Multiple sequence alignment - TraesCS1A01G112300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G112300 chr1A 100.000 2861 0 0 1 2861 113881579 113884439 0.000000e+00 5284
1 TraesCS1A01G112300 chr1A 90.561 731 29 14 2101 2792 485329625 485330354 0.000000e+00 931
2 TraesCS1A01G112300 chr3A 97.707 2181 24 5 638 2792 457924767 457926947 0.000000e+00 3727
3 TraesCS1A01G112300 chr3A 97.811 1599 28 2 638 2236 11577167 11578758 0.000000e+00 2752
4 TraesCS1A01G112300 chr3A 93.634 754 26 13 2040 2792 11578627 11579359 0.000000e+00 1107
5 TraesCS1A01G112300 chr7A 97.518 2176 33 2 638 2792 345261323 345263498 0.000000e+00 3699
6 TraesCS1A01G112300 chr7A 93.902 82 3 2 2781 2861 345265783 345265863 3.870000e-24 122
7 TraesCS1A01G112300 chr7A 93.902 82 3 2 2781 2861 705286026 705286106 3.870000e-24 122
8 TraesCS1A01G112300 chr2B 97.472 2176 34 2 638 2792 571946246 571948421 0.000000e+00 3694
9 TraesCS1A01G112300 chr2B 93.902 82 3 2 2781 2861 629113427 629113507 3.870000e-24 122
10 TraesCS1A01G112300 chr1B 97.472 2176 32 4 638 2792 322392657 322394830 0.000000e+00 3692
11 TraesCS1A01G112300 chr1B 86.523 512 36 14 124 621 166660893 166661385 1.510000e-147 532
12 TraesCS1A01G112300 chr1B 93.902 82 3 2 2781 2861 30534363 30534443 3.870000e-24 122
13 TraesCS1A01G112300 chr1B 98.551 69 1 0 2793 2861 663654965 663654897 3.870000e-24 122
14 TraesCS1A01G112300 chr6B 97.460 2126 33 2 638 2742 568189400 568191525 0.000000e+00 3607
15 TraesCS1A01G112300 chr4B 96.200 2158 37 11 638 2792 134586647 134584532 0.000000e+00 3489
16 TraesCS1A01G112300 chr3B 94.080 2196 81 23 638 2792 139621373 139623560 0.000000e+00 3290
17 TraesCS1A01G112300 chr3B 93.902 82 3 2 2781 2861 457638993 457639073 3.870000e-24 122
18 TraesCS1A01G112300 chr4A 98.258 1435 21 1 805 2239 705572674 705571244 0.000000e+00 2508
19 TraesCS1A01G112300 chr4A 93.501 754 26 14 2040 2792 705571378 705570647 0.000000e+00 1099
20 TraesCS1A01G112300 chr4A 98.551 69 1 0 2793 2861 705568350 705568282 3.870000e-24 122
21 TraesCS1A01G112300 chr1D 92.688 506 28 8 124 621 110012327 110012831 0.000000e+00 721
22 TraesCS1A01G112300 chr5B 93.902 82 3 2 2781 2861 448590890 448590970 3.870000e-24 122
23 TraesCS1A01G112300 chr5A 93.902 82 3 2 2781 2861 666319831 666319911 3.870000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G112300 chr1A 113881579 113884439 2860 False 5284.0 5284 100.0000 1 2861 1 chr1A.!!$F1 2860
1 TraesCS1A01G112300 chr1A 485329625 485330354 729 False 931.0 931 90.5610 2101 2792 1 chr1A.!!$F2 691
2 TraesCS1A01G112300 chr3A 457924767 457926947 2180 False 3727.0 3727 97.7070 638 2792 1 chr3A.!!$F1 2154
3 TraesCS1A01G112300 chr3A 11577167 11579359 2192 False 1929.5 2752 95.7225 638 2792 2 chr3A.!!$F2 2154
4 TraesCS1A01G112300 chr7A 345261323 345265863 4540 False 1910.5 3699 95.7100 638 2861 2 chr7A.!!$F2 2223
5 TraesCS1A01G112300 chr2B 571946246 571948421 2175 False 3694.0 3694 97.4720 638 2792 1 chr2B.!!$F1 2154
6 TraesCS1A01G112300 chr1B 322392657 322394830 2173 False 3692.0 3692 97.4720 638 2792 1 chr1B.!!$F3 2154
7 TraesCS1A01G112300 chr6B 568189400 568191525 2125 False 3607.0 3607 97.4600 638 2742 1 chr6B.!!$F1 2104
8 TraesCS1A01G112300 chr4B 134584532 134586647 2115 True 3489.0 3489 96.2000 638 2792 1 chr4B.!!$R1 2154
9 TraesCS1A01G112300 chr3B 139621373 139623560 2187 False 3290.0 3290 94.0800 638 2792 1 chr3B.!!$F1 2154
10 TraesCS1A01G112300 chr4A 705568282 705572674 4392 True 1243.0 2508 96.7700 805 2861 3 chr4A.!!$R1 2056
11 TraesCS1A01G112300 chr1D 110012327 110012831 504 False 721.0 721 92.6880 124 621 1 chr1D.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 295 0.037697 TCGAGTTCCGGGTGTTGATG 60.038 55.0 0.0 0.0 39.14 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2442 1.501582 ACTACCTGAAGATCCCTGGC 58.498 55.0 8.07 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.048877 ACGTACGGTGCGGGAAAG 60.049 61.111 21.96 0.00 0.00 2.62
18 19 2.812178 CGTACGGTGCGGGAAAGG 60.812 66.667 10.90 0.00 0.00 3.11
19 20 2.658422 GTACGGTGCGGGAAAGGA 59.342 61.111 0.00 0.00 0.00 3.36
20 21 1.447314 GTACGGTGCGGGAAAGGAG 60.447 63.158 0.00 0.00 0.00 3.69
21 22 2.652095 TACGGTGCGGGAAAGGAGG 61.652 63.158 0.00 0.00 0.00 4.30
22 23 3.702048 CGGTGCGGGAAAGGAGGA 61.702 66.667 0.00 0.00 0.00 3.71
23 24 2.754375 GGTGCGGGAAAGGAGGAA 59.246 61.111 0.00 0.00 0.00 3.36
24 25 1.074248 GGTGCGGGAAAGGAGGAAA 59.926 57.895 0.00 0.00 0.00 3.13
25 26 1.241990 GGTGCGGGAAAGGAGGAAAC 61.242 60.000 0.00 0.00 0.00 2.78
26 27 1.302192 TGCGGGAAAGGAGGAAACG 60.302 57.895 0.00 0.00 0.00 3.60
27 28 1.004200 GCGGGAAAGGAGGAAACGA 60.004 57.895 0.00 0.00 0.00 3.85
28 29 0.392595 GCGGGAAAGGAGGAAACGAT 60.393 55.000 0.00 0.00 0.00 3.73
29 30 1.134610 GCGGGAAAGGAGGAAACGATA 60.135 52.381 0.00 0.00 0.00 2.92
30 31 2.547826 CGGGAAAGGAGGAAACGATAC 58.452 52.381 0.00 0.00 0.00 2.24
31 32 2.093869 CGGGAAAGGAGGAAACGATACA 60.094 50.000 0.00 0.00 0.00 2.29
32 33 3.618019 CGGGAAAGGAGGAAACGATACAA 60.618 47.826 0.00 0.00 0.00 2.41
33 34 3.939592 GGGAAAGGAGGAAACGATACAAG 59.060 47.826 0.00 0.00 0.00 3.16
34 35 3.939592 GGAAAGGAGGAAACGATACAAGG 59.060 47.826 0.00 0.00 0.00 3.61
35 36 3.629142 AAGGAGGAAACGATACAAGGG 57.371 47.619 0.00 0.00 0.00 3.95
36 37 2.829023 AGGAGGAAACGATACAAGGGA 58.171 47.619 0.00 0.00 0.00 4.20
