Multiple sequence alignment - TraesCS1A01G115400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G115400 chr1A 100.000 2663 0 0 1 2663 119738620 119741282 0.000000e+00 4918
1 TraesCS1A01G115400 chr1A 85.470 117 11 5 2549 2662 427037314 427037201 1.670000e-22 117
2 TraesCS1A01G115400 chr1D 90.904 1825 79 33 86 1867 112632451 112634231 0.000000e+00 2370
3 TraesCS1A01G115400 chr1D 88.350 103 10 2 2562 2663 6634248 6634147 3.600000e-24 122
4 TraesCS1A01G115400 chr1B 93.786 1400 59 13 480 1866 172256354 172257738 0.000000e+00 2078
5 TraesCS1A01G115400 chr1B 94.737 114 3 2 389 502 172256216 172256326 9.800000e-40 174
6 TraesCS1A01G115400 chr1B 95.699 93 3 1 1 92 27355652 27355744 5.940000e-32 148
7 TraesCS1A01G115400 chr1B 95.652 92 4 0 1 92 429967820 429967729 5.940000e-32 148
8 TraesCS1A01G115400 chr1B 91.753 97 6 2 2568 2663 625061075 625061170 1.660000e-27 134
9 TraesCS1A01G115400 chr1B 88.462 104 12 0 2560 2663 394100271 394100374 2.780000e-25 126
10 TraesCS1A01G115400 chr3B 85.014 367 39 9 2117 2479 134239432 134239786 2.520000e-95 359
11 TraesCS1A01G115400 chr3B 78.056 360 61 11 1234 1590 140131615 140131271 7.470000e-51 211
12 TraesCS1A01G115400 chr5D 82.825 361 49 11 2199 2551 51684117 51684472 7.160000e-81 311
13 TraesCS1A01G115400 chr5D 94.393 107 3 2 392 495 123451913 123451807 7.630000e-36 161
14 TraesCS1A01G115400 chr5D 92.473 93 6 1 2571 2663 389441914 389442005 5.980000e-27 132
15 TraesCS1A01G115400 chr7D 82.353 374 46 15 2199 2555 446985708 446986078 9.260000e-80 307
16 TraesCS1A01G115400 chr7D 83.904 292 42 5 2263 2553 562638487 562638200 9.390000e-70 274
17 TraesCS1A01G115400 chr7D 84.083 289 37 8 2270 2553 173582847 173582563 1.210000e-68 270
18 TraesCS1A01G115400 chr7D 94.059 101 6 0 395 495 583594904 583594804 1.280000e-33 154
19 TraesCS1A01G115400 chr7D 90.816 98 6 2 2566 2663 36519502 36519596 7.740000e-26 128
20 TraesCS1A01G115400 chr2D 76.846 596 87 36 2002 2551 424632762 424633352 3.350000e-74 289
21 TraesCS1A01G115400 chr2D 94.949 99 4 1 1 98 72591298 72591396 1.280000e-33 154
22 TraesCS1A01G115400 chr2D 96.703 91 3 0 1 91 72591157 72591247 4.590000e-33 152
23 TraesCS1A01G115400 chr7A 84.459 296 35 5 2266 2551 641044842 641044548 5.610000e-72 281
24 TraesCS1A01G115400 chr3D 84.643 280 39 4 2275 2551 468765454 468765176 2.610000e-70 276
25 TraesCS1A01G115400 chr3D 78.492 358 63 8 1234 1590 90743045 90742701 3.450000e-54 222
26 TraesCS1A01G115400 chr2A 81.646 316 51 7 2242 2551 38740310 38739996 3.400000e-64 255
27 TraesCS1A01G115400 chr3A 78.771 358 62 8 1234 1590 106835063 106834719 7.420000e-56 228
28 TraesCS1A01G115400 chr3A 96.703 91 3 0 1 91 431819425 431819515 4.590000e-33 152
29 TraesCS1A01G115400 chr5A 95.238 105 3 2 392 496 136393718 136393616 5.900000e-37 165
30 TraesCS1A01G115400 chr5A 94.175 103 4 2 395 495 118666260 118666158 3.550000e-34 156
31 TraesCS1A01G115400 chr6A 93.636 110 3 2 390 498 615433925 615434031 7.630000e-36 161
32 TraesCS1A01G115400 chr6A 93.396 106 4 3 391 495 146548510 146548613 1.280000e-33 154
33 TraesCS1A01G115400 chr2B 96.774 93 3 0 1 93 87184051 87183959 3.550000e-34 156
34 TraesCS1A01G115400 chr2B 95.652 92 4 0 1 92 631438291 631438382 5.940000e-32 148
35 TraesCS1A01G115400 chr6D 95.876 97 1 3 391 486 470603219 470603313 1.280000e-33 154
36 TraesCS1A01G115400 chr4B 96.703 91 3 0 1 91 499851867 499851777 4.590000e-33 152
37 TraesCS1A01G115400 chr5B 95.604 91 4 0 1 91 461147186 461147276 2.140000e-31 147
38 TraesCS1A01G115400 chrUn 92.857 98 4 2 2567 2663 47515969 47516064 3.570000e-29 139
39 TraesCS1A01G115400 chr4A 91.753 97 6 2 2568 2663 138267127 138267222 1.660000e-27 134
40 TraesCS1A01G115400 chr6B 89.000 100 11 0 2564 2663 7757131 7757230 1.000000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G115400 chr1A 119738620 119741282 2662 False 4918 4918 100.0000 1 2663 1 chr1A.!!$F1 2662
1 TraesCS1A01G115400 chr1D 112632451 112634231 1780 False 2370 2370 90.9040 86 1867 1 chr1D.!!$F1 1781
2 TraesCS1A01G115400 chr1B 172256216 172257738 1522 False 1126 2078 94.2615 389 1866 2 chr1B.!!$F4 1477
3 TraesCS1A01G115400 chr2D 424632762 424633352 590 False 289 289 76.8460 2002 2551 1 chr2D.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.041535 ATCCCTGCCAATTTGCTCCA 59.958 50.0 2.9 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1932 2037 0.036306 CCGGACCAGCCAGTAAAACT 59.964 55.0 0.0 0.0 35.94 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.534207 TTTGATGTGGATTTTGACTTGCT 57.466 34.783 0.00 0.00 0.00 3.91
23 24 4.508461 TGATGTGGATTTTGACTTGCTG 57.492 40.909 0.00 0.00 0.00 4.41
24 25 3.256383 TGATGTGGATTTTGACTTGCTGG 59.744 43.478 0.00 0.00 0.00 4.85
25 26 1.962807 TGTGGATTTTGACTTGCTGGG 59.037 47.619 0.00 0.00 0.00 4.45
26 27 1.273327 GTGGATTTTGACTTGCTGGGG 59.727 52.381 0.00 0.00 0.00 4.96
27 28 1.146774 TGGATTTTGACTTGCTGGGGA 59.853 47.619 0.00 0.00 0.00 4.81
28 29 2.225343 TGGATTTTGACTTGCTGGGGAT 60.225 45.455 0.00 0.00 0.00 3.85
29 30 2.833943 GGATTTTGACTTGCTGGGGATT 59.166 45.455 0.00 0.00 0.00 3.01
30 31 3.261643 GGATTTTGACTTGCTGGGGATTT 59.738 43.478 0.00 0.00 0.00 2.17
31 32 4.466015 GGATTTTGACTTGCTGGGGATTTA 59.534 41.667 0.00 0.00 0.00 1.40
32 33 5.046663 GGATTTTGACTTGCTGGGGATTTAA 60.047 40.000 0.00 0.00 0.00 1.52
33 34 6.352137 GGATTTTGACTTGCTGGGGATTTAAT 60.352 38.462 0.00 0.00 0.00 1.40
34 35 5.659440 TTTGACTTGCTGGGGATTTAATC 57.341 39.130 0.00 0.00 0.00 1.75
47 48 4.129380 GGATTTAATCCCTGCCAATTTGC 58.871 43.478 12.74 0.00 43.88 3.68
48 49 4.141642 GGATTTAATCCCTGCCAATTTGCT 60.142 41.667 12.74 0.00 43.88 3.91
