.00 34.30 2.32
81 82 6.927416 AGAGCTGCATTCAAAATACAAATGA 58.073 32.000 1.02 0.00 33.22 2.57
82 83 7.380536 AGAGCTGCATTCAAAATACAAATGAA 58.619 30.769 1.02 0.00 37.47 2.57
83 84 7.874016 AGAGCTGCATTCAAAATACAAATGAAA 59.126 29.630 1.02 0.00 36.72 2.69
84 85 8.556213 AGCTGCATTCAAAATACAAATGAAAT 57.444 26.923 1.02 0.00 36.72 2.17
85 86 8.447833 AGCTGCATTCAAAATACAAATGAAATG 58.552 29.630 1.02 0.00 36.72 2.32
86 87 7.217447 GCTGCATTCAAAATACAAATGAAATGC 59.783 33.333 9.20 9.20 36.72 3.56
87 88 8.325421 TGCATTCAAAATACAAATGAAATGCT 57.675 26.923 15.23 0.00 37.84 3.79
88 89 8.231161 TGCATTCAAAATACAAATGAAATGCTG 58.769 29.630 15.23 0.63 37.84 4.41
89 90 7.217447 GCATTCAAAATACAAATGAAATGCTGC 59.783 33.333 8.93 0.00 36.72 5.25
90 91 7.966246 TTCAAAATACAAATGAAATGCTGCT 57.034 28.000 0.00 0.00 30.60 4.24
91 92 7.354025 TCAAAATACAAATGAAATGCTGCTG 57.646 32.000 0.00 0.00 0.00 4.41
92 93 7.153315 TCAAAATACAAATGAAATGCTGCTGA 58.847 30.769 0.00 0.00 0.00 4.26
93 94 7.656542 TCAAAATACAAATGAAATGCTGCTGAA 59.343 29.630 0.00 0.00 0.00 3.02
94 95 7.966246 AAATACAAATGAAATGCTGCTGAAA 57.034 28.000 0.00 0.00 0.00 2.69
95 96 8.556213 AAATACAAATGAAATGCTGCTGAAAT 57.444 26.923 0.00 0.00 0.00 2.17
96 97 8.556213 AATACAAATGAAATGCTGCTGAAATT 57.444 26.923 0.00 0.00 0.00 1.82
97 98 6.870971 ACAAATGAAATGCTGCTGAAATTT 57.129 29.167 0.00 0.00 0.00 1.82
98 99 7.266922 ACAAATGAAATGCTGCTGAAATTTT 57.733 28.000 0.00 0.00 0.00 1.82
99 100 7.136119 ACAAATGAAATGCTGCTGAAATTTTG 58.864 30.769 0.00 7.48 0.00 2.44
100 101 7.012515 ACAAATGAAATGCTGCTGAAATTTTGA 59.987 29.630 16.41 2.48 0.00 2.69
101 102 7.499321 AATGAAATGCTGCTGAAATTTTGAA 57.501 28.000 0.00 0.00 0.00 2.69
102 103 7.681939 ATGAAATGCTGCTGAAATTTTGAAT 57.318 28.000 0.00 0.00 0.00 2.57
103 104 7.499321 TGAAATGCTGCTGAAATTTTGAATT 57.501 28.000 0.00 0.00 0.00 2.17
104 105 7.932335 TGAAATGCTGCTGAAATTTTGAATTT 58.068 26.923 0.00 0.00 0.00 1.82
105 106 8.407064 TGAAATGCTGCTGAAATTTTGAATTTT 58.593 25.926 0.00 0.00 0.00 1.82
106 107 9.240159 GAAATGCTGCTGAAATTTTGAATTTTT 57.760 25.926 0.00 0.00 0.00 1.94
107 108 8.568732 AATGCTGCTGAAATTTTGAATTTTTG 57.431 26.923 0.00 0.00 0.00 2.44
108 109 7.086230 TGCTGCTGAAATTTTGAATTTTTGT 57.914 28.000 0.00 0.00 0.00 2.83
109 110 7.536855 TGCTGCTGAAATTTTGAATTTTTGTT 58.463 26.923 0.00 0.00 0.00 2.83
110 111 8.671921 TGCTGCTGAAATTTTGAATTTTTGTTA 58.328 25.926 0.00 0.00 0.00 2.41
111 112 9.667989 GCTGCTGAAATTTTGAATTTTTGTTAT 57.332 25.926 0.00 0.00 0.00 1.89
142 143 6.899393 TTTTCTGCAATGATAGTTGGTTCT 57.101 33.333 0.00 0.00 0.00 3.01
143 144 6.899393 TTTCTGCAATGATAGTTGGTTCTT 57.101 33.333 0.00 0.00 0.00 2.52
144 145 6.500684 TTCTGCAATGATAGTTGGTTCTTC 57.499 37.500 0.00 0.00 0.00 2.87
145 146 5.559770 TCTGCAATGATAGTTGGTTCTTCA 58.440 37.500 0.00 0.00 0.00 3.02
146 147 6.003326 TCTGCAATGATAGTTGGTTCTTCAA 58.997 36.000 0.00 0.00 0.00 2.69
147 148 6.012658 TGCAATGATAGTTGGTTCTTCAAC 57.987 37.500 0.00 0.00 45.22 3.18
158 159 3.159353 GTTCTTCAACCAAACACACCC 57.841 47.619 0.00 0.00 0.00 4.61
222 223 0.765510 GGGTGGAGCTATGTAAGGGG 59.234 60.000 0.00 0.00 0.00 4.79
276 277 2.311841 ACCAAATTTAGCTAGGCCCAGT 59.688 45.455 0.00 0.00 0.00 4.00
695 943 8.057742 GCATTGTTCTGTACATTTTGACAAAAG 58.942 33.333 17.73 12.24 36.44 2.27
702 953 9.698309 TCTGTACATTTTGACAAAAGAAAAACA 57.302 25.926 17.73 14.60 33.22 2.83
729 981 6.038161 TCCAGTTTGGCAGTATCAATAATTCG 59.962 38.462 0.00 0.00 37.47 3.34
914 2368 9.971744 CAGAATTTGAAAAATTTCGTGTTCTTT 57.028 25.926 12.63 0.00 40.01 2.52
1077 4121 2.343758 GCGAACCTGTCTCCAGCA 59.656 61.111 0.00 0.00 37.38 4.41
1181 4228 8.462811 CAGAGTCTATCTTCTTACAGCTTTACA 58.537 37.037 0.00 0.00 35.47 2.41
1191 4238 3.652057 ACAGCTTTACATGGGCTACAT 57.348 42.857 0.00 0.00 41.57 2.29
1239 4286 2.249535 CGATGAGCCGAGGCATTGG 61.250 63.158 17.18 0.00 44.88 3.16
1279 4326 1.211949 CGTGGGATGGTGGATAGGTTT 59.788 52.381 0.00 0.00 0.00 3.27
1417 4464 2.780065 TTTGTGCACTGTTCATGAGC 57.220 45.000 19.41 2.05 0.00 4.26
1418 4465 1.971481 TTGTGCACTGTTCATGAGCT 58.029 45.000 19.41 0.00 0.00 4.09
1419 4466 1.232119 TGTGCACTGTTCATGAGCTG 58.768 50.000 19.41 13.64 0.00 4.24
1420 4467 0.109873 GTGCACTGTTCATGAGCTGC 60.110 55.000 10.32 14.62 0.00 5.25
1421 4468 0.250597 TGCACTGTTCATGAGCTGCT 60.251 50.000 19.61 0.00 0.00 4.24
1422 4469 0.168348 GCACTGTTCATGAGCTGCTG 59.832 55.000 7.01 12.89 0.00 4.41
1423 4470 0.168348 CACTGTTCATGAGCTGCTGC 59.832 55.000 7.01 7.62 40.05 5.25
1424 4471 0.959372 ACTGTTCATGAGCTGCTGCC 60.959 55.000 7.01 4.62 40.80 4.85
1425 4472 0.677098 CTGTTCATGAGCTGCTGCCT 60.677 55.000 7.01 0.00 40.80 4.75
1426 4473 0.251033 TGTTCATGAGCTGCTGCCTT 60.251 50.000 7.01 0.00 40.80 4.35
1427 4474 0.170561 GTTCATGAGCTGCTGCCTTG 59.829 55.000 7.01 11.57 40.80 3.61
1428 4475 0.251033 TTCATGAGCTGCTGCCTTGT 60.251 50.000 7.01 0.00 40.80 3.16
1429 4476 0.958876 TCATGAGCTGCTGCCTTGTG 60.959 55.000 7.01 6.72 40.80 3.33
1430 4477 0.958876 CATGAGCTGCTGCCTTGTGA 60.959 55.000 7.01 0.00 40.80 3.58
1431 4478 0.959372 ATGAGCTGCTGCCTTGTGAC 60.959 55.000 7.01 0.00 40.80 3.67
1432 4479 2.282040 AGCTGCTGCCTTGTGACC 60.282 61.111 12.44 0.00 40.80 4.02
1433 4480 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
1434 4481 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
1435 4482 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
1436 4483 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
1437 4484 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1438 4485 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1454 4501 3.140325 TGAGGTCATGGTTTCAAGTCC 57.860 47.619 0.00 0.00 0.00 3.85
1455 4502 2.711009 TGAGGTCATGGTTTCAAGTCCT 59.289 45.455 0.00 0.00 0.00 3.85
1456 4503 3.077359 GAGGTCATGGTTTCAAGTCCTG 58.923 50.000 0.00 0.00 0.00 3.86
1457 4504 2.162681 GGTCATGGTTTCAAGTCCTGG 58.837 52.381 0.00 0.00 0.00 4.45
1458 4505 2.224769 GGTCATGGTTTCAAGTCCTGGA 60.225 50.000 0.00 0.00 0.00 3.86
1459 4506 3.486383 GTCATGGTTTCAAGTCCTGGAA 58.514 45.455 0.00 0.00 0.00 3.53
1460 4507 3.888930 GTCATGGTTTCAAGTCCTGGAAA 59.111 43.478 0.00 0.00 0.00 3.13
1476 4523 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
1477 4524 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
1478 4525 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
1479 4526 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
1480 4527 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
1481 4528 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
1482 4529 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
1483 4530 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
1484 4531 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
1485 4532 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
1486 4533 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
1487 4534 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
1488 4535 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
1489 4536 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
1490 4537 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
1491 4538 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