37 38 3.385115 AGGAGGAAACGATACAAGGGAT 58.615 45.455 0.00 0.00 0.00 3.85
38 39 3.780850 AGGAGGAAACGATACAAGGGATT 59.219 43.478 0.00 0.00 0.00 3.01
39 40 4.127907 GGAGGAAACGATACAAGGGATTC 58.872 47.826 0.00 0.00 0.00 2.52
40 41 3.793559 AGGAAACGATACAAGGGATTCG 58.206 45.455 0.00 0.00 37.60 3.34
41 42 2.870411 GGAAACGATACAAGGGATTCGG 59.130 50.000 0.00 0.00 35.98 4.30
42 43 2.614829 AACGATACAAGGGATTCGGG 57.385 50.000 0.00 0.00 35.98 5.14
43 44 0.106149 ACGATACAAGGGATTCGGGC 59.894 55.000 0.00 0.00 35.98 6.13
44 45 0.105964 CGATACAAGGGATTCGGGCA 59.894 55.000 0.00 0.00 0.00 5.36
45 46 1.873903 CGATACAAGGGATTCGGGCAG 60.874 57.143 0.00 0.00 0.00 4.85
46 47 0.179018 ATACAAGGGATTCGGGCAGC 60.179 55.000 0.00 0.00 0.00 5.25
47 48 2.265467 TACAAGGGATTCGGGCAGCC 62.265 60.000 1.26 1.26 0.00 4.85
48 49 4.489771 AAGGGATTCGGGCAGCCG 62.490 66.667 5.00 0.62 0.00 5.52
58 59 4.868116 GGCAGCCGCGGGGATTTA 62.868 66.667 29.38 0.00 39.92 1.40
59 60 3.583086 GCAGCCGCGGGGATTTAC 61.583 66.667 29.38 8.07 34.06 2.01
60 61 2.900337 CAGCCGCGGGGATTTACC 60.900 66.667 29.38 7.21 34.06 2.85
69 70 2.034104 GGGGATTTACCGAGGTTCAC 57.966 55.000 0.00 0.00 40.11 3.18
70 71 1.407851 GGGGATTTACCGAGGTTCACC 60.408 57.143 0.00 0.00 40.11 4.02
71 72 1.648504 GGATTTACCGAGGTTCACCG 58.351 55.000 0.00 0.00 42.08 4.94
78 79 1.437986 CGAGGTTCACCGGAGATCC 59.562 63.158 18.36 18.36 42.08 3.36
88 89 3.121019 GGAGATCCGACCACCTCG 58.879 66.667 0.00 0.00 42.54 4.63
89 90 1.453379 GGAGATCCGACCACCTCGA 60.453 63.158 0.00 0.00 46.14 4.04
90 91 1.726533 GGAGATCCGACCACCTCGAC 61.727 65.000 0.00 0.00 46.14 4.20
91 92 2.049475 GAGATCCGACCACCTCGACG 62.049 65.000 0.00 0.00 46.14 5.12
92 93 3.753070 GATCCGACCACCTCGACGC 62.753 68.421 0.00 0.00 46.14 5.19
135 136 3.785859 GCACGGCAGGGATGGAGA 61.786 66.667 0.00 0.00 0.00 3.71
167 169 4.779733 GAGGGAGGGAGCACGGGA 62.780 72.222 0.00 0.00 0.00 5.14
168 170 4.787280 AGGGAGGGAGCACGGGAG 62.787 72.222 0.00 0.00 0.00 4.30
171 173 3.003763 GAGGGAGCACGGGAGGTT 61.004 66.667 0.00 0.00 0.00 3.50
172 174 1.684734 GAGGGAGCACGGGAGGTTA 60.685 63.158 0.00 0.00 0.00 2.85
173 175 1.957765 GAGGGAGCACGGGAGGTTAC 61.958 65.000 0.00 0.00 0.00 2.50
174 176 2.183555 GGAGCACGGGAGGTTACG 59.816 66.667 0.00 0.00 0.00 3.18
175 177 2.183555 GAGCACGGGAGGTTACGG 59.816 66.667 0.00 0.00 0.00 4.02
176 178 3.366739 GAGCACGGGAGGTTACGGG 62.367 68.421 0.00 0.00 36.40 5.28
177 179 3.384532 GCACGGGAGGTTACGGGA 61.385 66.667 0.00 0.00 35.00 5.14
178 180 2.946346 GCACGGGAGGTTACGGGAA 61.946 63.158 0.00 0.00 35.00 3.97
179 181 1.079612 CACGGGAGGTTACGGGAAC 60.080 63.158 0.00 0.00 35.00 3.62
180 182 1.228988 ACGGGAGGTTACGGGAACT 60.229 57.895 2.62 0.00 38.21 3.01
181 183 1.253593 ACGGGAGGTTACGGGAACTC 61.254 60.000 2.62 0.00 38.21 3.01
182 184 1.514553 GGGAGGTTACGGGAACTCG 59.485 63.158 2.62 0.00 38.21 4.18
183 185 1.514553 GGAGGTTACGGGAACTCGG 59.485 63.158 2.62 0.00 38.21 4.63
184 186 1.514553 GAGGTTACGGGAACTCGGG 59.485 63.158 2.62 0.00 38.21 5.14
185 187 1.953231 GAGGTTACGGGAACTCGGGG 61.953 65.000 2.62 0.00 38.21 5.73
186 188 1.984026 GGTTACGGGAACTCGGGGA 60.984 63.158 2.62 0.00 38.21 4.81
187 189 1.514553 GTTACGGGAACTCGGGGAG 59.485 63.158 0.00 0.00 34.96 4.30
188 190 2.353610 TTACGGGAACTCGGGGAGC 61.354 63.158 0.00 0.00 32.04 4.70
192 194 3.145551 GGAACTCGGGGAGCGCTA 61.146 66.667 11.50 0.00 32.04 4.26
193 195 2.718073 GGAACTCGGGGAGCGCTAA 61.718 63.158 11.50 0.00 32.04 3.09
194 196 1.217244 GAACTCGGGGAGCGCTAAA 59.783 57.895 11.50 0.00 32.04 1.85
195 197 0.806492 GAACTCGGGGAGCGCTAAAG 60.806 60.000 11.50 6.16 32.04 1.85
196 198 2.586357 CTCGGGGAGCGCTAAAGC 60.586 66.667 11.50 0.00 37.78 3.51
197 199 4.157120 TCGGGGAGCGCTAAAGCC 62.157 66.667 11.50 7.21 37.91 4.35
199 201 4.109675 GGGGAGCGCTAAAGCCCA 62.110 66.667 27.75 0.00 42.52 5.36
200 202 2.045340 GGGAGCGCTAAAGCCCAA 60.045 61.111 23.43 0.00 40.39 4.12
201 203 2.115291 GGGAGCGCTAAAGCCCAAG 61.115 63.158 23.43 0.00 40.39 3.61
202 204 1.078426 GGAGCGCTAAAGCCCAAGA 60.078 57.895 11.50 0.00 37.91 3.02
203 205 0.676782 GGAGCGCTAAAGCCCAAGAA 60.677 55.000 11.50 0.00 37.91 2.52
204 206 0.729690 GAGCGCTAAAGCCCAAGAAG 59.270 55.000 11.50 0.00 37.91 2.85
205 207 0.678048 AGCGCTAAAGCCCAAGAAGG 60.678 55.000 8.99 0.00 37.91 3.46
213 215 2.124151 CCCAAGAAGGCATCGGGG 60.124 66.667 7.87 7.87 39.94 5.73
214 216 2.830370 CCAAGAAGGCATCGGGGC 60.830 66.667 0.00 0.00 43.80 5.80
237 239 3.351416 GGTTTTCGGCGGCGAGTT 61.351 61.111 32.72 0.00 0.00 3.01
238 240 2.635338 GTTTTCGGCGGCGAGTTT 59.365 55.556 32.72 0.00 0.00 2.66
239 241 1.567746 GGTTTTCGGCGGCGAGTTTA 61.568 55.000 32.72 16.93 0.00 2.01
240 242 0.451628 GTTTTCGGCGGCGAGTTTAC 60.452 55.000 32.72 23.31 0.00 2.01
241 243 1.888958 TTTTCGGCGGCGAGTTTACG 61.889 55.000 32.72 1.61 0.00 3.18
242 244 4.781959 TCGGCGGCGAGTTTACGG 62.782 66.667 31.46 0.00 0.00 4.02
244 246 3.484547 GGCGGCGAGTTTACGGTG 61.485 66.667 12.98 0.00 0.00 4.94
245 247 3.484547 GCGGCGAGTTTACGGTGG 61.485 66.667 12.98 0.00 0.00 4.61
246 248 2.048877 CGGCGAGTTTACGGTGGT 60.049 61.111 0.00 0.00 0.00 4.16
247 249 2.377310 CGGCGAGTTTACGGTGGTG 61.377 63.158 0.00 0.00 0.00 4.17
248 250 2.674084 GGCGAGTTTACGGTGGTGC 61.674 63.158 0.00 0.00 0.00 5.01
249 251 2.674084 GCGAGTTTACGGTGGTGCC 61.674 63.158 0.00 0.00 0.00 5.01
250 252 2.030958 CGAGTTTACGGTGGTGCCC 61.031 63.158 0.00 0.00 0.00 5.36
