Multiple sequence alignment - TraesCS1A01G112900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G112900 chr1A 100.000 3195 0 0 1 3195 115891171 115887977 0 5901
1 TraesCS1A01G112900 chr1A 96.046 1669 53 7 598 2256 94598363 94596698 0 2704
2 TraesCS1A01G112900 chr1A 95.743 1668 59 8 598 2256 94708669 94710333 0 2676
3 TraesCS1A01G112900 chr1A 97.162 599 17 0 1 599 381983309 381983907 0 1013
4 TraesCS1A01G112900 chr1A 97.162 599 14 3 1 598 99275110 99275706 0 1009
5 TraesCS1A01G112900 chr1A 96.990 598 18 0 1 598 105866858 105866261 0 1005
6 TraesCS1A01G112900 chr1A 96.990 598 18 0 1 598 458368033 458368630 0 1005
7 TraesCS1A01G112900 chr1A 92.807 570 35 4 2630 3195 278509245 278509812 0 821
8 TraesCS1A01G112900 chr3A 95.664 1845 69 7 598 2433 51886620 51884778 0 2953
9 TraesCS1A01G112900 chr3A 96.376 607 21 1 1 607 630712359 630711754 0 998
10 TraesCS1A01G112900 chr5A 96.396 1665 51 5 598 2255 667732083 667730421 0 2734
11 TraesCS1A01G112900 chr5A 97.185 604 15 2 1 604 327193562 327192961 0 1020
12 TraesCS1A01G112900 chr5A 97.157 598 17 0 1 598 10244145 10243548 0 1011
13 TraesCS1A01G112900 chr7D 96.905 1583 42 6 598 2174 381881412 381879831 0 2645
14 TraesCS1A01G112900 chr7D 93.299 582 30 7 2617 3195 382036788 382037363 0 850
15 TraesCS1A01G112900 chr7D 93.127 582 33 5 2617 3195 203566846 203566269 0 846
16 TraesCS1A01G112900 chr7D 92.955 582 33 6 2617 3195 579008575 579007999 0 841
17 TraesCS1A01G112900 chr7D 92.642 530 29 6 2198 2721 382090419 382090944 0 754
18 TraesCS1A01G112900 chr7D 92.264 530 31 6 2198 2721 626710575 626710050 0 743
19 TraesCS1A01G112900 chr7D 91.794 524 31 9 2198 2717 307163536 307164051 0 719
20 TraesCS1A01G112900 chr5B 96.225 1616 50 9 598 2207 127797675 127796065 0 2636
21 TraesCS1A01G112900 chrUn 96.719 1585 43 7 598 2174 223716144 223717727 0 2630
22 TraesCS1A01G112900 chrUn 93.299 582 30 7 2617 3195 267898988 267898413 0 850
23 TraesCS1A01G112900 chrUn 92.467 531 29 7 2198 2721 369464892 369464366 0 749
24 TraesCS1A01G112900 chr2B 95.926 1620 54 7 598 2207 760924287 760925904 0 2615
25 TraesCS1A01G112900 chr4A 94.554 1671 78 7 598 2256 295169128 295167459 0 2569
26 TraesCS1A01G112900 chr7A 97.492 598 15 0 1 598 657862457 657863054 0 1022
27 TraesCS1A01G112900 chr7A 97.157 598 17 0 1 598 702416182 702415585 0 1011
28 TraesCS1A01G112900 chr4D 93.299 582 32 5 2617 3195 123671343 123671920 0 852
29 TraesCS1A01G112900 chr4D 92.075 530 30 8 2198 2721 123402138 123402661 0 736
30 TraesCS1A01G112900 chr4D 92.366 524 29 7 2198 2715 134963633 134964151 0 736
31 TraesCS1A01G112900 chr2D 92.784 582 33 7 2617 3195 200905282 200904707 0 833