1492 4539 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1493 4540 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1494 4541 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1495 4542 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1496 4543 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1497 4544 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1498 4545 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1499 4546 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1500 4547 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1501 4548 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1502 4549 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1503 4550 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1504 4551 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1505 4552 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1506 4553 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1507 4554 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1508 4555 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1509 4556 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1510 4557 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1511 4558 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1512 4559 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1513 4560 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1518 4565 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1519 4566 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1520 4567 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1521 4568 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1522 4569 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1523 4570 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1524 4571 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1525 4572 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1526 4573 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1527 4574 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1528 4575 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1529 4576 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1530 4577 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1531 4578 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1532 4579 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1533 4580 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1534 4581 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1535 4582 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1536 4583 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1537 4584 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1562 4609 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1563 4610 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1564 4611 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1565 4612 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
1566 4613 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1567 4614 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1568 4615 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
1569 4616 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
1570 4617 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
1571 4618 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
1704 4751 3.379240 TGTTTGTTTGCATCATTGACCG 58.621 40.909 0.00 0.00 0.00 4.79
1775 4822 1.525535 ATTGAGCTCCGGATGCTGC 60.526 57.895 26.44 17.42 41.30 5.25
2013 5061 7.173218 CACGGTATGCTTTTGGTATCATCTTAT 59.827 37.037 0.00 0.00 0.00 1.73
2510 5567 0.319641 GGAGCGACCGTCTTTCACTT 60.320 55.000 0.00 0.00 0.00 3.16
2712 5769 1.469703 CGCTGAAGATGGTGATGCAAA 59.530 47.619 0.00 0.00 0.00 3.68
2827 5902 2.833338 GGCTCTAGATGCAGATGAGGAT 59.167 50.000 13.76 0.00 0.00 3.24
3606 9606 7.967854 TGTCGATTTGAGCAAAATTATTGTAGG 59.032 33.333 0.00 0.00 38.64 3.18
3609 9609 8.128582 CGATTTGAGCAAAATTATTGTAGGCTA 58.871 33.333 0.00 0.00 38.64 3.93
3990 10011 3.193056 ACTGAAACCTCTAGGCGTACTTC 59.807 47.826 0.00 0.00 39.32 3.01
4073 10094 4.529769 TGCCATGGATTTTCATTGTTGGTA 59.470 37.500 18.40 0.00 0.00 3.25
4125 10149 2.783832 GCAACTTTGCTGACGAAAAGTC 59.216 45.455 6.70 0.00 46.12 3.01
4126 10150 3.363178 CAACTTTGCTGACGAAAAGTCC 58.637 45.455 1.62 0.00 46.12 3.85
4127 10151 2.639065 ACTTTGCTGACGAAAAGTCCA 58.361 42.857 0.00 0.00 44.04 4.02
4128 10152 3.214328 ACTTTGCTGACGAAAAGTCCAT 58.786 40.909 0.00 0.00 44.04 3.41
4129 10153 3.632145 ACTTTGCTGACGAAAAGTCCATT 59.368 39.130 0.00 0.00 44.04 3.16
4130 10154 4.261197 ACTTTGCTGACGAAAAGTCCATTC 60.261 41.667 0.00 0.00 44.04 2.67
4131 10155 6.434172 ACTTTGCTGACGAAAAGTCCATTCT 61.434 40.000 0.00 0.00 44.04 2.40
4132 10156 8.378509 ACTTTGCTGACGAAAAGTCCATTCTG 62.379 42.308 0.00 0.00 44.04 3.02
4135 10159 3.188895 GACGAAAAGTCCATTCTGCAC 57.811 47.619 0.00 0.00 43.95 4.57
4136 10160 1.880027 ACGAAAAGTCCATTCTGCACC 59.120 47.619 0.00 0.00 0.00 5.01
4137 10161 1.200020 CGAAAAGTCCATTCTGCACCC 59.800 52.381 0.00 0.00 0.00 4.61
4138 10162 1.200020 GAAAAGTCCATTCTGCACCCG 59.800 52.381 0.00 0.00 0.00 5.28
4139 10163 0.400213 AAAGTCCATTCTGCACCCGA 59.600 50.000 0.00 0.00 0.00 5.14
4140 10164 0.036010 AAGTCCATTCTGCACCCGAG 60.036 55.000 0.00 0.00 0.00 4.63
4141 10165 2.109126 GTCCATTCTGCACCCGAGC 61.109 63.158 0.00 0.00 0.00 5.03
4142 10166 2.270205 CCATTCTGCACCCGAGCT 59.730 61.111 0.00 0.00 34.99 4.09
4143 10167 1.817099 CCATTCTGCACCCGAGCTC 60.817 63.158 2.73 2.73 34.99 4.09
4144 10168 1.078918 CATTCTGCACCCGAGCTCA 60.079 57.895 15.40 0.00 34.99 4.26
4145 10169 0.463295 CATTCTGCACCCGAGCTCAT 60.463 55.000 15.40 0.00 34.99 2.90
4146 10170 1.123077 ATTCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
4147 10171 1.123077 TTCTGCACCCGAGCTCATAT 58.877 50.000 15.40 0.00 34.99 1.78
4148 10172 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
4149 10173 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
4164 10188 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
4165 10189 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
4166 10190 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
4167 10191 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
4168 10192 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
4169 10193 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
4170 10194 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
4171 10195 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
4172 10196 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
4173 10197 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
4174 10198 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
4175 10199 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
4176 10200 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
4236 10260 9.921637 TTTGAGACAAACATTAACAAAAGTTCT 57.078 25.926 0.00 0.00 0.00 3.01
4242 10266 9.083080 ACAAACATTAACAAAAGTTCTAAGTGC 57.917 29.630 0.00 0.00 0.00 4.40
4243 10267 8.539674 CAAACATTAACAAAAGTTCTAAGTGCC 58.460 33.333 0.00 0.00 0.00 5.01
4244 10268 7.582667 ACATTAACAAAAGTTCTAAGTGCCT 57.417 32.000 0.00 0.00 0.00 4.75
4245 10269 7.425606 ACATTAACAAAAGTTCTAAGTGCCTG 58.574 34.615 0.00 0.00 0.00 4.85
4246 10270 3.990318 ACAAAAGTTCTAAGTGCCTGC 57.010 42.857 0.00 0.00 0.00 4.85
4247 10271 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
4248 10272 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
