Multiple sequence alignment - TraesCS1A01G113800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G113800 chr1A 100.000 5446 0 0 1 5446 117243576 117249021 0.000000e+00 10057.0
1 TraesCS1A01G113800 chr1A 87.500 72 9 0 3979 4050 14507071 14507142 3.500000e-12 84.2
2 TraesCS1A01G113800 chr1A 86.364 66 6 1 4989 5054 14603313 14603251 9.790000e-08 69.4
3 TraesCS1A01G113800 chr1A 100.000 32 0 0 1487 1518 7185737 7185768 5.890000e-05 60.2
4 TraesCS1A01G113800 chr1D 95.323 4832 169 26 1 4808 111088303 111093101 0.000000e+00 7618.0
5 TraesCS1A01G113800 chr1D 88.339 283 26 3 4877 5152 111093278 111093560 3.140000e-87 333.0
6 TraesCS1A01G113800 chr1D 88.889 72 8 0 3979 4050 13031615 13031686 7.510000e-14 89.8
7 TraesCS1A01G113800 chr1D 100.000 32 0 0 1487 1518 5518593 5518624 5.890000e-05 60.2
8 TraesCS1A01G113800 chr1B 94.144 4645 168 44 343 4919 169693173 169697781 0.000000e+00 6975.0
9 TraesCS1A01G113800 chr1B 93.452 336 17 4 1 336 169692248 169692578 1.360000e-135 494.0
10 TraesCS1A01G113800 chr1B 77.778 153 26 4 3951 4096 687276776 687276625 2.700000e-13 87.9
11 TraesCS1A01G113800 chr1B 89.394 66 7 0 3985 4050 18420162 18420097 3.500000e-12 84.2
12 TraesCS1A01G113800 chr1B 95.238 42 1 1 1748 1789 328937229 328937269 1.270000e-06 65.8
13 TraesCS1A01G113800 chr1B 100.000 32 0 0 1487 1518 8256002 8256033 5.890000e-05 60.2
14 TraesCS1A01G113800 chr3D 82.889 3302 492 60 1044 4299 46580488 46583762 0.000000e+00 2900.0
15 TraesCS1A01G113800 chr3B 82.476 3304 507 57 1044 4299 72950341 72953620 0.000000e+00 2828.0
16 TraesCS1A01G113800 chr3A 83.145 2836 427 41 1044 3847 57947703 57944887 0.000000e+00 2542.0
17 TraesCS1A01G113800 chr3A 89.685 349 36 0 3951 4299 57944789 57944441 3.870000e-121 446.0
18 TraesCS1A01G113800 chr6B 95.969 1290 48 3 2304 3591 11954581 11955868 0.000000e+00 2091.0
19 TraesCS1A01G113800 chr6B 100.000 41 0 0 1333 1373 11954532 11954572 5.850000e-10 76.8
20 TraesCS1A01G113800 chr7B 86.007 293 35 6 5155 5443 468729333 468729043 5.300000e-80 309.0
21 TraesCS1A01G113800 chr7B 86.260 262 31 5 5155 5412 41303688 41303428 4.150000e-71 279.0
22 TraesCS1A01G113800 chr7D 87.732 269 25 6 5155 5416 105927090 105926823 1.910000e-79 307.0
23 TraesCS1A01G113800 chr7D 85.240 271 30 8 5155 5416 126966552 126966821 2.500000e-68 270.0
24 TraesCS1A01G113800 chr5D 88.446 251 24 5 5155 5401 45253928 45254177 1.150000e-76 298.0
25 TraesCS1A01G113800 chrUn 86.466 266 30 5 5155 5414 399317863 399318128 2.480000e-73 287.0
26 TraesCS1A01G113800 chrUn 86.466 266 30 5 5155 5414 400072713 400072978 2.480000e-73 287.0
27 TraesCS1A01G113800 chr4B 87.903 248 23 5 5155 5396 387337353 387337107 8.930000e-73 285.0
28 TraesCS1A01G113800 chr2B 87.347 245 28 3 5155 5397 120535239 120534996 1.490000e-70 278.0
29 TraesCS1A01G113800 chr5A 72.608 533 108 28 3261 3765 470195563 470196085 2.050000e-29 141.0
30 TraesCS1A01G113800 chr5B 72.388 536 104 33 3261 3765 436258419 436258941 4.430000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G113800 chr1A 117243576 117249021 5445 False 10057.0 10057 100.0000 1 5446 1 chr1A.!!$F3 5445
1 TraesCS1A01G113800 chr1D 111088303 111093560 5257 False 3975.5 7618 91.8310 1 5152 2 chr1D.!!$F3 5151
2 TraesCS1A01G113800 chr1B 169692248 169697781 5533 False 3734.5 6975 93.7980 1 4919 2 chr1B.!!$F3 4918
3 TraesCS1A01G113800 chr3D 46580488 46583762 3274 False 2900.0 2900 82.8890 1044 4299 1 chr3D.!!$F1 3255
4 TraesCS1A01G113800 chr3B 72950341 72953620 3279 False 2828.0 2828 82.4760 1044 4299 1 chr3B.!!$F1 3255
5 TraesCS1A01G113800 chr3A 57944441 57947703 3262 True 1494.0 2542 86.4150 1044 4299 2 chr3A.!!$R1 3255
6 TraesCS1A01G113800 chr6B 11954532 11955868 1336 False 1083.9 2091 97.9845 1333 3591 2 chr6B.!!$F1 2258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 1241 0.178915 TTTCCAAGGAGAGACCGGGA 60.179 55.000 6.32 0.00 44.74 5.14 F
714 1314 0.611062 GGTACAAAGGTGGCCTTCCC 60.611 60.000 3.32 0.69 43.92 3.97 F
975 1594 1.135315 TCGGTAGTTGCATGGTACGAC 60.135 52.381 0.00 0.00 0.00 4.34 F
1992 2614 1.215647 GTCGATCAACGGGCTCACT 59.784 57.895 0.00 0.00 42.82 3.41 F
2636 3258 2.025226 ACCTCGACCTCTCCTACAATGA 60.025 50.000 0.00 0.00 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2439 3061 0.034186 TCCCAAGCATGCCGATTTCT 60.034 50.000 15.66 0.0 0.00 2.52 R
2520 3142 2.124695 GTGAGGTTCCGGCATCCC 60.125 66.667 0.00 0.0 0.00 3.85 R
2670 3292 2.866762 GAGCTTTGTCAACGAAGTGAGT 59.133 45.455 10.95 0.0 45.00 3.41 R
3945 4593 1.725641 CAGCCGTACTCTGCATCAAA 58.274 50.000 0.00 0.0 0.00 2.69 R
4479 5207 0.240678 TGCATTGTCAACATCGCACC 59.759 50.000 3.62 0.0 31.27 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.450688 GCTGTAGTGGTAGTATCTCCTTGTG 60.451 48.000 0.00 0.00 0.00 3.33
198 199 3.358111 TTCAAACTGTTGGACTGTGGA 57.642 42.857 0.00 0.00 35.29 4.02
207 208 0.615331 TGGACTGTGGATGCTCTTCC 59.385 55.000 0.00 2.06 36.24 3.46
248 249 3.976169 TGCAATTGCCACACTTTAGAAC 58.024 40.909 26.94 0.00 41.18 3.01
269 270 2.565391 CCCAAAATTACACCAAGGTCCC 59.435 50.000 0.00 0.00 0.00 4.46
306 307 8.385898 TGTTAAGTAGTAACCAATCCAAGTTG 57.614 34.615 0.00 0.00 41.35 3.16
307 308 7.994334 TGTTAAGTAGTAACCAATCCAAGTTGT 59.006 33.333 1.45 0.00 41.35 3.32
425 1013 0.747283 CTCCTGGCTGCTAGCAAAGG 60.747 60.000 24.94 24.94 44.75 3.11
448 1036 6.072008 AGGTGTTACCGCCGTTAAAATAAAAT 60.072 34.615 0.00 0.00 46.35 1.82
449 1037 7.120432 AGGTGTTACCGCCGTTAAAATAAAATA 59.880 33.333 0.00 0.00 46.35 1.40
451 1039 9.122613 GTGTTACCGCCGTTAAAATAAAATAAA 57.877 29.630 0.00 0.00 0.00 1.40
452 1040 9.683069 TGTTACCGCCGTTAAAATAAAATAAAA 57.317 25.926 0.00 0.00 0.00 1.52
508 1096 1.676916 CGTTGGTGATCTGATGCCTGT 60.677 52.381 0.00 0.00 0.00 4.00
596 1189 2.917933 TGAAGGCGGTGATAATTCAGG 58.082 47.619 0.00 0.00 30.85 3.86
606 1199 4.345257 GGTGATAATTCAGGAGTAGAGGCA 59.655 45.833 0.00 0.00 30.85 4.75
607 1200 5.012561 GGTGATAATTCAGGAGTAGAGGCAT 59.987 44.000 0.00 0.00 30.85 4.40
608 1201 6.162777 GTGATAATTCAGGAGTAGAGGCATC 58.837 44.000 0.00 0.00 30.85 3.91