32 TraesCS1A01G112900 chr6D 92.612 582 32 8 2617 3195 102355988 102356561 0 826
33 TraesCS1A01G112900 chr3D 92.427 581 36 7 2617 3195 154778134 154777560 0 822
34 TraesCS1A01G112900 chr3D 91.619 525 31 9 2198 2717 602859561 602859045 0 713
35 TraesCS1A01G112900 chr1D 92.642 530 28 7 2198 2721 212444097 212443573 0 752
36 TraesCS1A01G112900 chr1D 92.000 525 30 8 2198 2717 275785969 275785452 0 726


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G112900 chr1A 115887977 115891171 3194 True 5901 5901 100.000 1 3195 1 chr1A.!!$R3 3194
1 TraesCS1A01G112900 chr1A 94596698 94598363 1665 True 2704 2704 96.046 598 2256 1 chr1A.!!$R1 1658
2 TraesCS1A01G112900 chr1A 94708669 94710333 1664 False 2676 2676 95.743 598 2256 1 chr1A.!!$F1 1658
3 TraesCS1A01G112900 chr1A 381983309 381983907 598 False 1013 1013 97.162 1 599 1 chr1A.!!$F4 598
4 TraesCS1A01G112900 chr1A 99275110 99275706 596 False 1009 1009 97.162 1 598 1 chr1A.!!$F2 597
5 TraesCS1A01G112900 chr1A 105866261 105866858 597 True 1005 1005 96.990 1 598 1 chr1A.!!$R2 597
6 TraesCS1A01G112900 chr1A 458368033 458368630 597 False 1005 1005 96.990 1 598 1 chr1A.!!$F5 597
7 TraesCS1A01G112900 chr1A 278509245 278509812 567 False 821 821 92.807 2630 3195 1 chr1A.!!$F3 565
8 TraesCS1A01G112900 chr3A 51884778 51886620 1842 True 2953 2953 95.664 598 2433 1 chr3A.!!$R1 1835
9 TraesCS1A01G112900 chr3A 630711754 630712359 605 True 998 998 96.376 1 607 1 chr3A.!!$R2 606
10 TraesCS1A01G112900 chr5A 667730421 667732083 1662 True 2734 2734 96.396 598 2255 1 chr5A.!!$R3 1657
11 TraesCS1A01G112900 chr5A 327192961 327193562 601 True 1020 1020 97.185 1 604 1 chr5A.!!$R2 603
12 TraesCS1A01G112900 chr5A 10243548 10244145 597 True 1011 1011 97.157 1 598 1 chr5A.!!$R1 597
13 TraesCS1A01G112900 chr7D 381879831 381881412 1581 True 2645 2645 96.905 598 2174 1 chr7D.!!$R2 1576
14 TraesCS1A01G112900 chr7D 382036788 382037363 575 False 850 850 93.299 2617 3195 1 chr7D.!!$F2 578
15 TraesCS1A01G112900 chr7D 203566269 203566846 577 True 846 846 93.127 2617 3195 1 chr7D.!!$R1 578
16 TraesCS1A01G112900 chr7D 579007999 579008575 576 True 841 841 92.955 2617 3195 1 chr7D.!!$R3 578
17 TraesCS1A01G112900 chr7D 382090419 382090944 525 False 754 754 92.642 2198 2721 1 chr7D.!!$F3 523
18 TraesCS1A01G112900 chr7D 626710050 626710575 525 True 743 743 92.264 2198 2721 1 chr7D.!!$R4 523
19 TraesCS1A01G112900 chr7D 307163536 307164051 515 False 719 719 91.794 2198 2717 1 chr7D.!!$F1 519
20 TraesCS1A01G112900 chr5B 127796065 127797675 1610 True 2636 2636 96.225 598 2207 1 chr5B.!!$R1 1609