4249 10273 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
4250 10274 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
4251 10275 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
4252 10276 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
4253 10277 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
4254 10278 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
4255 10279 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
4256 10280 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
4257 10281 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
4258 10282 1.680735 AGTGCCTGCAAAAATTCGTCA 59.319 42.857 0.00 0.00 0.00 4.35
4259 10283 2.297033 AGTGCCTGCAAAAATTCGTCAT 59.703 40.909 0.00 0.00 0.00 3.06
4260 10284 2.409378 GTGCCTGCAAAAATTCGTCATG 59.591 45.455 0.00 0.00 0.00 3.07
4261 10285 2.295629 TGCCTGCAAAAATTCGTCATGA 59.704 40.909 0.00 0.00 0.00 3.07
4262 10286 3.243670 TGCCTGCAAAAATTCGTCATGAA 60.244 39.130 0.00 0.00 41.81 2.57
4263 10287 3.740321 GCCTGCAAAAATTCGTCATGAAA 59.260 39.130 0.00 0.00 40.71 2.69
4264 10288 4.389687 GCCTGCAAAAATTCGTCATGAAAT 59.610 37.500 0.00 0.00 40.71 2.17
4265 10289 5.445010 GCCTGCAAAAATTCGTCATGAAATC 60.445 40.000 0.00 0.00 40.71 2.17
4266 10290 5.634439 CCTGCAAAAATTCGTCATGAAATCA 59.366 36.000 0.00 0.00 40.71 2.57
4267 10291 6.400303 CCTGCAAAAATTCGTCATGAAATCAC 60.400 38.462 0.00 0.00 40.71 3.06
4268 10292 5.981915 TGCAAAAATTCGTCATGAAATCACA 59.018 32.000 0.00 0.00 40.71 3.58
4269 10293 6.645827 TGCAAAAATTCGTCATGAAATCACAT 59.354 30.769 0.00 0.00 40.71 3.21
4270 10294 7.171167 TGCAAAAATTCGTCATGAAATCACATT 59.829 29.630 0.00 0.00 40.71 2.71
4271 10295 7.685304 GCAAAAATTCGTCATGAAATCACATTC 59.315 33.333 0.00 0.00 40.71 2.67
4272 10296 7.816945 AAAATTCGTCATGAAATCACATTCC 57.183 32.000 0.00 0.00 40.71 3.01
4273 10297 6.764308 AATTCGTCATGAAATCACATTCCT 57.236 33.333 0.00 0.00 40.71 3.36
4274 10298 7.864108 AATTCGTCATGAAATCACATTCCTA 57.136 32.000 0.00 0.00 40.71 2.94
4275 10299 6.908870 TTCGTCATGAAATCACATTCCTAG 57.091 37.500 0.00 0.00 32.37 3.02
4276 10300 6.220726 TCGTCATGAAATCACATTCCTAGA 57.779 37.500 0.00 0.00 0.00 2.43
4277 10301 6.639563 TCGTCATGAAATCACATTCCTAGAA 58.360 36.000 0.00 0.00 0.00 2.10
4278 10302 6.758416 TCGTCATGAAATCACATTCCTAGAAG 59.242 38.462 0.00 0.00 0.00 2.85
4279 10303 6.018425 CGTCATGAAATCACATTCCTAGAAGG 60.018 42.308 0.00 0.00 36.46 3.46
4280 10304 5.824624 TCATGAAATCACATTCCTAGAAGGC 59.175 40.000 0.00 0.00 34.61 4.35
4281 10305 4.191544 TGAAATCACATTCCTAGAAGGCG 58.808 43.478 0.00 0.00 34.61 5.52
4282 10306 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
4283 10307 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
4284 10308 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
4285 10309 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
4286 10310 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
4287 10311 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
4288 10312 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
4289 10313 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
4290 10314 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
4314 10338 8.898983 AAAAACAAATTCAGTGCTTCAAAATG 57.101 26.923 0.00 0.00 0.00 2.32
4315 10339 5.662211 ACAAATTCAGTGCTTCAAAATGC 57.338 34.783 0.00 0.00 0.00 3.56
4316 10340 4.209703 ACAAATTCAGTGCTTCAAAATGCG 59.790 37.500 0.00 0.00 0.00 4.73
4317 10341 3.648339 ATTCAGTGCTTCAAAATGCGT 57.352 38.095 0.00 0.00 0.00 5.24
4318 10342 3.435105 TTCAGTGCTTCAAAATGCGTT 57.565 38.095 0.00 0.00 0.00 4.84
4319 10343 3.435105 TCAGTGCTTCAAAATGCGTTT 57.565 38.095 0.00 0.00 0.00 3.60
4320 10344 3.114809 TCAGTGCTTCAAAATGCGTTTG 58.885 40.909 4.29 5.51 46.86 2.93
4332 10356 6.902224 AAAATGCGTTTGAAAGTAGCTTTT 57.098 29.167 4.29 0.00 36.97 2.27
4333 10357 6.902224 AAATGCGTTTGAAAGTAGCTTTTT 57.098 29.167 2.32 0.00 33.49 1.94
4334 10358 6.510746 AATGCGTTTGAAAGTAGCTTTTTC 57.489 33.333 13.56 13.56 33.49 2.29
4335 10359 4.987832 TGCGTTTGAAAGTAGCTTTTTCA 58.012 34.783 17.30 17.30 41.40 2.69
4336 10360 5.034152 TGCGTTTGAAAGTAGCTTTTTCAG 58.966 37.500 19.21 12.77 43.22 3.02
4337 10361 5.163703 TGCGTTTGAAAGTAGCTTTTTCAGA 60.164 36.000 19.21 15.01 43.22 3.27
4338 10362 5.396654 GCGTTTGAAAGTAGCTTTTTCAGAG 59.603 40.000 19.21 16.17 43.22 3.35
4339 10363 6.487103 CGTTTGAAAGTAGCTTTTTCAGAGT 58.513 36.000 19.21 0.00 43.22 3.24
4340 10364 7.627340 CGTTTGAAAGTAGCTTTTTCAGAGTA 58.373 34.615 19.21 8.08 43.22 2.59
4341 10365 7.583040 CGTTTGAAAGTAGCTTTTTCAGAGTAC 59.417 37.037 19.21 15.67 43.22 2.73
4342 10366 8.613482 GTTTGAAAGTAGCTTTTTCAGAGTACT 58.387 33.333 19.21 0.00 43.22 2.73
4343 10367 8.732746 TTGAAAGTAGCTTTTTCAGAGTACTT 57.267 30.769 19.21 5.95 43.22 2.24
4344 10368 8.732746 TGAAAGTAGCTTTTTCAGAGTACTTT 57.267 30.769 17.30 11.32 41.25 2.66
4345 10369 9.174166 TGAAAGTAGCTTTTTCAGAGTACTTTT 57.826 29.630 17.30 0.00 39.58 2.27
4372 10396 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
4373 10397 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
4374 10398 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
4375 10399 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
4376 10400 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
4377 10401 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
4378 10402 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
4379 10403 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
4380 10404 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
4381 10405 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
4382 10406 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
4383 10407 4.396166 CACGCCTTCTAGGAATGTGATTTT 59.604 41.667 0.00 0.00 37.67 1.82
4384 10408 4.636206 ACGCCTTCTAGGAATGTGATTTTC 59.364 41.667 0.00 0.00 37.67 2.29
4385 10409 4.635765 CGCCTTCTAGGAATGTGATTTTCA 59.364 41.667 0.00 0.00 37.67 2.69
4386 10410 5.447818 CGCCTTCTAGGAATGTGATTTTCAC 60.448 44.000 0.69 0.69 42.09 3.18
4387 10411 5.447818 GCCTTCTAGGAATGTGATTTTCACG 60.448 44.000 3.44 0.00 43.61 4.35
4388 10412 5.874810 CCTTCTAGGAATGTGATTTTCACGA 59.125 40.000 3.44 0.00 43.61 4.35
4389 10413 6.183360 CCTTCTAGGAATGTGATTTTCACGAC 60.183 42.308 3.44 0.00 43.61 4.34
4390 10414 9.246468 CCTTCTAGGAATGTGATTTTCACGACG 62.246 44.444 0.00 0.00 43.61 5.12
4399 10423 5.354692 GTGATTTTCACGACGAATTTTTGC 58.645 37.500 0.00 0.00 37.67 3.68
4400 10424 5.037385 TGATTTTCACGACGAATTTTTGCA 58.963 33.333 0.00 0.00 32.32 4.08
4401 10425 5.172951 TGATTTTCACGACGAATTTTTGCAG 59.827 36.000 0.00 0.00 32.32 4.41
4402 10426 2.679355 TCACGACGAATTTTTGCAGG 57.321 45.000 0.00 0.00 0.00 4.85
4403 10427 1.052287 CACGACGAATTTTTGCAGGC 58.948 50.000 0.00 0.00 0.00 4.85
4404 10428 0.665835 ACGACGAATTTTTGCAGGCA 59.334 45.000 0.00 0.00 0.00 4.75
4405 10429 1.052287 CGACGAATTTTTGCAGGCAC 58.948 50.000 0.00 0.00 0.00 5.01
4406 10430 1.334960 CGACGAATTTTTGCAGGCACT 60.335 47.619 0.00 0.00 43.88 4.40
4407 10431 2.742774 GACGAATTTTTGCAGGCACTT 58.257 42.857 0.00 0.00 34.60 3.16
4408 10432 3.608241 CGACGAATTTTTGCAGGCACTTA 60.608 43.478 0.00 0.00 34.60 2.24
4409 10433 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
4410 10434 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
4411 10435 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