609 1202 6.014669 GTGATAATTCAGGAGTAGAGGCATCT 60.015 42.308 6.01 6.01 34.26 2.90
611 1204 3.388552 TTCAGGAGTAGAGGCATCTGA 57.611 47.619 11.96 0.00 36.96 3.27
614 1207 3.030291 CAGGAGTAGAGGCATCTGAAGT 58.970 50.000 11.96 0.00 36.96 3.01
627 1227 5.509501 GGCATCTGAAGTTGAACAATTTCCA 60.510 40.000 16.09 6.99 36.55 3.53
634 1234 6.039717 TGAAGTTGAACAATTTCCAAGGAGAG 59.960 38.462 16.09 0.00 36.55 3.20
635 1235 5.694995 AGTTGAACAATTTCCAAGGAGAGA 58.305 37.500 0.00 0.00 0.00 3.10
636 1236 5.532779 AGTTGAACAATTTCCAAGGAGAGAC 59.467 40.000 0.00 0.00 0.00 3.36
637 1237 4.398319 TGAACAATTTCCAAGGAGAGACC 58.602 43.478 0.00 0.00 39.35 3.85
638 1238 3.059352 ACAATTTCCAAGGAGAGACCG 57.941 47.619 0.00 0.00 44.74 4.79
639 1239 2.290323 ACAATTTCCAAGGAGAGACCGG 60.290 50.000 0.00 0.00 44.74 5.28
640 1240 0.912486 ATTTCCAAGGAGAGACCGGG 59.088 55.000 6.32 0.00 44.74 5.73
641 1241 0.178915 TTTCCAAGGAGAGACCGGGA 60.179 55.000 6.32 0.00 44.74 5.14
642 1242 0.614979 TTCCAAGGAGAGACCGGGAG 60.615 60.000 6.32 0.00 43.81 4.30
643 1243 1.000486 CCAAGGAGAGACCGGGAGA 60.000 63.158 6.32 0.00 44.74 3.71
644 1244 1.040339 CCAAGGAGAGACCGGGAGAG 61.040 65.000 6.32 0.00 44.74 3.20
645 1245 1.040339 CAAGGAGAGACCGGGAGAGG 61.040 65.000 6.32 0.00 44.74 3.69
714 1314 0.611062 GGTACAAAGGTGGCCTTCCC 60.611 60.000 3.32 0.69 43.92 3.97
719 1319 2.460476 AAAGGTGGCCTTCCCCCATG 62.460 60.000 3.32 0.00 43.92 3.66
721 1321 4.066139 GTGGCCTTCCCCCATGCT 62.066 66.667 3.32 0.00 34.34 3.79
722 1322 4.064768 TGGCCTTCCCCCATGCTG 62.065 66.667 3.32 0.00 0.00 4.41
723 1323 4.847367 GGCCTTCCCCCATGCTGG 62.847 72.222 0.00 0.00 37.25 4.85
735 1340 1.386533 CATGCTGGTCTCATCAACCC 58.613 55.000 0.00 0.00 35.84 4.11
900 1519 5.084519 ACACCTCTAGACCACACAATTCTA 58.915 41.667 0.00 0.00 0.00 2.10
912 1531 8.534954 ACCACACAATTCTATAGAGTTAGCTA 57.465 34.615 9.90 0.00 0.00 3.32
915 1534 8.414003 CACACAATTCTATAGAGTTAGCTACCA 58.586 37.037 9.90 0.00 0.00 3.25
975 1594 1.135315 TCGGTAGTTGCATGGTACGAC 60.135 52.381 0.00 0.00 0.00 4.34
977 1596 2.268298 GGTAGTTGCATGGTACGACTG 58.732 52.381 0.00 0.00 33.70 3.51
1578 2200 3.809013 AGGATTCCGGCCGCCATT 61.809 61.111 22.85 4.35 0.00 3.16
1992 2614 1.215647 GTCGATCAACGGGCTCACT 59.784 57.895 0.00 0.00 42.82 3.41
2636 3258 2.025226 ACCTCGACCTCTCCTACAATGA 60.025 50.000 0.00 0.00 0.00 2.57
2763 3385 3.740495 CTCCCGCCTCCAGCTCCTA 62.740 68.421 0.00 0.00 40.39 2.94
3342 3982 4.485834 CCGGCGAACGTGATCGGA 62.486 66.667 9.30 0.00 42.94 4.55
3853 4494 3.269347 CCGGTAAGCATTCCGCCG 61.269 66.667 1.02 0.00 44.63 6.46
3905 4546 8.725148 CAACTCTGCTACTCAGTTAAAATTCAT 58.275 33.333 0.00 0.00 43.32 2.57
3944 4592 4.331443 CCGGATTAACATTTGTCGTCATGA 59.669 41.667 0.00 0.00 0.00 3.07
3945 4593 5.007626 CCGGATTAACATTTGTCGTCATGAT 59.992 40.000 0.00 0.00 0.00 2.45
3962 4663 2.279741 TGATTTGATGCAGAGTACGGC 58.720 47.619 0.00 0.99 37.70 5.68
4367 5095 3.012518 CAAACTTATGGCTCTCACCAGG 58.987 50.000 0.00 0.00 44.71 4.45
4520 5254 2.301009 ACCTTGTGTACTTTAGGGGACG 59.699 50.000 10.92 0.00 31.91 4.79
4817 5563 4.455877 GCACATGCCACCTATTATTCCTAC 59.544 45.833 0.00 0.00 34.31 3.18
4841 5587 6.158023 TGTCTCGTTTCTCTTTCTTTAGGT 57.842 37.500 0.00 0.00 0.00 3.08
4867 5613 2.357952 GGTCCAACACTGGTTTGTTCTC 59.642 50.000 0.00 0.00 43.97 2.87
4892 5782 5.554822 TTACATTACCCAGATGCGTTTTC 57.445 39.130 0.00 0.00 0.00 2.29
4924 5814 4.764823 TGGATCAGTTTGTACAAATGGGAC 59.235 41.667 23.11 11.34 32.36 4.46
4933 5823 3.509575 TGTACAAATGGGACCTGCATTTC 59.490 43.478 5.90 0.00 0.00 2.17
4951 5841 6.072508 TGCATTTCTGGATTGAACTGTCTAAC 60.073 38.462 0.00 0.00 31.82 2.34
4953 5843 7.524912 CATTTCTGGATTGAACTGTCTAACTG 58.475 38.462 0.00 0.00 0.00 3.16
4956 5846 7.009179 TCTGGATTGAACTGTCTAACTGATT 57.991 36.000 0.00 0.00 0.00 2.57
4957 5847 6.875726 TCTGGATTGAACTGTCTAACTGATTG 59.124 38.462 0.00 0.00 0.00 2.67
4958 5848 5.939883 TGGATTGAACTGTCTAACTGATTGG 59.060 40.000 0.00 0.00 0.00 3.16
4962 5852 1.985159 ACTGTCTAACTGATTGGGCCA 59.015 47.619 0.00 0.00 0.00 5.36
4987 5877 3.498774 AGGCTAGCAACATGGGATAAG 57.501 47.619 18.24 0.00 0.00 1.73
5000 5890 4.502036 TGGGATAAGAGATGATACCCCA 57.498 45.455 0.00 0.00 40.03 4.96
5011 5901 3.378861 TGATACCCCATGCATTGTTGA 57.621 42.857 0.00 0.00 0.00 3.18
5019 5909 3.956199 CCCATGCATTGTTGAGGTAATCT 59.044 43.478 0.00 0.00 0.00 2.40
5028 5918 9.423061 GCATTGTTGAGGTAATCTTGTTAAAAT 57.577 29.630 0.00 0.00 0.00 1.82
5111 6001 9.654663 AGTATTATAGGTCGGATTTGCTAATTC 57.345 33.333 0.00 0.00 0.00 2.17
5114 6004 4.762289 AGGTCGGATTTGCTAATTCTCT 57.238 40.909 0.00 0.00 0.00 3.10
5115 6005 4.446371 AGGTCGGATTTGCTAATTCTCTG 58.554 43.478 0.00 0.00 0.00 3.35
5142 6039 8.816894 AGGATTAACAAAGTCTCATCTAACTCA 58.183 33.333 0.00 0.00 0.00 3.41
5152 6049 7.721402 AGTCTCATCTAACTCATACACCAATC 58.279 38.462 0.00 0.00 0.00 2.67
5153 6050 6.638873 GTCTCATCTAACTCATACACCAATCG 59.361 42.308 0.00 0.00 0.00 3.34
5154 6051 6.321435 TCTCATCTAACTCATACACCAATCGT 59.679 38.462 0.00 0.00 0.00 3.73
5172 6069 4.332186 TCGTGTTAGAGATACGACACAC 57.668 45.455 6.33 0.00 45.21 3.82
5173 6070 3.747529 TCGTGTTAGAGATACGACACACA 59.252 43.478 6.33 0.00 45.21 3.72
5174 6071 4.213906 TCGTGTTAGAGATACGACACACAA 59.786 41.667 6.33 0.00 45.21 3.33
5175 6072 5.093457 CGTGTTAGAGATACGACACACAAT 58.907 41.667 6.33 0.00 44.52 2.71
5176 6073 5.227391 CGTGTTAGAGATACGACACACAATC 59.773 44.000 6.33 0.00 44.52 2.67
5177 6074 6.090783 GTGTTAGAGATACGACACACAATCA 58.909 40.000 0.00 0.00 38.91 2.57
5178 6075 6.584942 GTGTTAGAGATACGACACACAATCAA 59.415 38.462 0.00 0.00 38.91 2.57
5179 6076 7.115805 GTGTTAGAGATACGACACACAATCAAA 59.884 37.037 0.00 0.00 38.91 2.69
5180 6077 7.654116 TGTTAGAGATACGACACACAATCAAAA 59.346 33.333 0.00 0.00 0.00 2.44
5181 6078 6.467723 AGAGATACGACACACAATCAAAAC 57.532 37.500 0.00 0.00 0.00 2.43
5182 6079 5.118664 AGAGATACGACACACAATCAAAACG 59.881 40.000 0.00 0.00 0.00 3.60
5183 6080 4.986034 AGATACGACACACAATCAAAACGA 59.014 37.500 0.00 0.00 0.00 3.85