21 TraesCS1A01G112900 chrUn 223716144 223717727 1583 False 2630 2630 96.719 598 2174 1 chrUn.!!$F1 1576
22 TraesCS1A01G112900 chrUn 267898413 267898988 575 True 850 850 93.299 2617 3195 1 chrUn.!!$R1 578
23 TraesCS1A01G112900 chrUn 369464366 369464892 526 True 749 749 92.467 2198 2721 1 chrUn.!!$R2 523
24 TraesCS1A01G112900 chr2B 760924287 760925904 1617 False 2615 2615 95.926 598 2207 1 chr2B.!!$F1 1609
25 TraesCS1A01G112900 chr4A 295167459 295169128 1669 True 2569 2569 94.554 598 2256 1 chr4A.!!$R1 1658
26 TraesCS1A01G112900 chr7A 657862457 657863054 597 False 1022 1022 97.492 1 598 1 chr7A.!!$F1 597
27 TraesCS1A01G112900 chr7A 702415585 702416182 597 True 1011 1011 97.157 1 598 1 chr7A.!!$R1 597
28 TraesCS1A01G112900 chr4D 123671343 123671920 577 False 852 852 93.299 2617 3195 1 chr4D.!!$F2 578
29 TraesCS1A01G112900 chr4D 123402138 123402661 523 False 736 736 92.075 2198 2721 1 chr4D.!!$F1 523
30 TraesCS1A01G112900 chr4D 134963633 134964151 518 False 736 736 92.366 2198 2715 1 chr4D.!!$F3 517
31 TraesCS1A01G112900 chr2D 200904707 200905282 575 True 833 833 92.784 2617 3195 1 chr2D.!!$R1 578
32 TraesCS1A01G112900 chr6D 102355988 102356561 573 False 826 826 92.612 2617 3195 1 chr6D.!!$F1 578
33 TraesCS1A01G112900 chr3D 154777560 154778134 574 True 822 822 92.427 2617 3195 1 chr3D.!!$R1 578
34 TraesCS1A01G112900 chr3D 602859045 602859561 516 True 713 713 91.619 2198 2717 1 chr3D.!!$R2 519
35 TraesCS1A01G112900 chr1D 212443573 212444097 524 True 752 752 92.642 2198 2721 1 chr1D.!!$R1 523
36 TraesCS1A01G112900 chr1D 275785452 275785969 517 True 726 726 92.000 2198 2717 1 chr1D.!!$R2 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 860 0.179056 CCGACAAATCCGTAGCCCAT 60.179 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2476 2498 0.163146 GTTTTCTTCCTTCGCCGTCG 59.837 55.0 0.0 0.0 0.0 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
465 466 5.990996 AGGATTTATTTGTTTTGTGCAGGTG 59.009 36.000 0.00 0.00 0.00 4.00
535 536 8.391075 CTCAAAAACTGAGGGAAATACTTACA 57.609 34.615 0.00 0.00 46.89 2.41
591 592 0.463654 ACCAACGCAGTGCTCAAGAA 60.464 50.000 14.33 0.00 45.00 2.52
666 667 4.625742 TGAGATGGAAATCGACGTTCTTTC 59.374 41.667 9.79 5.49 0.00 2.62
692 693 1.810030 GCTAGGTAGTTTGCGCGCT 60.810 57.895 33.29 14.83 0.00 5.92
786 787 1.883926 GAAGCCTTAAGAAACCGGCAA 59.116 47.619 0.00 0.00 44.85 4.52
794 795 1.398692 AGAAACCGGCAAAGAAAGCA 58.601 45.000 0.00 0.00 0.00 3.91
797 798 1.109323 AACCGGCAAAGAAAGCAGCT 61.109 50.000 0.00 0.00 0.00 4.24
802 805 2.130395 GGCAAAGAAAGCAGCTGTTTC 58.870 47.619 23.15 23.15 34.64 2.78
809 814 2.781945 AAGCAGCTGTTTCTTTTCGG 57.218 45.000 16.64 0.00 0.00 4.30