4412 10436 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
4413 10437 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
4414 10438 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
4415 10439 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
4416 10440 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
4417 10441 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
4418 10442 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
4419 10443 3.315191 TGCAGGCACTTAGAACTTTTGTC 59.685 43.478 0.00 0.00 34.60 3.18
4420 10444 3.315191 GCAGGCACTTAGAACTTTTGTCA 59.685 43.478 0.00 0.00 34.60 3.58
4421 10445 4.202010 GCAGGCACTTAGAACTTTTGTCAA 60.202 41.667 0.00 0.00 34.60 3.18
4422 10446 5.507985 GCAGGCACTTAGAACTTTTGTCAAT 60.508 40.000 0.00 0.00 34.60 2.57
4423 10447 5.916883 CAGGCACTTAGAACTTTTGTCAATG 59.083 40.000 0.00 0.00 34.60 2.82
4424 10448 5.594317 AGGCACTTAGAACTTTTGTCAATGT 59.406 36.000 0.00 0.00 27.25 2.71
4425 10449 6.096846 AGGCACTTAGAACTTTTGTCAATGTT 59.903 34.615 4.72 4.72 27.25 2.71
4426 10450 6.756542 GGCACTTAGAACTTTTGTCAATGTTT 59.243 34.615 6.10 0.00 31.96 2.83
4427 10451 7.043391 GGCACTTAGAACTTTTGTCAATGTTTC 60.043 37.037 6.10 1.04 31.96 2.78
4428 10452 7.487829 GCACTTAGAACTTTTGTCAATGTTTCA 59.512 33.333 6.10 0.00 31.96 2.69
4429 10453 8.798153 CACTTAGAACTTTTGTCAATGTTTCAC 58.202 33.333 6.10 0.00 31.96 3.18
4430 10454 8.739972 ACTTAGAACTTTTGTCAATGTTTCACT 58.260 29.630 6.10 3.16 31.96 3.41
4431 10455 9.226345 CTTAGAACTTTTGTCAATGTTTCACTC 57.774 33.333 6.10 0.00 31.96 3.51
4432 10456 7.156876 AGAACTTTTGTCAATGTTTCACTCA 57.843 32.000 6.10 0.00 31.96 3.41
4433 10457 7.601856 AGAACTTTTGTCAATGTTTCACTCAA 58.398 30.769 6.10 0.00 31.96 3.02
4434 10458 8.087750 AGAACTTTTGTCAATGTTTCACTCAAA 58.912 29.630 6.10 0.00 31.96 2.69
4435 10459 8.600449 AACTTTTGTCAATGTTTCACTCAAAA 57.400 26.923 0.00 0.00 34.04 2.44
4436 10460 8.600449 ACTTTTGTCAATGTTTCACTCAAAAA 57.400 26.923 0.00 0.00 34.51 1.94
4481 10505 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
4482 10506 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
4483 10507 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
4484 10508 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
4485 10509 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
4502 10526 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
4503 10527 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
4504 10528 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
4505 10529 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
4506 10530 1.001746 CATATGAGCTCGGGTGCAGAT 59.998 52.381 9.64 0.00 34.99 2.90
4507 10531 1.123077 TATGAGCTCGGGTGCAGATT 58.877 50.000 9.64 0.00 34.99 2.40
4508 10532 1.123077 ATGAGCTCGGGTGCAGATTA 58.877 50.000 9.64 0.00 34.99 1.75
4509 10533 0.461548 TGAGCTCGGGTGCAGATTAG 59.538 55.000 9.64 0.00 34.99 1.73
4510 10534 0.878086 GAGCTCGGGTGCAGATTAGC 60.878 60.000 0.00 0.00 34.99 3.09
4511 10535 1.889573 GCTCGGGTGCAGATTAGCC 60.890 63.158 0.00 0.00 0.00 3.93
4514 10538 3.272334 GGGTGCAGATTAGCCGCG 61.272 66.667 0.00 0.00 0.00 6.46
4515 10539 2.511600 GGTGCAGATTAGCCGCGT 60.512 61.111 4.92 0.00 0.00 6.01
4516 10540 2.526120 GGTGCAGATTAGCCGCGTC 61.526 63.158 4.92 0.00 0.00 5.19
4517 10541 2.202878 TGCAGATTAGCCGCGTCC 60.203 61.111 4.92 0.00 0.00 4.79
4518 10542 2.967615 GCAGATTAGCCGCGTCCC 60.968 66.667 4.92 0.00 0.00 4.46
4519 10543 2.815308 CAGATTAGCCGCGTCCCT 59.185 61.111 4.92 0.35 0.00 4.20
4520 10544 1.144057 CAGATTAGCCGCGTCCCTT 59.856 57.895 4.92 0.00 0.00 3.95
4521 10545 0.462047 CAGATTAGCCGCGTCCCTTT 60.462 55.000 4.92 0.00 0.00 3.11
4522 10546 0.462047 AGATTAGCCGCGTCCCTTTG 60.462 55.000 4.92 0.00 0.00 2.77
4523 10547 2.048312 GATTAGCCGCGTCCCTTTGC 62.048 60.000 4.92 0.00 0.00 3.68
4524 10548 2.536997 ATTAGCCGCGTCCCTTTGCT 62.537 55.000 4.92 7.22 36.11 3.91
4525 10549 3.950794 TAGCCGCGTCCCTTTGCTG 62.951 63.158 12.99 0.00 33.63 4.41
4527 10551 2.436646 CCGCGTCCCTTTGCTGAT 60.437 61.111 4.92 0.00 0.00 2.90
4528 10552 2.753966 CCGCGTCCCTTTGCTGATG 61.754 63.158 4.92 0.00 0.00 3.07
4529 10553 2.034879 CGCGTCCCTTTGCTGATGT 61.035 57.895 0.00 0.00 0.00 3.06
4530 10554 1.796796 GCGTCCCTTTGCTGATGTC 59.203 57.895 0.00 0.00 0.00 3.06
4531 10555 0.674895 GCGTCCCTTTGCTGATGTCT 60.675 55.000 0.00 0.00 0.00 3.41
4532 10556 1.405526 GCGTCCCTTTGCTGATGTCTA 60.406 52.381 0.00 0.00 0.00 2.59
4538 10562 3.181493 CCCTTTGCTGATGTCTATTGCAC 60.181 47.826 0.00 0.00 33.13 4.57
4553 10577 7.665559 TGTCTATTGCACTTCAAGAATTTAGGT 59.334 33.333 0.00 0.00 38.22 3.08
4556 10580 6.560253 TTGCACTTCAAGAATTTAGGTCTC 57.440 37.500 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.465871 ACACATCGCTTTGCCAATTTTT 58.534 36.364 0.00 0.00 0.00 1.94
10 11 3.110447 ACACATCGCTTTGCCAATTTT 57.890 38.095 0.00 0.00 0.00 1.82
11 12 2.801679 CAACACATCGCTTTGCCAATTT 59.198 40.909 0.00 0.00 0.00 1.82
12 13 2.224018 ACAACACATCGCTTTGCCAATT 60.224 40.909 0.00 0.00 0.00 2.32
13 14 1.340889 ACAACACATCGCTTTGCCAAT 59.659 42.857 0.00 0.00 0.00 3.16
14 15 0.743688 ACAACACATCGCTTTGCCAA 59.256 45.000 0.00 0.00 0.00 4.52
15 16 0.030504 CACAACACATCGCTTTGCCA 59.969 50.000 0.00 0.00 0.00 4.92
16 17 0.030638 ACACAACACATCGCTTTGCC 59.969 50.000 0.00 0.00 0.00 4.52
17 18 2.679355 TACACAACACATCGCTTTGC 57.321 45.000 0.00 0.00 0.00 3.68
18 19 5.287274 TGTTTTTACACAACACATCGCTTTG 59.713 36.000 0.00 0.00 0.00 2.77
19 20 5.403246 TGTTTTTACACAACACATCGCTTT 58.597 33.333 0.00 0.00 0.00 3.51
20 21 4.987832 TGTTTTTACACAACACATCGCTT 58.012 34.783 0.00 0.00 0.00 4.68
21 22 4.624336 TGTTTTTACACAACACATCGCT 57.376 36.364 0.00 0.00 0.00 4.93
22 23 4.737765 ACATGTTTTTACACAACACATCGC 59.262 37.500 0.00 0.00 36.97 4.58
23 24 6.804534 AACATGTTTTTACACAACACATCG 57.195 33.333 4.92 0.00 36.97 3.84
24 25 8.751335 CCTTAACATGTTTTTACACAACACATC 58.249 33.333 17.78 0.00 36.97 3.06
25 26 8.254508 ACCTTAACATGTTTTTACACAACACAT 58.745 29.630 17.78 0.00 36.97 3.21
26 27 7.603651 ACCTTAACATGTTTTTACACAACACA 58.396 30.769 17.78 0.00 36.97 3.72
27 28 8.468720 AACCTTAACATGTTTTTACACAACAC 57.531 30.769 17.78 0.00 36.97 3.32
28 29 8.926710 CAAACCTTAACATGTTTTTACACAACA 58.073 29.630 17.78 0.00 38.49 3.33
29 30 9.141400 TCAAACCTTAACATGTTTTTACACAAC 57.859 29.630 17.78 0.00 32.60 3.32
30 31 9.706691 TTCAAACCTTAACATGTTTTTACACAA 57.293 25.926 17.78 1.88 32.60 3.33
31 32 9.706691 TTTCAAACCTTAACATGTTTTTACACA 57.293 25.926 17.78 0.00 32.60 3.72
35 36 9.308318 GCTCTTTCAAACCTTAACATGTTTTTA 57.692 29.630 17.78 0.00 32.60 1.52
36 37 8.040727 AGCTCTTTCAAACCTTAACATGTTTTT 58.959 29.630 17.78 8.25 32.60 1.94
37 38 7.492344 CAGCTCTTTCAAACCTTAACATGTTTT 59.508 33.333 17.78 1.51 32.60 2.43
38 39 6.980397 CAGCTCTTTCAAACCTTAACATGTTT 59.020 34.615 17.78 0.95 35.15 2.83
39 40 6.507023 CAGCTCTTTCAAACCTTAACATGTT 58.493 36.000 16.68 16.68 0.00 2.71
40 41 5.507985 GCAGCTCTTTCAAACCTTAACATGT 60.508 40.000 0.00 0.00 0.00 3.21
41 42 4.919754 GCAGCTCTTTCAAACCTTAACATG 59.080 41.667 0.00 0.00 0.00 3.21
42 43 4.584325 TGCAGCTCTTTCAAACCTTAACAT 59.416 37.500 0.00 0.00 0.00 2.71
43 44 3.951037 TGCAGCTCTTTCAAACCTTAACA 59.049 39.130 0.00 0.00 0.00 2.41
44 45 4.568152 TGCAGCTCTTTCAAACCTTAAC 57.432 40.909 0.00 0.00 0.00 2.01
45 46 5.301551 TGAATGCAGCTCTTTCAAACCTTAA 59.698 36.000 0.00 0.00 36.35 1.85