49 50 4.470334 TTTAATCCCTGCCAATTTGCTC 57.530 40.909 2.90 0.00 0.00 4.26
50 51 1.197812 AATCCCTGCCAATTTGCTCC 58.802 50.000 2.90 0.00 0.00 4.70
51 52 0.041535 ATCCCTGCCAATTTGCTCCA 59.958 50.000 2.90 0.00 0.00 3.86
52 53 0.178938 TCCCTGCCAATTTGCTCCAA 60.179 50.000 2.90 0.00 0.00 3.53
53 54 0.686224 CCCTGCCAATTTGCTCCAAA 59.314 50.000 2.90 0.00 37.75 3.28
54 55 1.608801 CCCTGCCAATTTGCTCCAAAC 60.609 52.381 2.90 0.00 36.13 2.93
55 56 1.608801 CCTGCCAATTTGCTCCAAACC 60.609 52.381 2.90 0.00 36.13 3.27
56 57 0.396060 TGCCAATTTGCTCCAAACCC 59.604 50.000 2.90 0.00 36.13 4.11
57 58 0.321564 GCCAATTTGCTCCAAACCCC 60.322 55.000 0.00 0.00 36.13 4.95
58 59 1.351076 CCAATTTGCTCCAAACCCCT 58.649 50.000 0.00 0.00 36.13 4.79
59 60 1.699083 CCAATTTGCTCCAAACCCCTT 59.301 47.619 0.00 0.00 36.13 3.95
60 61 2.550639 CCAATTTGCTCCAAACCCCTTG 60.551 50.000 0.00 0.00 36.13 3.61
68 69 2.745379 CAAACCCCTTGGAACCCTG 58.255 57.895 0.00 0.00 34.81 4.45
69 70 0.105709 CAAACCCCTTGGAACCCTGT 60.106 55.000 0.00 0.00 34.81 4.00
70 71 0.105709 AAACCCCTTGGAACCCTGTG 60.106 55.000 0.00 0.00 34.81 3.66
71 72 2.018884 AACCCCTTGGAACCCTGTGG 62.019 60.000 0.00 0.00 34.81 4.17
72 73 2.160171 CCCCTTGGAACCCTGTGGA 61.160 63.158 0.00 0.00 34.81 4.02
73 74 1.725169 CCCCTTGGAACCCTGTGGAA 61.725 60.000 0.00 0.00 34.81 3.53
74 75 0.539669 CCCTTGGAACCCTGTGGAAC 60.540 60.000 0.00 0.00 34.81 3.62
75 76 0.539669 CCTTGGAACCCTGTGGAACC 60.540 60.000 0.00 0.00 34.36 3.62
76 77 0.889186 CTTGGAACCCTGTGGAACCG 60.889 60.000 0.00 0.00 34.36 4.44
77 78 1.346479 TTGGAACCCTGTGGAACCGA 61.346 55.000 0.00 0.00 34.36 4.69
78 79 1.346479 TGGAACCCTGTGGAACCGAA 61.346 55.000 0.00 0.00 34.36 4.30
79 80 0.887836 GGAACCCTGTGGAACCGAAC 60.888 60.000 0.00 0.00 34.36 3.95
80 81 0.179040 GAACCCTGTGGAACCGAACA 60.179 55.000 0.00 0.00 34.36 3.18
81 82 0.256464 AACCCTGTGGAACCGAACAA 59.744 50.000 0.00 0.00 34.36 2.83
82 83 0.179029 ACCCTGTGGAACCGAACAAG 60.179 55.000 0.00 0.00 34.36 3.16
83 84 0.889186 CCCTGTGGAACCGAACAAGG 60.889 60.000 0.00 0.00 34.36 3.61
84 85 1.515521 CCTGTGGAACCGAACAAGGC 61.516 60.000 0.00 0.00 34.36 4.35
89 90 1.271163 TGGAACCGAACAAGGCCTTAG 60.271 52.381 20.00 15.05 33.69 2.18
101 102 1.614241 GGCCTTAGGGTGCGAGAGAA 61.614 60.000 0.00 0.00 34.45 2.87
111 112 2.419297 GGTGCGAGAGAATTGACCTGAT 60.419 50.000 0.00 0.00 0.00 2.90
161 162 7.500141 TCCTCTTCAATTTGTATGATCGATCA 58.500 34.615 29.09 29.09 41.70 2.92
255 257 0.767375 AGCTCAGGGAAAGCAACAGA 59.233 50.000 0.00 0.00 42.35 3.41
261 263 0.822121 GGGAAAGCAACAGAACCGGT 60.822 55.000 0.00 0.00 0.00 5.28
284 286 2.092753 ACGGAGGAGCATTCATTCACAT 60.093 45.455 0.00 0.00 0.00 3.21
354 362 2.469516 GCCAGGGCATTCCGTTACG 61.470 63.158 5.20 0.00 41.52 3.18
358 366 2.398036 GGCATTCCGTTACGTGCG 59.602 61.111 11.53 2.41 38.43 5.34
365 373 3.620615 CCGTTACGTGCGGTGTATA 57.379 52.632 20.51 0.00 43.84 1.47
373 381 4.503767 ACGTGCGGTGTATAAATAAACG 57.496 40.909 0.00 0.00 34.85 3.60
519 577 0.926846 CTCTCTCCGATTTGAAGCGC 59.073 55.000 0.00 0.00 36.32 5.92
549 607 4.822026 AGACCTTTCTCAACGTCCATAAG 58.178 43.478 0.00 0.00 0.00 1.73
568 627 7.829211 TCCATAAGTTTTTGGAGAACCATCTAG 59.171 37.037 3.70 0.00 46.34 2.43
569 628 5.966742 AAGTTTTTGGAGAACCATCTAGC 57.033 39.130 0.00 0.00 46.34 3.42
570 629 5.248380 AGTTTTTGGAGAACCATCTAGCT 57.752 39.130 0.00 0.00 46.34 3.32
571 630 6.374417 AGTTTTTGGAGAACCATCTAGCTA 57.626 37.500 0.00 0.00 46.34 3.32
572 631 6.410540 AGTTTTTGGAGAACCATCTAGCTAG 58.589 40.000 15.01 15.01 46.34 3.42
573 632 4.408182 TTTGGAGAACCATCTAGCTAGC 57.592 45.455 16.35 6.62 46.34 3.42
599 664 6.104665 TCTGTTTCATTCTGAGACTATGCAG 58.895 40.000 0.00 0.00 33.20 4.41
662 727 0.962356 CCATCAAACTCCCTGCGCTT 60.962 55.000 9.73 0.00 0.00 4.68
663 728 0.169672 CATCAAACTCCCTGCGCTTG 59.830 55.000 9.73 2.53 0.00 4.01
664 729 0.250901 ATCAAACTCCCTGCGCTTGT 60.251 50.000 9.73 0.00 0.00 3.16
665 730 1.165907 TCAAACTCCCTGCGCTTGTG 61.166 55.000 9.73 0.27 0.00 3.33
666 731 1.152963 AAACTCCCTGCGCTTGTGT 60.153 52.632 9.73 0.95 0.00 3.72
667 732 1.447317 AAACTCCCTGCGCTTGTGTG 61.447 55.000 9.73 0.00 0.00 3.82
668 733 2.281070 CTCCCTGCGCTTGTGTGT 60.281 61.111 9.73 0.00 0.00 3.72
716 783 3.916392 CTGTCCGTCGACCTGTGCC 62.916 68.421 10.58 0.00 38.32 5.01
774 841 3.036783 GACGCTCGTGTCCGCTAGT 62.037 63.158 0.00 0.00 32.61 2.57
811 878 2.152699 CCGATCCGATACGATGCGC 61.153 63.158 0.00 0.00 0.00 6.09
863 930 2.202919 TGCACCGCATCCTCATCG 60.203 61.111 0.00 0.00 31.71 3.84
876 943 0.101219 CTCATCGCCATCTCGACACA 59.899 55.000 0.00 0.00 41.62 3.72
967 1034 2.525877 CCGTCCCCCGTCCCATAT 60.526 66.667 0.00 0.00 33.66 1.78
974 1041 0.850784 CCCCGTCCCATATTCCCTTT 59.149 55.000 0.00 0.00 0.00 3.11
975 1042 2.059490 CCCCGTCCCATATTCCCTTTA 58.941 52.381 0.00 0.00 0.00 1.85
981 1048 3.117776 GTCCCATATTCCCTTTACCCGTT 60.118 47.826 0.00 0.00 0.00 4.44
1113 1183 3.060602 CACCGTGAGTTCTTCTTCTTCC 58.939 50.000 0.00 0.00 0.00 3.46
1123 1196 1.462670 CTTCTTCTTCCTCTTGCACGC 59.537 52.381 0.00 0.00 0.00 5.34
1156 1229 2.806818 TCGCGGTGTCACTCTATCTATC 59.193 50.000 6.13 0.00 0.00 2.08
1165 1246 7.361371 GGTGTCACTCTATCTATCTATCAACCG 60.361 44.444 2.35 0.00 0.00 4.44
1191 1272 1.735920 CTCTGCTCTGCCGTGTGAC 60.736 63.158 0.00 0.00 0.00 3.67
1192 1273 3.108289 CTGCTCTGCCGTGTGACG 61.108 66.667 0.00 0.00 42.11 4.35
1725 1830 2.822827 CGTATGTAATTCGGCATTCGC 58.177 47.619 0.00 0.00 39.05 4.70
1870 1975 7.928706 ACATTTACCACACATCTCTATTAGAGC 59.071 37.037 14.75 0.00 42.04 4.09
1871 1976 7.418337 TTTACCACACATCTCTATTAGAGCA 57.582 36.000 14.75 5.77 42.04 4.26
1872 1977 7.603180 TTACCACACATCTCTATTAGAGCAT 57.397 36.000 14.75 7.56 42.04 3.79
1873 1978 6.095432 ACCACACATCTCTATTAGAGCATC 57.905 41.667 14.75 0.00 42.04 3.91