251 253 1.673337 GAGTTTACGGTGGTGCCCC 60.673 63.158 0.00 0.00 0.00 5.80
252 254 2.120737 GAGTTTACGGTGGTGCCCCT 62.121 60.000 0.00 0.00 0.00 4.79
253 255 1.969589 GTTTACGGTGGTGCCCCTG 60.970 63.158 0.00 0.00 0.00 4.45
254 256 3.198953 TTTACGGTGGTGCCCCTGG 62.199 63.158 0.00 0.00 0.00 4.45
279 281 4.785767 GGGGGTTTTCGTTCGAGT 57.214 55.556 0.00 0.00 0.00 4.18
280 282 3.011085 GGGGGTTTTCGTTCGAGTT 57.989 52.632 0.00 0.00 0.00 3.01
281 283 0.870393 GGGGGTTTTCGTTCGAGTTC 59.130 55.000 0.00 0.00 0.00 3.01
282 284 0.870393 GGGGTTTTCGTTCGAGTTCC 59.130 55.000 0.00 0.26 0.00 3.62
283 285 0.509929 GGGTTTTCGTTCGAGTTCCG 59.490 55.000 0.00 0.00 40.25 4.30
284 286 0.509929 GGTTTTCGTTCGAGTTCCGG 59.490 55.000 0.00 0.00 39.14 5.14
285 287 0.509929 GTTTTCGTTCGAGTTCCGGG 59.490 55.000 0.00 0.00 39.14 5.73
286 288 0.104671 TTTTCGTTCGAGTTCCGGGT 59.895 50.000 0.00 0.00 39.14 5.28
287 289 0.598158 TTTCGTTCGAGTTCCGGGTG 60.598 55.000 0.00 0.00 39.14 4.61
288 290 1.737355 TTCGTTCGAGTTCCGGGTGT 61.737 55.000 0.00 0.00 39.14 4.16
289 291 1.300388 CGTTCGAGTTCCGGGTGTT 60.300 57.895 0.00 0.00 39.14 3.32
290 292 1.554042 CGTTCGAGTTCCGGGTGTTG 61.554 60.000 0.00 0.00 39.14 3.33
291 293 0.249573 GTTCGAGTTCCGGGTGTTGA 60.250 55.000 0.00 0.00 39.14 3.18
292 294 0.682852 TTCGAGTTCCGGGTGTTGAT 59.317 50.000 0.00 0.00 39.14 2.57
293 295 0.037697 TCGAGTTCCGGGTGTTGATG 60.038 55.000 0.00 0.00 39.14 3.07
294 296 0.037697 CGAGTTCCGGGTGTTGATGA 60.038 55.000 0.00 0.00 33.91 2.92
295 297 1.726853 GAGTTCCGGGTGTTGATGAG 58.273 55.000 0.00 0.00 0.00 2.90
296 298 0.321653 AGTTCCGGGTGTTGATGAGC 60.322 55.000 0.00 0.00 0.00 4.26
297 299 0.321653 GTTCCGGGTGTTGATGAGCT 60.322 55.000 0.00 0.00 0.00 4.09
298 300 0.321564 TTCCGGGTGTTGATGAGCTG 60.322 55.000 0.00 0.00 0.00 4.24
299 301 1.746615 CCGGGTGTTGATGAGCTGG 60.747 63.158 0.00 0.00 0.00 4.85
300 302 1.296392 CGGGTGTTGATGAGCTGGA 59.704 57.895 0.00 0.00 0.00 3.86
301 303 1.021390 CGGGTGTTGATGAGCTGGAC 61.021 60.000 0.00 0.00 0.00 4.02
302 304 1.021390 GGGTGTTGATGAGCTGGACG 61.021 60.000 0.00 0.00 0.00 4.79
303 305 1.639298 GGTGTTGATGAGCTGGACGC 61.639 60.000 0.00 0.00 39.57 5.19
304 306 1.375908 TGTTGATGAGCTGGACGCC 60.376 57.895 0.00 0.00 40.39 5.68
305 307 1.375908 GTTGATGAGCTGGACGCCA 60.376 57.895 0.00 0.00 40.39 5.69
306 308 1.375908 TTGATGAGCTGGACGCCAC 60.376 57.895 0.00 0.00 40.39 5.01
307 309 2.887568 GATGAGCTGGACGCCACG 60.888 66.667 0.00 0.00 40.39 4.94
308 310 4.457496 ATGAGCTGGACGCCACGG 62.457 66.667 0.00 0.00 40.39 4.94
313 315 3.691342 CTGGACGCCACGGGAGAA 61.691 66.667 0.00 0.00 0.00 2.87
314 316 3.649277 CTGGACGCCACGGGAGAAG 62.649 68.421 0.00 0.00 0.00 2.85
315 317 4.452733 GGACGCCACGGGAGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
316 318 4.452733 GACGCCACGGGAGAAGGG 62.453 72.222 0.00 0.00 0.00 3.95
318 320 3.072468 CGCCACGGGAGAAGGGTA 61.072 66.667 0.00 0.00 0.00 3.69
319 321 2.652095 CGCCACGGGAGAAGGGTAA 61.652 63.158 0.00 0.00 0.00 2.85
320 322 1.078637 GCCACGGGAGAAGGGTAAC 60.079 63.158 0.00 0.00 0.00 2.50
321 323 1.551019 GCCACGGGAGAAGGGTAACT 61.551 60.000 0.00 0.00 0.00 2.24
322 324 0.249398 CCACGGGAGAAGGGTAACTG 59.751 60.000 0.00 0.00 0.00 3.16
323 325 0.391263 CACGGGAGAAGGGTAACTGC 60.391 60.000 0.00 0.00 0.00 4.40
324 326 1.221021 CGGGAGAAGGGTAACTGCC 59.779 63.158 0.00 0.00 40.41 4.85
325 327 1.550130 CGGGAGAAGGGTAACTGCCA 61.550 60.000 0.00 0.00 43.21 4.92
326 328 0.253327 GGGAGAAGGGTAACTGCCAG 59.747 60.000 0.00 0.00 42.72 4.85
327 329 0.393132 GGAGAAGGGTAACTGCCAGC 60.393 60.000 0.00 0.00 0.00 4.85
328 330 0.393132 GAGAAGGGTAACTGCCAGCC 60.393 60.000 0.00 0.00 0.00 4.85
329 331 1.133809 AGAAGGGTAACTGCCAGCCA 61.134 55.000 0.00 0.00 35.96 4.75
330 332 0.960861 GAAGGGTAACTGCCAGCCAC 60.961 60.000 0.00 0.00 35.96 5.01
331 333 1.715019 AAGGGTAACTGCCAGCCACA 61.715 55.000 0.00 0.00 35.96 4.17
332 334 1.000896 GGGTAACTGCCAGCCACAT 60.001 57.895 0.00 0.00 33.62 3.21
333 335 0.611896 GGGTAACTGCCAGCCACATT 60.612 55.000 0.00 0.00 33.62 2.71
334 336 1.340600 GGGTAACTGCCAGCCACATTA 60.341 52.381 0.00 0.00 33.62 1.90
335 337 2.442413 GGTAACTGCCAGCCACATTAA 58.558 47.619 0.00 0.00 0.00 1.40
336 338 2.163613 GGTAACTGCCAGCCACATTAAC 59.836 50.000 0.00 0.00 0.00 2.01
337 339 0.881118 AACTGCCAGCCACATTAACG 59.119 50.000 0.00 0.00 0.00 3.18
338 340 0.250727 ACTGCCAGCCACATTAACGT 60.251 50.000 0.00 0.00 0.00 3.99
339 341 0.881118 CTGCCAGCCACATTAACGTT 59.119 50.000 5.88 5.88 0.00 3.99
340 342 0.595588 TGCCAGCCACATTAACGTTG 59.404 50.000 11.99 0.00 0.00 4.10
341 343 0.732538 GCCAGCCACATTAACGTTGC 60.733 55.000 11.99 4.32 0.00 4.17
342 344 0.881118 CCAGCCACATTAACGTTGCT 59.119 50.000 11.99 6.91 38.33 3.91
343 345 1.967762 CAGCCACATTAACGTTGCTG 58.032 50.000 17.99 17.99 45.63 4.41
344 346 1.890876 AGCCACATTAACGTTGCTGA 58.109 45.000 11.99 0.00 36.59 4.26
345 347 1.806542 AGCCACATTAACGTTGCTGAG 59.193 47.619 11.99 6.71 36.59 3.35
346 348 1.535462 GCCACATTAACGTTGCTGAGT 59.465 47.619 11.99 0.00 0.00 3.41
347 349 2.739913 GCCACATTAACGTTGCTGAGTA 59.260 45.455 11.99 0.00 0.00 2.59
348 350 3.187637 GCCACATTAACGTTGCTGAGTAA 59.812 43.478 11.99 0.00 0.00 2.24
349 351 4.319911 GCCACATTAACGTTGCTGAGTAAA 60.320 41.667 11.99 0.00 0.00 2.01
350 352 5.619086 GCCACATTAACGTTGCTGAGTAAAT 60.619 40.000 11.99 0.00 0.00 1.40
351 353 6.378582 CCACATTAACGTTGCTGAGTAAATT 58.621 36.000 11.99 0.00 0.00 1.82