46 47 4.826733 TGAATGCAGCTCTTTCAAACCTTA 59.173 37.500 0.00 0.00 36.35 2.69
47 48 3.638160 TGAATGCAGCTCTTTCAAACCTT 59.362 39.130 0.00 0.00 36.35 3.50
48 49 3.225104 TGAATGCAGCTCTTTCAAACCT 58.775 40.909 0.00 0.00 36.35 3.50
49 50 3.648339 TGAATGCAGCTCTTTCAAACC 57.352 42.857 0.00 0.00 36.35 3.27
52 53 6.747125 TGTATTTTGAATGCAGCTCTTTCAA 58.253 32.000 16.20 16.20 43.06 2.69
53 54 6.330004 TGTATTTTGAATGCAGCTCTTTCA 57.670 33.333 0.00 0.00 37.15 2.69
54 55 7.642071 TTTGTATTTTGAATGCAGCTCTTTC 57.358 32.000 0.00 0.00 0.00 2.62
55 56 7.874016 TCATTTGTATTTTGAATGCAGCTCTTT 59.126 29.630 0.00 0.00 32.28 2.52
56 57 7.380536 TCATTTGTATTTTGAATGCAGCTCTT 58.619 30.769 0.00 0.00 32.28 2.85
57 58 6.927416 TCATTTGTATTTTGAATGCAGCTCT 58.073 32.000 0.00 0.00 32.28 4.09
58 59 7.585286 TTCATTTGTATTTTGAATGCAGCTC 57.415 32.000 0.00 0.00 32.28 4.09
59 60 7.966246 TTTCATTTGTATTTTGAATGCAGCT 57.034 28.000 0.00 0.00 32.28 4.24
60 61 7.217447 GCATTTCATTTGTATTTTGAATGCAGC 59.783 33.333 11.51 0.00 35.87 5.25
61 62 8.447833 AGCATTTCATTTGTATTTTGAATGCAG 58.552 29.630 16.83 0.00 36.92 4.41
62 63 8.231161 CAGCATTTCATTTGTATTTTGAATGCA 58.769 29.630 16.83 0.00 36.92 3.96
63 64 7.217447 GCAGCATTTCATTTGTATTTTGAATGC 59.783 33.333 9.08 9.08 35.95 3.56
64 65 8.447833 AGCAGCATTTCATTTGTATTTTGAATG 58.552 29.630 0.00 0.00 33.24 2.67
65 66 8.447833 CAGCAGCATTTCATTTGTATTTTGAAT 58.552 29.630 0.00 0.00 0.00 2.57
66 67 7.656542 TCAGCAGCATTTCATTTGTATTTTGAA 59.343 29.630 0.00 0.00 0.00 2.69
67 68 7.153315 TCAGCAGCATTTCATTTGTATTTTGA 58.847 30.769 0.00 0.00 0.00 2.69
68 69 7.354025 TCAGCAGCATTTCATTTGTATTTTG 57.646 32.000 0.00 0.00 0.00 2.44
69 70 7.966246 TTCAGCAGCATTTCATTTGTATTTT 57.034 28.000 0.00 0.00 0.00 1.82
70 71 7.966246 TTTCAGCAGCATTTCATTTGTATTT 57.034 28.000 0.00 0.00 0.00 1.40
71 72 8.556213 AATTTCAGCAGCATTTCATTTGTATT 57.444 26.923 0.00 0.00 0.00 1.89
72 73 8.556213 AAATTTCAGCAGCATTTCATTTGTAT 57.444 26.923 0.00 0.00 0.00 2.29
73 74 7.966246 AAATTTCAGCAGCATTTCATTTGTA 57.034 28.000 0.00 0.00 0.00 2.41
74 75 6.870971 AAATTTCAGCAGCATTTCATTTGT 57.129 29.167 0.00 0.00 0.00 2.83
75 76 7.356540 TCAAAATTTCAGCAGCATTTCATTTG 58.643 30.769 0.00 0.00 0.00 2.32
76 77 7.499321 TCAAAATTTCAGCAGCATTTCATTT 57.501 28.000 0.00 0.00 0.00 2.32
77 78 7.499321 TTCAAAATTTCAGCAGCATTTCATT 57.501 28.000 0.00 0.00 0.00 2.57
78 79 7.681939 ATTCAAAATTTCAGCAGCATTTCAT 57.318 28.000 0.00 0.00 0.00 2.57
79 80 7.499321 AATTCAAAATTTCAGCAGCATTTCA 57.501 28.000 0.00 0.00 0.00 2.69
80 81 8.791355 AAAATTCAAAATTTCAGCAGCATTTC 57.209 26.923 0.00 0.00 0.00 2.17
81 82 9.026074 CAAAAATTCAAAATTTCAGCAGCATTT 57.974 25.926 0.00 0.00 0.00 2.32
82 83 8.192110 ACAAAAATTCAAAATTTCAGCAGCATT 58.808 25.926 0.00 0.00 0.00 3.56
83 84 7.708998 ACAAAAATTCAAAATTTCAGCAGCAT 58.291 26.923 0.00 0.00 0.00 3.79
84 85 7.086230 ACAAAAATTCAAAATTTCAGCAGCA 57.914 28.000 0.00 0.00 0.00 4.41
85 86 7.974243 AACAAAAATTCAAAATTTCAGCAGC 57.026 28.000 0.00 0.00 0.00 5.25
118 119 7.288810 AGAACCAACTATCATTGCAGAAAAA 57.711 32.000 0.00 0.00 0.00 1.94
119 120 6.899393 AGAACCAACTATCATTGCAGAAAA 57.101 33.333 0.00 0.00 0.00 2.29
120 121 6.489700 TGAAGAACCAACTATCATTGCAGAAA 59.510 34.615 0.00 0.00 0.00 2.52
121 122 6.003326 TGAAGAACCAACTATCATTGCAGAA 58.997 36.000 0.00 0.00 0.00 3.02
122 123 5.559770 TGAAGAACCAACTATCATTGCAGA 58.440 37.500 0.00 0.00 0.00 4.26
123 124 5.885230 TGAAGAACCAACTATCATTGCAG 57.115 39.130 0.00 0.00 0.00 4.41
124 125 6.012658 GTTGAAGAACCAACTATCATTGCA 57.987 37.500 0.00 0.00 42.20 4.08
138 139 2.758423 AGGGTGTGTTTGGTTGAAGAAC 59.242 45.455 0.00 0.00 0.00 3.01
139 140 3.094484 AGGGTGTGTTTGGTTGAAGAA 57.906 42.857 0.00 0.00 0.00 2.52
140 141 2.818751 AGGGTGTGTTTGGTTGAAGA 57.181 45.000 0.00 0.00 0.00 2.87
141 142 4.204012 TCTTAGGGTGTGTTTGGTTGAAG 58.796 43.478 0.00 0.00 0.00 3.02
142 143 4.204012 CTCTTAGGGTGTGTTTGGTTGAA 58.796 43.478 0.00 0.00 0.00 2.69
143 144 3.201266 ACTCTTAGGGTGTGTTTGGTTGA 59.799 43.478 0.00 0.00 0.00 3.18
144 145 3.551846 ACTCTTAGGGTGTGTTTGGTTG 58.448 45.455 0.00 0.00 0.00 3.77
145 146 3.434596 GGACTCTTAGGGTGTGTTTGGTT 60.435 47.826 0.00 0.00 0.00 3.67
146 147 2.105993 GGACTCTTAGGGTGTGTTTGGT 59.894 50.000 0.00 0.00 0.00 3.67
147 148 2.372172 AGGACTCTTAGGGTGTGTTTGG 59.628 50.000 0.00 0.00 0.00 3.28
148 149 3.325135 AGAGGACTCTTAGGGTGTGTTTG 59.675 47.826 0.00 0.00 36.31 2.93
149 150 3.588569 AGAGGACTCTTAGGGTGTGTTT 58.411 45.455 0.00 0.00 36.31 2.83
150 151 3.261818 AGAGGACTCTTAGGGTGTGTT 57.738 47.619 0.00 0.00 36.31 3.32
175 176 0.930310 GCGTGATGCTCAGCGAAATA 59.070 50.000 0.00 0.00 41.73 1.40
195 196 0.105658 ATAGCTCCACCCTTCGGCTA 60.106 55.000 0.00 0.00 39.35 3.93
196 197 1.383248 ATAGCTCCACCCTTCGGCT 60.383 57.895 0.00 0.00 37.08 5.52
209 210 1.212935 CAGGTTGCCCCTTACATAGCT 59.787 52.381 0.00 0.00 42.73 3.32
276 277 3.150949 CTGGTCAGCTGGTGTGGA 58.849 61.111 15.13 0.00 0.00 4.02
695 943 4.441792 ACTGCCAAACTGGATTGTTTTTC 58.558 39.130 0.00 0.00 40.96 2.29
701 952 5.587388 ATTGATACTGCCAAACTGGATTG 57.413 39.130 0.00 0.00 40.96 2.67
702 953 7.902920 ATTATTGATACTGCCAAACTGGATT 57.097 32.000 0.00 0.00 40.96 3.01
703 954 7.255242 CGAATTATTGATACTGCCAAACTGGAT 60.255 37.037 0.00 0.00 40.96 3.41
729 981 3.149196 TCAAACCACAGAGGAATTGAGC 58.851 45.455 6.02 0.00 39.81 4.26
914 2368 2.678580 GGGCGGGCCAAGCTAAAA 60.679 61.111 16.76 0.00 37.98 1.52
935 2418 2.537401 GAGTAGCGTTGATTTAGGCGT 58.463 47.619 0.00 0.00 34.29 5.68
1037 4081 1.007734 GAGACGCGACACAGGACAA 60.008 57.895 15.93 0.00 0.00 3.18
1077 4121 2.759114 CCACCACCAGTCCATGCT 59.241 61.111 0.00 0.00 0.00 3.79
1181 4228 3.448660 GCTTGAGGAAAAATGTAGCCCAT 59.551 43.478 0.00 0.00 34.36 4.00
1191 4238 3.066203 GTCGGAACAAGCTTGAGGAAAAA 59.934 43.478 32.50 8.77 0.00 1.94
1239 4286 0.035820 TGCCTGGAACAACGGGTATC 60.036 55.000 0.00 0.00 38.70 2.24
1348 4395 4.431131 CCATCGGGCCTGCCTTGT 62.431 66.667 6.73 0.00 36.10 3.16
1409 4456 0.251033 ACAAGGCAGCAGCTCATGAA 60.251 50.000 0.00 0.00 41.70 2.57
1410 4457 0.958876 CACAAGGCAGCAGCTCATGA 60.959 55.000 0.00 0.00 41.70 3.07
1411 4458 0.958876 TCACAAGGCAGCAGCTCATG 60.959 55.000 0.00 0.58 41.70 3.07
1412 4459 0.959372 GTCACAAGGCAGCAGCTCAT 60.959 55.000 0.00 0.00 41.70 2.90
1413 4460 1.598962 GTCACAAGGCAGCAGCTCA 60.599 57.895 0.00 0.00 41.70 4.26
1414 4461 2.331132 GGTCACAAGGCAGCAGCTC 61.331 63.158 0.00 0.00 41.70 4.09
1415 4462 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
1416 4463 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
1417 4464 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
1418 4465 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1419 4466 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1420 4467 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1421 4468 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1433 4480 3.331889 AGGACTTGAAACCATGACCTCAT 59.668 43.478 0.00 0.00 31.81 2.90
1434 4481 2.711009 AGGACTTGAAACCATGACCTCA 59.289 45.455 0.00 0.00 31.81 3.86
1435 4482 3.077359 CAGGACTTGAAACCATGACCTC 58.923 50.000 0.00 0.00 33.86 3.85
1436 4483 2.224867 CCAGGACTTGAAACCATGACCT 60.225 50.000 0.00 0.00 35.47 3.85
1437 4484 2.162681 CCAGGACTTGAAACCATGACC 58.837 52.381 0.00 0.00 0.00 4.02
1438 4485 3.140325 TCCAGGACTTGAAACCATGAC 57.860 47.619 0.00 0.00 0.00 3.06