855 860 0.179056 CCGACAAATCCGTAGCCCAT 60.179 55.000 0.00 0.00 0.00 4.00
860 865 1.942657 CAAATCCGTAGCCCATGTGAG 59.057 52.381 0.00 0.00 0.00 3.51
903 908 6.097839 CCAAAATGGGATGAATCTTCTCATGT 59.902 38.462 11.59 4.28 36.15 3.21
978 983 3.988186 GGGTAAATAAGGGGGAAGAGGAT 59.012 47.826 0.00 0.00 0.00 3.24
1019 1024 5.690865 AGAAATGACTACAAGGAACCAACA 58.309 37.500 0.00 0.00 0.00 3.33
1034 1039 7.164803 AGGAACCAACAATTCTCTCTTCTTAG 58.835 38.462 0.00 0.00 0.00 2.18
1146 1151 7.759489 AGCAGGTATTTGTTTAGTCATTCAA 57.241 32.000 0.00 0.00 0.00 2.69
1365 1371 2.105821 AGGGAATTTGTTCGGTGTCTCA 59.894 45.455 0.00 0.00 0.00 3.27
1434 1440 0.772124 ACCACCTTGGGGTCAGATGT 60.772 55.000 0.00 0.00 45.41 3.06
1591 1598 8.500238 CATTTACTCCCCCTTATTTTAGTAGGT 58.500 37.037 0.00 0.00 0.00 3.08
1800 1812 6.634805 ACAATGATATACCTGCTAATCCGAG 58.365 40.000 0.00 0.00 0.00 4.63
1808 1820 2.742116 GCTAATCCGAGGCCCACCA 61.742 63.158 0.00 0.00 39.06 4.17
1872 1884 4.130118 GCCATTCTTCACAGTATACCTGG 58.870 47.826 0.00 0.00 46.06 4.45
2018 2032 3.487544 GCTTTTGGCGGATTGCTTACTAG 60.488 47.826 0.00 0.00 45.43 2.57
2082 2096 7.335924 TGTTACTATTGGACAAATTCCTACTGC 59.664 37.037 0.00 0.00 46.10 4.40
2086 2100 3.686016 TGGACAAATTCCTACTGCCTTC 58.314 45.455 0.00 0.00 46.10 3.46
2249 2268 4.899502 GCCATAGCCATAGAAGAAGCTTA 58.100 43.478 0.00 0.00 36.79 3.09
2260 2279 5.770685 AGAAGAAGCTTATCCTCCAAAGT 57.229 39.130 0.00 0.00 0.00 2.66
2364 2385 5.424757 TGGTACCAAATCTGGATAAACTCG 58.575 41.667 13.60 0.00 46.92 4.18
2368 2389 6.894339 ACCAAATCTGGATAAACTCGTTTT 57.106 33.333 0.00 0.00 46.92 2.43
2439 2461 3.230355 GACGCGAACATGTTTAATTGCA 58.770 40.909 15.93 0.00 0.00 4.08
2475 2497 8.937634 ATTCCAAAATATGATTCAAGAAGCAC 57.062 30.769 2.55 0.00 39.70 4.40
2476 2498 6.866480 TCCAAAATATGATTCAAGAAGCACC 58.134 36.000 2.55 0.00 39.70 5.01
2478 2500 6.404623 CCAAAATATGATTCAAGAAGCACCGA 60.405 38.462 2.55 0.00 39.70 4.69
2480 2502 1.428448 TGATTCAAGAAGCACCGACG 58.572 50.000 0.00 0.00 31.05 5.12
2481 2503 0.721718 GATTCAAGAAGCACCGACGG 59.278 55.000 13.61 13.61 0.00 4.79
2482 2504 1.298859 ATTCAAGAAGCACCGACGGC 61.299 55.000 15.39 0.00 0.00 5.68
2483 2505 3.777925 CAAGAAGCACCGACGGCG 61.778 66.667 15.39 1.94 36.08 6.46
2484 2506 3.986006 AAGAAGCACCGACGGCGA 61.986 61.111 15.16 0.00 40.82 5.54
2542 2564 3.439129 TGTGAAGATCGTCGTATGACTGT 59.561 43.478 13.11 1.48 43.21 3.55
2564 2586 5.726980 TGGAGGAAAGTCCAAAAATGATG 57.273 39.130 0.00 0.00 44.01 3.07
2691 2721 2.325484 GTTGGTTTGGTGGGGAAAGAT 58.675 47.619 0.00 0.00 0.00 2.40
2762 2794 3.530910 AACTCAACGGCTCCCACGG 62.531 63.158 0.00 0.00 35.23 4.94
2796 2828 3.630769 AGCGAATTCATACGAGGACTACA 59.369 43.478 6.22 0.00 0.00 2.74