5184 6081 3.313274 ACGACACACAATCAAAACGAC 57.687 42.857 0.00 0.00 0.00 4.34
5185 6082 2.673862 ACGACACACAATCAAAACGACA 59.326 40.909 0.00 0.00 0.00 4.35
5186 6083 3.125487 ACGACACACAATCAAAACGACAA 59.875 39.130 0.00 0.00 0.00 3.18
5187 6084 4.092120 CGACACACAATCAAAACGACAAA 58.908 39.130 0.00 0.00 0.00 2.83
5188 6085 4.202158 CGACACACAATCAAAACGACAAAG 59.798 41.667 0.00 0.00 0.00 2.77
5189 6086 5.303747 ACACACAATCAAAACGACAAAGA 57.696 34.783 0.00 0.00 0.00 2.52
5190 6087 5.704888 ACACACAATCAAAACGACAAAGAA 58.295 33.333 0.00 0.00 0.00 2.52
5191 6088 5.571357 ACACACAATCAAAACGACAAAGAAC 59.429 36.000 0.00 0.00 0.00 3.01
5192 6089 4.791163 ACACAATCAAAACGACAAAGAACG 59.209 37.500 0.00 0.00 0.00 3.95
5193 6090 5.025190 CACAATCAAAACGACAAAGAACGA 58.975 37.500 0.00 0.00 0.00 3.85
5194 6091 5.509972 CACAATCAAAACGACAAAGAACGAA 59.490 36.000 0.00 0.00 0.00 3.85
5195 6092 6.032985 CACAATCAAAACGACAAAGAACGAAA 59.967 34.615 0.00 0.00 0.00 3.46
5196 6093 6.583050 ACAATCAAAACGACAAAGAACGAAAA 59.417 30.769 0.00 0.00 0.00 2.29
5197 6094 5.978593 TCAAAACGACAAAGAACGAAAAC 57.021 34.783 0.00 0.00 0.00 2.43
5198 6095 5.450171 TCAAAACGACAAAGAACGAAAACA 58.550 33.333 0.00 0.00 0.00 2.83
5199 6096 5.913514 TCAAAACGACAAAGAACGAAAACAA 59.086 32.000 0.00 0.00 0.00 2.83
5200 6097 5.985526 AAACGACAAAGAACGAAAACAAG 57.014 34.783 0.00 0.00 0.00 3.16
5201 6098 3.422655 ACGACAAAGAACGAAAACAAGC 58.577 40.909 0.00 0.00 0.00 4.01
5202 6099 2.458966 CGACAAAGAACGAAAACAAGCG 59.541 45.455 0.00 0.00 0.00 4.68
5203 6100 3.676540 GACAAAGAACGAAAACAAGCGA 58.323 40.909 0.00 0.00 0.00 4.93
5204 6101 3.680789 ACAAAGAACGAAAACAAGCGAG 58.319 40.909 0.00 0.00 0.00 5.03
5205 6102 3.035942 CAAAGAACGAAAACAAGCGAGG 58.964 45.455 0.00 0.00 0.00 4.63
5206 6103 1.226746 AGAACGAAAACAAGCGAGGG 58.773 50.000 0.00 0.00 0.00 4.30
5207 6104 1.202604 AGAACGAAAACAAGCGAGGGA 60.203 47.619 0.00 0.00 0.00 4.20
5208 6105 0.942252 AACGAAAACAAGCGAGGGAC 59.058 50.000 0.00 0.00 0.00 4.46
5209 6106 0.179067 ACGAAAACAAGCGAGGGACA 60.179 50.000 0.00 0.00 0.00 4.02
5210 6107 1.156736 CGAAAACAAGCGAGGGACAT 58.843 50.000 0.00 0.00 0.00 3.06
5211 6108 1.135972 CGAAAACAAGCGAGGGACATG 60.136 52.381 0.00 0.00 0.00 3.21
5212 6109 2.151202 GAAAACAAGCGAGGGACATGA 58.849 47.619 0.00 0.00 0.00 3.07
5213 6110 1.813513 AAACAAGCGAGGGACATGAG 58.186 50.000 0.00 0.00 0.00 2.90
5214 6111 0.976641 AACAAGCGAGGGACATGAGA 59.023 50.000 0.00 0.00 0.00 3.27
5215 6112 1.198713 ACAAGCGAGGGACATGAGAT 58.801 50.000 0.00 0.00 0.00 2.75
5216 6113 1.556911 ACAAGCGAGGGACATGAGATT 59.443 47.619 0.00 0.00 0.00 2.40
5217 6114 2.026822 ACAAGCGAGGGACATGAGATTT 60.027 45.455 0.00 0.00 0.00 2.17
5218 6115 3.012518 CAAGCGAGGGACATGAGATTTT 58.987 45.455 0.00 0.00 0.00 1.82
5219 6116 4.191544 CAAGCGAGGGACATGAGATTTTA 58.808 43.478 0.00 0.00 0.00 1.52
5220 6117 4.065321 AGCGAGGGACATGAGATTTTAG 57.935 45.455 0.00 0.00 0.00 1.85
5221 6118 2.545946 GCGAGGGACATGAGATTTTAGC 59.454 50.000 0.00 0.00 0.00 3.09
5222 6119 2.797156 CGAGGGACATGAGATTTTAGCG 59.203 50.000 0.00 0.00 0.00 4.26
5223 6120 3.738281 CGAGGGACATGAGATTTTAGCGT 60.738 47.826 0.00 0.00 0.00 5.07
5224 6121 3.535561 AGGGACATGAGATTTTAGCGTG 58.464 45.455 0.00 0.00 0.00 5.34
5225 6122 2.614057 GGGACATGAGATTTTAGCGTGG 59.386 50.000 0.00 0.00 0.00 4.94
5226 6123 3.531538 GGACATGAGATTTTAGCGTGGA 58.468 45.455 0.00 0.00 0.00 4.02
5227 6124 3.938963 GGACATGAGATTTTAGCGTGGAA 59.061 43.478 0.00 0.00 0.00 3.53
5228 6125 4.394920 GGACATGAGATTTTAGCGTGGAAA 59.605 41.667 0.00 0.00 0.00 3.13
5229 6126 5.106317 GGACATGAGATTTTAGCGTGGAAAA 60.106 40.000 0.00 0.00 0.00 2.29
5230 6127 5.699839 ACATGAGATTTTAGCGTGGAAAAC 58.300 37.500 0.00 0.00 0.00 2.43
5231 6128 4.759516 TGAGATTTTAGCGTGGAAAACC 57.240 40.909 0.00 0.00 0.00 3.27
5232 6129 3.504520 TGAGATTTTAGCGTGGAAAACCC 59.495 43.478 0.00 0.00 0.00 4.11
5233 6130 2.823747 AGATTTTAGCGTGGAAAACCCC 59.176 45.455 0.00 0.00 0.00 4.95
5234 6131 2.368311 TTTTAGCGTGGAAAACCCCT 57.632 45.000 0.00 0.00 0.00 4.79
5235 6132 2.368311 TTTAGCGTGGAAAACCCCTT 57.632 45.000 0.00 0.00 0.00 3.95
5236 6133 1.900245 TTAGCGTGGAAAACCCCTTC 58.100 50.000 0.00 0.00 0.00 3.46
5237 6134 0.766131 TAGCGTGGAAAACCCCTTCA 59.234 50.000 0.00 0.00 0.00 3.02
5238 6135 0.106419 AGCGTGGAAAACCCCTTCAA 60.106 50.000 0.00 0.00 0.00 2.69
5239 6136 0.031585 GCGTGGAAAACCCCTTCAAC 59.968 55.000 0.00 0.00 0.00 3.18
5240 6137 1.394618 CGTGGAAAACCCCTTCAACA 58.605 50.000 0.00 0.00 29.77 3.33
5241 6138 1.066454 CGTGGAAAACCCCTTCAACAC 59.934 52.381 0.00 0.00 29.77 3.32
5242 6139 1.066454 GTGGAAAACCCCTTCAACACG 59.934 52.381 0.00 0.00 30.68 4.49
5243 6140 1.064611 TGGAAAACCCCTTCAACACGA 60.065 47.619 0.00 0.00 0.00 4.35
5244 6141 2.025898 GGAAAACCCCTTCAACACGAA 58.974 47.619 0.00 0.00 0.00 3.85
5254 6151 3.702330 CTTCAACACGAAGGGGAAAAAC 58.298 45.455 0.00 0.00 46.39 2.43
5255 6152 2.724454 TCAACACGAAGGGGAAAAACA 58.276 42.857 0.00 0.00 0.00 2.83
5256 6153 2.424246 TCAACACGAAGGGGAAAAACAC 59.576 45.455 0.00 0.00 0.00 3.32
5257 6154 2.131776 ACACGAAGGGGAAAAACACA 57.868 45.000 0.00 0.00 0.00 3.72
5258 6155 2.021457 ACACGAAGGGGAAAAACACAG 58.979 47.619 0.00 0.00 0.00 3.66
5259 6156 1.336755 CACGAAGGGGAAAAACACAGG 59.663 52.381 0.00 0.00 0.00 4.00
5260 6157 0.313987 CGAAGGGGAAAAACACAGGC 59.686 55.000 0.00 0.00 0.00 4.85
5261 6158 0.313987 GAAGGGGAAAAACACAGGCG 59.686 55.000 0.00 0.00 0.00 5.52
5262 6159 1.744320 AAGGGGAAAAACACAGGCGC 61.744 55.000 0.00 0.00 0.00 6.53
5263 6160 2.338620 GGGAAAAACACAGGCGCC 59.661 61.111 21.89 21.89 0.00 6.53
5264 6161 2.494530 GGGAAAAACACAGGCGCCA 61.495 57.895 31.54 0.00 0.00 5.69
5265 6162 1.007387 GGAAAAACACAGGCGCCAG 60.007 57.895 31.54 24.99 0.00 4.85
5266 6163 1.661509 GAAAAACACAGGCGCCAGC 60.662 57.895 31.54 0.33 44.18 4.85
5277 6174 3.297620 CGCCAGCCAGCCAAACTT 61.298 61.111 0.00 0.00 0.00 2.66
5278 6175 2.653115 GCCAGCCAGCCAAACTTC 59.347 61.111 0.00 0.00 0.00 3.01
5279 6176 2.202395 GCCAGCCAGCCAAACTTCA 61.202 57.895 0.00 0.00 0.00 3.02
5280 6177 1.662044 CCAGCCAGCCAAACTTCAC 59.338 57.895 0.00 0.00 0.00 3.18