352 354 7.523219 CCACATTAACGTTGCTGAGTAAATTA 58.477 34.615 11.99 0.00 0.00 1.40
353 355 7.692291 CCACATTAACGTTGCTGAGTAAATTAG 59.308 37.037 11.99 0.00 0.00 1.73
354 356 8.227791 CACATTAACGTTGCTGAGTAAATTAGT 58.772 33.333 11.99 0.00 0.00 2.24
355 357 8.440833 ACATTAACGTTGCTGAGTAAATTAGTC 58.559 33.333 11.99 1.02 0.00 2.59
356 358 7.949903 TTAACGTTGCTGAGTAAATTAGTCA 57.050 32.000 11.99 9.86 36.71 3.41
367 369 9.140286 CTGAGTAAATTAGTCAGTTTCGAATGA 57.860 33.333 23.11 0.00 46.37 2.57
368 370 9.653287 TGAGTAAATTAGTCAGTTTCGAATGAT 57.347 29.630 6.45 0.00 33.40 2.45
369 371 9.907576 GAGTAAATTAGTCAGTTTCGAATGATG 57.092 33.333 0.00 0.00 0.00 3.07
370 372 8.883731 AGTAAATTAGTCAGTTTCGAATGATGG 58.116 33.333 0.00 0.00 0.00 3.51
371 373 7.687941 AAATTAGTCAGTTTCGAATGATGGT 57.312 32.000 0.00 0.00 0.00 3.55
372 374 6.668541 ATTAGTCAGTTTCGAATGATGGTG 57.331 37.500 0.00 0.00 0.00 4.17
373 375 3.338249 AGTCAGTTTCGAATGATGGTGG 58.662 45.455 0.00 0.00 0.00 4.61
374 376 2.083774 TCAGTTTCGAATGATGGTGGC 58.916 47.619 0.00 0.00 0.00 5.01
375 377 1.086696 AGTTTCGAATGATGGTGGCG 58.913 50.000 0.00 0.00 0.00 5.69
376 378 0.523335 GTTTCGAATGATGGTGGCGC 60.523 55.000 0.00 0.00 0.00 6.53
377 379 0.676466 TTTCGAATGATGGTGGCGCT 60.676 50.000 7.64 0.00 0.00 5.92
378 380 0.676466 TTCGAATGATGGTGGCGCTT 60.676 50.000 7.64 0.00 0.00 4.68
379 381 1.089481 TCGAATGATGGTGGCGCTTC 61.089 55.000 7.64 0.00 0.00 3.86
380 382 1.091771 CGAATGATGGTGGCGCTTCT 61.092 55.000 7.64 0.00 0.00 2.85
381 383 0.659957 GAATGATGGTGGCGCTTCTC 59.340 55.000 7.64 0.00 0.00 2.87
382 384 1.091771 AATGATGGTGGCGCTTCTCG 61.092 55.000 7.64 0.00 42.12 4.04
392 394 4.845705 GCTTCTCGCTCGCTCGCT 62.846 66.667 0.00 0.00 35.14 4.93
393 395 2.948648 CTTCTCGCTCGCTCGCTG 60.949 66.667 0.00 0.00 0.00 5.18
394 396 3.675482 CTTCTCGCTCGCTCGCTGT 62.675 63.158 0.00 0.00 0.00 4.40
395 397 3.953444 TTCTCGCTCGCTCGCTGTG 62.953 63.158 0.00 0.00 0.00 3.66
396 398 4.467062 CTCGCTCGCTCGCTGTGA 62.467 66.667 0.00 0.00 0.00 3.58
415 417 3.010144 GGGACCACATGGGCTGAT 58.990 61.111 3.17 0.00 44.77 2.90
416 418 1.454479 GGGACCACATGGGCTGATG 60.454 63.158 3.17 0.00 44.77 3.07
417 419 1.454479 GGACCACATGGGCTGATGG 60.454 63.158 3.17 0.00 44.77 3.51
418 420 1.454479 GACCACATGGGCTGATGGG 60.454 63.158 2.32 0.00 41.12 4.00
419 421 2.836360 CCACATGGGCTGATGGGC 60.836 66.667 0.00 0.00 40.05 5.36
420 422 3.214123 CACATGGGCTGATGGGCG 61.214 66.667 0.00 0.00 41.87 6.13
446 448 4.227134 CCGGCCGTGGAGATGGAG 62.227 72.222 26.12 0.00 0.00 3.86
447 449 4.899239 CGGCCGTGGAGATGGAGC 62.899 72.222 19.50 0.00 0.00 4.70
448 450 4.554036 GGCCGTGGAGATGGAGCC 62.554 72.222 0.00 0.00 0.00 4.70
449 451 3.474570 GCCGTGGAGATGGAGCCT 61.475 66.667 0.00 0.00 0.00 4.58
450 452 2.503061 CCGTGGAGATGGAGCCTG 59.497 66.667 0.00 0.00 0.00 4.85
451 453 2.362369 CCGTGGAGATGGAGCCTGT 61.362 63.158 0.00 0.00 0.00 4.00
452 454 1.142748 CGTGGAGATGGAGCCTGTC 59.857 63.158 0.00 0.00 0.00 3.51
453 455 1.142748 GTGGAGATGGAGCCTGTCG 59.857 63.158 0.00 0.00 0.00 4.35
454 456 2.107953 GGAGATGGAGCCTGTCGC 59.892 66.667 0.00 0.00 37.98 5.19
455 457 2.107953 GAGATGGAGCCTGTCGCC 59.892 66.667 0.00 0.00 38.78 5.54
456 458 3.781770 GAGATGGAGCCTGTCGCCG 62.782 68.421 0.00 0.00 37.48 6.46
457 459 4.899239 GATGGAGCCTGTCGCCGG 62.899 72.222 0.00 0.00 37.48 6.13
461 463 3.760035 GAGCCTGTCGCCGGAGAA 61.760 66.667 10.32 0.00 38.78 2.87
462 464 3.296709 GAGCCTGTCGCCGGAGAAA 62.297 63.158 10.32 2.88 38.78 2.52
463 465 2.815647 GCCTGTCGCCGGAGAAAG 60.816 66.667 17.93 17.93 0.00 2.62
464 466 2.657237 CCTGTCGCCGGAGAAAGT 59.343 61.111 22.24 0.00 0.00 2.66
465 467 1.738099 CCTGTCGCCGGAGAAAGTG 60.738 63.158 22.24 11.20 0.00 3.16
466 468 1.738099 CTGTCGCCGGAGAAAGTGG 60.738 63.158 16.75 0.00 0.00 4.00
467 469 2.342648 GTCGCCGGAGAAAGTGGT 59.657 61.111 10.32 0.00 0.00 4.16
468 470 1.180456 TGTCGCCGGAGAAAGTGGTA 61.180 55.000 10.32 0.00 0.00 3.25
469 471 0.458025 GTCGCCGGAGAAAGTGGTAG 60.458 60.000 10.32 0.00 0.00 3.18
470 472 1.153628 CGCCGGAGAAAGTGGTAGG 60.154 63.158 5.05 0.00 0.00 3.18
471 473 1.601419 CGCCGGAGAAAGTGGTAGGA 61.601 60.000 5.05 0.00 0.00 2.94
472 474 0.108281 GCCGGAGAAAGTGGTAGGAC 60.108 60.000 5.05 0.00 0.00 3.85
473 475 0.535797 CCGGAGAAAGTGGTAGGACC 59.464 60.000 0.00 0.00 39.22 4.46
474 476 0.535797 CGGAGAAAGTGGTAGGACCC 59.464 60.000 0.00 0.00 37.50 4.46
475 477 0.535797 GGAGAAAGTGGTAGGACCCG 59.464 60.000 0.00 0.00 37.50 5.28
476 478 0.108281 GAGAAAGTGGTAGGACCCGC 60.108 60.000 0.00 0.00 37.50 6.13
478 480 0.391263 GAAAGTGGTAGGACCCGCTG 60.391 60.000 0.00 0.00 44.50 5.18
479 481 2.465055 AAAGTGGTAGGACCCGCTGC 62.465 60.000 0.00 0.00 44.50 5.25
480 482 4.468689 GTGGTAGGACCCGCTGCC 62.469 72.222 0.00 0.00 37.50 4.85
492 494 3.365265 GCTGCCGGTGTGGGAAAG 61.365 66.667 1.90 0.00 37.78 2.62
493 495 2.672996 CTGCCGGTGTGGGAAAGG 60.673 66.667 1.90 0.00 37.78 3.11
494 496 4.278513 TGCCGGTGTGGGAAAGGG 62.279 66.667 1.90 0.00 38.63 3.95
495 497 3.961414 GCCGGTGTGGGAAAGGGA 61.961 66.667 1.90 0.00 38.63 4.20
496 498 2.840576 CCGGTGTGGGAAAGGGAA 59.159 61.111 0.00 0.00 0.00 3.97
497 499 1.151908 CCGGTGTGGGAAAGGGAAA 59.848 57.895 0.00 0.00 0.00 3.13
498 500 0.893727 CCGGTGTGGGAAAGGGAAAG 60.894 60.000 0.00 0.00 0.00 2.62
499 501 1.524008 CGGTGTGGGAAAGGGAAAGC 61.524 60.000 0.00 0.00 0.00 3.51
500 502 1.185618 GGTGTGGGAAAGGGAAAGCC 61.186 60.000 0.00 0.00 0.00 4.35