1886 1991 2.798976 GAGCATCTCTAGCAGACCTG 57.201 55.000 0.00 0.00 32.26 4.00
1887 1992 2.031120 GAGCATCTCTAGCAGACCTGT 58.969 52.381 0.00 0.00 32.26 4.00
1888 1993 2.430332 GAGCATCTCTAGCAGACCTGTT 59.570 50.000 0.00 0.00 32.26 3.16
1889 1994 3.634448 GAGCATCTCTAGCAGACCTGTTA 59.366 47.826 0.00 0.00 32.26 2.41
1890 1995 4.222336 AGCATCTCTAGCAGACCTGTTAT 58.778 43.478 0.00 0.00 32.26 1.89
1891 1996 5.389520 AGCATCTCTAGCAGACCTGTTATA 58.610 41.667 0.00 0.00 32.26 0.98
1892 1997 6.015918 AGCATCTCTAGCAGACCTGTTATAT 58.984 40.000 0.00 0.00 32.26 0.86
1893 1998 6.152661 AGCATCTCTAGCAGACCTGTTATATC 59.847 42.308 0.00 0.00 32.26 1.63
1894 1999 6.071672 GCATCTCTAGCAGACCTGTTATATCA 60.072 42.308 0.00 0.00 32.26 2.15
1895 2000 7.363705 GCATCTCTAGCAGACCTGTTATATCAT 60.364 40.741 0.00 0.00 32.26 2.45
1896 2001 7.459795 TCTCTAGCAGACCTGTTATATCATG 57.540 40.000 0.00 0.00 0.00 3.07
1897 2002 6.435591 TCTCTAGCAGACCTGTTATATCATGG 59.564 42.308 0.00 0.00 0.00 3.66
1898 2003 6.314917 TCTAGCAGACCTGTTATATCATGGA 58.685 40.000 0.00 0.00 0.00 3.41
1899 2004 5.220710 AGCAGACCTGTTATATCATGGAC 57.779 43.478 0.00 0.00 0.00 4.02
1900 2005 4.040952 AGCAGACCTGTTATATCATGGACC 59.959 45.833 0.00 0.00 0.00 4.46
1901 2006 4.804261 GCAGACCTGTTATATCATGGACCC 60.804 50.000 0.00 0.00 0.00 4.46
1902 2007 4.594920 CAGACCTGTTATATCATGGACCCT 59.405 45.833 0.00 0.00 0.00 4.34
1903 2008 5.072329 CAGACCTGTTATATCATGGACCCTT 59.928 44.000 0.00 0.00 0.00 3.95
1904 2009 6.270000 CAGACCTGTTATATCATGGACCCTTA 59.730 42.308 0.00 0.00 0.00 2.69
1905 2010 7.025620 AGACCTGTTATATCATGGACCCTTAT 58.974 38.462 0.00 0.00 0.00 1.73
1906 2011 8.184249 AGACCTGTTATATCATGGACCCTTATA 58.816 37.037 0.00 0.00 0.00 0.98
1907 2012 8.933522 ACCTGTTATATCATGGACCCTTATAT 57.066 34.615 0.00 0.00 0.00 0.86
1908 2013 9.351572 ACCTGTTATATCATGGACCCTTATATT 57.648 33.333 0.00 0.00 0.00 1.28
1909 2014 9.618890 CCTGTTATATCATGGACCCTTATATTG 57.381 37.037 0.00 0.00 0.00 1.90
1910 2015 9.113838 CTGTTATATCATGGACCCTTATATTGC 57.886 37.037 0.00 0.00 0.00 3.56
1911 2016 8.835734 TGTTATATCATGGACCCTTATATTGCT 58.164 33.333 0.00 0.00 0.00 3.91
1912 2017 9.686683 GTTATATCATGGACCCTTATATTGCTT 57.313 33.333 0.00 0.00 0.00 3.91
1916 2021 7.817418 TCATGGACCCTTATATTGCTTTTAC 57.183 36.000 0.00 0.00 0.00 2.01
1917 2022 7.350382 TCATGGACCCTTATATTGCTTTTACA 58.650 34.615 0.00 0.00 0.00 2.41
1918 2023 7.502226 TCATGGACCCTTATATTGCTTTTACAG 59.498 37.037 0.00 0.00 0.00 2.74
1919 2024 6.727394 TGGACCCTTATATTGCTTTTACAGT 58.273 36.000 0.00 0.00 0.00 3.55
1920 2025 7.179269 TGGACCCTTATATTGCTTTTACAGTT 58.821 34.615 0.00 0.00 0.00 3.16
1921 2026 7.338449 TGGACCCTTATATTGCTTTTACAGTTC 59.662 37.037 0.00 0.00 0.00 3.01
1922 2027 7.338449 GGACCCTTATATTGCTTTTACAGTTCA 59.662 37.037 0.00 0.00 0.00 3.18
1923 2028 8.051901 ACCCTTATATTGCTTTTACAGTTCAC 57.948 34.615 0.00 0.00 0.00 3.18
1924 2029 7.668052 ACCCTTATATTGCTTTTACAGTTCACA 59.332 33.333 0.00 0.00 0.00 3.58
1925 2030 8.184192 CCCTTATATTGCTTTTACAGTTCACAG 58.816 37.037 0.00 0.00 0.00 3.66
1926 2031 8.946085 CCTTATATTGCTTTTACAGTTCACAGA 58.054 33.333 0.00 0.00 0.00 3.41
1930 2035 7.755582 ATTGCTTTTACAGTTCACAGAAAAC 57.244 32.000 0.00 0.00 0.00 2.43
1931 2036 5.646606 TGCTTTTACAGTTCACAGAAAACC 58.353 37.500 0.00 0.00 0.00 3.27
1932 2037 5.184096 TGCTTTTACAGTTCACAGAAAACCA 59.816 36.000 0.00 0.00 0.00 3.67
1933 2038 5.743872 GCTTTTACAGTTCACAGAAAACCAG 59.256 40.000 0.00 0.00 0.00 4.00
1934 2039 6.625081 GCTTTTACAGTTCACAGAAAACCAGT 60.625 38.462 0.00 0.00 0.00 4.00
1935 2040 6.827586 TTTACAGTTCACAGAAAACCAGTT 57.172 33.333 0.00 0.00 0.00 3.16
1936 2041 6.827586 TTACAGTTCACAGAAAACCAGTTT 57.172 33.333 0.00 0.00 0.00 2.66
1937 2042 5.722021 ACAGTTCACAGAAAACCAGTTTT 57.278 34.783 8.19 8.19 44.59 2.43
1938 2043 6.827586 ACAGTTCACAGAAAACCAGTTTTA 57.172 33.333 8.42 0.00 42.26 1.52
1939 2044 6.617879 ACAGTTCACAGAAAACCAGTTTTAC 58.382 36.000 8.42 3.01 42.26 2.01
1940 2045 6.433093 ACAGTTCACAGAAAACCAGTTTTACT 59.567 34.615 8.42 5.07 42.26 2.24
1941 2046 6.747280 CAGTTCACAGAAAACCAGTTTTACTG 59.253 38.462 21.08 21.08 45.53 2.74
1950 2055 1.156736 CAGTTTTACTGGCTGGTCCG 58.843 55.000 0.00 0.00 42.35 4.79
1951 2056 2.213200 CAGTTTTACTGGCTGGTCCGG 61.213 57.143 0.00 0.00 42.35 5.14
1952 2057 0.958876 GTTTTACTGGCTGGTCCGGG 60.959 60.000 0.00 0.00 45.92 5.73
1953 2058 2.757980 TTTTACTGGCTGGTCCGGGC 62.758 60.000 17.44 17.44 45.92 6.13
1969 2074 2.746277 GCACCGGCCGAACAGATT 60.746 61.111 30.73 0.00 0.00 2.40
1970 2075 2.750888 GCACCGGCCGAACAGATTC 61.751 63.158 30.73 2.41 0.00 2.52
1971 2076 2.106683 CACCGGCCGAACAGATTCC 61.107 63.158 30.73 0.00 0.00 3.01
1972 2077 2.890474 CCGGCCGAACAGATTCCG 60.890 66.667 30.73 0.44 39.79 4.30
1973 2078 2.125673 CGGCCGAACAGATTCCGT 60.126 61.111 24.07 0.00 35.75 4.69
1974 2079 1.140161 CGGCCGAACAGATTCCGTA 59.860 57.895 24.07 0.00 35.75 4.02
1975 2080 0.249322 CGGCCGAACAGATTCCGTAT 60.249 55.000 24.07 0.00 35.75 3.06
1976 2081 1.001048 CGGCCGAACAGATTCCGTATA 60.001 52.381 24.07 0.00 35.75 1.47
1977 2082 2.544277 CGGCCGAACAGATTCCGTATAA 60.544 50.000 24.07 0.00 35.75 0.98
1978 2083 3.660865 GGCCGAACAGATTCCGTATAAT 58.339 45.455 0.00 0.00 0.00 1.28
1979 2084 3.678548 GGCCGAACAGATTCCGTATAATC 59.321 47.826 0.00 0.00 36.33 1.75
1980 2085 4.304110 GCCGAACAGATTCCGTATAATCA 58.696 43.478 0.00 0.00 38.16 2.57
1981 2086 4.748102 GCCGAACAGATTCCGTATAATCAA 59.252 41.667 0.00 0.00 38.16 2.57
1982 2087 5.408604 GCCGAACAGATTCCGTATAATCAAT 59.591 40.000 0.00 0.00 38.16 2.57
1983 2088 6.401153 GCCGAACAGATTCCGTATAATCAATC 60.401 42.308 0.00 0.00 38.16 2.67
1984 2089 6.868864 CCGAACAGATTCCGTATAATCAATCT 59.131 38.462 0.00 0.00 38.16 2.40