5281 6178 0.825010 CCAGCCAGCCAAACTTCACT 60.825 55.000 0.00 0.00 0.00 3.41
5282 6179 1.545428 CCAGCCAGCCAAACTTCACTA 60.545 52.381 0.00 0.00 0.00 2.74
5283 6180 2.440409 CAGCCAGCCAAACTTCACTAT 58.560 47.619 0.00 0.00 0.00 2.12
5284 6181 3.609853 CAGCCAGCCAAACTTCACTATA 58.390 45.455 0.00 0.00 0.00 1.31
5285 6182 4.202441 CAGCCAGCCAAACTTCACTATAT 58.798 43.478 0.00 0.00 0.00 0.86
5286 6183 4.641989 CAGCCAGCCAAACTTCACTATATT 59.358 41.667 0.00 0.00 0.00 1.28
5287 6184 4.641989 AGCCAGCCAAACTTCACTATATTG 59.358 41.667 0.00 0.00 0.00 1.90
5288 6185 4.202050 GCCAGCCAAACTTCACTATATTGG 60.202 45.833 0.00 0.00 42.68 3.16
5289 6186 4.339247 CCAGCCAAACTTCACTATATTGGG 59.661 45.833 5.14 0.00 40.65 4.12
5290 6187 4.339247 CAGCCAAACTTCACTATATTGGGG 59.661 45.833 5.14 0.00 40.65 4.96
5291 6188 4.017499 AGCCAAACTTCACTATATTGGGGT 60.017 41.667 5.14 0.00 40.65 4.95
5292 6189 5.192923 AGCCAAACTTCACTATATTGGGGTA 59.807 40.000 5.14 0.00 40.65 3.69
5293 6190 5.531287 GCCAAACTTCACTATATTGGGGTAG 59.469 44.000 5.14 0.00 40.65 3.18
5294 6191 6.062095 CCAAACTTCACTATATTGGGGTAGG 58.938 44.000 0.00 0.00 37.47 3.18
5295 6192 6.353602 CCAAACTTCACTATATTGGGGTAGGT 60.354 42.308 0.00 0.00 37.47 3.08
5296 6193 6.903340 AACTTCACTATATTGGGGTAGGTT 57.097 37.500 0.00 0.00 0.00 3.50
5297 6194 8.269317 CAAACTTCACTATATTGGGGTAGGTTA 58.731 37.037 0.00 0.00 0.00 2.85
5298 6195 7.370905 ACTTCACTATATTGGGGTAGGTTAC 57.629 40.000 0.00 0.00 0.00 2.50
5299 6196 6.904654 ACTTCACTATATTGGGGTAGGTTACA 59.095 38.462 0.00 0.00 0.00 2.41
5300 6197 7.403813 ACTTCACTATATTGGGGTAGGTTACAA 59.596 37.037 0.00 0.00 0.00 2.41
5301 6198 7.752518 TCACTATATTGGGGTAGGTTACAAA 57.247 36.000 0.00 0.00 0.00 2.83
5302 6199 7.567458 TCACTATATTGGGGTAGGTTACAAAC 58.433 38.462 0.00 0.00 0.00 2.93
5303 6200 6.480981 CACTATATTGGGGTAGGTTACAAACG 59.519 42.308 0.00 0.00 0.00 3.60
5304 6201 3.793819 ATTGGGGTAGGTTACAAACGT 57.206 42.857 0.00 0.00 0.00 3.99
5305 6202 2.837532 TGGGGTAGGTTACAAACGTC 57.162 50.000 0.00 0.00 0.00 4.34
5306 6203 1.000731 TGGGGTAGGTTACAAACGTCG 59.999 52.381 0.00 0.00 0.00 5.12
5307 6204 1.672737 GGGGTAGGTTACAAACGTCGG 60.673 57.143 0.00 0.00 0.00 4.79
5308 6205 1.672737 GGGTAGGTTACAAACGTCGGG 60.673 57.143 0.00 0.00 0.00 5.14
5309 6206 1.672737 GGTAGGTTACAAACGTCGGGG 60.673 57.143 0.00 0.00 0.00 5.73
5310 6207 1.272212 GTAGGTTACAAACGTCGGGGA 59.728 52.381 0.00 0.00 0.00 4.81
5311 6208 0.978907 AGGTTACAAACGTCGGGGAT 59.021 50.000 0.00 0.00 0.00 3.85
5312 6209 1.348696 AGGTTACAAACGTCGGGGATT 59.651 47.619 0.00 0.00 0.00 3.01
5313 6210 2.153645 GGTTACAAACGTCGGGGATTT 58.846 47.619 0.00 0.00 0.00 2.17
5314 6211 2.095617 GGTTACAAACGTCGGGGATTTG 60.096 50.000 0.00 0.79 38.89 2.32
5315 6212 1.158434 TACAAACGTCGGGGATTTGC 58.842 50.000 0.00 0.00 36.91 3.68
5316 6213 0.820074 ACAAACGTCGGGGATTTGCA 60.820 50.000 0.00 0.00 36.91 4.08
5317 6214 0.312416 CAAACGTCGGGGATTTGCAA 59.688 50.000 0.00 0.00 0.00 4.08
5318 6215 0.312729 AAACGTCGGGGATTTGCAAC 59.687 50.000 0.00 0.00 0.00 4.17
5319 6216 0.536460 AACGTCGGGGATTTGCAACT 60.536 50.000 0.00 0.00 0.00 3.16
5320 6217 0.322322 ACGTCGGGGATTTGCAACTA 59.678 50.000 0.00 0.00 0.00 2.24
5321 6218 1.270947 ACGTCGGGGATTTGCAACTAA 60.271 47.619 0.00 0.00 0.00 2.24
5322 6219 2.014128 CGTCGGGGATTTGCAACTAAT 58.986 47.619 0.00 0.00 0.00 1.73
5323 6220 2.031683 CGTCGGGGATTTGCAACTAATC 59.968 50.000 0.00 0.00 0.00 1.75
5324 6221 3.013921 GTCGGGGATTTGCAACTAATCA 58.986 45.455 0.00 0.00 34.43 2.57
5325 6222 3.442273 GTCGGGGATTTGCAACTAATCAA 59.558 43.478 0.00 0.00 34.43 2.57
5326 6223 3.442273 TCGGGGATTTGCAACTAATCAAC 59.558 43.478 0.00 0.00 34.43 3.18
5327 6224 3.443681 CGGGGATTTGCAACTAATCAACT 59.556 43.478 0.00 0.00 34.43 3.16
5328 6225 4.638421 CGGGGATTTGCAACTAATCAACTA 59.362 41.667 0.00 0.00 34.43 2.24
5329 6226 5.299279 CGGGGATTTGCAACTAATCAACTAT 59.701 40.000 0.00 0.00 34.43 2.12
5330 6227 6.513393 CGGGGATTTGCAACTAATCAACTATC 60.513 42.308 0.00 0.00 34.43 2.08
5331 6228 6.239036 GGGGATTTGCAACTAATCAACTATCC 60.239 42.308 0.00 4.73 34.43 2.59
5332 6229 6.547510 GGGATTTGCAACTAATCAACTATCCT 59.452 38.462 15.46 0.00 33.38 3.24
5333 6230 7.420800 GGATTTGCAACTAATCAACTATCCTG 58.579 38.462 0.00 0.00 34.43 3.86
5334 6231 7.067494 GGATTTGCAACTAATCAACTATCCTGT 59.933 37.037 0.00 0.00 34.43 4.00
5335 6232 6.741992 TTGCAACTAATCAACTATCCTGTG 57.258 37.500 0.00 0.00 0.00 3.66
5336 6233 4.635765 TGCAACTAATCAACTATCCTGTGC 59.364 41.667 0.00 0.00 0.00 4.57
5337 6234 4.635765 GCAACTAATCAACTATCCTGTGCA 59.364 41.667 0.00 0.00 0.00 4.57
5338 6235 5.220739 GCAACTAATCAACTATCCTGTGCAG 60.221 44.000 0.00 0.00 0.00 4.41
5339 6236 4.446371 ACTAATCAACTATCCTGTGCAGC 58.554 43.478 0.00 0.00 0.00 5.25
5340 6237 1.945387 ATCAACTATCCTGTGCAGCG 58.055 50.000 0.00 0.00 0.00 5.18
5341 6238 0.108186 TCAACTATCCTGTGCAGCGG 60.108 55.000 0.00 0.00 0.00 5.52
5342 6239 1.450312 AACTATCCTGTGCAGCGGC 60.450 57.895 0.31 0.31 41.68 6.53
5343 6240 1.903877 AACTATCCTGTGCAGCGGCT 61.904 55.000 10.92 0.00 41.91 5.52
5344 6241 1.153289 CTATCCTGTGCAGCGGCTT 60.153 57.895 10.92 0.00 41.91 4.35
5345 6242 0.104855 CTATCCTGTGCAGCGGCTTA 59.895 55.000 10.92 0.00 41.91 3.09
5346 6243 0.179084 TATCCTGTGCAGCGGCTTAC 60.179 55.000 10.92 3.27 41.91 2.34
5347 6244 2.184020 ATCCTGTGCAGCGGCTTACA 62.184 55.000 10.92 14.05 41.91 2.41
5348 6245 1.965930 CCTGTGCAGCGGCTTACAA 60.966 57.895 10.92 3.49 41.91 2.41
5349 6246 1.499056 CTGTGCAGCGGCTTACAAG 59.501 57.895 10.92 8.06 41.91 3.16
5350 6247 0.950555 CTGTGCAGCGGCTTACAAGA 60.951 55.000 10.92 1.95 41.91 3.02
5351 6248 0.950555 TGTGCAGCGGCTTACAAGAG 60.951 55.000 10.92 0.00 41.91 2.85
5352 6249 1.375908 TGCAGCGGCTTACAAGAGG 60.376 57.895 10.92 0.00 41.91 3.69
5353 6250 1.376037 GCAGCGGCTTACAAGAGGT 60.376 57.895 0.00 0.00 36.96 3.85
5354 6251 0.108329 GCAGCGGCTTACAAGAGGTA 60.108 55.000 0.00 0.00 36.96 3.08
5355 6252 1.473434 GCAGCGGCTTACAAGAGGTAT 60.473 52.381 0.00 0.00 36.96 2.73
5356 6253 2.223971 GCAGCGGCTTACAAGAGGTATA 60.224 50.000 0.00 0.00 36.96 1.47