501 503 0.178961 GTGTGGGAAAGGGAAAGCCT 60.179 55.000 0.00 0.00 0.00 4.58
502 504 0.112412 TGTGGGAAAGGGAAAGCCTC 59.888 55.000 0.00 0.00 0.00 4.70
503 505 0.960861 GTGGGAAAGGGAAAGCCTCG 60.961 60.000 0.00 0.00 0.00 4.63
504 506 1.378646 GGGAAAGGGAAAGCCTCGG 60.379 63.158 0.00 0.00 0.00 4.63
505 507 1.683441 GGAAAGGGAAAGCCTCGGA 59.317 57.895 0.00 0.00 0.00 4.55
506 508 0.256177 GGAAAGGGAAAGCCTCGGAT 59.744 55.000 0.00 0.00 0.00 4.18
507 509 1.669604 GAAAGGGAAAGCCTCGGATC 58.330 55.000 0.00 0.00 0.00 3.36
508 510 0.107654 AAAGGGAAAGCCTCGGATCG 60.108 55.000 0.00 0.00 0.00 3.69
509 511 2.589159 GGGAAAGCCTCGGATCGC 60.589 66.667 0.00 0.00 0.00 4.58
510 512 2.962253 GGAAAGCCTCGGATCGCG 60.962 66.667 0.00 0.00 0.00 5.87
511 513 2.962253 GAAAGCCTCGGATCGCGG 60.962 66.667 6.13 0.00 34.60 6.46
544 546 3.446570 GCGGCAGCAGCTTTGGAT 61.447 61.111 10.66 0.00 44.35 3.41
545 547 2.796651 CGGCAGCAGCTTTGGATC 59.203 61.111 0.00 0.00 41.70 3.36
546 548 2.768492 CGGCAGCAGCTTTGGATCC 61.768 63.158 4.20 4.20 41.70 3.36
547 549 1.379576 GGCAGCAGCTTTGGATCCT 60.380 57.895 14.23 0.00 41.70 3.24
548 550 0.969409 GGCAGCAGCTTTGGATCCTT 60.969 55.000 14.23 0.00 41.70 3.36
549 551 0.455005 GCAGCAGCTTTGGATCCTTC 59.545 55.000 14.23 0.00 37.91 3.46
550 552 1.101331 CAGCAGCTTTGGATCCTTCC 58.899 55.000 14.23 0.00 42.94 3.46
551 553 0.998145 AGCAGCTTTGGATCCTTCCT 59.002 50.000 14.23 1.16 43.07 3.36
552 554 1.101331 GCAGCTTTGGATCCTTCCTG 58.899 55.000 14.23 14.15 43.07 3.86
553 555 1.760192 CAGCTTTGGATCCTTCCTGG 58.240 55.000 14.23 0.00 43.07 4.45
554 556 0.627986 AGCTTTGGATCCTTCCTGGG 59.372 55.000 14.23 0.00 43.07 4.45
555 557 0.332972 GCTTTGGATCCTTCCTGGGT 59.667 55.000 14.23 0.00 43.07 4.51
556 558 1.683319 GCTTTGGATCCTTCCTGGGTC 60.683 57.143 14.23 0.00 45.26 4.46
557 559 1.918957 CTTTGGATCCTTCCTGGGTCT 59.081 52.381 14.23 0.00 45.31 3.85
558 560 1.289160 TTGGATCCTTCCTGGGTCTG 58.711 55.000 14.23 0.00 45.31 3.51
559 561 0.621571 TGGATCCTTCCTGGGTCTGG 60.622 60.000 14.23 0.00 45.31 3.86
560 562 1.348775 GGATCCTTCCTGGGTCTGGG 61.349 65.000 3.84 0.00 45.31 4.45
561 563 0.621862 GATCCTTCCTGGGTCTGGGT 60.622 60.000 0.00 0.00 42.69 4.51
562 564 0.916358 ATCCTTCCTGGGTCTGGGTG 60.916 60.000 0.00 0.00 36.20 4.61
563 565 2.606587 CCTTCCTGGGTCTGGGTGG 61.607 68.421 0.00 0.00 0.00 4.61
564 566 3.256960 TTCCTGGGTCTGGGTGGC 61.257 66.667 0.00 0.00 0.00 5.01
567 569 4.704833 CTGGGTCTGGGTGGCGTG 62.705 72.222 0.00 0.00 0.00 5.34
570 572 4.265056 GGTCTGGGTGGCGTGGTT 62.265 66.667 0.00 0.00 0.00 3.67
571 573 2.978010 GTCTGGGTGGCGTGGTTG 60.978 66.667 0.00 0.00 0.00 3.77
572 574 3.164977 TCTGGGTGGCGTGGTTGA 61.165 61.111 0.00 0.00 0.00 3.18
573 575 2.978010 CTGGGTGGCGTGGTTGAC 60.978 66.667 0.00 0.00 0.00 3.18
574 576 4.572571 TGGGTGGCGTGGTTGACC 62.573 66.667 0.00 0.00 0.00 4.02
576 578 4.922026 GGTGGCGTGGTTGACCGT 62.922 66.667 0.00 0.00 39.43 4.83
577 579 3.645975 GTGGCGTGGTTGACCGTG 61.646 66.667 0.00 0.00 39.43 4.94
578 580 4.164087 TGGCGTGGTTGACCGTGT 62.164 61.111 0.00 0.00 39.43 4.49
579 581 2.898343 GGCGTGGTTGACCGTGTT 60.898 61.111 0.00 0.00 39.43 3.32
580 582 2.474612 GGCGTGGTTGACCGTGTTT 61.475 57.895 0.00 0.00 39.43 2.83
581 583 1.430228 GCGTGGTTGACCGTGTTTT 59.570 52.632 0.00 0.00 39.43 2.43
582 584 0.656785 GCGTGGTTGACCGTGTTTTA 59.343 50.000 0.00 0.00 39.43 1.52
583 585 1.333435 GCGTGGTTGACCGTGTTTTAG 60.333 52.381 0.00 0.00 39.43 1.85
584 586 1.262151 CGTGGTTGACCGTGTTTTAGG 59.738 52.381 0.00 0.00 39.43 2.69
585 587 1.605232 GTGGTTGACCGTGTTTTAGGG 59.395 52.381 0.00 0.00 39.43 3.53
586 588 1.241165 GGTTGACCGTGTTTTAGGGG 58.759 55.000 0.00 0.00 38.67 4.79
587 589 1.241165 GTTGACCGTGTTTTAGGGGG 58.759 55.000 0.00 0.00 38.67 5.40
588 590 0.537828 TTGACCGTGTTTTAGGGGGC 60.538 55.000 0.00 0.00 38.67 5.80
589 591 2.032987 ACCGTGTTTTAGGGGGCG 59.967 61.111 0.00 0.00 38.67 6.13
590 592 3.436924 CCGTGTTTTAGGGGGCGC 61.437 66.667 0.00 0.00 0.00 6.53
591 593 2.359478 CGTGTTTTAGGGGGCGCT 60.359 61.111 7.64 0.00 0.00 5.92
592 594 2.396157 CGTGTTTTAGGGGGCGCTC 61.396 63.158 7.64 1.18 0.00 5.03
593 595 2.046700 TGTTTTAGGGGGCGCTCG 60.047 61.111 7.64 0.00 0.00 5.03
594 596 2.046604 GTTTTAGGGGGCGCTCGT 60.047 61.111 7.64 4.50 0.00 4.18
595 597 2.046700 TTTTAGGGGGCGCTCGTG 60.047 61.111 7.64 0.00 0.00 4.35
596 598 2.886134 TTTTAGGGGGCGCTCGTGT 61.886 57.895 7.64 0.00 0.00 4.49
597 599 3.599285 TTTAGGGGGCGCTCGTGTG 62.599 63.158 7.64 0.00 0.00 3.82
603 605 4.961511 GGCGCTCGTGTGTGTGGA 62.962 66.667 7.64 0.00 0.00 4.02
604 606 2.964925 GCGCTCGTGTGTGTGGAA 60.965 61.111 0.00 0.00 0.00 3.53
605 607 2.928361 CGCTCGTGTGTGTGGAAC 59.072 61.111 0.00 0.00 37.35 3.62
623 625 6.942886 TGGAACACAATGATAAATTTTCGC 57.057 33.333 0.00 0.00 0.00 4.70
624 626 6.450545 TGGAACACAATGATAAATTTTCGCA 58.549 32.000 0.00 0.00 0.00 5.10
625 627 6.925718 TGGAACACAATGATAAATTTTCGCAA 59.074 30.769 0.00 0.00 0.00 4.85
626 628 7.116090 TGGAACACAATGATAAATTTTCGCAAG 59.884 33.333 0.00 0.00 0.00 4.01
705 707 0.538287 GCCCTCCAACTTGTCTGCTT 60.538 55.000 0.00 0.00 0.00 3.91
928 930 1.306226 CCGTCTCCTCCTTCCCCTT 60.306 63.158 0.00 0.00 0.00 3.95
2085 2217 8.685838 AAATCAGTGGCTTGTTTACTTAACTA 57.314 30.769 0.00 0.00 37.64 2.24
2250 2442 3.184382 AGTTAACCATTTGGAAGGGGG 57.816 47.619 3.01 0.00 36.44 5.40
2290 2483 2.945278 ACAACTTGCATATTTGGCACG 58.055 42.857 7.22 0.00 41.75 5.34