2011 2116 4.839668 AAACCAAATCAAAATCGACCGA 57.160 36.364 0.00 0.00 0.00 4.69
2025 2130 4.470170 CCGACGACCGACATGCGA 62.470 66.667 10.48 0.00 44.57 5.10
2031 2136 1.154093 GACCGACATGCGAACGAGA 60.154 57.895 10.48 0.00 44.57 4.04
2038 2143 1.792949 ACATGCGAACGAGAAAGACAC 59.207 47.619 0.00 0.00 0.00 3.67
2046 2151 0.319555 CGAGAAAGACACGGCCAGAA 60.320 55.000 2.24 0.00 0.00 3.02
2047 2152 1.872237 CGAGAAAGACACGGCCAGAAA 60.872 52.381 2.24 0.00 0.00 2.52
2050 2155 0.179067 AAAGACACGGCCAGAAACGA 60.179 50.000 2.24 0.00 0.00 3.85
2058 2163 3.431725 CCAGAAACGAAGGCCGGC 61.432 66.667 21.18 21.18 43.93 6.13
2062 2167 4.404098 AAACGAAGGCCGGCGGAT 62.404 61.111 33.44 15.09 43.93 4.18
2085 2191 4.117661 GACGAGAAGACGCGGGCT 62.118 66.667 12.47 4.12 43.08 5.19
2108 2214 4.124351 CGACACGCGGGCTTAGGA 62.124 66.667 9.12 0.00 36.03 2.94
2110 2216 3.291101 GACACGCGGGCTTAGGACA 62.291 63.158 9.12 0.00 0.00 4.02
2114 2220 4.858680 GCGGGCTTAGGACAGGGC 62.859 72.222 0.00 0.00 0.00 5.19
2169 2275 4.005032 GCTAGCTAGCTCGCACAC 57.995 61.111 33.71 6.73 45.62 3.82
2170 2276 1.139734 GCTAGCTAGCTCGCACACA 59.860 57.895 33.71 8.51 45.62 3.72
2171 2277 0.249238 GCTAGCTAGCTCGCACACAT 60.249 55.000 33.71 4.56 45.62 3.21
2172 2278 1.764851 CTAGCTAGCTCGCACACATC 58.235 55.000 23.26 0.00 0.00 3.06
2173 2279 0.029433 TAGCTAGCTCGCACACATCG 59.971 55.000 23.26 0.00 0.00 3.84
2174 2280 1.226688 GCTAGCTCGCACACATCGA 60.227 57.895 7.70 0.00 34.52 3.59
2175 2281 0.596083 GCTAGCTCGCACACATCGAT 60.596 55.000 7.70 0.00 35.25 3.59
2176 2282 1.845266 CTAGCTCGCACACATCGATT 58.155 50.000 0.00 0.00 35.25 3.34
2177 2283 1.783711 CTAGCTCGCACACATCGATTC 59.216 52.381 0.00 0.00 35.25 2.52
2178 2284 0.108662 AGCTCGCACACATCGATTCA 60.109 50.000 0.00 0.00 35.25 2.57
2179 2285 0.025513 GCTCGCACACATCGATTCAC 59.974 55.000 0.00 0.00 35.25 3.18
2180 2286 1.349234 CTCGCACACATCGATTCACA 58.651 50.000 0.00 0.00 35.25 3.58
2181 2287 1.322637 CTCGCACACATCGATTCACAG 59.677 52.381 0.00 0.00 35.25 3.66
2221 2327 4.145052 GCTAGCTAGCTCGCATCG 57.855 61.111 33.71 11.67 45.62 3.84
2224 2330 1.402194 GCTAGCTAGCTCGCATCGATT 60.402 52.381 33.71 3.83 45.62 3.34
2225 2331 2.514902 CTAGCTAGCTCGCATCGATTC 58.485 52.381 23.26 0.00 34.61 2.52
2238 2354 2.279784 GATTCAGCTAGCGCGGCT 60.280 61.111 21.56 21.56 43.41 5.52
2265 2381 2.906182 TAGCTTGCTCGCATCCACGG 62.906 60.000 0.00 0.00 0.00 4.94
2267 2383 3.958147 CTTGCTCGCATCCACGGGT 62.958 63.158 0.00 0.00 35.43 5.28
2311 2480 1.303317 GCCGGGTGAGTTTCATGGT 60.303 57.895 2.18 0.00 0.00 3.55
2341 2510 0.391661 GCAGAGATTCCTCAACCGCA 60.392 55.000 0.00 0.00 41.87 5.69
2343 2512 2.005451 CAGAGATTCCTCAACCGCAAG 58.995 52.381 0.00 0.00 41.87 4.01
2344 2513 1.625818 AGAGATTCCTCAACCGCAAGT 59.374 47.619 0.00 0.00 41.87 3.16
2357 2526 1.153353 CGCAAGTGTTGACCGGTATT 58.847 50.000 7.34 0.00 0.00 1.89
2358 2527 1.533731 CGCAAGTGTTGACCGGTATTT 59.466 47.619 7.34 0.00 0.00 1.40
2368 2537 1.228154 CCGGTATTTAGGGCCCTGC 60.228 63.158 35.81 17.69 0.00 4.85
2379 2548 2.919328 GCCCTGCCAAAGTTGCCT 60.919 61.111 0.00 0.00 0.00 4.75
2386 2555 2.609002 CTGCCAAAGTTGCCTTCAAAAC 59.391 45.455 0.00 0.00 33.37 2.43
2387 2556 2.235898 TGCCAAAGTTGCCTTCAAAACT 59.764 40.909 0.00 0.00 38.25 2.66
2388 2557 3.449018 TGCCAAAGTTGCCTTCAAAACTA 59.551 39.130 0.00 0.00 35.60 2.24
2389 2558 4.081420 TGCCAAAGTTGCCTTCAAAACTAA 60.081 37.500 0.00 0.00 35.60 2.24
2408 2578 4.720273 ACTAAAGATATGAGGGTTTCGGGT 59.280 41.667 0.00 0.00 0.00 5.28
2412 2582 1.269012 TATGAGGGTTTCGGGTTCGT 58.731 50.000 0.00 0.00 37.69 3.85
2425 2595 1.211212 GGGTTCGTGTTTATAGGGCCT 59.789 52.381 12.58 12.58 0.00 5.19
2432 2602 6.052405 TCGTGTTTATAGGGCCTCTTAAAA 57.948 37.500 10.74 3.74 0.00 1.52
2433 2603 6.474630 TCGTGTTTATAGGGCCTCTTAAAAA 58.525 36.000 10.74 8.49 0.00 1.94
2469 2639 4.830600 GGACAATTTTAAGGGGTCTGTTCA 59.169 41.667 0.00 0.00 0.00 3.18
2471 2641 5.701224 ACAATTTTAAGGGGTCTGTTCAGA 58.299 37.500 0.00 0.00 0.00 3.27
2501 2672 2.929960 TCGACTAGAACTGTCAAAGCG 58.070 47.619 0.00 0.00 34.37 4.68
2510 2681 6.870971 AGAACTGTCAAAGCGGTTATTTTA 57.129 33.333 0.00 0.00 38.01 1.52
2512 2683 5.025986 ACTGTCAAAGCGGTTATTTTACG 57.974 39.130 0.00 0.00 0.00 3.18
2523 2694 4.156373 CGGTTATTTTACGGGTTTGACCAT 59.844 41.667 0.00 0.00 41.02 3.55
2533 2704 3.682155 CGGGTTTGACCATTTATACGGGA 60.682 47.826 0.00 0.00 41.02 5.14
2551 2722 2.899256 GGGATCTGCTAGAGATGCTCTT 59.101 50.000 16.99 0.00 46.30 2.85
2552 2723 4.085733 GGGATCTGCTAGAGATGCTCTTA 58.914 47.826 16.99 0.00 46.30 2.10
2553 2724 4.526262 GGGATCTGCTAGAGATGCTCTTAA 59.474 45.833 16.99 0.00 46.30 1.85
2554 2725 5.187576 GGGATCTGCTAGAGATGCTCTTAAT 59.812 44.000 16.99 0.00 46.30 1.40
2555 2726 6.332630 GGATCTGCTAGAGATGCTCTTAATC 58.667 44.000 12.96 0.66 44.26 1.75
2556 2727 5.369685 TCTGCTAGAGATGCTCTTAATCG 57.630 43.478 1.88 0.00 41.50 3.34
2557 2728 3.906998 TGCTAGAGATGCTCTTAATCGC 58.093 45.455 1.88 0.31 41.50 4.58
2558 2729 3.571828 TGCTAGAGATGCTCTTAATCGCT 59.428 43.478 1.88 0.00 41.50 4.93
2559 2730 4.762251 TGCTAGAGATGCTCTTAATCGCTA 59.238 41.667 1.88 0.00 41.50 4.26
2563 2734 6.398234 AGAGATGCTCTTAATCGCTAGAAA 57.602 37.500 0.00 0.00 37.60 2.52
2564 2735 6.212955 AGAGATGCTCTTAATCGCTAGAAAC 58.787 40.000 0.00 0.00 37.60 2.78
2565 2736 5.293560 AGATGCTCTTAATCGCTAGAAACC 58.706 41.667 0.00 0.00 0.00 3.27
2566 2737 4.465632 TGCTCTTAATCGCTAGAAACCA 57.534 40.909 0.00 0.00 0.00 3.67
2567 2738 5.023533 TGCTCTTAATCGCTAGAAACCAT 57.976 39.130 0.00 0.00 0.00 3.55
2568 2739 6.156748 TGCTCTTAATCGCTAGAAACCATA 57.843 37.500 0.00 0.00 0.00 2.74
2569 2740 6.216569 TGCTCTTAATCGCTAGAAACCATAG 58.783 40.000 0.00 0.00 0.00 2.23