1439 4486 3.874383 TTCCAGGACTTGAAACCATGA 57.126 42.857 0.00 0.00 0.00 3.07
1440 4487 3.636300 TGTTTCCAGGACTTGAAACCATG 59.364 43.478 19.88 0.00 46.13 3.66
1441 4488 3.891366 CTGTTTCCAGGACTTGAAACCAT 59.109 43.478 19.88 0.00 46.13 3.55
1442 4489 3.287222 CTGTTTCCAGGACTTGAAACCA 58.713 45.455 19.88 11.10 46.13 3.67
1443 4490 2.034685 GCTGTTTCCAGGACTTGAAACC 59.965 50.000 19.88 7.59 46.13 3.27
1444 4491 2.034685 GGCTGTTTCCAGGACTTGAAAC 59.965 50.000 17.34 17.34 46.61 2.78
1445 4492 2.091885 AGGCTGTTTCCAGGACTTGAAA 60.092 45.455 0.00 0.00 39.22 2.69
1446 4493 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1447 4494 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1448 4495 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1449 4496 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1450 4497 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
1451 4498 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
1452 4499 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
1453 4500 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
1454 4501 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
1466 4513 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
1467 4514 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
1468 4515 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
1469 4516 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
1470 4517 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
1471 4518 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1472 4519 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1473 4520 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1474 4521 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1475 4522 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1476 4523 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1477 4524 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1478 4525 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1479 4526 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1480 4527 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1481 4528 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1482 4529 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1483 4530 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1484 4531 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1485 4532 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1486 4533 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1487 4534 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1488 4535 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1489 4536 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1490 4537 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1491 4538 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1492 4539 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1502 4549 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1503 4550 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1504 4551 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1505 4552 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1506 4553 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1507 4554 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1508 4555 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1509 4556 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1510 4557 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1511 4558 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1512 4559 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1513 4560 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1514 4561 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1515 4562 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1516 4563 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1517 4564 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1518 4565 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1519 4566 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1520 4567 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1532 4579 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1535 4582 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1536 4583 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1537 4584 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1538 4585 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1544 4591 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1545 4592 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1546 4593 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1547 4594 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1548 4595 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1572 4619 7.545489 TGCATACATATGACAGCAATGAAAAA 58.455 30.769 10.38 0.00 35.75 1.94
1573 4620 7.098074 TGCATACATATGACAGCAATGAAAA 57.902 32.000 10.38 0.00 35.75 2.29
1574 4621 6.696441 TGCATACATATGACAGCAATGAAA 57.304 33.333 10.38 0.00 35.75 2.69
1678 4725 5.750067 GTCAATGATGCAAACAAACAGAACT 59.250 36.000 0.00 0.00 0.00 3.01
1704 4751 6.317642 TGCACCATAGTAACATACAATTGGAC 59.682 38.462 10.83 0.00 32.20 4.02
1833 4880 4.017126 AGTAGCAGAAAATAACTTGGGCC 58.983 43.478 0.00 0.00 0.00 5.80
2712 5769 4.141846 ACTCGACCTGATGTTGAATGCTAT 60.142 41.667 0.00 0.00 36.92 2.97
2827 5902 8.783660 AATACTGTATGTCATCTTCTTCCCTA 57.216 34.615 0.22 0.00 0.00 3.53
3922 9943 1.336755 CAAAACCCACCAGTACACTGC 59.663 52.381 3.75 0.00 42.47 4.40
3990 10011 6.381801 ACCATGACTTTTGAGAAATAAAGCG 58.618 36.000 0.00 0.00 35.31 4.68
4073 10094 0.746659 GCAAGTTTCAGCCACCAGTT 59.253 50.000 0.00 0.00 0.00 3.16
4124 10148 2.244117 GAGCTCGGGTGCAGAATGGA 62.244 60.000 0.00 0.00 35.86 3.41
4125 10149 1.817099 GAGCTCGGGTGCAGAATGG 60.817 63.158 0.00 0.00 35.86 3.16
4126 10150 0.463295 ATGAGCTCGGGTGCAGAATG 60.463 55.000 9.64 0.00 40.87 2.67
4127 10151 1.123077 TATGAGCTCGGGTGCAGAAT 58.877 50.000 9.64 0.00 34.99 2.40
4128 10152 1.123077 ATATGAGCTCGGGTGCAGAA 58.877 50.000 9.64 0.00 34.99 3.02
4129 10153 0.390492 CATATGAGCTCGGGTGCAGA 59.610 55.000 9.64 0.00 34.99 4.26
4130 10154 1.226686 GCATATGAGCTCGGGTGCAG 61.227 60.000 23.72 7.32 34.99 4.41
4131 10155 1.227645 GCATATGAGCTCGGGTGCA 60.228 57.895 23.72 2.95 34.99 4.57
4132 10156 1.070445 AGCATATGAGCTCGGGTGC 59.930 57.895 22.13 22.13 42.18 5.01
4149 10173 3.242413 CGATTTTACTGTTCATGCGGGAG 60.242 47.826 0.00 0.00 0.00 4.30
4150 10174 2.675844 CGATTTTACTGTTCATGCGGGA 59.324 45.455 0.00 0.00 0.00 5.14
4151 10175 2.675844 TCGATTTTACTGTTCATGCGGG 59.324 45.455 0.00 0.00 0.00 6.13
4152 10176 4.335082 TTCGATTTTACTGTTCATGCGG 57.665 40.909 0.00 0.00 0.00 5.69
4153 10177 6.667981 TTTTTCGATTTTACTGTTCATGCG 57.332 33.333 0.00 0.00 0.00 4.73
4210 10234 9.921637 AGAACTTTTGTTAATGTTTGTCTCAAA 57.078 25.926 0.00 0.00 43.66 2.69
4216 10240 9.083080 GCACTTAGAACTTTTGTTAATGTTTGT 57.917 29.630 0.00 0.00 43.66 2.83
4217 10241 8.539674 GGCACTTAGAACTTTTGTTAATGTTTG 58.460 33.333 0.00 0.00 43.66 2.93
4218 10242 8.474831 AGGCACTTAGAACTTTTGTTAATGTTT 58.525 29.630 0.00 0.00 38.17 2.83
4219 10243 7.920682 CAGGCACTTAGAACTTTTGTTAATGTT 59.079 33.333 0.00 0.00 39.14 2.71
4220 10244 7.425606 CAGGCACTTAGAACTTTTGTTAATGT 58.574 34.615 0.00 0.00 39.14 2.71