2521 2778 4.774726 ACTCTTCTGCATCTTCACCTCTTA 59.225 41.667 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.048877 CTTTCCCGCACCGTACGT 60.049 61.111 15.21 0.00 0.00 3.57
1 2 2.812178 CCTTTCCCGCACCGTACG 60.812 66.667 8.69 8.69 0.00 3.67
2 3 1.447314 CTCCTTTCCCGCACCGTAC 60.447 63.158 0.00 0.00 0.00 3.67
3 4 2.652095 CCTCCTTTCCCGCACCGTA 61.652 63.158 0.00 0.00 0.00 4.02
4 5 4.016706 CCTCCTTTCCCGCACCGT 62.017 66.667 0.00 0.00 0.00 4.83
5 6 2.741486 TTTCCTCCTTTCCCGCACCG 62.741 60.000 0.00 0.00 0.00 4.94
6 7 1.074248 TTTCCTCCTTTCCCGCACC 59.926 57.895 0.00 0.00 0.00 5.01
7 8 1.574702 CGTTTCCTCCTTTCCCGCAC 61.575 60.000 0.00 0.00 0.00 5.34
8 9 1.302192 CGTTTCCTCCTTTCCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
9 10 0.392595 ATCGTTTCCTCCTTTCCCGC 60.393 55.000 0.00 0.00 0.00 6.13
10 11 2.093869 TGTATCGTTTCCTCCTTTCCCG 60.094 50.000 0.00 0.00 0.00 5.14
11 12 3.622166 TGTATCGTTTCCTCCTTTCCC 57.378 47.619 0.00 0.00 0.00 3.97
12 13 3.939592 CCTTGTATCGTTTCCTCCTTTCC 59.060 47.826 0.00 0.00 0.00 3.13
13 14 3.939592 CCCTTGTATCGTTTCCTCCTTTC 59.060 47.826 0.00 0.00 0.00 2.62
14 15 3.585732 TCCCTTGTATCGTTTCCTCCTTT 59.414 43.478 0.00 0.00 0.00 3.11
15 16 3.178865 TCCCTTGTATCGTTTCCTCCTT 58.821 45.455 0.00 0.00 0.00 3.36
16 17 2.829023 TCCCTTGTATCGTTTCCTCCT 58.171 47.619 0.00 0.00 0.00 3.69
17 18 3.840124 ATCCCTTGTATCGTTTCCTCC 57.160 47.619 0.00 0.00 0.00 4.30
18 19 3.802685 CGAATCCCTTGTATCGTTTCCTC 59.197 47.826 0.00 0.00 0.00 3.71
19 20 3.431766 CCGAATCCCTTGTATCGTTTCCT 60.432 47.826 0.00 0.00 33.65 3.36
20 21 2.870411 CCGAATCCCTTGTATCGTTTCC 59.130 50.000 0.00 0.00 33.65 3.13
21 22 2.870411 CCCGAATCCCTTGTATCGTTTC 59.130 50.000 0.00 0.00 33.65 2.78
22 23 2.914059 CCCGAATCCCTTGTATCGTTT 58.086 47.619 0.00 0.00 33.65 3.60
23 24 1.474498 GCCCGAATCCCTTGTATCGTT 60.474 52.381 0.00 0.00 33.65 3.85
24 25 0.106149 GCCCGAATCCCTTGTATCGT 59.894 55.000 0.00 0.00 33.65 3.73
25 26 0.105964 TGCCCGAATCCCTTGTATCG 59.894 55.000 0.00 0.00 35.19 2.92
26 27 1.884235 CTGCCCGAATCCCTTGTATC 58.116 55.000 0.00 0.00 0.00 2.24
27 28 0.179018 GCTGCCCGAATCCCTTGTAT 60.179 55.000 0.00 0.00 0.00 2.29
28 29 1.223487 GCTGCCCGAATCCCTTGTA 59.777 57.895 0.00 0.00 0.00 2.41
29 30 2.044946 GCTGCCCGAATCCCTTGT 60.045 61.111 0.00 0.00 0.00 3.16
30 31 2.830370 GGCTGCCCGAATCCCTTG 60.830 66.667 7.66 0.00 0.00 3.61
41 42 4.868116 TAAATCCCCGCGGCTGCC 62.868 66.667 22.85 9.11 38.08 4.85
42 43 3.583086 GTAAATCCCCGCGGCTGC 61.583 66.667 22.85 7.70 37.91 5.25
43 44 2.900337 GGTAAATCCCCGCGGCTG 60.900 66.667 22.85 13.63 0.00 4.85
44 45 4.540735 CGGTAAATCCCCGCGGCT 62.541 66.667 22.85 2.90 38.85 5.52
45 46 4.534141 TCGGTAAATCCCCGCGGC 62.534 66.667 22.85 3.38 45.09 6.53
46 47 2.279918 CTCGGTAAATCCCCGCGG 60.280 66.667 21.04 21.04 45.09 6.46
47 48 2.279918 CCTCGGTAAATCCCCGCG 60.280 66.667 0.00 0.00 45.09 6.46
48 49 0.812811 GAACCTCGGTAAATCCCCGC 60.813 60.000 0.00 0.00 45.09 6.13
49 50 0.538118 TGAACCTCGGTAAATCCCCG 59.462 55.000 0.00 0.00 46.83 5.73
50 51 1.407851 GGTGAACCTCGGTAAATCCCC 60.408 57.143 0.00 0.00 0.00 4.81
51 52 1.741394 CGGTGAACCTCGGTAAATCCC 60.741 57.143 0.00 0.00 0.00 3.85
52 53 1.648504 CGGTGAACCTCGGTAAATCC 58.351 55.000 0.00 0.00 0.00 3.01
53 54 1.205417 TCCGGTGAACCTCGGTAAATC 59.795 52.381 0.00 0.00 45.79 2.17
54 55 1.206371 CTCCGGTGAACCTCGGTAAAT 59.794 52.381 0.00 0.00 45.79 1.40
55 56 0.604578 CTCCGGTGAACCTCGGTAAA 59.395 55.000 0.00 0.00 45.79 2.01
56 57 0.251297 TCTCCGGTGAACCTCGGTAA 60.251 55.000 3.14 0.00 45.79 2.85
57 58 0.033796 ATCTCCGGTGAACCTCGGTA 60.034 55.000 10.77 0.00 45.79 4.02
58 59 1.305046 ATCTCCGGTGAACCTCGGT 60.305 57.895 10.77 0.00 45.79 4.69
59 60 1.437986 GATCTCCGGTGAACCTCGG 59.562 63.158 10.77 0.00 46.89 4.63
60 61 1.437986 GGATCTCCGGTGAACCTCG 59.562 63.158 21.78 0.00 0.00 4.63
71 72 3.121019 CGAGGTGGTCGGATCTCC 58.879 66.667 1.04 1.04 45.58 3.71
113 114 4.431131 ATCCCTGCCGTGCCAAGG 62.431 66.667 0.00 0.00 0.00 3.61
114 115 3.136123 CATCCCTGCCGTGCCAAG 61.136 66.667 0.00 0.00 0.00 3.61
115 116 4.738998 CCATCCCTGCCGTGCCAA 62.739 66.667 0.00 0.00 0.00 4.52
117 118 4.864334 CTCCATCCCTGCCGTGCC 62.864 72.222 0.00 0.00 0.00 5.01
118 119 3.112205 ATCTCCATCCCTGCCGTGC 62.112 63.158 0.00 0.00 0.00 5.34
119 120 1.227764 CATCTCCATCCCTGCCGTG 60.228 63.158 0.00 0.00 0.00 4.94
120 121 1.383109 TCATCTCCATCCCTGCCGT 60.383 57.895 0.00 0.00 0.00 5.68
121 122 1.370437 CTCATCTCCATCCCTGCCG 59.630 63.158 0.00 0.00 0.00 5.69
122 123 1.759881 CCTCATCTCCATCCCTGCC 59.240 63.158 0.00 0.00 0.00 4.85
128 129 2.746359 CCCGGCCTCATCTCCATC 59.254 66.667 0.00 0.00 0.00 3.51
150 152 4.779733 TCCCGTGCTCCCTCCCTC 62.780 72.222 0.00 0.00 0.00 4.30
151 153 4.787280 CTCCCGTGCTCCCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
154 156 1.684734 TAACCTCCCGTGCTCCCTC 60.685 63.158 0.00 0.00 0.00 4.30
155 157 1.988406 GTAACCTCCCGTGCTCCCT 60.988 63.158 0.00 0.00 0.00 4.20
156 158 2.582978 GTAACCTCCCGTGCTCCC 59.417 66.667 0.00 0.00 0.00 4.30
157 159 2.183555 CGTAACCTCCCGTGCTCC 59.816 66.667 0.00 0.00 0.00 4.70
158 160 2.183555 CCGTAACCTCCCGTGCTC 59.816 66.667 0.00 0.00 0.00 4.26
159 161 3.387947 CCCGTAACCTCCCGTGCT 61.388 66.667 0.00 0.00 0.00 4.40
160 162 2.946346 TTCCCGTAACCTCCCGTGC 61.946 63.158 0.00 0.00 0.00 5.34
161 163 1.079612 GTTCCCGTAACCTCCCGTG 60.080 63.158 0.00 0.00 31.38 4.94