5357 6254 3.555168 GCAGCGGCTTACAAGAGGTATAT 60.555 47.826 0.00 0.00 36.96 0.86
5358 6255 4.321750 GCAGCGGCTTACAAGAGGTATATA 60.322 45.833 0.00 0.00 36.96 0.86
5359 6256 5.624738 GCAGCGGCTTACAAGAGGTATATAT 60.625 44.000 0.00 0.00 36.96 0.86
5360 6257 6.405508 GCAGCGGCTTACAAGAGGTATATATA 60.406 42.308 0.00 0.00 36.96 0.86
5361 6258 7.544622 CAGCGGCTTACAAGAGGTATATATAA 58.455 38.462 0.00 0.00 0.00 0.98
5362 6259 7.488471 CAGCGGCTTACAAGAGGTATATATAAC 59.512 40.741 0.00 0.00 0.00 1.89
5363 6260 7.177921 AGCGGCTTACAAGAGGTATATATAACA 59.822 37.037 10.41 0.00 0.00 2.41
5364 6261 7.275123 GCGGCTTACAAGAGGTATATATAACAC 59.725 40.741 10.41 3.92 0.00 3.32
5365 6262 8.301720 CGGCTTACAAGAGGTATATATAACACA 58.698 37.037 10.41 0.00 0.00 3.72
5371 6268 9.982651 ACAAGAGGTATATATAACACATGTGAC 57.017 33.333 31.94 16.06 0.00 3.67
5372 6269 9.424319 CAAGAGGTATATATAACACATGTGACC 57.576 37.037 31.94 23.51 0.00 4.02
5373 6270 8.958060 AGAGGTATATATAACACATGTGACCT 57.042 34.615 31.94 27.35 36.30 3.85
5376 6273 9.256228 AGGTATATATAACACATGTGACCTAGG 57.744 37.037 31.94 7.41 31.87 3.02
5377 6274 9.032624 GGTATATATAACACATGTGACCTAGGT 57.967 37.037 31.94 16.26 0.00 3.08
5384 6281 6.869206 ACACATGTGACCTAGGTTAATACT 57.131 37.500 31.94 0.47 0.00 2.12
5385 6282 6.640518 ACACATGTGACCTAGGTTAATACTG 58.359 40.000 31.94 11.49 0.00 2.74
5386 6283 6.439375 ACACATGTGACCTAGGTTAATACTGA 59.561 38.462 31.94 0.00 0.00 3.41
5387 6284 7.125811 ACACATGTGACCTAGGTTAATACTGAT 59.874 37.037 31.94 0.00 0.00 2.90
5388 6285 7.987458 CACATGTGACCTAGGTTAATACTGATT 59.013 37.037 21.64 0.00 0.00 2.57
5389 6286 8.204836 ACATGTGACCTAGGTTAATACTGATTC 58.795 37.037 17.53 0.00 0.00 2.52
5390 6287 6.802608 TGTGACCTAGGTTAATACTGATTCG 58.197 40.000 17.53 0.00 0.00 3.34
5391 6288 6.379133 TGTGACCTAGGTTAATACTGATTCGT 59.621 38.462 17.53 0.00 0.00 3.85
5392 6289 7.557358 TGTGACCTAGGTTAATACTGATTCGTA 59.443 37.037 17.53 0.00 0.00 3.43
5393 6290 7.859875 GTGACCTAGGTTAATACTGATTCGTAC 59.140 40.741 17.53 0.00 0.00 3.67
5394 6291 7.013655 TGACCTAGGTTAATACTGATTCGTACC 59.986 40.741 17.53 0.00 0.00 3.34
5395 6292 6.016777 ACCTAGGTTAATACTGATTCGTACCG 60.017 42.308 9.21 0.00 31.34 4.02
5396 6293 4.614946 AGGTTAATACTGATTCGTACCGC 58.385 43.478 0.00 0.00 31.34 5.68
5397 6294 3.423206 GGTTAATACTGATTCGTACCGCG 59.577 47.826 0.00 0.00 43.01 6.46
5398 6295 2.129823 AATACTGATTCGTACCGCGG 57.870 50.000 26.86 26.86 41.72 6.46
5399 6296 0.313043 ATACTGATTCGTACCGCGGG 59.687 55.000 31.76 12.37 41.72 6.13
5400 6297 1.727511 TACTGATTCGTACCGCGGGG 61.728 60.000 31.76 18.33 41.72 5.73
5401 6298 3.785189 CTGATTCGTACCGCGGGGG 62.785 68.421 31.76 17.94 41.72 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.099454 CCTACACAAAGATTGGAGATTAAGTAC 57.901 37.037 0.00 0.00 34.12 2.73
138 139 5.453480 GGTTCTTCCTCTACATGGATGGTAC 60.453 48.000 0.00 0.00 33.09 3.34
139 140 4.654262 GGTTCTTCCTCTACATGGATGGTA 59.346 45.833 0.00 0.00 33.09 3.25
198 199 0.908198 GTGAGACCTGGGAAGAGCAT 59.092 55.000 0.00 0.00 0.00 3.79
207 208 2.425312 CAGTGCTAGTAGTGAGACCTGG 59.575 54.545 9.89 0.00 0.00 4.45
248 249 2.565391 GGGACCTTGGTGTAATTTTGGG 59.435 50.000 0.00 0.00 0.00 4.12
269 270 8.768019 GGTTACTACTTAACAGTTTGTGGTTAG 58.232 37.037 11.40 1.46 41.87 2.34
306 307 1.884235 ACAAGCACTTCACAGCCTAC 58.116 50.000 0.00 0.00 0.00 3.18
307 308 2.638480 AACAAGCACTTCACAGCCTA 57.362 45.000 0.00 0.00 0.00 3.93
340 341 2.233431 GTGTGTCTCAGCTCTCAAGGAT 59.767 50.000 0.00 0.00 0.00 3.24
351 939 2.038952 TCATGGAAAGGGTGTGTCTCAG 59.961 50.000 0.00 0.00 0.00 3.35
425 1013 8.666580 TTATTTTATTTTAACGGCGGTAACAC 57.333 30.769 18.24 0.00 0.00 3.32
448 1036 4.830046 TGCCAAGCTGGTGAACTAATTTTA 59.170 37.500 0.00 0.00 40.46 1.52
449 1037 3.640967 TGCCAAGCTGGTGAACTAATTTT 59.359 39.130 0.00 0.00 40.46 1.82
451 1039 2.875296 TGCCAAGCTGGTGAACTAATT 58.125 42.857 0.00 0.00 40.46 1.40
452 1040 2.584835 TGCCAAGCTGGTGAACTAAT 57.415 45.000 0.00 0.00 40.46 1.73
465 1053 1.717194 AATTGCTTTGCGATGCCAAG 58.283 45.000 9.22 0.00 34.93 3.61
467 1055 2.090760 TCTAATTGCTTTGCGATGCCA 58.909 42.857 9.22 0.00 32.35 4.92
596 1189 4.727507 TCAACTTCAGATGCCTCTACTC 57.272 45.455 0.00 0.00 0.00 2.59
606 1199 6.550854 TCCTTGGAAATTGTTCAACTTCAGAT 59.449 34.615 8.55 0.00 35.25 2.90
607 1200 5.890985 TCCTTGGAAATTGTTCAACTTCAGA 59.109 36.000 8.55 0.00 35.25 3.27
608 1201 6.039717 TCTCCTTGGAAATTGTTCAACTTCAG 59.960 38.462 8.55 0.08 35.25 3.02
609 1202 5.890985 TCTCCTTGGAAATTGTTCAACTTCA 59.109 36.000 8.55 0.00 35.25 3.02
611 1204 6.039829 GTCTCTCCTTGGAAATTGTTCAACTT 59.960 38.462 0.00 0.00 35.25 2.66
614 1207 4.827284 GGTCTCTCCTTGGAAATTGTTCAA 59.173 41.667 0.00 0.00 35.25 2.69
627 1227 1.308326 CCTCTCCCGGTCTCTCCTT 59.692 63.158 0.00 0.00 0.00 3.36
634 1234 2.760385 CCTGTCCCTCTCCCGGTC 60.760 72.222 0.00 0.00 0.00 4.79
635 1235 4.400251 CCCTGTCCCTCTCCCGGT 62.400 72.222 0.00 0.00 0.00 5.28
636 1236 4.400251 ACCCTGTCCCTCTCCCGG 62.400 72.222 0.00 0.00 0.00 5.73
637 1237 3.077556 CACCCTGTCCCTCTCCCG 61.078 72.222 0.00 0.00 0.00 5.14
638 1238 2.122954 ACACCCTGTCCCTCTCCC 59.877 66.667 0.00 0.00 0.00 4.30
639 1239 2.294078 CCACACCCTGTCCCTCTCC 61.294 68.421 0.00 0.00 0.00 3.71
640 1240 0.252103 TACCACACCCTGTCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
641 1241 0.252284 CTACCACACCCTGTCCCTCT 60.252 60.000 0.00 0.00 0.00 3.69
642 1242 0.544595 ACTACCACACCCTGTCCCTC 60.545 60.000 0.00 0.00 0.00 4.30
643 1243 0.836400 CACTACCACACCCTGTCCCT 60.836 60.000 0.00 0.00 0.00 4.20
644 1244 1.125711 ACACTACCACACCCTGTCCC 61.126 60.000 0.00 0.00 0.00 4.46
645 1245 0.034896 CACACTACCACACCCTGTCC 59.965 60.000 0.00 0.00 0.00 4.02
719 1319 0.038166 TTGGGGTTGATGAGACCAGC 59.962 55.000 0.00 0.00 38.98 4.85
720 1320 2.584835 TTTGGGGTTGATGAGACCAG 57.415 50.000 0.00 0.00 38.98 4.00
721 1321 3.591527 AGTATTTGGGGTTGATGAGACCA 59.408 43.478 0.00 0.00 38.98 4.02
722 1322 4.080299 AGAGTATTTGGGGTTGATGAGACC 60.080 45.833 0.00 0.00 36.41 3.85