2836 2868 4.056125 CAGGAGGTCGAGCGCACA 62.056 66.667 19.80 0.00 0.00 4.57
2850 2882 1.504359 CGCACACTTTCCTCGGTTTA 58.496 50.000 0.00 0.00 0.00 2.01
2882 2914 5.246429 GGGACAAAGATAGATCCTCGGTAAT 59.754 44.000 0.00 0.00 0.00 1.89
2914 2946 5.482006 GGATAGCCTTGCTTTTGAACATTT 58.518 37.500 0.00 0.00 40.44 2.32
3069 3101 5.008118 GGCGAGTAACTACTACGAAAGGTAT 59.992 44.000 10.76 0.00 36.50 2.73
3076 3108 9.591792 GTAACTACTACGAAAGGTATGGAAAAT 57.408 33.333 0.00 0.00 0.00 1.82
3094 3126 4.953940 AAATAGGAAAGGCAAAGCACAA 57.046 36.364 0.00 0.00 0.00 3.33
3103 3135 2.363359 AGGCAAAGCACAAGAAAGAAGG 59.637 45.455 0.00 0.00 0.00 3.46
3135 3167 6.834168 AATAATGTCATCCTTGTTTCCGTT 57.166 33.333 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
425 426 0.320858 TCCTTGCAACCAACGCGATA 60.321 50.000 15.93 0.00 0.00 2.92
426 427 0.960364 ATCCTTGCAACCAACGCGAT 60.960 50.000 15.93 0.00 0.00 4.58
535 536 2.240667 AGGGATGATGCAGCAAAGTAGT 59.759 45.455 9.54 0.00 0.00 2.73
591 592 6.595682 AGCAATATTGTTGTCCTATGCTACT 58.404 36.000 16.61 0.00 0.00 2.57
666 667 2.418976 GCAAACTACCTAGCCCTTTTCG 59.581 50.000 0.00 0.00 0.00 3.46
692 693 4.405358 ACCTTTCATGAAGAAGTTTTGCCA 59.595 37.500 8.41 0.00 37.57 4.92
786 787 4.354587 CGAAAAGAAACAGCTGCTTTCTT 58.645 39.130 30.46 30.46 45.68 2.52
794 795 2.814336 GGTCATCCGAAAAGAAACAGCT 59.186 45.455 0.00 0.00 0.00 4.24
797 798 7.519032 AAATAAGGTCATCCGAAAAGAAACA 57.481 32.000 0.00 0.00 39.05 2.83
802 805 5.810587 TCTCGAAATAAGGTCATCCGAAAAG 59.189 40.000 0.00 0.00 39.05 2.27
809 814 7.778470 AGTTGATTCTCGAAATAAGGTCATC 57.222 36.000 0.00 0.00 0.00 2.92
855 860 3.695606 GGGAGGCAGCGACTCACA 61.696 66.667 12.43 0.00 41.55 3.58
860 865 3.071206 TGAGAGGGAGGCAGCGAC 61.071 66.667 0.00 0.00 0.00 5.19
903 908 4.202010 GCGCCCTGAATAATCAAAAAGCTA 60.202 41.667 0.00 0.00 34.49 3.32
958 963 6.432581 ACAAATCCTCTTCCCCCTTATTTAC 58.567 40.000 0.00 0.00 0.00 2.01
1007 1012 5.767168 AGAAGAGAGAATTGTTGGTTCCTTG 59.233 40.000 0.00 0.00 0.00 3.61
1034 1039 7.924947 GGTTAAGTGTGGAGTATATAGGTTGTC 59.075 40.741 0.00 0.00 0.00 3.18
1078 1083 1.906574 ACTAAGATTGCTCGGGGTTGA 59.093 47.619 0.00 0.00 0.00 3.18
1311 1317 4.937201 AACTCGCATGATATAGACCACA 57.063 40.909 0.00 0.00 0.00 4.17
1557 1564 3.747852 AGGGGGAGTAAATGATGGAGAA 58.252 45.455 0.00 0.00 0.00 2.87
1591 1598 2.775911 CCAGATGAAGAAGACTGGCA 57.224 50.000 0.00 0.00 42.30 4.92
1781 1793 3.181474 GGCCTCGGATTAGCAGGTATATC 60.181 52.174 0.00 0.00 0.00 1.63
1813 1825 1.691196 ACCATTCCGGCACAATATGG 58.309 50.000 0.00 5.35 41.18 2.74
1872 1884 2.399356 GCTACACCTCCCGCTTTGC 61.399 63.158 0.00 0.00 0.00 3.68