162 164 1.228988 AGTTCCCGTAACCTCCCGT 60.229 57.895 0.00 0.00 39.03 5.28
163 165 1.514553 GAGTTCCCGTAACCTCCCG 59.485 63.158 0.00 0.00 39.03 5.14
164 166 1.514553 CGAGTTCCCGTAACCTCCC 59.485 63.158 0.00 0.00 39.03 4.30
165 167 1.514553 CCGAGTTCCCGTAACCTCC 59.485 63.158 0.00 0.00 39.03 4.30
166 168 1.514553 CCCGAGTTCCCGTAACCTC 59.485 63.158 0.00 0.00 39.03 3.85
167 169 1.986210 CCCCGAGTTCCCGTAACCT 60.986 63.158 0.00 0.00 39.03 3.50
168 170 1.953231 CTCCCCGAGTTCCCGTAACC 61.953 65.000 0.00 0.00 39.03 2.85
169 171 1.514553 CTCCCCGAGTTCCCGTAAC 59.485 63.158 0.00 0.00 38.46 2.50
170 172 2.353610 GCTCCCCGAGTTCCCGTAA 61.354 63.158 0.00 0.00 31.39 3.18
171 173 2.757099 GCTCCCCGAGTTCCCGTA 60.757 66.667 0.00 0.00 31.39 4.02
175 177 2.234913 TTTAGCGCTCCCCGAGTTCC 62.235 60.000 16.34 0.00 40.02 3.62
176 178 0.806492 CTTTAGCGCTCCCCGAGTTC 60.806 60.000 16.34 0.00 40.02 3.01
177 179 1.218316 CTTTAGCGCTCCCCGAGTT 59.782 57.895 16.34 0.00 40.02 3.01
178 180 2.893398 CTTTAGCGCTCCCCGAGT 59.107 61.111 16.34 0.00 40.02 4.18
179 181 2.586357 GCTTTAGCGCTCCCCGAG 60.586 66.667 16.34 7.13 40.02 4.63
180 182 4.157120 GGCTTTAGCGCTCCCCGA 62.157 66.667 16.34 0.00 43.26 5.14
196 198 2.124151 CCCCGATGCCTTCTTGGG 60.124 66.667 0.00 0.00 39.69 4.12
197 199 2.830370 GCCCCGATGCCTTCTTGG 60.830 66.667 0.00 0.00 39.35 3.61
198 200 3.204827 CGCCCCGATGCCTTCTTG 61.205 66.667 0.00 0.00 0.00 3.02
199 201 3.717294 ACGCCCCGATGCCTTCTT 61.717 61.111 0.00 0.00 0.00 2.52
200 202 4.473520 CACGCCCCGATGCCTTCT 62.474 66.667 0.00 0.00 0.00 2.85
220 222 1.567746 TAAACTCGCCGCCGAAAACC 61.568 55.000 0.00 0.00 43.87 3.27
221 223 0.451628 GTAAACTCGCCGCCGAAAAC 60.452 55.000 0.00 0.00 43.87 2.43
222 224 1.861440 GTAAACTCGCCGCCGAAAA 59.139 52.632 0.00 0.00 43.87 2.29
223 225 2.374226 CGTAAACTCGCCGCCGAAA 61.374 57.895 0.00 0.00 43.87 3.46
224 226 2.806198 CGTAAACTCGCCGCCGAA 60.806 61.111 0.00 0.00 43.87 4.30
225 227 4.781959 CCGTAAACTCGCCGCCGA 62.782 66.667 0.00 0.00 42.01 5.54
227 229 3.484547 CACCGTAAACTCGCCGCC 61.485 66.667 0.00 0.00 0.00 6.13
228 230 3.484547 CCACCGTAAACTCGCCGC 61.485 66.667 0.00 0.00 0.00 6.53
229 231 2.048877 ACCACCGTAAACTCGCCG 60.049 61.111 0.00 0.00 0.00 6.46
230 232 2.674084 GCACCACCGTAAACTCGCC 61.674 63.158 0.00 0.00 0.00 5.54
231 233 2.674084 GGCACCACCGTAAACTCGC 61.674 63.158 0.00 0.00 0.00 5.03
232 234 3.557824 GGCACCACCGTAAACTCG 58.442 61.111 0.00 0.00 0.00 4.18
262 264 0.870393 GAACTCGAACGAAAACCCCC 59.130 55.000 0.00 0.00 0.00 5.40
263 265 0.870393 GGAACTCGAACGAAAACCCC 59.130 55.000 0.00 0.00 0.00 4.95
264 266 0.509929 CGGAACTCGAACGAAAACCC 59.490 55.000 0.00 0.00 42.43 4.11
265 267 0.509929 CCGGAACTCGAACGAAAACC 59.490 55.000 0.00 1.71 42.43 3.27
266 268 0.509929 CCCGGAACTCGAACGAAAAC 59.490 55.000 0.73 0.00 42.43 2.43
267 269 0.104671 ACCCGGAACTCGAACGAAAA 59.895 50.000 0.73 0.00 42.43 2.29
268 270 0.598158 CACCCGGAACTCGAACGAAA 60.598 55.000 0.73 0.00 42.43 3.46
269 271 1.007038 CACCCGGAACTCGAACGAA 60.007 57.895 0.73 0.00 42.43 3.85
270 272 1.737355 AACACCCGGAACTCGAACGA 61.737 55.000 0.73 0.00 42.43 3.85
271 273 1.300388 AACACCCGGAACTCGAACG 60.300 57.895 0.73 0.00 42.43 3.95
272 274 0.249573 TCAACACCCGGAACTCGAAC 60.250 55.000 0.73 0.00 42.43 3.95
273 275 0.682852 ATCAACACCCGGAACTCGAA 59.317 50.000 0.73 0.00 42.43 3.71
274 276 0.037697 CATCAACACCCGGAACTCGA 60.038 55.000 0.73 0.00 42.43 4.04
275 277 0.037697 TCATCAACACCCGGAACTCG 60.038 55.000 0.73 0.00 38.88 4.18
276 278 1.726853 CTCATCAACACCCGGAACTC 58.273 55.000 0.73 0.00 0.00 3.01
277 279 0.321653 GCTCATCAACACCCGGAACT 60.322 55.000 0.73 0.00 0.00 3.01
278 280 0.321653 AGCTCATCAACACCCGGAAC 60.322 55.000 0.73 0.00 0.00 3.62
279 281 0.321564 CAGCTCATCAACACCCGGAA 60.322 55.000 0.73 0.00 0.00 4.30
280 282 1.296392 CAGCTCATCAACACCCGGA 59.704 57.895 0.73 0.00 0.00 5.14
281 283 1.746615 CCAGCTCATCAACACCCGG 60.747 63.158 0.00 0.00 0.00 5.73
282 284 1.021390 GTCCAGCTCATCAACACCCG 61.021 60.000 0.00 0.00 0.00 5.28
283 285 1.021390 CGTCCAGCTCATCAACACCC 61.021 60.000 0.00 0.00 0.00 4.61
284 286 1.639298 GCGTCCAGCTCATCAACACC 61.639 60.000 0.00 0.00 44.04 4.16
285 287 1.790387 GCGTCCAGCTCATCAACAC 59.210 57.895 0.00 0.00 44.04 3.32
286 288 4.284123 GCGTCCAGCTCATCAACA 57.716 55.556 0.00 0.00 44.04 3.33
296 298 3.649277 CTTCTCCCGTGGCGTCCAG 62.649 68.421 0.00 0.00 32.34 3.86
297 299 3.691342 CTTCTCCCGTGGCGTCCA 61.691 66.667 0.00 0.00 0.00 4.02
298 300 4.452733 CCTTCTCCCGTGGCGTCC 62.453 72.222 0.00 0.00 0.00 4.79
299 301 4.452733 CCCTTCTCCCGTGGCGTC 62.453 72.222 0.00 0.00 0.00 5.19
300 302 3.892104 TACCCTTCTCCCGTGGCGT 62.892 63.158 0.00 0.00 0.00 5.68
301 303 2.652095 TTACCCTTCTCCCGTGGCG 61.652 63.158 0.00 0.00 0.00 5.69
302 304 1.078637 GTTACCCTTCTCCCGTGGC 60.079 63.158 0.00 0.00 0.00 5.01
303 305 0.249398 CAGTTACCCTTCTCCCGTGG 59.751 60.000 0.00 0.00 0.00 4.94
304 306 0.391263 GCAGTTACCCTTCTCCCGTG 60.391 60.000 0.00 0.00 0.00 4.94
305 307 1.551019 GGCAGTTACCCTTCTCCCGT 61.551 60.000 0.00 0.00 0.00 5.28
306 308 1.221021 GGCAGTTACCCTTCTCCCG 59.779 63.158 0.00 0.00 0.00 5.14
307 309 0.253327 CTGGCAGTTACCCTTCTCCC 59.747 60.000 6.28 0.00 0.00 4.30
308 310 0.393132 GCTGGCAGTTACCCTTCTCC 60.393 60.000 17.16 0.00 0.00 3.71
309 311 0.393132 GGCTGGCAGTTACCCTTCTC 60.393 60.000 17.16 0.00 0.00 2.87
310 312 1.133809 TGGCTGGCAGTTACCCTTCT 61.134 55.000 17.16 0.00 0.00 2.85