4221 10245 6.363357 GCAGGCACTTAGAACTTTTGTTAATG 59.637 38.462 0.00 0.00 39.14 1.90
4222 10246 6.040391 TGCAGGCACTTAGAACTTTTGTTAAT 59.960 34.615 0.00 0.00 39.14 1.40
4223 10247 5.358442 TGCAGGCACTTAGAACTTTTGTTAA 59.642 36.000 0.00 0.00 39.14 2.01
4224 10248 4.884744 TGCAGGCACTTAGAACTTTTGTTA 59.115 37.500 0.00 0.00 39.14 2.41
4225 10249 3.699038 TGCAGGCACTTAGAACTTTTGTT 59.301 39.130 0.00 0.00 41.41 2.83
4226 10250 3.287222 TGCAGGCACTTAGAACTTTTGT 58.713 40.909 0.00 0.00 34.60 2.83
4227 10251 3.988379 TGCAGGCACTTAGAACTTTTG 57.012 42.857 0.00 0.00 34.60 2.44
4228 10252 5.337578 TTTTGCAGGCACTTAGAACTTTT 57.662 34.783 0.00 0.00 34.60 2.27
4229 10253 5.337578 TTTTTGCAGGCACTTAGAACTTT 57.662 34.783 0.00 0.00 34.60 2.66
4230 10254 5.535753 ATTTTTGCAGGCACTTAGAACTT 57.464 34.783 0.00 0.00 34.60 2.66
4231 10255 5.532557 GAATTTTTGCAGGCACTTAGAACT 58.467 37.500 0.00 0.00 34.60 3.01
4232 10256 4.382754 CGAATTTTTGCAGGCACTTAGAAC 59.617 41.667 0.00 0.00 34.60 3.01
4233 10257 4.037446 ACGAATTTTTGCAGGCACTTAGAA 59.963 37.500 0.00 0.00 34.60 2.10
4234 10258 3.568007 ACGAATTTTTGCAGGCACTTAGA 59.432 39.130 0.00 0.00 34.60 2.10
4235 10259 3.900941 ACGAATTTTTGCAGGCACTTAG 58.099 40.909 0.00 0.00 34.60 2.18
4236 10260 3.316588 TGACGAATTTTTGCAGGCACTTA 59.683 39.130 0.00 0.00 34.60 2.24
4237 10261 2.100584 TGACGAATTTTTGCAGGCACTT 59.899 40.909 0.00 0.00 34.60 3.16
4238 10262 1.680735 TGACGAATTTTTGCAGGCACT 59.319 42.857 0.00 0.00 43.88 4.40
4239 10263 2.132740 TGACGAATTTTTGCAGGCAC 57.867 45.000 0.00 0.00 0.00 5.01
4240 10264 2.295629 TCATGACGAATTTTTGCAGGCA 59.704 40.909 0.00 0.00 0.00 4.75
4241 10265 2.945278 TCATGACGAATTTTTGCAGGC 58.055 42.857 0.00 0.00 0.00 4.85
4242 10266 5.634439 TGATTTCATGACGAATTTTTGCAGG 59.366 36.000 0.00 0.00 32.32 4.85
4243 10267 6.144241 TGTGATTTCATGACGAATTTTTGCAG 59.856 34.615 0.00 0.00 32.32 4.41
4244 10268 5.981915 TGTGATTTCATGACGAATTTTTGCA 59.018 32.000 0.00 0.00 32.32 4.08
4245 10269 6.450845 TGTGATTTCATGACGAATTTTTGC 57.549 33.333 0.00 0.00 32.32 3.68
4246 10270 8.164153 GGAATGTGATTTCATGACGAATTTTTG 58.836 33.333 0.00 0.00 32.32 2.44
4247 10271 8.090214 AGGAATGTGATTTCATGACGAATTTTT 58.910 29.630 0.00 0.00 32.32 1.94
4248 10272 7.605449 AGGAATGTGATTTCATGACGAATTTT 58.395 30.769 0.00 0.00 32.32 1.82
4249 10273 7.161773 AGGAATGTGATTTCATGACGAATTT 57.838 32.000 0.00 0.00 32.32 1.82
4250 10274 6.764308 AGGAATGTGATTTCATGACGAATT 57.236 33.333 0.00 0.00 32.32 2.17
4251 10275 7.275183 TCTAGGAATGTGATTTCATGACGAAT 58.725 34.615 0.00 0.00 32.32 3.34
4252 10276 6.639563 TCTAGGAATGTGATTTCATGACGAA 58.360 36.000 0.00 0.00 0.00 3.85
4253 10277 6.220726 TCTAGGAATGTGATTTCATGACGA 57.779 37.500 0.00 0.00 0.00 4.20
4254 10278 6.018425 CCTTCTAGGAATGTGATTTCATGACG 60.018 42.308 0.00 0.00 37.67 4.35
4255 10279 6.238593 GCCTTCTAGGAATGTGATTTCATGAC 60.239 42.308 0.00 0.00 37.67 3.06
4256 10280 5.824624 GCCTTCTAGGAATGTGATTTCATGA 59.175 40.000 0.00 0.00 37.67 3.07
4257 10281 5.277683 CGCCTTCTAGGAATGTGATTTCATG 60.278 44.000 0.00 0.00 37.67 3.07
4258 10282 4.818546 CGCCTTCTAGGAATGTGATTTCAT 59.181 41.667 0.00 0.00 37.67 2.57
4259 10283 4.191544 CGCCTTCTAGGAATGTGATTTCA 58.808 43.478 0.00 0.00 37.67 2.69
4260 10284 4.034510 CACGCCTTCTAGGAATGTGATTTC 59.965 45.833 0.00 0.00 37.67 2.17
4261 10285 3.941483 CACGCCTTCTAGGAATGTGATTT 59.059 43.478 0.00 0.00 37.67 2.17
4262 10286 3.535561 CACGCCTTCTAGGAATGTGATT 58.464 45.455 0.00 0.00 37.67 2.57
4263 10287 2.158900 CCACGCCTTCTAGGAATGTGAT 60.159 50.000 12.05 0.00 37.67 3.06
4264 10288 1.207089 CCACGCCTTCTAGGAATGTGA 59.793 52.381 12.05 0.00 37.67 3.58
4265 10289 1.656652 CCACGCCTTCTAGGAATGTG 58.343 55.000 0.00 2.20 37.67 3.21
4266 10290 0.107654 GCCACGCCTTCTAGGAATGT 60.108 55.000 0.00 0.00 37.67 2.71
4267 10291 0.107703 TGCCACGCCTTCTAGGAATG 60.108 55.000 0.00 0.00 37.67 2.67
4268 10292 0.618458 TTGCCACGCCTTCTAGGAAT 59.382 50.000 0.00 0.00 37.67 3.01
4269 10293 0.398696 TTTGCCACGCCTTCTAGGAA 59.601 50.000 0.00 0.00 37.67 3.36
4270 10294 0.398696 TTTTGCCACGCCTTCTAGGA 59.601 50.000 0.00 0.00 37.67 2.94
4271 10295 1.243902 TTTTTGCCACGCCTTCTAGG 58.756 50.000 0.00 0.00 38.80 3.02
4289 10313 7.485595 GCATTTTGAAGCACTGAATTTGTTTTT 59.514 29.630 0.00 0.00 0.00 1.94
4290 10314 6.968335 GCATTTTGAAGCACTGAATTTGTTTT 59.032 30.769 0.00 0.00 0.00 2.43
4291 10315 6.488817 GCATTTTGAAGCACTGAATTTGTTT 58.511 32.000 0.00 0.00 0.00 2.83
4292 10316 5.276963 CGCATTTTGAAGCACTGAATTTGTT 60.277 36.000 0.00 0.00 0.00 2.83
4293 10317 4.209703 CGCATTTTGAAGCACTGAATTTGT 59.790 37.500 0.00 0.00 0.00 2.83
4294 10318 4.209703 ACGCATTTTGAAGCACTGAATTTG 59.790 37.500 0.00 0.00 0.00 2.32
4295 10319 4.370917 ACGCATTTTGAAGCACTGAATTT 58.629 34.783 0.00 0.00 0.00 1.82
4296 10320 3.981211 ACGCATTTTGAAGCACTGAATT 58.019 36.364 0.00 0.00 0.00 2.17
4297 10321 3.648339 ACGCATTTTGAAGCACTGAAT 57.352 38.095 0.00 0.00 0.00 2.57
4298 10322 3.435105 AACGCATTTTGAAGCACTGAA 57.565 38.095 0.00 0.00 0.00 3.02
4299 10323 3.114809 CAAACGCATTTTGAAGCACTGA 58.885 40.909 2.24 0.00 46.76 3.41
4300 10324 3.492725 CAAACGCATTTTGAAGCACTG 57.507 42.857 2.24 0.00 46.76 3.66
4308 10332 5.888412 AAGCTACTTTCAAACGCATTTTG 57.112 34.783 0.00 2.03 45.38 2.44
4309 10333 6.902224 AAAAGCTACTTTCAAACGCATTTT 57.098 29.167 0.00 0.00 31.99 1.82
4310 10334 6.533367 TGAAAAAGCTACTTTCAAACGCATTT 59.467 30.769 17.31 0.00 39.28 2.32
4311 10335 6.039616 TGAAAAAGCTACTTTCAAACGCATT 58.960 32.000 17.31 0.00 39.28 3.56
4312 10336 5.587289 TGAAAAAGCTACTTTCAAACGCAT 58.413 33.333 17.31 0.00 39.28 4.73
4313 10337 4.987832 TGAAAAAGCTACTTTCAAACGCA 58.012 34.783 17.31 0.00 39.28 5.24
4314 10338 5.270853 TCTGAAAAAGCTACTTTCAAACGC 58.729 37.500 19.14 0.00 41.10 4.84
4315 10339 6.487103 ACTCTGAAAAAGCTACTTTCAAACG 58.513 36.000 19.14 14.03 41.10 3.60
4316 10340 8.613482 AGTACTCTGAAAAAGCTACTTTCAAAC 58.387 33.333 19.14 15.25 41.10 2.93
4317 10341 8.732746 AGTACTCTGAAAAAGCTACTTTCAAA 57.267 30.769 19.14 9.92 41.10 2.69
4318 10342 8.732746 AAGTACTCTGAAAAAGCTACTTTCAA 57.267 30.769 19.14 12.10 41.10 2.69
4319 10343 8.732746 AAAGTACTCTGAAAAAGCTACTTTCA 57.267 30.769 18.13 18.13 39.79 2.69
4353 10377 1.202830 TCCTAGAAGGCGTGGCAAAAA 60.203 47.619 0.00 0.00 34.61 1.94
4354 10378 0.398696 TCCTAGAAGGCGTGGCAAAA 59.601 50.000 0.00 0.00 34.61 2.44
4355 10379 0.398696 TTCCTAGAAGGCGTGGCAAA 59.601 50.000 0.00 0.00 34.61 3.68
4356 10380 0.618458 ATTCCTAGAAGGCGTGGCAA 59.382 50.000 0.00 0.00 34.61 4.52
4357 10381 0.107703 CATTCCTAGAAGGCGTGGCA 60.108 55.000 0.00 0.00 34.61 4.92
4358 10382 0.107654 ACATTCCTAGAAGGCGTGGC 60.108 55.000 0.00 0.00 34.61 5.01
4359 10383 1.207089 TCACATTCCTAGAAGGCGTGG 59.793 52.381 0.00 0.00 34.61 4.94
4360 10384 2.672961 TCACATTCCTAGAAGGCGTG 57.327 50.000 0.00 0.00 34.61 5.34
4361 10385 3.914426 AATCACATTCCTAGAAGGCGT 57.086 42.857 0.00 0.00 34.61 5.68
4362 10386 4.635765 TGAAAATCACATTCCTAGAAGGCG 59.364 41.667 0.00 0.00 34.61 5.52
4363 10387 5.884771 GTGAAAATCACATTCCTAGAAGGC 58.115 41.667 5.65 0.00 46.22 4.35
4376 10400 5.052040 TGCAAAAATTCGTCGTGAAAATCAC 60.052 36.000 0.39 0.39 43.65 3.06
4377 10401 5.037385 TGCAAAAATTCGTCGTGAAAATCA 58.963 33.333 0.00 0.00 40.71 2.57
4378 10402 5.387342 CCTGCAAAAATTCGTCGTGAAAATC 60.387 40.000 0.00 0.00 40.71 2.17
4379 10403 4.444056 CCTGCAAAAATTCGTCGTGAAAAT 59.556 37.500 0.00 0.00 40.71 1.82