2018 2032 3.195661 GTTGACATCCGATCCAACCTAC 58.804 50.000 10.16 0.00 34.46 3.18
2078 2092 4.429854 AGAACAAGAAGAAGAAGGCAGT 57.570 40.909 0.00 0.00 0.00 4.40
2082 2096 4.339247 TGGCAAAGAACAAGAAGAAGAAGG 59.661 41.667 0.00 0.00 0.00 3.46
2086 2100 5.853282 CGTTATGGCAAAGAACAAGAAGAAG 59.147 40.000 0.00 0.00 0.00 2.85
2260 2279 1.001631 TGAGATTCCGCTCCCTCCA 59.998 57.895 0.00 0.00 33.95 3.86
2381 2402 7.148171 CGAAAAGCCAGAAATAGAATTTCCTCT 60.148 37.037 8.40 2.24 0.00 3.69
2420 2441 2.341168 GGTGCAATTAAACATGTTCGCG 59.659 45.455 12.39 0.00 0.00 5.87
2451 2473 7.322664 GGTGCTTCTTGAATCATATTTTGGAA 58.677 34.615 0.00 0.00 0.00 3.53
2466 2488 3.777925 CGCCGTCGGTGCTTCTTG 61.778 66.667 12.67 0.00 0.00 3.02
2475 2497 0.947180 TTTTCTTCCTTCGCCGTCGG 60.947 55.000 6.99 6.99 36.13 4.79
2476 2498 0.163146 GTTTTCTTCCTTCGCCGTCG 59.837 55.000 0.00 0.00 0.00 5.12
2478 2500 1.202604 TCTGTTTTCTTCCTTCGCCGT 60.203 47.619 0.00 0.00 0.00 5.68
2480 2502 3.066203 TGTTTCTGTTTTCTTCCTTCGCC 59.934 43.478 0.00 0.00 0.00 5.54
2481 2503 4.287238 TGTTTCTGTTTTCTTCCTTCGC 57.713 40.909 0.00 0.00 0.00 4.70
2482 2504 4.735338 GCTTGTTTCTGTTTTCTTCCTTCG 59.265 41.667 0.00 0.00 0.00 3.79
2483 2505 5.043903 GGCTTGTTTCTGTTTTCTTCCTTC 58.956 41.667 0.00 0.00 0.00 3.46
2484 2506 4.711846 AGGCTTGTTTCTGTTTTCTTCCTT 59.288 37.500 0.00 0.00 0.00 3.36
2542 2564 4.527816 CCATCATTTTTGGACTTTCCTCCA 59.472 41.667 0.00 0.00 38.66 3.86
2559 2581 7.201974 CCATAGGAAAGAAAATGCTTCCATCAT 60.202 37.037 3.12 0.00 0.00 2.45
2562 2584 5.364735 CCCATAGGAAAGAAAATGCTTCCAT 59.635 40.000 3.12 0.00 33.47 3.41
2564 2586 4.956075 TCCCATAGGAAAGAAAATGCTTCC 59.044 41.667 0.00 0.00 40.08 3.46
2691 2721 3.582647 TGAAAGAAGCCCTCATACACTCA 59.417 43.478 0.00 0.00 0.00 3.41
2762 2794 1.452399 GAATTCGCTATCGCTCCGAAC 59.548 52.381 0.00 0.00 42.76 3.95
2796 2828 5.105392 TGGAAGGAATGCAATTATTCGCTTT 60.105 36.000 0.00 0.00 36.07 3.51
2836 2868 5.246307 CCTTGATTCTAAACCGAGGAAAGT 58.754 41.667 0.00 0.00 34.13 2.66
2850 2882 6.619023 AGGATCTATCTTTGTCCCTTGATTCT 59.381 38.462 0.00 0.00 0.00 2.40
2935 2967 4.571984 TCCTACTGATTTCGATTGCACATG 59.428 41.667 0.00 0.00 0.00 3.21
3069 3101 3.900601 TGCTTTGCCTTTCCTATTTTCCA 59.099 39.130 0.00 0.00 0.00 3.53
3076 3108 3.222173 TCTTGTGCTTTGCCTTTCCTA 57.778 42.857 0.00 0.00 0.00 2.94
3077 3109 2.071778 TCTTGTGCTTTGCCTTTCCT 57.928 45.000 0.00 0.00 0.00 3.36
3111 3143 7.066525 GGAACGGAAACAAGGATGACATTATTA 59.933 37.037 0.00 0.00 0.00 0.98
3132 3164 3.057019 TCGACAAGTTGAATCTGGAACG 58.943 45.455 10.54 1.81 0.00 3.95
3135 3167 2.612972 GCCTCGACAAGTTGAATCTGGA 60.613 50.000 10.54 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.