2570 2741 6.183360 TGCTCTTAATCGCTAGAAACCATAGT 60.183 38.462 0.00 0.00 0.00 2.12
2571 2742 6.702282 GCTCTTAATCGCTAGAAACCATAGTT 59.298 38.462 0.00 0.00 38.03 2.24
2573 2744 9.099454 CTCTTAATCGCTAGAAACCATAGTTTT 57.901 33.333 0.00 0.00 46.25 2.43
2574 2745 9.444600 TCTTAATCGCTAGAAACCATAGTTTTT 57.555 29.630 0.00 0.00 46.25 1.94
2599 2770 1.076727 AAAAAGAGGAAGGCCCCCG 59.923 57.895 0.00 0.00 34.66 5.73
2600 2771 2.441035 AAAAAGAGGAAGGCCCCCGG 62.441 60.000 0.00 0.00 34.66 5.73
2612 2783 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
2613 2784 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
2614 2785 3.473647 CCGGCCTCTGCATCTGGA 61.474 66.667 0.00 0.00 40.13 3.86
2615 2786 2.202987 CGGCCTCTGCATCTGGAC 60.203 66.667 0.00 0.35 40.13 4.02
2616 2787 2.202987 GGCCTCTGCATCTGGACG 60.203 66.667 0.00 0.00 40.13 4.79
2617 2788 2.725312 GGCCTCTGCATCTGGACGA 61.725 63.158 0.00 0.00 40.13 4.20
2618 2789 1.445095 GCCTCTGCATCTGGACGAT 59.555 57.895 0.00 0.00 37.47 3.73
2625 2796 2.697819 CATCTGGACGATGCATGCA 58.302 52.632 25.04 25.04 42.75 3.96
2626 2797 0.586802 CATCTGGACGATGCATGCAG 59.413 55.000 26.69 15.79 42.75 4.41
2627 2798 1.164662 ATCTGGACGATGCATGCAGC 61.165 55.000 25.69 25.69 45.96 5.25
2628 2799 2.825387 TGGACGATGCATGCAGCC 60.825 61.111 28.76 23.21 44.83 4.85
2629 2800 2.825387 GGACGATGCATGCAGCCA 60.825 61.111 28.76 3.84 44.83 4.75
2630 2801 2.406401 GACGATGCATGCAGCCAC 59.594 61.111 28.76 18.86 44.83 5.01
2631 2802 2.045634 ACGATGCATGCAGCCACT 60.046 55.556 28.76 10.64 44.83 4.00
2632 2803 1.651240 GACGATGCATGCAGCCACTT 61.651 55.000 28.76 9.83 44.83 3.16
2633 2804 1.246056 ACGATGCATGCAGCCACTTT 61.246 50.000 28.76 9.02 44.83 2.66
2634 2805 0.734309 CGATGCATGCAGCCACTTTA 59.266 50.000 28.76 0.09 44.83 1.85
2635 2806 1.335810 CGATGCATGCAGCCACTTTAT 59.664 47.619 28.76 7.39 44.83 1.40
2636 2807 2.223641 CGATGCATGCAGCCACTTTATT 60.224 45.455 28.76 6.59 44.83 1.40
2637 2808 3.003585 CGATGCATGCAGCCACTTTATTA 59.996 43.478 28.76 0.00 44.83 0.98
2638 2809 4.497842 CGATGCATGCAGCCACTTTATTAA 60.498 41.667 28.76 0.00 44.83 1.40
2639 2810 5.535333 GATGCATGCAGCCACTTTATTAAT 58.465 37.500 25.21 2.11 44.83 1.40
2640 2811 5.341872 TGCATGCAGCCACTTTATTAATT 57.658 34.783 18.46 0.00 44.83 1.40
2641 2812 6.462552 TGCATGCAGCCACTTTATTAATTA 57.537 33.333 18.46 0.00 44.83 1.40
2642 2813 7.053316 TGCATGCAGCCACTTTATTAATTAT 57.947 32.000 18.46 0.00 44.83 1.28
2643 2814 7.499292 TGCATGCAGCCACTTTATTAATTATT 58.501 30.769 18.46 0.00 44.83 1.40
2644 2815 7.652909 TGCATGCAGCCACTTTATTAATTATTC 59.347 33.333 18.46 0.00 44.83 1.75
2645 2816 7.652909 GCATGCAGCCACTTTATTAATTATTCA 59.347 33.333 14.21 0.00 37.23 2.57
2646 2817 9.701098 CATGCAGCCACTTTATTAATTATTCAT 57.299 29.630 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.291178 CAGCAAGTCAAAATCCACATCAAA 58.709 37.500 0.00 0.00 0.00 2.69
3 4 3.367703 CCCAGCAAGTCAAAATCCACATC 60.368 47.826 0.00 0.00 0.00 3.06
4 5 2.564062 CCCAGCAAGTCAAAATCCACAT 59.436 45.455 0.00 0.00 0.00 3.21
5 6 1.962807 CCCAGCAAGTCAAAATCCACA 59.037 47.619 0.00 0.00 0.00 4.17
6 7 1.273327 CCCCAGCAAGTCAAAATCCAC 59.727 52.381 0.00 0.00 0.00 4.02
7 8 1.146774 TCCCCAGCAAGTCAAAATCCA 59.853 47.619 0.00 0.00 0.00 3.41
8 9 1.923356 TCCCCAGCAAGTCAAAATCC 58.077 50.000 0.00 0.00 0.00 3.01
9 10 4.541973 AAATCCCCAGCAAGTCAAAATC 57.458 40.909 0.00 0.00 0.00 2.17
10 11 6.352137 GGATTAAATCCCCAGCAAGTCAAAAT 60.352 38.462 0.00 0.00 43.88 1.82
11 12 5.046663 GGATTAAATCCCCAGCAAGTCAAAA 60.047 40.000 0.00 0.00 43.88 2.44
12 13 4.466015 GGATTAAATCCCCAGCAAGTCAAA 59.534 41.667 0.00 0.00 43.88 2.69
13 14 4.023291 GGATTAAATCCCCAGCAAGTCAA 58.977 43.478 0.00 0.00 43.88 3.18
14 15 3.631250 GGATTAAATCCCCAGCAAGTCA 58.369 45.455 0.00 0.00 43.88 3.41
25 26 4.141642 AGCAAATTGGCAGGGATTAAATCC 60.142 41.667 7.75 0.00 41.85 3.01
26 27 5.027293 AGCAAATTGGCAGGGATTAAATC 57.973 39.130 7.75 0.00 35.83 2.17
27 28 4.141642 GGAGCAAATTGGCAGGGATTAAAT 60.142 41.667 7.75 0.00 35.83 1.40
28 29 3.197549 GGAGCAAATTGGCAGGGATTAAA 59.802 43.478 7.75 0.00 35.83 1.52
29 30 2.765699 GGAGCAAATTGGCAGGGATTAA 59.234 45.455 7.75 0.00 35.83 1.40
30 31 2.292126 TGGAGCAAATTGGCAGGGATTA 60.292 45.455 7.75 0.00 35.83 1.75
31 32 1.197812 GGAGCAAATTGGCAGGGATT 58.802 50.000 7.75 0.00 35.83 3.01
32 33 0.041535 TGGAGCAAATTGGCAGGGAT 59.958 50.000 7.75 0.00 35.83 3.85
33 34 0.178938 TTGGAGCAAATTGGCAGGGA 60.179 50.000 7.75 0.00 35.83 4.20
34 35 0.686224 TTTGGAGCAAATTGGCAGGG 59.314 50.000 7.75 0.00 35.83 4.45
35 36 1.608801 GGTTTGGAGCAAATTGGCAGG 60.609 52.381 7.75 0.00 35.74 4.85
36 37 1.608801 GGGTTTGGAGCAAATTGGCAG 60.609 52.381 7.75 0.00 35.74 4.85
37 38 0.396060 GGGTTTGGAGCAAATTGGCA 59.604 50.000 7.75 0.00 35.74 4.92
38 39 0.321564 GGGGTTTGGAGCAAATTGGC 60.322 55.000 0.00 0.00 35.74 4.52
39 40 1.351076 AGGGGTTTGGAGCAAATTGG 58.649 50.000 0.00 0.00 35.74 3.16
40 41 2.769893 CAAGGGGTTTGGAGCAAATTG 58.230 47.619 0.00 0.00 35.74 2.32
50 51 0.105709 ACAGGGTTCCAAGGGGTTTG 60.106 55.000 0.00 0.00 36.50 2.93
51 52 0.105709 CACAGGGTTCCAAGGGGTTT 60.106 55.000 0.00 0.00 34.93 3.27
52 53 1.541672 CACAGGGTTCCAAGGGGTT 59.458 57.895 0.00 0.00 34.93 4.11
53 54 2.469765 CCACAGGGTTCCAAGGGGT 61.470 63.158 0.00 0.00 34.93 4.95
54 55 1.725169 TTCCACAGGGTTCCAAGGGG 61.725 60.000 0.00 0.00 34.93 4.79
55 56 0.539669 GTTCCACAGGGTTCCAAGGG 60.540 60.000 0.00 0.00 34.93 3.95
56 57 0.539669 GGTTCCACAGGGTTCCAAGG 60.540 60.000 0.00 0.00 34.93 3.61
57 58 0.889186 CGGTTCCACAGGGTTCCAAG 60.889 60.000 0.00 0.00 34.93 3.61
58 59 1.149627 CGGTTCCACAGGGTTCCAA 59.850 57.895 0.00 0.00 34.93 3.53
59 60 1.346479 TTCGGTTCCACAGGGTTCCA 61.346 55.000 0.00 0.00 34.93 3.53