4380 10404 3.794028 CCTGCAAAAATTCGTCGTGAAAA 59.206 39.130 0.00 0.00 40.71 2.29
4381 10405 3.367607 CCTGCAAAAATTCGTCGTGAAA 58.632 40.909 0.00 0.00 40.71 2.69
4382 10406 2.856720 GCCTGCAAAAATTCGTCGTGAA 60.857 45.455 0.00 0.00 41.81 3.18
4383 10407 1.334599 GCCTGCAAAAATTCGTCGTGA 60.335 47.619 0.00 0.00 0.00 4.35
4384 10408 1.052287 GCCTGCAAAAATTCGTCGTG 58.948 50.000 0.00 0.00 0.00 4.35
4385 10409 0.665835 TGCCTGCAAAAATTCGTCGT 59.334 45.000 0.00 0.00 0.00 4.34
4386 10410 1.052287 GTGCCTGCAAAAATTCGTCG 58.948 50.000 0.00 0.00 0.00 5.12
4387 10411 2.422276 AGTGCCTGCAAAAATTCGTC 57.578 45.000 0.00 0.00 0.00 4.20
4388 10412 2.888834 AAGTGCCTGCAAAAATTCGT 57.111 40.000 0.00 0.00 0.00 3.85
4389 10413 4.159377 TCTAAGTGCCTGCAAAAATTCG 57.841 40.909 0.00 0.00 0.00 3.34
4390 10414 5.532557 AGTTCTAAGTGCCTGCAAAAATTC 58.467 37.500 0.00 0.00 0.00 2.17
4391 10415 5.535753 AGTTCTAAGTGCCTGCAAAAATT 57.464 34.783 0.00 0.00 0.00 1.82
4392 10416 5.535753 AAGTTCTAAGTGCCTGCAAAAAT 57.464 34.783 0.00 0.00 0.00 1.82
4393 10417 5.337578 AAAGTTCTAAGTGCCTGCAAAAA 57.662 34.783 0.00 0.00 0.00 1.94
4394 10418 5.108517 CAAAAGTTCTAAGTGCCTGCAAAA 58.891 37.500 0.00 0.00 0.00 2.44
4395 10419 4.159506 ACAAAAGTTCTAAGTGCCTGCAAA 59.840 37.500 0.00 0.00 0.00 3.68
4396 10420 3.699038 ACAAAAGTTCTAAGTGCCTGCAA 59.301 39.130 0.00 0.00 0.00 4.08
4397 10421 3.287222 ACAAAAGTTCTAAGTGCCTGCA 58.713 40.909 0.00 0.00 0.00 4.41
4398 10422 3.315191 TGACAAAAGTTCTAAGTGCCTGC 59.685 43.478 0.00 0.00 0.00 4.85
4399 10423 5.499139 TTGACAAAAGTTCTAAGTGCCTG 57.501 39.130 0.00 0.00 0.00 4.85
4400 10424 5.594317 ACATTGACAAAAGTTCTAAGTGCCT 59.406 36.000 0.00 0.00 0.00 4.75
4401 10425 5.831997 ACATTGACAAAAGTTCTAAGTGCC 58.168 37.500 0.00 0.00 0.00 5.01
4402 10426 7.487829 TGAAACATTGACAAAAGTTCTAAGTGC 59.512 33.333 9.09 0.00 0.00 4.40
4403 10427 8.798153 GTGAAACATTGACAAAAGTTCTAAGTG 58.202 33.333 9.09 0.00 36.32 3.16
4404 10428 8.739972 AGTGAAACATTGACAAAAGTTCTAAGT 58.260 29.630 9.09 0.00 41.43 2.24
4405 10429 9.226345 GAGTGAAACATTGACAAAAGTTCTAAG 57.774 33.333 9.09 0.00 41.43 2.18
4406 10430 8.735315 TGAGTGAAACATTGACAAAAGTTCTAA 58.265 29.630 9.09 0.00 41.43 2.10
4407 10431 8.275015 TGAGTGAAACATTGACAAAAGTTCTA 57.725 30.769 9.09 1.45 41.43 2.10
4408 10432 7.156876 TGAGTGAAACATTGACAAAAGTTCT 57.843 32.000 9.09 4.05 41.43 3.01
4409 10433 7.810766 TTGAGTGAAACATTGACAAAAGTTC 57.189 32.000 9.09 5.78 41.43 3.01
4410 10434 8.600449 TTTTGAGTGAAACATTGACAAAAGTT 57.400 26.923 0.00 0.00 41.43 2.66
4411 10435 8.600449 TTTTTGAGTGAAACATTGACAAAAGT 57.400 26.923 0.00 0.00 41.43 2.66
4458 10482 5.627367 CCGCATGAACAGTAAAATCGAAAAA 59.373 36.000 0.00 0.00 0.00 1.94
4459 10483 5.150683 CCGCATGAACAGTAAAATCGAAAA 58.849 37.500 0.00 0.00 0.00 2.29
4460 10484 4.378978 CCCGCATGAACAGTAAAATCGAAA 60.379 41.667 0.00 0.00 0.00 3.46
4461 10485 3.126171 CCCGCATGAACAGTAAAATCGAA 59.874 43.478 0.00 0.00 0.00 3.71
4462 10486 2.675844 CCCGCATGAACAGTAAAATCGA 59.324 45.455 0.00 0.00 0.00 3.59
4463 10487 2.675844 TCCCGCATGAACAGTAAAATCG 59.324 45.455 0.00 0.00 0.00 3.34
4464 10488 3.487544 GCTCCCGCATGAACAGTAAAATC 60.488 47.826 0.00 0.00 35.78 2.17
4465 10489 2.423538 GCTCCCGCATGAACAGTAAAAT 59.576 45.455 0.00 0.00 35.78 1.82
4466 10490 1.810151 GCTCCCGCATGAACAGTAAAA 59.190 47.619 0.00 0.00 35.78 1.52
4467 10491 1.271108 TGCTCCCGCATGAACAGTAAA 60.271 47.619 0.00 0.00 42.25 2.01
4468 10492 0.323302 TGCTCCCGCATGAACAGTAA 59.677 50.000 0.00 0.00 42.25 2.24
4469 10493 1.979262 TGCTCCCGCATGAACAGTA 59.021 52.632 0.00 0.00 42.25 2.74
4470 10494 2.749682 TGCTCCCGCATGAACAGT 59.250 55.556 0.00 0.00 42.25 3.55
4485 10509 1.226686 CTGCACCCGAGCTCATATGC 61.227 60.000 20.59 20.59 34.99 3.14
4486 10510 0.390492 TCTGCACCCGAGCTCATATG 59.610 55.000 15.40 9.02 34.99 1.78
4487 10511 1.346062 ATCTGCACCCGAGCTCATAT 58.654 50.000 15.40 0.00 34.99 1.78
4488 10512 1.123077 AATCTGCACCCGAGCTCATA 58.877 50.000 15.40 0.00 34.99 2.15
4489 10513 1.069823 CTAATCTGCACCCGAGCTCAT 59.930 52.381 15.40 0.00 34.99 2.90
4490 10514 0.461548 CTAATCTGCACCCGAGCTCA 59.538 55.000 15.40 0.00 34.99 4.26
4491 10515 0.878086 GCTAATCTGCACCCGAGCTC 60.878 60.000 2.73 2.73 34.99 4.09
4492 10516 1.144936 GCTAATCTGCACCCGAGCT 59.855 57.895 0.00 0.00 34.99 4.09
4493 10517 1.889573 GGCTAATCTGCACCCGAGC 60.890 63.158 0.00 0.00 34.04 5.03
4494 10518 1.592669 CGGCTAATCTGCACCCGAG 60.593 63.158 0.00 0.00 41.34 4.63
4495 10519 2.499205 CGGCTAATCTGCACCCGA 59.501 61.111 0.00 0.00 41.34 5.14
4496 10520 3.272334 GCGGCTAATCTGCACCCG 61.272 66.667 0.00 0.00 46.35 5.28
4501 10525 2.925162 AAGGGACGCGGCTAATCTGC 62.925 60.000 13.91 0.00 43.66 4.26
4502 10526 0.462047 AAAGGGACGCGGCTAATCTG 60.462 55.000 13.91 0.00 0.00 2.90
4503 10527 0.462047 CAAAGGGACGCGGCTAATCT 60.462 55.000 13.91 1.32 0.00 2.40
4504 10528 2.014594 CAAAGGGACGCGGCTAATC 58.985 57.895 13.91 0.00 0.00 1.75
4505 10529 2.112815 GCAAAGGGACGCGGCTAAT 61.113 57.895 13.91 0.00 0.00 1.73
4506 10530 2.744709 GCAAAGGGACGCGGCTAA 60.745 61.111 13.91 0.00 0.00 3.09
4507 10531 3.702048 AGCAAAGGGACGCGGCTA 61.702 61.111 13.91 0.00 31.67 3.93
4510 10534 2.436646 ATCAGCAAAGGGACGCGG 60.437 61.111 12.47 0.00 0.00 6.46
4511 10535 1.970917 GACATCAGCAAAGGGACGCG 61.971 60.000 3.53 3.53 0.00 6.01
4512 10536 0.674895 AGACATCAGCAAAGGGACGC 60.675 55.000 0.00 0.00 0.00 5.19
4513 10537 2.672961 TAGACATCAGCAAAGGGACG 57.327 50.000 0.00 0.00 0.00 4.79
4514 10538 3.065925 GCAATAGACATCAGCAAAGGGAC 59.934 47.826 0.00 0.00 0.00 4.46
4515 10539 3.282021 GCAATAGACATCAGCAAAGGGA 58.718 45.455 0.00 0.00 0.00 4.20
4516 10540 3.018856 TGCAATAGACATCAGCAAAGGG 58.981 45.455 0.00 0.00 31.42 3.95
4517 10541 3.693085 AGTGCAATAGACATCAGCAAAGG 59.307 43.478 0.00 0.00 36.91 3.11
4518 10542 4.959596 AGTGCAATAGACATCAGCAAAG 57.040 40.909 0.00 0.00 36.91 2.77
4519 10543 4.761227 TGAAGTGCAATAGACATCAGCAAA 59.239 37.500 0.00 0.00 36.91 3.68
4520 10544 4.325972 TGAAGTGCAATAGACATCAGCAA 58.674 39.130 0.00 0.00 36.91 3.91
4521 10545 3.941573 TGAAGTGCAATAGACATCAGCA 58.058 40.909 0.00 0.00 0.00 4.41
4522 10546 4.633126 TCTTGAAGTGCAATAGACATCAGC 59.367 41.667 0.00 0.00 35.59 4.26
4523 10547 6.732531 TTCTTGAAGTGCAATAGACATCAG 57.267 37.500 0.00 0.00 35.59 2.90
4524 10548 7.692460 AATTCTTGAAGTGCAATAGACATCA 57.308 32.000 0.00 0.00 35.59 3.07
4525 10549 9.713740 CTAAATTCTTGAAGTGCAATAGACATC 57.286 33.333 0.00 0.00 35.59 3.06
4526 10550 8.680903 CCTAAATTCTTGAAGTGCAATAGACAT 58.319 33.333 0.00 0.00 35.59 3.06
4527 10551 7.665559 ACCTAAATTCTTGAAGTGCAATAGACA 59.334 33.333 0.00 0.00 35.59 3.41
4528 10552 8.045176 ACCTAAATTCTTGAAGTGCAATAGAC 57.955 34.615 0.00 0.00 35.59 2.59
4529 10553 8.103305 AGACCTAAATTCTTGAAGTGCAATAGA 58.897 33.333 0.00 0.00 35.59 1.98
4530 10554 8.273780 AGACCTAAATTCTTGAAGTGCAATAG 57.726 34.615 0.00 0.00 35.59 1.73
4531 10555 7.336931 GGAGACCTAAATTCTTGAAGTGCAATA 59.663 37.037 0.00 0.00 35.59 1.90
4532 10556 6.151817 GGAGACCTAAATTCTTGAAGTGCAAT 59.848 38.462 0.00 0.00 35.59 3.56
4538 10562 6.204882 ACAAACGGAGACCTAAATTCTTGAAG 59.795 38.462 0.00 0.00 0.00 3.02
4553 10577 4.011023 TGGAAAAAGTTGACAAACGGAGA 58.989 39.130 0.00 0.00 41.45 3.71
4556 10580 4.104696 ACTGGAAAAAGTTGACAAACGG 57.895 40.909 0.00 0.00 41.45 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.