723 1323 5.104259 AGAGTATTTGGGGTTGATGAGAC 57.896 43.478 0.00 0.00 0.00 3.36
735 1340 7.189079 AGGTTAAAGAGGAGAGAGTATTTGG 57.811 40.000 0.00 0.00 0.00 3.28
900 1519 7.391388 AGGTAGTAGTGGTAGCTAACTCTAT 57.609 40.000 20.38 13.09 27.41 1.98
912 1531 5.331069 ACATGAGTACAAGGTAGTAGTGGT 58.669 41.667 0.00 0.00 0.00 4.16
915 1534 7.603651 CAAGAACATGAGTACAAGGTAGTAGT 58.396 38.462 0.00 0.00 0.00 2.73
975 1594 0.441533 CAACGCTAGCTTGTCTGCAG 59.558 55.000 13.93 7.63 34.99 4.41
977 1596 1.133458 GCAACGCTAGCTTGTCTGC 59.867 57.895 20.63 12.63 0.00 4.26
2268 2890 2.908015 GGCCCGGTCAGAGCATTA 59.092 61.111 0.00 0.00 0.00 1.90
2436 3058 0.101759 CAAGCATGCCGATTTCTGGG 59.898 55.000 15.66 0.00 0.00 4.45
2439 3061 0.034186 TCCCAAGCATGCCGATTTCT 60.034 50.000 15.66 0.00 0.00 2.52
2520 3142 2.124695 GTGAGGTTCCGGCATCCC 60.125 66.667 0.00 0.00 0.00 3.85
2586 3208 3.594134 CGAGAGCAATTCCTTGAAGAGT 58.406 45.455 0.00 0.00 34.04 3.24
2670 3292 2.866762 GAGCTTTGTCAACGAAGTGAGT 59.133 45.455 10.95 0.00 45.00 3.41
2712 3334 4.241555 GGTGGCATCGCTCCGGAT 62.242 66.667 3.57 0.00 0.00 4.18
2763 3385 4.719369 GAGTTGCCGCCGACGTCT 62.719 66.667 14.70 0.00 37.70 4.18
3075 3697 3.443925 CCAGAGCACCGCGAGAGA 61.444 66.667 8.23 0.00 0.00 3.10
3098 3720 4.103103 CGAGCTCACTGTCGCCGA 62.103 66.667 15.40 0.00 0.00 5.54
3106 3728 4.427661 GCGTGCCTCGAGCTCACT 62.428 66.667 24.04 0.00 44.23 3.41
3871 4512 2.680339 GAGTAGCAGAGTTGGAATTGCC 59.320 50.000 0.00 0.00 37.26 4.52
3905 4546 3.657398 TCCGGTAGTACATCTGGAGAA 57.343 47.619 0.00 0.00 34.60 2.87
3944 4592 2.283298 CAGCCGTACTCTGCATCAAAT 58.717 47.619 0.00 0.00 0.00 2.32
3945 4593 1.725641 CAGCCGTACTCTGCATCAAA 58.274 50.000 0.00 0.00 0.00 2.69
3962 4663 2.163010 GGTTGTGATCTTGGTCATGCAG 59.837 50.000 0.00 0.00 0.00 4.41
4479 5207 0.240678 TGCATTGTCAACATCGCACC 59.759 50.000 3.62 0.00 31.27 5.01
4520 5254 7.478520 AAGGACACATACATAATTTCTACGC 57.521 36.000 0.00 0.00 0.00 4.42
4817 5563 6.217294 ACCTAAAGAAAGAGAAACGAGACAG 58.783 40.000 0.00 0.00 0.00 3.51
4867 5613 3.476552 ACGCATCTGGGTAATGTAATGG 58.523 45.455 0.00 0.00 39.55 3.16
4892 5782 5.527214 TGTACAAACTGATCCACAACTTCTG 59.473 40.000 0.00 0.00 0.00 3.02
4924 5814 3.508793 ACAGTTCAATCCAGAAATGCAGG 59.491 43.478 4.32 0.00 44.79 4.85
4933 5823 6.093219 CCAATCAGTTAGACAGTTCAATCCAG 59.907 42.308 0.00 0.00 0.00 3.86
4962 5852 5.786121 ATCCCATGTTGCTAGCCTATAAT 57.214 39.130 13.29 0.00 0.00 1.28
4977 5867 4.784838 TGGGGTATCATCTCTTATCCCATG 59.215 45.833 0.00 0.00 42.62 3.66
4987 5877 3.759581 ACAATGCATGGGGTATCATCTC 58.240 45.455 5.94 0.00 0.00 2.75
5000 5890 6.594788 AACAAGATTACCTCAACAATGCAT 57.405 33.333 0.00 0.00 0.00 3.96
5011 5901 8.247562 TGCGCATTTATTTTAACAAGATTACCT 58.752 29.630 5.66 0.00 0.00 3.08
5019 5909 8.651588 CACCTAATTGCGCATTTATTTTAACAA 58.348 29.630 21.26 0.00 0.00 2.83
5075 5965 6.832384 TCCGACCTATAATACTCTCACACTTT 59.168 38.462 0.00 0.00 0.00 2.66
5078 5968 6.821031 ATCCGACCTATAATACTCTCACAC 57.179 41.667 0.00 0.00 0.00 3.82
5079 5969 7.658261 CAAATCCGACCTATAATACTCTCACA 58.342 38.462 0.00 0.00 0.00 3.58
5080 5970 6.586844 GCAAATCCGACCTATAATACTCTCAC 59.413 42.308 0.00 0.00 0.00 3.51
5091 5981 6.042093 TCAGAGAATTAGCAAATCCGACCTAT 59.958 38.462 0.00 0.00 0.00 2.57
5093 5983 4.162320 TCAGAGAATTAGCAAATCCGACCT 59.838 41.667 0.00 0.00 0.00 3.85
5094 5984 4.442706 TCAGAGAATTAGCAAATCCGACC 58.557 43.478 0.00 0.00 0.00 4.79
5111 6001 7.555087 AGATGAGACTTTGTTAATCCTCAGAG 58.445 38.462 0.00 0.00 34.65 3.35
5114 6004 8.816894 AGTTAGATGAGACTTTGTTAATCCTCA 58.183 33.333 0.00 0.00 35.48 3.86
5115 6005 9.308318 GAGTTAGATGAGACTTTGTTAATCCTC 57.692 37.037 0.00 0.00 0.00 3.71
5152 6049 4.074466 TGTGTGTCGTATCTCTAACACG 57.926 45.455 0.00 0.00 43.81 4.49
5153 6050 6.090783 TGATTGTGTGTCGTATCTCTAACAC 58.909 40.000 0.00 0.00 41.80 3.32
5154 6051 6.262193 TGATTGTGTGTCGTATCTCTAACA 57.738 37.500 0.00 0.00 0.00 2.41
5155 6052 7.576750 TTTGATTGTGTGTCGTATCTCTAAC 57.423 36.000 0.00 0.00 0.00 2.34
5156 6053 7.148869 CGTTTTGATTGTGTGTCGTATCTCTAA 60.149 37.037 0.00 0.00 0.00 2.10
5157 6054 6.307077 CGTTTTGATTGTGTGTCGTATCTCTA 59.693 38.462 0.00 0.00 0.00 2.43
5158 6055 5.118664 CGTTTTGATTGTGTGTCGTATCTCT 59.881 40.000 0.00 0.00 0.00 3.10
5159 6056 5.118050 TCGTTTTGATTGTGTGTCGTATCTC 59.882 40.000 0.00 0.00 0.00 2.75
5160 6057 4.986034 TCGTTTTGATTGTGTGTCGTATCT 59.014 37.500 0.00 0.00 0.00 1.98
5161 6058 5.070862 GTCGTTTTGATTGTGTGTCGTATC 58.929 41.667 0.00 0.00 0.00 2.24
5162 6059 4.508492 TGTCGTTTTGATTGTGTGTCGTAT 59.492 37.500 0.00 0.00 0.00 3.06
5163 6060 3.864003 TGTCGTTTTGATTGTGTGTCGTA 59.136 39.130 0.00 0.00 0.00 3.43
5164 6061 2.673862 TGTCGTTTTGATTGTGTGTCGT 59.326 40.909 0.00 0.00 0.00 4.34
5165 6062 3.311788 TGTCGTTTTGATTGTGTGTCG 57.688 42.857 0.00 0.00 0.00 4.35
5166 6063 5.328691 TCTTTGTCGTTTTGATTGTGTGTC 58.671 37.500 0.00 0.00 0.00 3.67
5167 6064 5.303747 TCTTTGTCGTTTTGATTGTGTGT 57.696 34.783 0.00 0.00 0.00 3.72
5168 6065 5.275234 CGTTCTTTGTCGTTTTGATTGTGTG 60.275 40.000 0.00 0.00 0.00 3.82
5169 6066 4.791163 CGTTCTTTGTCGTTTTGATTGTGT 59.209 37.500 0.00 0.00 0.00 3.72
5170 6067 5.025190 TCGTTCTTTGTCGTTTTGATTGTG 58.975 37.500 0.00 0.00 0.00 3.33
5171 6068 5.224562 TCGTTCTTTGTCGTTTTGATTGT 57.775 34.783 0.00 0.00 0.00 2.71
5172 6069 6.547493 TTTCGTTCTTTGTCGTTTTGATTG 57.453 33.333 0.00 0.00 0.00 2.67
5173 6070 6.583050 TGTTTTCGTTCTTTGTCGTTTTGATT 59.417 30.769 0.00 0.00 0.00 2.57
5174 6071 6.087522 TGTTTTCGTTCTTTGTCGTTTTGAT 58.912 32.000 0.00 0.00 0.00 2.57
5175 6072 5.450171 TGTTTTCGTTCTTTGTCGTTTTGA 58.550 33.333 0.00 0.00 0.00 2.69
5176 6073 5.732849 TGTTTTCGTTCTTTGTCGTTTTG 57.267 34.783 0.00 0.00 0.00 2.44
5177 6074 5.164129 GCTTGTTTTCGTTCTTTGTCGTTTT 60.164 36.000 0.00 0.00 0.00 2.43
5178 6075 4.322539 GCTTGTTTTCGTTCTTTGTCGTTT 59.677 37.500 0.00 0.00 0.00 3.60
5179 6076 3.849708 GCTTGTTTTCGTTCTTTGTCGTT 59.150 39.130 0.00 0.00 0.00 3.85
5180 6077 3.422655 GCTTGTTTTCGTTCTTTGTCGT 58.577 40.909 0.00 0.00 0.00 4.34
5181 6078 2.458966 CGCTTGTTTTCGTTCTTTGTCG 59.541 45.455 0.00 0.00 0.00 4.35