60 61 0.887836 GTTCGGTTCCACAGGGTTCC 60.888 60.000 0.00 0.00 34.93 3.62
61 62 0.179040 TGTTCGGTTCCACAGGGTTC 60.179 55.000 0.00 0.00 34.93 3.62
62 63 0.256464 TTGTTCGGTTCCACAGGGTT 59.744 50.000 0.00 0.00 34.93 4.11
63 64 0.179029 CTTGTTCGGTTCCACAGGGT 60.179 55.000 0.00 0.00 34.93 4.34
64 65 0.889186 CCTTGTTCGGTTCCACAGGG 60.889 60.000 0.00 0.00 34.17 4.45
65 66 1.515521 GCCTTGTTCGGTTCCACAGG 61.516 60.000 0.00 0.00 0.00 4.00
66 67 1.515521 GGCCTTGTTCGGTTCCACAG 61.516 60.000 0.00 0.00 0.00 3.66
67 68 1.527380 GGCCTTGTTCGGTTCCACA 60.527 57.895 0.00 0.00 0.00 4.17
68 69 0.822121 AAGGCCTTGTTCGGTTCCAC 60.822 55.000 19.73 0.00 0.00 4.02
69 70 0.766131 TAAGGCCTTGTTCGGTTCCA 59.234 50.000 28.77 0.00 0.00 3.53
70 71 1.450025 CTAAGGCCTTGTTCGGTTCC 58.550 55.000 28.77 0.00 0.00 3.62
71 72 1.450025 CCTAAGGCCTTGTTCGGTTC 58.550 55.000 28.77 0.00 0.00 3.62
72 73 0.037734 CCCTAAGGCCTTGTTCGGTT 59.962 55.000 28.77 0.57 0.00 4.44
73 74 1.131928 ACCCTAAGGCCTTGTTCGGT 61.132 55.000 28.77 21.97 36.11 4.69
74 75 0.676782 CACCCTAAGGCCTTGTTCGG 60.677 60.000 28.77 21.35 36.11 4.30
75 76 1.305930 GCACCCTAAGGCCTTGTTCG 61.306 60.000 28.77 14.32 36.11 3.95
76 77 1.305930 CGCACCCTAAGGCCTTGTTC 61.306 60.000 28.77 10.94 36.11 3.18
77 78 1.303317 CGCACCCTAAGGCCTTGTT 60.303 57.895 28.77 4.09 36.11 2.83
78 79 2.185310 CTCGCACCCTAAGGCCTTGT 62.185 60.000 28.77 14.77 36.11 3.16
79 80 1.450312 CTCGCACCCTAAGGCCTTG 60.450 63.158 28.77 16.94 36.11 3.61
80 81 1.612442 TCTCGCACCCTAAGGCCTT 60.612 57.895 24.18 24.18 36.11 4.35
81 82 2.038975 TCTCGCACCCTAAGGCCT 59.961 61.111 0.00 0.00 36.11 5.19
82 83 1.614241 TTCTCTCGCACCCTAAGGCC 61.614 60.000 0.00 0.00 36.11 5.19
83 84 0.466124 ATTCTCTCGCACCCTAAGGC 59.534 55.000 0.00 0.00 36.11 4.35
84 85 2.168521 TCAATTCTCTCGCACCCTAAGG 59.831 50.000 0.00 0.00 40.04 2.69
89 90 0.250513 AGGTCAATTCTCTCGCACCC 59.749 55.000 0.00 0.00 0.00 4.61
101 102 3.294214 GGCCTTGAATCATCAGGTCAAT 58.706 45.455 0.00 0.00 36.78 2.57
111 112 3.462954 TGATCTATTGGGGCCTTGAATCA 59.537 43.478 0.84 3.26 0.00 2.57
214 215 8.561738 AGCTAGTTTGCTTATGCTAAGTTAAA 57.438 30.769 9.67 0.00 40.93 1.52
229 230 1.470494 GCTTTCCCTGAGCTAGTTTGC 59.530 52.381 0.00 0.00 37.18 3.68
230 231 2.783135 TGCTTTCCCTGAGCTAGTTTG 58.217 47.619 0.00 0.00 40.75 2.93
261 263 3.055458 TGTGAATGAATGCTCCTCCGTTA 60.055 43.478 0.00 0.00 0.00 3.18
329 331 1.755783 GAATGCCCTGGCTCCCTTG 60.756 63.158 9.97 0.00 42.51 3.61
337 339 1.078708 ACGTAACGGAATGCCCTGG 60.079 57.895 0.00 0.00 0.00 4.45
341 349 2.398036 CGCACGTAACGGAATGCC 59.602 61.111 2.40 0.00 34.49 4.40
354 362 7.627585 TCTATCGTTTATTTATACACCGCAC 57.372 36.000 0.00 0.00 0.00 5.34
383 391 5.221342 CCAAATGCCCTTTGTTGTACTGTAA 60.221 40.000 7.75 0.00 42.29 2.41
488 496 3.497332 TCGGAGAGAGAGAGGAAAAACA 58.503 45.455 0.00 0.00 0.00 2.83
489 497 4.729227 ATCGGAGAGAGAGAGGAAAAAC 57.271 45.455 0.00 0.00 43.63 2.43
490 498 5.246203 TCAAATCGGAGAGAGAGAGGAAAAA 59.754 40.000 0.00 0.00 43.63 1.94
491 499 4.772624 TCAAATCGGAGAGAGAGAGGAAAA 59.227 41.667 0.00 0.00 43.63 2.29
503 511 2.452813 GCGCGCTTCAAATCGGAGA 61.453 57.895 26.67 0.00 45.75 3.71
568 627 3.866651 TCAGAATGAAACAGAGGCTAGC 58.133 45.455 6.04 6.04 45.97 3.42
599 664 3.648009 AGCTTAGATGCTTCTACGATGC 58.352 45.455 14.93 13.06 40.93 3.91
628 693 9.050601 GGAGTTTGATGGTTTATAATCTCAGAG 57.949 37.037 0.00 0.00 0.00 3.35
756 823 2.277373 CTAGCGGACACGAGCGTC 60.277 66.667 0.00 0.00 44.60 5.19
811 878 3.644606 AGGCCAGTGGACCAGCAG 61.645 66.667 12.85 0.00 0.00 4.24
863 930 0.038251 TGTCACTGTGTCGAGATGGC 60.038 55.000 7.79 0.00 0.00 4.40
876 943 2.372040 TAGCGGTTTGGCGTGTCACT 62.372 55.000 0.65 0.00 38.18 3.41
967 1034 0.037046 GCGAGAACGGGTAAAGGGAA 60.037 55.000 0.00 0.00 40.15 3.97
974 1041 2.360350 ACGAGGCGAGAACGGGTA 60.360 61.111 0.00 0.00 40.15 3.69
975 1042 3.745803 GACGAGGCGAGAACGGGT 61.746 66.667 0.00 0.00 40.15 5.28
1084 1154 4.664677 ACTCACGGTGCGGCTGTC 62.665 66.667 2.51 0.00 33.66 3.51
1139 1212 7.361371 CGGTTGATAGATAGATAGAGTGACACC 60.361 44.444 0.84 0.00 0.00 4.16
1156 1229 1.402259 AGAGCAGTCGTCGGTTGATAG 59.598 52.381 0.00 0.00 0.00 2.08
1165 1246 1.805134 GCAGAGCAGAGCAGTCGTC 60.805 63.158 0.00 0.00 0.00 4.20
1192 1273 4.722855 AGCAAAACGGCGCCATGC 62.723 61.111 28.98 27.59 45.38 4.06
1725 1830 1.929836 GCACAGTCTGCTTATTCTCGG 59.070 52.381 0.00 0.00 43.33 4.63
1867 1972 2.031120 ACAGGTCTGCTAGAGATGCTC 58.969 52.381 0.00 0.00 31.63 4.26
1868 1973 2.157640 ACAGGTCTGCTAGAGATGCT 57.842 50.000 0.00 0.00 31.63 3.79
1869 1974 2.977772 AACAGGTCTGCTAGAGATGC 57.022 50.000 0.00 0.00 31.63 3.91
1870 1975 7.459795 TGATATAACAGGTCTGCTAGAGATG 57.540 40.000 0.00 0.00 31.63 2.90
1871 1976 7.123997 CCATGATATAACAGGTCTGCTAGAGAT 59.876 40.741 0.00 0.00 31.63 2.75
1872 1977 6.435591 CCATGATATAACAGGTCTGCTAGAGA 59.564 42.308 0.00 0.00 0.00 3.10
1873 1978 6.435591 TCCATGATATAACAGGTCTGCTAGAG 59.564 42.308 0.00 0.00 0.00 2.43
1874 1979 6.209589 GTCCATGATATAACAGGTCTGCTAGA 59.790 42.308 0.00 0.00 0.00 2.43
1875 1980 6.393990 GTCCATGATATAACAGGTCTGCTAG 58.606 44.000 0.00 0.00 0.00 3.42
1876 1981 5.246203 GGTCCATGATATAACAGGTCTGCTA 59.754 44.000 0.00 0.00 0.00 3.49
1877 1982 4.040952 GGTCCATGATATAACAGGTCTGCT 59.959 45.833 0.00 0.00 0.00 4.24
1878 1983 4.319177 GGTCCATGATATAACAGGTCTGC 58.681 47.826 0.00 0.00 0.00 4.26
1879 1984 4.594920 AGGGTCCATGATATAACAGGTCTG 59.405 45.833 0.00 0.00 0.00 3.51
1880 1985 4.832492 AGGGTCCATGATATAACAGGTCT 58.168 43.478 0.00 0.00 0.00 3.85
1881 1986 5.568620 AAGGGTCCATGATATAACAGGTC 57.431 43.478 0.00 0.00 0.00 3.85
1882 1987 8.933522 ATATAAGGGTCCATGATATAACAGGT 57.066 34.615 0.00 0.00 0.00 4.00