5182 6079 3.676540 TCGCTTGTTTTCGTTCTTTGTC 58.323 40.909 0.00 0.00 0.00 3.18
5183 6080 3.486875 CCTCGCTTGTTTTCGTTCTTTGT 60.487 43.478 0.00 0.00 0.00 2.83
5184 6081 3.035942 CCTCGCTTGTTTTCGTTCTTTG 58.964 45.455 0.00 0.00 0.00 2.77
5185 6082 2.032924 CCCTCGCTTGTTTTCGTTCTTT 59.967 45.455 0.00 0.00 0.00 2.52
5186 6083 1.602377 CCCTCGCTTGTTTTCGTTCTT 59.398 47.619 0.00 0.00 0.00 2.52
5187 6084 1.202604 TCCCTCGCTTGTTTTCGTTCT 60.203 47.619 0.00 0.00 0.00 3.01
5188 6085 1.070108 GTCCCTCGCTTGTTTTCGTTC 60.070 52.381 0.00 0.00 0.00 3.95
5189 6086 0.942252 GTCCCTCGCTTGTTTTCGTT 59.058 50.000 0.00 0.00 0.00 3.85
5190 6087 0.179067 TGTCCCTCGCTTGTTTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
5191 6088 1.135972 CATGTCCCTCGCTTGTTTTCG 60.136 52.381 0.00 0.00 0.00 3.46
5192 6089 2.151202 TCATGTCCCTCGCTTGTTTTC 58.849 47.619 0.00 0.00 0.00 2.29
5193 6090 2.154462 CTCATGTCCCTCGCTTGTTTT 58.846 47.619 0.00 0.00 0.00 2.43
5194 6091 1.347707 TCTCATGTCCCTCGCTTGTTT 59.652 47.619 0.00 0.00 0.00 2.83
5195 6092 0.976641 TCTCATGTCCCTCGCTTGTT 59.023 50.000 0.00 0.00 0.00 2.83
5196 6093 1.198713 ATCTCATGTCCCTCGCTTGT 58.801 50.000 0.00 0.00 0.00 3.16
5197 6094 2.322355 AATCTCATGTCCCTCGCTTG 57.678 50.000 0.00 0.00 0.00 4.01
5198 6095 3.356529 AAAATCTCATGTCCCTCGCTT 57.643 42.857 0.00 0.00 0.00 4.68
5199 6096 3.742640 GCTAAAATCTCATGTCCCTCGCT 60.743 47.826 0.00 0.00 0.00 4.93
5200 6097 2.545946 GCTAAAATCTCATGTCCCTCGC 59.454 50.000 0.00 0.00 0.00 5.03
5201 6098 2.797156 CGCTAAAATCTCATGTCCCTCG 59.203 50.000 0.00 0.00 0.00 4.63
5202 6099 3.557595 CACGCTAAAATCTCATGTCCCTC 59.442 47.826 0.00 0.00 0.00 4.30
5203 6100 3.535561 CACGCTAAAATCTCATGTCCCT 58.464 45.455 0.00 0.00 0.00 4.20
5204 6101 2.614057 CCACGCTAAAATCTCATGTCCC 59.386 50.000 0.00 0.00 0.00 4.46
5205 6102 3.531538 TCCACGCTAAAATCTCATGTCC 58.468 45.455 0.00 0.00 0.00 4.02
5206 6103 5.545658 TTTCCACGCTAAAATCTCATGTC 57.454 39.130 0.00 0.00 0.00 3.06
5207 6104 5.335661 GGTTTTCCACGCTAAAATCTCATGT 60.336 40.000 0.00 0.00 40.31 3.21
5208 6105 5.095490 GGTTTTCCACGCTAAAATCTCATG 58.905 41.667 0.00 0.00 40.31 3.07
5209 6106 4.157840 GGGTTTTCCACGCTAAAATCTCAT 59.842 41.667 0.00 0.00 42.91 2.90
5210 6107 3.504520 GGGTTTTCCACGCTAAAATCTCA 59.495 43.478 0.00 0.00 42.91 3.27
5211 6108 3.119602 GGGGTTTTCCACGCTAAAATCTC 60.120 47.826 0.00 0.00 42.91 2.75
5212 6109 2.823747 GGGGTTTTCCACGCTAAAATCT 59.176 45.455 0.00 0.00 42.91 2.40
5213 6110 3.226346 GGGGTTTTCCACGCTAAAATC 57.774 47.619 0.00 0.00 42.91 2.17
5222 6119 1.066454 CGTGTTGAAGGGGTTTTCCAC 59.934 52.381 0.00 0.00 45.46 4.02
5223 6120 1.064611 TCGTGTTGAAGGGGTTTTCCA 60.065 47.619 0.00 0.00 42.91 3.53
5224 6121 1.682740 TCGTGTTGAAGGGGTTTTCC 58.317 50.000 0.00 0.00 39.75 3.13
5234 6131 3.090037 TGTTTTTCCCCTTCGTGTTGAA 58.910 40.909 0.00 0.00 34.74 2.69
5235 6132 2.424246 GTGTTTTTCCCCTTCGTGTTGA 59.576 45.455 0.00 0.00 0.00 3.18
5236 6133 2.164624 TGTGTTTTTCCCCTTCGTGTTG 59.835 45.455 0.00 0.00 0.00 3.33
5237 6134 2.425668 CTGTGTTTTTCCCCTTCGTGTT 59.574 45.455 0.00 0.00 0.00 3.32
5238 6135 2.021457 CTGTGTTTTTCCCCTTCGTGT 58.979 47.619 0.00 0.00 0.00 4.49
5239 6136 1.336755 CCTGTGTTTTTCCCCTTCGTG 59.663 52.381 0.00 0.00 0.00 4.35
5240 6137 1.687563 CCTGTGTTTTTCCCCTTCGT 58.312 50.000 0.00 0.00 0.00 3.85
5241 6138 0.313987 GCCTGTGTTTTTCCCCTTCG 59.686 55.000 0.00 0.00 0.00 3.79
5242 6139 0.313987 CGCCTGTGTTTTTCCCCTTC 59.686 55.000 0.00 0.00 0.00 3.46
5243 6140 1.744320 GCGCCTGTGTTTTTCCCCTT 61.744 55.000 0.00 0.00 0.00 3.95
5244 6141 2.200337 GCGCCTGTGTTTTTCCCCT 61.200 57.895 0.00 0.00 0.00 4.79
5245 6142 2.338620 GCGCCTGTGTTTTTCCCC 59.661 61.111 0.00 0.00 0.00 4.81
5246 6143 2.338620 GGCGCCTGTGTTTTTCCC 59.661 61.111 22.15 0.00 0.00 3.97
5247 6144 1.007387 CTGGCGCCTGTGTTTTTCC 60.007 57.895 29.70 0.00 0.00 3.13
5248 6145 1.661509 GCTGGCGCCTGTGTTTTTC 60.662 57.895 30.72 11.53 0.00 2.29
5249 6146 2.417097 GCTGGCGCCTGTGTTTTT 59.583 55.556 30.72 0.00 0.00 1.94
5260 6157 3.273080 GAAGTTTGGCTGGCTGGCG 62.273 63.158 13.03 0.00 45.14 5.69
5261 6158 2.202395 TGAAGTTTGGCTGGCTGGC 61.202 57.895 11.09 11.09 42.18 4.85
5262 6159 0.825010 AGTGAAGTTTGGCTGGCTGG 60.825 55.000 2.00 0.00 0.00 4.85
5263 6160 1.896220 TAGTGAAGTTTGGCTGGCTG 58.104 50.000 2.00 0.00 0.00 4.85
5264 6161 2.887151 ATAGTGAAGTTTGGCTGGCT 57.113 45.000 2.00 0.00 0.00 4.75
5265 6162 4.202050 CCAATATAGTGAAGTTTGGCTGGC 60.202 45.833 0.79 0.00 31.29 4.85
5266 6163 4.339247 CCCAATATAGTGAAGTTTGGCTGG 59.661 45.833 0.79 0.00 36.37 4.85
5267 6164 4.339247 CCCCAATATAGTGAAGTTTGGCTG 59.661 45.833 0.79 0.00 36.37 4.85
5268 6165 4.017499 ACCCCAATATAGTGAAGTTTGGCT 60.017 41.667 0.79 0.00 36.37 4.75
5269 6166 4.278310 ACCCCAATATAGTGAAGTTTGGC 58.722 43.478 0.79 0.00 36.37 4.52
5270 6167 6.062095 CCTACCCCAATATAGTGAAGTTTGG 58.938 44.000 0.79 0.00 37.23 3.28
5271 6168 6.659824 ACCTACCCCAATATAGTGAAGTTTG 58.340 40.000 0.79 0.00 0.00 2.93
5272 6169 6.903340 ACCTACCCCAATATAGTGAAGTTT 57.097 37.500 0.79 0.00 0.00 2.66
5273 6170 6.903340 AACCTACCCCAATATAGTGAAGTT 57.097 37.500 0.79 0.00 0.00 2.66
5274 6171 6.904654 TGTAACCTACCCCAATATAGTGAAGT 59.095 38.462 0.79 1.31 0.00 3.01
5275 6172 7.369551 TGTAACCTACCCCAATATAGTGAAG 57.630 40.000 0.79 0.00 0.00 3.02
5276 6173 7.752518 TTGTAACCTACCCCAATATAGTGAA 57.247 36.000 0.79 0.00 0.00 3.18
5277 6174 7.567458 GTTTGTAACCTACCCCAATATAGTGA 58.433 38.462 0.79 0.00 0.00 3.41
5278 6175 6.480981 CGTTTGTAACCTACCCCAATATAGTG 59.519 42.308 0.00 0.00 0.00 2.74
5279 6176 6.156775 ACGTTTGTAACCTACCCCAATATAGT 59.843 38.462 0.00 0.00 0.00 2.12
5280 6177 6.585416 ACGTTTGTAACCTACCCCAATATAG 58.415 40.000 0.00 0.00 0.00 1.31
5281 6178 6.558488 ACGTTTGTAACCTACCCCAATATA 57.442 37.500 0.00 0.00 0.00 0.86
5282 6179 5.430886 GACGTTTGTAACCTACCCCAATAT 58.569 41.667 0.00 0.00 0.00 1.28
5283 6180 4.620332 CGACGTTTGTAACCTACCCCAATA 60.620 45.833 0.00 0.00 0.00 1.90
5284 6181 3.678289 GACGTTTGTAACCTACCCCAAT 58.322 45.455 0.00 0.00 0.00 3.16