1883 1988 9.618890 CAATATAAGGGTCCATGATATAACAGG 57.381 37.037 0.00 0.00 0.00 4.00
1884 1989 9.113838 GCAATATAAGGGTCCATGATATAACAG 57.886 37.037 0.00 0.00 0.00 3.16
1885 1990 8.835734 AGCAATATAAGGGTCCATGATATAACA 58.164 33.333 0.00 0.00 0.00 2.41
1886 1991 9.686683 AAGCAATATAAGGGTCCATGATATAAC 57.313 33.333 0.00 0.00 0.00 1.89
1890 1995 9.515226 GTAAAAGCAATATAAGGGTCCATGATA 57.485 33.333 0.00 0.00 0.00 2.15
1891 1996 8.004215 TGTAAAAGCAATATAAGGGTCCATGAT 58.996 33.333 0.00 0.00 0.00 2.45
1892 1997 7.350382 TGTAAAAGCAATATAAGGGTCCATGA 58.650 34.615 0.00 0.00 0.00 3.07
1893 1998 7.285401 ACTGTAAAAGCAATATAAGGGTCCATG 59.715 37.037 0.00 0.00 0.00 3.66
1894 1999 7.354312 ACTGTAAAAGCAATATAAGGGTCCAT 58.646 34.615 0.00 0.00 0.00 3.41
1895 2000 6.727394 ACTGTAAAAGCAATATAAGGGTCCA 58.273 36.000 0.00 0.00 0.00 4.02
1896 2001 7.338449 TGAACTGTAAAAGCAATATAAGGGTCC 59.662 37.037 0.00 0.00 0.00 4.46
1897 2002 8.182227 GTGAACTGTAAAAGCAATATAAGGGTC 58.818 37.037 0.00 0.00 0.00 4.46
1898 2003 7.668052 TGTGAACTGTAAAAGCAATATAAGGGT 59.332 33.333 0.00 0.00 0.00 4.34
1899 2004 8.050778 TGTGAACTGTAAAAGCAATATAAGGG 57.949 34.615 0.00 0.00 0.00 3.95
1900 2005 8.946085 TCTGTGAACTGTAAAAGCAATATAAGG 58.054 33.333 0.00 0.00 0.00 2.69
1904 2009 9.463443 GTTTTCTGTGAACTGTAAAAGCAATAT 57.537 29.630 0.00 0.00 0.00 1.28
1905 2010 7.918562 GGTTTTCTGTGAACTGTAAAAGCAATA 59.081 33.333 7.94 0.00 37.44 1.90
1906 2011 6.756542 GGTTTTCTGTGAACTGTAAAAGCAAT 59.243 34.615 7.94 0.00 37.44 3.56
1907 2012 6.096695 GGTTTTCTGTGAACTGTAAAAGCAA 58.903 36.000 7.94 0.00 37.44 3.91
1908 2013 5.184096 TGGTTTTCTGTGAACTGTAAAAGCA 59.816 36.000 10.36 10.36 42.11 3.91
1909 2014 5.646606 TGGTTTTCTGTGAACTGTAAAAGC 58.353 37.500 0.00 0.00 37.79 3.51
1910 2015 6.852664 ACTGGTTTTCTGTGAACTGTAAAAG 58.147 36.000 0.00 0.00 0.00 2.27
1911 2016 6.827586 ACTGGTTTTCTGTGAACTGTAAAA 57.172 33.333 0.00 0.00 0.00 1.52
1912 2017 6.827586 AACTGGTTTTCTGTGAACTGTAAA 57.172 33.333 0.00 0.00 0.00 2.01
1913 2018 6.827586 AAACTGGTTTTCTGTGAACTGTAA 57.172 33.333 0.00 0.00 0.00 2.41
1914 2019 6.827586 AAAACTGGTTTTCTGTGAACTGTA 57.172 33.333 5.72 0.00 38.27 2.74
1915 2020 5.722021 AAAACTGGTTTTCTGTGAACTGT 57.278 34.783 5.72 0.00 38.27 3.55
1916 2021 6.747280 CAGTAAAACTGGTTTTCTGTGAACTG 59.253 38.462 14.44 15.09 42.35 3.16
1917 2022 6.852664 CAGTAAAACTGGTTTTCTGTGAACT 58.147 36.000 14.44 8.70 42.35 3.01
1931 2036 1.156736 CGGACCAGCCAGTAAAACTG 58.843 55.000 0.00 0.00 45.53 3.16
1932 2037 0.036306 CCGGACCAGCCAGTAAAACT 59.964 55.000 0.00 0.00 35.94 2.66
1933 2038 0.958876 CCCGGACCAGCCAGTAAAAC 60.959 60.000 0.73 0.00 35.94 2.43
1934 2039 1.377229 CCCGGACCAGCCAGTAAAA 59.623 57.895 0.73 0.00 35.94 1.52
1935 2040 3.074281 CCCGGACCAGCCAGTAAA 58.926 61.111 0.73 0.00 35.94 2.01
1936 2041 3.712907 GCCCGGACCAGCCAGTAA 61.713 66.667 0.73 0.00 35.94 2.24
1952 2057 2.746277 AATCTGTTCGGCCGGTGC 60.746 61.111 27.83 16.03 0.00 5.01
1953 2058 2.106683 GGAATCTGTTCGGCCGGTG 61.107 63.158 27.83 13.00 35.10 4.94
1954 2059 2.267961 GGAATCTGTTCGGCCGGT 59.732 61.111 27.83 1.50 35.10 5.28
1955 2060 2.287457 TACGGAATCTGTTCGGCCGG 62.287 60.000 27.83 9.38 45.80 6.13
1956 2061 0.249322 ATACGGAATCTGTTCGGCCG 60.249 55.000 22.12 22.12 46.83 6.13
1957 2062 2.806608 TATACGGAATCTGTTCGGCC 57.193 50.000 0.00 0.00 37.99 6.13
1958 2063 4.304110 TGATTATACGGAATCTGTTCGGC 58.696 43.478 0.00 0.00 37.99 5.54
1959 2064 6.868864 AGATTGATTATACGGAATCTGTTCGG 59.131 38.462 0.00 0.00 39.70 4.30
1960 2065 7.724205 CAGATTGATTATACGGAATCTGTTCG 58.276 38.462 0.00 0.00 43.43 3.95
1988 2093 5.460748 GTCGGTCGATTTTGATTTGGTTTTT 59.539 36.000 0.00 0.00 0.00 1.94
1989 2094 4.979815 GTCGGTCGATTTTGATTTGGTTTT 59.020 37.500 0.00 0.00 0.00 2.43
1990 2095 4.542735 GTCGGTCGATTTTGATTTGGTTT 58.457 39.130 0.00 0.00 0.00 3.27
1991 2096 3.364565 CGTCGGTCGATTTTGATTTGGTT 60.365 43.478 0.00 0.00 42.86 3.67
1992 2097 2.158841 CGTCGGTCGATTTTGATTTGGT 59.841 45.455 0.00 0.00 42.86 3.67
1993 2098 2.413796 TCGTCGGTCGATTTTGATTTGG 59.586 45.455 0.00 0.00 44.01 3.28
1994 2099 3.715618 TCGTCGGTCGATTTTGATTTG 57.284 42.857 0.00 0.00 44.01 2.32
2004 2109 2.743538 ATGTCGGTCGTCGGTCGA 60.744 61.111 6.72 6.72 46.83 4.20
2005 2110 2.576053 CATGTCGGTCGTCGGTCG 60.576 66.667 0.00 0.00 39.77 4.79
2006 2111 2.879462 GCATGTCGGTCGTCGGTC 60.879 66.667 0.00 0.00 39.77 4.79
2011 2116 2.803670 CGTTCGCATGTCGGTCGT 60.804 61.111 9.16 0.00 39.05 4.34
2020 2125 1.060713 CGTGTCTTTCTCGTTCGCAT 58.939 50.000 0.00 0.00 0.00 4.73
2025 2130 0.600255 CTGGCCGTGTCTTTCTCGTT 60.600 55.000 0.00 0.00 0.00 3.85
2031 2136 0.179067 TCGTTTCTGGCCGTGTCTTT 60.179 50.000 0.00 0.00 0.00 2.52
2058 2163 0.450583 TCTTCTCGTCCGTTCATCCG 59.549 55.000 0.00 0.00 0.00 4.18
2062 2167 1.081641 GCGTCTTCTCGTCCGTTCA 60.082 57.895 0.00 0.00 0.00 3.18
2091 2197 4.124351 TCCTAAGCCCGCGTGTCG 62.124 66.667 4.92 0.00 38.08 4.35
2097 2203 4.858680 GCCCTGTCCTAAGCCCGC 62.859 72.222 0.00 0.00 0.00 6.13
2139 2245 4.577246 CTAGCTGAGTCCGGCCGC 62.577 72.222 22.85 7.25 45.76 6.53
2154 2260 0.029433 CGATGTGTGCGAGCTAGCTA 59.971 55.000 19.38 0.00 38.13 3.32
2161 2267 1.322637 CTGTGAATCGATGTGTGCGAG 59.677 52.381 0.00 0.00 41.49 5.03
2162 2268 1.349234 CTGTGAATCGATGTGTGCGA 58.651 50.000 0.00 0.00 42.48 5.10
2163 2269 0.247419 GCTGTGAATCGATGTGTGCG 60.247 55.000 0.00 0.00 0.00 5.34
2164 2270 1.081892 AGCTGTGAATCGATGTGTGC 58.918 50.000 0.00 0.50 0.00 4.57
2165 2271 2.283617 GCTAGCTGTGAATCGATGTGTG 59.716 50.000 7.70 0.00 0.00 3.82
2166 2272 2.167281 AGCTAGCTGTGAATCGATGTGT 59.833 45.455 18.57 0.00 0.00 3.72
2167 2273 2.819115 AGCTAGCTGTGAATCGATGTG 58.181 47.619 18.57 0.00 0.00 3.21