5285 6182 2.547642 CGACGTTTGTAACCTACCCCAA 60.548 50.000 0.00 0.00 0.00 4.12
5286 6183 1.000731 CGACGTTTGTAACCTACCCCA 59.999 52.381 0.00 0.00 0.00 4.96
5287 6184 1.672737 CCGACGTTTGTAACCTACCCC 60.673 57.143 0.00 0.00 0.00 4.95
5288 6185 1.672737 CCCGACGTTTGTAACCTACCC 60.673 57.143 0.00 0.00 0.00 3.69
5289 6186 1.672737 CCCCGACGTTTGTAACCTACC 60.673 57.143 0.00 0.00 0.00 3.18
5290 6187 1.272212 TCCCCGACGTTTGTAACCTAC 59.728 52.381 0.00 0.00 0.00 3.18
5291 6188 1.626686 TCCCCGACGTTTGTAACCTA 58.373 50.000 0.00 0.00 0.00 3.08
5292 6189 0.978907 ATCCCCGACGTTTGTAACCT 59.021 50.000 0.00 0.00 0.00 3.50
5293 6190 1.812235 AATCCCCGACGTTTGTAACC 58.188 50.000 0.00 0.00 0.00 2.85
5294 6191 2.666344 GCAAATCCCCGACGTTTGTAAC 60.666 50.000 9.51 0.00 35.75 2.50
5295 6192 1.536331 GCAAATCCCCGACGTTTGTAA 59.464 47.619 9.51 0.00 35.75 2.41
5296 6193 1.158434 GCAAATCCCCGACGTTTGTA 58.842 50.000 9.51 0.00 35.75 2.41
5297 6194 0.820074 TGCAAATCCCCGACGTTTGT 60.820 50.000 9.51 0.00 35.75 2.83
5298 6195 0.312416 TTGCAAATCCCCGACGTTTG 59.688 50.000 0.00 4.74 36.26 2.93
5299 6196 0.312729 GTTGCAAATCCCCGACGTTT 59.687 50.000 0.00 0.00 0.00 3.60
5300 6197 0.536460 AGTTGCAAATCCCCGACGTT 60.536 50.000 0.00 0.00 0.00 3.99
5301 6198 0.322322 TAGTTGCAAATCCCCGACGT 59.678 50.000 1.02 0.00 0.00 4.34
5302 6199 1.444836 TTAGTTGCAAATCCCCGACG 58.555 50.000 1.02 0.00 0.00 5.12
5303 6200 3.013921 TGATTAGTTGCAAATCCCCGAC 58.986 45.455 1.02 0.00 33.28 4.79
5304 6201 3.358111 TGATTAGTTGCAAATCCCCGA 57.642 42.857 1.02 0.00 33.28 5.14
5305 6202 3.443681 AGTTGATTAGTTGCAAATCCCCG 59.556 43.478 1.02 0.00 33.28 5.73
5306 6203 6.239036 GGATAGTTGATTAGTTGCAAATCCCC 60.239 42.308 1.02 0.00 33.28 4.81
5307 6204 6.547510 AGGATAGTTGATTAGTTGCAAATCCC 59.452 38.462 1.02 0.00 34.31 3.85
5308 6205 7.067494 ACAGGATAGTTGATTAGTTGCAAATCC 59.933 37.037 1.02 7.01 34.13 3.01
5309 6206 7.912250 CACAGGATAGTTGATTAGTTGCAAATC 59.088 37.037 1.02 2.32 34.55 2.17
5310 6207 7.629222 GCACAGGATAGTTGATTAGTTGCAAAT 60.629 37.037 4.23 4.23 0.00 2.32
5311 6208 6.349280 GCACAGGATAGTTGATTAGTTGCAAA 60.349 38.462 0.00 0.00 0.00 3.68
5312 6209 5.123820 GCACAGGATAGTTGATTAGTTGCAA 59.876 40.000 0.00 0.00 0.00 4.08
5313 6210 4.635765 GCACAGGATAGTTGATTAGTTGCA 59.364 41.667 0.00 0.00 0.00 4.08
5314 6211 4.635765 TGCACAGGATAGTTGATTAGTTGC 59.364 41.667 0.00 0.00 0.00 4.17
5315 6212 5.220739 GCTGCACAGGATAGTTGATTAGTTG 60.221 44.000 0.00 0.00 0.00 3.16
5316 6213 4.878397 GCTGCACAGGATAGTTGATTAGTT 59.122 41.667 0.00 0.00 0.00 2.24
5317 6214 4.446371 GCTGCACAGGATAGTTGATTAGT 58.554 43.478 0.00 0.00 0.00 2.24
5318 6215 3.492383 CGCTGCACAGGATAGTTGATTAG 59.508 47.826 0.00 0.00 0.00 1.73
5319 6216 3.457234 CGCTGCACAGGATAGTTGATTA 58.543 45.455 0.00 0.00 0.00 1.75
5320 6217 2.283298 CGCTGCACAGGATAGTTGATT 58.717 47.619 0.00 0.00 0.00 2.57
5321 6218 1.473965 CCGCTGCACAGGATAGTTGAT 60.474 52.381 0.00 0.00 0.00 2.57
5322 6219 0.108186 CCGCTGCACAGGATAGTTGA 60.108 55.000 0.00 0.00 0.00 3.18
5323 6220 1.709147 GCCGCTGCACAGGATAGTTG 61.709 60.000 6.87 0.00 37.47 3.16
5324 6221 1.450312 GCCGCTGCACAGGATAGTT 60.450 57.895 6.87 0.00 37.47 2.24
5325 6222 1.903877 AAGCCGCTGCACAGGATAGT 61.904 55.000 2.05 0.00 41.13 2.12
5326 6223 0.104855 TAAGCCGCTGCACAGGATAG 59.895 55.000 2.05 0.00 41.13 2.08
5327 6224 0.179084 GTAAGCCGCTGCACAGGATA 60.179 55.000 2.05 0.00 41.13 2.59
5328 6225 1.450312 GTAAGCCGCTGCACAGGAT 60.450 57.895 2.05 0.00 41.13 3.24
5329 6226 2.047274 GTAAGCCGCTGCACAGGA 60.047 61.111 2.05 0.00 41.13 3.86
5330 6227 1.915614 CTTGTAAGCCGCTGCACAGG 61.916 60.000 2.05 0.00 41.13 4.00
5331 6228 0.950555 TCTTGTAAGCCGCTGCACAG 60.951 55.000 2.05 0.00 41.13 3.66
5332 6229 0.950555 CTCTTGTAAGCCGCTGCACA 60.951 55.000 2.05 0.00 41.13 4.57
5333 6230 1.639298 CCTCTTGTAAGCCGCTGCAC 61.639 60.000 2.05 0.00 41.13 4.57
5334 6231 1.375908 CCTCTTGTAAGCCGCTGCA 60.376 57.895 2.05 0.00 41.13 4.41
5335 6232 0.108329 TACCTCTTGTAAGCCGCTGC 60.108 55.000 0.00 0.00 37.95 5.25
5336 6233 2.604046 ATACCTCTTGTAAGCCGCTG 57.396 50.000 0.00 0.00 31.94 5.18
5337 6234 7.177921 TGTTATATATACCTCTTGTAAGCCGCT 59.822 37.037 0.00 0.00 31.94 5.52
5338 6235 7.275123 GTGTTATATATACCTCTTGTAAGCCGC 59.725 40.741 0.00 0.00 31.94 6.53
5339 6236 8.301720 TGTGTTATATATACCTCTTGTAAGCCG 58.698 37.037 0.00 0.00 31.94 5.52
5345 6242 9.982651 GTCACATGTGTTATATATACCTCTTGT 57.017 33.333 24.63 5.57 0.00 3.16
5346 6243 9.424319 GGTCACATGTGTTATATATACCTCTTG 57.576 37.037 24.63 0.00 0.00 3.02
5347 6244 9.381038 AGGTCACATGTGTTATATATACCTCTT 57.619 33.333 24.63 4.89 0.00 2.85
5348 6245 8.958060 AGGTCACATGTGTTATATATACCTCT 57.042 34.615 24.63 5.54 0.00 3.69
5350 6247 9.256228 CCTAGGTCACATGTGTTATATATACCT 57.744 37.037 25.79 25.79 37.40 3.08
5351 6248 9.032624 ACCTAGGTCACATGTGTTATATATACC 57.967 37.037 24.63 20.40 0.00 2.73
5358 6255 8.989131 AGTATTAACCTAGGTCACATGTGTTAT 58.011 33.333 24.63 13.82 0.00 1.89
5359 6256 8.255206 CAGTATTAACCTAGGTCACATGTGTTA 58.745 37.037 24.63 11.52 0.00 2.41
5360 6257 7.038587 TCAGTATTAACCTAGGTCACATGTGTT 60.039 37.037 24.63 12.49 0.00 3.32
5361 6258 6.439375 TCAGTATTAACCTAGGTCACATGTGT 59.561 38.462 24.63 9.13 0.00 3.72
5362 6259 6.873997 TCAGTATTAACCTAGGTCACATGTG 58.126 40.000 20.18 20.18 0.00 3.21
5363 6260 7.676683 ATCAGTATTAACCTAGGTCACATGT 57.323 36.000 16.64 0.00 0.00 3.21
5364 6261 7.382488 CGAATCAGTATTAACCTAGGTCACATG 59.618 40.741 16.64 9.84 0.00 3.21
5365 6262 7.069578 ACGAATCAGTATTAACCTAGGTCACAT 59.930 37.037 16.64 10.05 0.00 3.21
5366 6263 6.379133 ACGAATCAGTATTAACCTAGGTCACA 59.621 38.462 16.64 2.15 0.00 3.58
5367 6264 6.803642 ACGAATCAGTATTAACCTAGGTCAC 58.196 40.000 16.64 10.96 0.00 3.67
5368 6265 7.013655 GGTACGAATCAGTATTAACCTAGGTCA 59.986 40.741 16.64 5.45 0.00 4.02
5369 6266 7.366513 GGTACGAATCAGTATTAACCTAGGTC 58.633 42.308 16.64 1.59 0.00 3.85
5370 6267 7.282332 GGTACGAATCAGTATTAACCTAGGT 57.718 40.000 9.21 9.21 0.00 3.08
5428 6325 4.135153 CTCGACAGGGACGCCTGG 62.135 72.222 12.92 0.00 41.67 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.