2168 2274 3.551863 GCTAGCTAGCTGTGAATCGATGT 60.552 47.826 33.71 0.00 45.62 3.06
2169 2275 2.985809 GCTAGCTAGCTGTGAATCGATG 59.014 50.000 33.71 0.56 45.62 3.84
2170 2276 2.351253 CGCTAGCTAGCTGTGAATCGAT 60.351 50.000 36.02 0.00 46.85 3.59
2171 2277 1.002359 CGCTAGCTAGCTGTGAATCGA 60.002 52.381 36.02 3.26 46.85 3.59
2172 2278 1.403493 CGCTAGCTAGCTGTGAATCG 58.597 55.000 36.02 18.73 46.85 3.34
2173 2279 1.135867 GCGCTAGCTAGCTGTGAATC 58.864 55.000 36.02 16.49 46.85 2.52
2174 2280 0.461548 TGCGCTAGCTAGCTGTGAAT 59.538 50.000 36.02 1.87 46.85 2.57
2175 2281 0.179127 CTGCGCTAGCTAGCTGTGAA 60.179 55.000 36.02 19.24 46.85 3.18
2176 2282 1.315981 ACTGCGCTAGCTAGCTGTGA 61.316 55.000 36.02 19.38 46.85 3.58
2177 2283 0.869454 GACTGCGCTAGCTAGCTGTG 60.869 60.000 36.02 27.15 46.85 3.66
2178 2284 1.435515 GACTGCGCTAGCTAGCTGT 59.564 57.895 36.02 30.13 46.85 4.40
2179 2285 1.656875 CGACTGCGCTAGCTAGCTG 60.657 63.158 36.02 29.61 46.85 4.24
2180 2286 0.814410 TACGACTGCGCTAGCTAGCT 60.814 55.000 36.02 23.12 46.85 3.32
2181 2287 0.384974 CTACGACTGCGCTAGCTAGC 60.385 60.000 31.88 31.88 45.42 3.42
2211 2317 0.670706 TAGCTGAATCGATGCGAGCT 59.329 50.000 24.52 24.52 39.91 4.09
2215 2321 1.771656 CGCTAGCTGAATCGATGCG 59.228 57.895 13.93 9.21 36.19 4.73
2218 2324 1.372251 CCGCGCTAGCTGAATCGAT 60.372 57.895 13.93 0.00 42.32 3.59
2219 2325 2.026157 CCGCGCTAGCTGAATCGA 59.974 61.111 13.93 0.00 42.32 3.59
2220 2326 3.696426 GCCGCGCTAGCTGAATCG 61.696 66.667 13.93 8.00 42.32 3.34
2221 2327 2.279784 AGCCGCGCTAGCTGAATC 60.280 61.111 19.49 0.00 39.69 2.52
2238 2354 0.101399 GCGAGCAAGCTAGCTAGACA 59.899 55.000 25.15 0.00 46.75 3.41
2241 2357 1.417372 GATGCGAGCAAGCTAGCTAG 58.583 55.000 19.70 16.84 46.75 3.42
2292 2445 1.002134 CCATGAAACTCACCCGGCT 60.002 57.895 0.00 0.00 0.00 5.52
2295 2448 1.266718 CAACACCATGAAACTCACCCG 59.733 52.381 0.00 0.00 0.00 5.28
2297 2450 1.000274 GCCAACACCATGAAACTCACC 60.000 52.381 0.00 0.00 0.00 4.02
2298 2451 1.334960 CGCCAACACCATGAAACTCAC 60.335 52.381 0.00 0.00 0.00 3.51
2299 2452 0.950836 CGCCAACACCATGAAACTCA 59.049 50.000 0.00 0.00 0.00 3.41
2303 2472 0.893270 CTCCCGCCAACACCATGAAA 60.893 55.000 0.00 0.00 0.00 2.69
2311 2480 1.841302 AATCTCTGCTCCCGCCAACA 61.841 55.000 0.00 0.00 34.43 3.33
2341 2510 3.871074 GCCCTAAATACCGGTCAACACTT 60.871 47.826 12.40 0.00 0.00 3.16
2343 2512 2.011947 GCCCTAAATACCGGTCAACAC 58.988 52.381 12.40 0.00 0.00 3.32
2344 2513 1.065272 GGCCCTAAATACCGGTCAACA 60.065 52.381 12.40 0.00 0.00 3.33
2379 2548 8.726988 CGAAACCCTCATATCTTTAGTTTTGAA 58.273 33.333 0.00 0.00 31.65 2.69
2386 2555 5.291905 ACCCGAAACCCTCATATCTTTAG 57.708 43.478 0.00 0.00 0.00 1.85
2387 2556 5.677567 GAACCCGAAACCCTCATATCTTTA 58.322 41.667 0.00 0.00 0.00 1.85
2388 2557 4.524053 GAACCCGAAACCCTCATATCTTT 58.476 43.478 0.00 0.00 0.00 2.52
2389 2558 3.431766 CGAACCCGAAACCCTCATATCTT 60.432 47.826 0.00 0.00 38.22 2.40
2408 2578 5.680594 TTAAGAGGCCCTATAAACACGAA 57.319 39.130 0.00 0.00 0.00 3.85
2433 2603 9.908152 CCTTAAAATTGTCCGACTCTTAAATTT 57.092 29.630 0.00 0.00 0.00 1.82
2434 2604 8.520351 CCCTTAAAATTGTCCGACTCTTAAATT 58.480 33.333 0.00 0.00 0.00 1.82
2435 2605 7.122204 CCCCTTAAAATTGTCCGACTCTTAAAT 59.878 37.037 0.00 0.00 0.00 1.40
2442 2612 3.329814 AGACCCCTTAAAATTGTCCGACT 59.670 43.478 0.00 0.00 0.00 4.18
2487 2657 5.767816 AAAATAACCGCTTTGACAGTTCT 57.232 34.783 0.00 0.00 0.00 3.01
2494 2664 3.410508 ACCCGTAAAATAACCGCTTTGA 58.589 40.909 0.00 0.00 0.00 2.69
2495 2665 3.835378 ACCCGTAAAATAACCGCTTTG 57.165 42.857 0.00 0.00 0.00 2.77
2499 2670 3.491356 GTCAAACCCGTAAAATAACCGC 58.509 45.455 0.00 0.00 0.00 5.68
2501 2672 5.648178 ATGGTCAAACCCGTAAAATAACC 57.352 39.130 0.00 0.00 37.50 2.85
2510 2681 3.272581 CCGTATAAATGGTCAAACCCGT 58.727 45.455 0.00 0.00 37.50 5.28
2512 2683 3.888583 TCCCGTATAAATGGTCAAACCC 58.111 45.455 0.00 0.00 37.50 4.11
2523 2694 5.105716 GCATCTCTAGCAGATCCCGTATAAA 60.106 44.000 0.00 0.00 40.20 1.40
2581 2752 1.076727 CGGGGGCCTTCCTCTTTTT 59.923 57.895 0.84 0.00 32.36 1.94
2582 2753 2.763902 CGGGGGCCTTCCTCTTTT 59.236 61.111 0.84 0.00 32.36 2.27
2583 2754 3.339093 CCGGGGGCCTTCCTCTTT 61.339 66.667 0.84 0.00 32.36 2.52
2595 2766 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2596 2767 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
2597 2768 3.473647 TCCAGATGCAGAGGCCGG 61.474 66.667 0.00 0.00 40.13 6.13
2598 2769 2.202987 GTCCAGATGCAGAGGCCG 60.203 66.667 0.00 0.00 40.13 6.13
2599 2770 2.037620 ATCGTCCAGATGCAGAGGCC 62.038 60.000 0.00 0.00 38.36 5.19
2600 2771 1.445095 ATCGTCCAGATGCAGAGGC 59.555 57.895 0.00 0.00 38.36 4.70
2608 2779 1.164662 GCTGCATGCATCGTCCAGAT 61.165 55.000 22.97 0.00 42.31 2.90
2609 2780 1.816679 GCTGCATGCATCGTCCAGA 60.817 57.895 22.97 0.00 42.31 3.86
2610 2781 2.713770 GCTGCATGCATCGTCCAG 59.286 61.111 22.97 8.76 42.31 3.86
2611 2782 2.825387 GGCTGCATGCATCGTCCA 60.825 61.111 22.97 0.00 45.15 4.02
2612 2783 2.825387 TGGCTGCATGCATCGTCC 60.825 61.111 22.97 19.03 45.15 4.79
2613 2784 1.651240 AAGTGGCTGCATGCATCGTC 61.651 55.000 22.97 13.00 45.15 4.20
2614 2785 1.246056 AAAGTGGCTGCATGCATCGT 61.246 50.000 22.97 7.77 45.15 3.73
2615 2786 0.734309 TAAAGTGGCTGCATGCATCG 59.266 50.000 22.97 12.00 45.15 3.84
2616 2787 3.447918 AATAAAGTGGCTGCATGCATC 57.552 42.857 22.97 17.75 45.15 3.91
2617 2788 5.540400 ATTAATAAAGTGGCTGCATGCAT 57.460 34.783 22.97 6.91 45.15 3.96
2618 2789 5.341872 AATTAATAAAGTGGCTGCATGCA 57.658 34.783 21.29 21.29 45.15 3.96
2619 2790 7.652909 TGAATAATTAATAAAGTGGCTGCATGC 59.347 33.333 11.82 11.82 41.94 4.06
2620 2791 9.701098 ATGAATAATTAATAAAGTGGCTGCATG 57.299 29.630 0.50 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.