311 313 0.960861 GTGGCTGGCAGTTACCCTTC 60.961 60.000 17.16 3.17 0.00 3.46
312 314 1.074951 GTGGCTGGCAGTTACCCTT 59.925 57.895 17.16 0.00 0.00 3.95
313 315 1.500783 ATGTGGCTGGCAGTTACCCT 61.501 55.000 17.16 3.48 0.00 4.34
314 316 0.611896 AATGTGGCTGGCAGTTACCC 60.612 55.000 17.16 9.15 0.00 3.69
315 317 2.122783 TAATGTGGCTGGCAGTTACC 57.877 50.000 17.16 9.53 0.00 2.85
316 318 2.159572 CGTTAATGTGGCTGGCAGTTAC 60.160 50.000 17.16 15.22 0.00 2.50
317 319 2.080693 CGTTAATGTGGCTGGCAGTTA 58.919 47.619 17.16 4.58 0.00 2.24
318 320 0.881118 CGTTAATGTGGCTGGCAGTT 59.119 50.000 17.16 5.60 0.00 3.16
319 321 0.250727 ACGTTAATGTGGCTGGCAGT 60.251 50.000 17.16 0.00 0.00 4.40
320 322 0.881118 AACGTTAATGTGGCTGGCAG 59.119 50.000 10.94 10.94 0.00 4.85
321 323 0.595588 CAACGTTAATGTGGCTGGCA 59.404 50.000 0.00 0.00 0.00 4.92
322 324 0.732538 GCAACGTTAATGTGGCTGGC 60.733 55.000 18.33 6.46 35.83 4.85
323 325 3.399879 GCAACGTTAATGTGGCTGG 57.600 52.632 18.33 0.74 35.83 4.85
326 328 1.535462 ACTCAGCAACGTTAATGTGGC 59.465 47.619 18.00 18.00 39.18 5.01
327 329 5.351233 TTTACTCAGCAACGTTAATGTGG 57.649 39.130 0.00 0.00 0.00 4.17
328 330 8.227791 ACTAATTTACTCAGCAACGTTAATGTG 58.772 33.333 0.00 6.46 0.00 3.21
329 331 8.319143 ACTAATTTACTCAGCAACGTTAATGT 57.681 30.769 0.00 0.00 0.00 2.71
330 332 8.440059 TGACTAATTTACTCAGCAACGTTAATG 58.560 33.333 0.00 2.75 0.00 1.90
331 333 8.542497 TGACTAATTTACTCAGCAACGTTAAT 57.458 30.769 0.00 0.00 0.00 1.40
332 334 7.654520 ACTGACTAATTTACTCAGCAACGTTAA 59.345 33.333 0.00 0.00 35.75 2.01
333 335 7.149973 ACTGACTAATTTACTCAGCAACGTTA 58.850 34.615 0.00 0.00 35.75 3.18
334 336 5.989777 ACTGACTAATTTACTCAGCAACGTT 59.010 36.000 0.00 0.00 35.75 3.99
335 337 5.539048 ACTGACTAATTTACTCAGCAACGT 58.461 37.500 11.00 0.00 35.75 3.99
336 338 6.467723 AACTGACTAATTTACTCAGCAACG 57.532 37.500 11.00 0.00 35.75 4.10
337 339 7.010023 CGAAACTGACTAATTTACTCAGCAAC 58.990 38.462 11.00 4.66 35.75 4.17
338 340 6.926826 TCGAAACTGACTAATTTACTCAGCAA 59.073 34.615 11.00 0.00 35.75 3.91
339 341 6.452242 TCGAAACTGACTAATTTACTCAGCA 58.548 36.000 11.00 0.00 35.75 4.41
340 342 6.946229 TCGAAACTGACTAATTTACTCAGC 57.054 37.500 11.00 0.00 35.75 4.26
341 343 9.140286 TCATTCGAAACTGACTAATTTACTCAG 57.860 33.333 0.00 10.00 37.93 3.35
342 344 9.653287 ATCATTCGAAACTGACTAATTTACTCA 57.347 29.630 0.00 0.00 0.00 3.41
343 345 9.907576 CATCATTCGAAACTGACTAATTTACTC 57.092 33.333 0.00 0.00 0.00 2.59
344 346 8.883731 CCATCATTCGAAACTGACTAATTTACT 58.116 33.333 0.00 0.00 0.00 2.24
345 347 8.665685 ACCATCATTCGAAACTGACTAATTTAC 58.334 33.333 0.00 0.00 0.00 2.01
346 348 8.664798 CACCATCATTCGAAACTGACTAATTTA 58.335 33.333 0.00 0.00 0.00 1.40
347 349 7.362056 CCACCATCATTCGAAACTGACTAATTT 60.362 37.037 0.00 0.00 0.00 1.82
348 350 6.094048 CCACCATCATTCGAAACTGACTAATT 59.906 38.462 0.00 0.00 0.00 1.40
349 351 5.586243 CCACCATCATTCGAAACTGACTAAT 59.414 40.000 0.00 0.00 0.00 1.73
350 352 4.935205 CCACCATCATTCGAAACTGACTAA 59.065 41.667 0.00 0.00 0.00 2.24
351 353 4.503910 CCACCATCATTCGAAACTGACTA 58.496 43.478 0.00 0.00 0.00 2.59
352 354 3.338249 CCACCATCATTCGAAACTGACT 58.662 45.455 0.00 0.00 0.00 3.41
353 355 2.159517 GCCACCATCATTCGAAACTGAC 60.160 50.000 0.00 0.00 0.00 3.51
354 356 2.083774 GCCACCATCATTCGAAACTGA 58.916 47.619 0.00 2.39 0.00 3.41
355 357 1.202065 CGCCACCATCATTCGAAACTG 60.202 52.381 0.00 0.00 0.00 3.16
356 358 1.086696 CGCCACCATCATTCGAAACT 58.913 50.000 0.00 0.00 0.00 2.66
357 359 0.523335 GCGCCACCATCATTCGAAAC 60.523 55.000 0.00 0.00 0.00 2.78
358 360 0.676466 AGCGCCACCATCATTCGAAA 60.676 50.000 2.29 0.00 0.00 3.46
359 361 0.676466 AAGCGCCACCATCATTCGAA 60.676 50.000 2.29 0.00 0.00 3.71
360 362 1.078497 AAGCGCCACCATCATTCGA 60.078 52.632 2.29 0.00 0.00 3.71
361 363 1.091771 AGAAGCGCCACCATCATTCG 61.092 55.000 2.29 0.00 0.00 3.34
362 364 0.659957 GAGAAGCGCCACCATCATTC 59.340 55.000 2.29 0.00 0.00 2.67
363 365 1.091771 CGAGAAGCGCCACCATCATT 61.092 55.000 2.29 0.00 0.00 2.57
364 366 1.522355 CGAGAAGCGCCACCATCAT 60.522 57.895 2.29 0.00 0.00 2.45
365 367 2.125552 CGAGAAGCGCCACCATCA 60.126 61.111 2.29 0.00 0.00 3.07
376 378 2.948648 CAGCGAGCGAGCGAGAAG 60.949 66.667 1.41 0.00 43.00 2.85
377 379 3.738246 ACAGCGAGCGAGCGAGAA 61.738 61.111 1.41 0.00 43.00 2.87
378 380 4.467062 CACAGCGAGCGAGCGAGA 62.467 66.667 1.41 0.00 43.00 4.04
379 381 4.467062 TCACAGCGAGCGAGCGAG 62.467 66.667 1.41 1.51 43.00 5.03
380 382 4.467062 CTCACAGCGAGCGAGCGA 62.467 66.667 1.41 0.00 43.00 4.93
383 385 4.504916 CCCCTCACAGCGAGCGAG 62.505 72.222 0.00 0.00 40.78 5.03
385 387 4.803426 GTCCCCTCACAGCGAGCG 62.803 72.222 0.00 0.00 40.78 5.03
386 388 4.459089 GGTCCCCTCACAGCGAGC 62.459 72.222 0.00 0.00 40.78 5.03
387 389 2.997315 TGGTCCCCTCACAGCGAG 60.997 66.667 0.00 0.00 41.89 5.03
388 390 3.311110 GTGGTCCCCTCACAGCGA 61.311 66.667 0.00 0.00 35.39 4.93
389 391 2.959484 ATGTGGTCCCCTCACAGCG 61.959 63.158 0.00 0.00 46.49 5.18
390 392 1.377725 CATGTGGTCCCCTCACAGC 60.378 63.158 0.00 0.00 46.49 4.40
391 393 1.300963 CCATGTGGTCCCCTCACAG 59.699 63.158 0.00 0.00 46.49 3.66
393 395 2.677228 CCCATGTGGTCCCCTCAC 59.323 66.667 0.00 0.00 35.82 3.51
394 396 3.338250 GCCCATGTGGTCCCCTCA 61.338 66.667 0.00 0.00 36.04 3.86
395 397 3.017581 AGCCCATGTGGTCCCCTC 61.018 66.667 0.00 0.00 36.04 4.30
396 398 3.341629 CAGCCCATGTGGTCCCCT 61.342 66.667 0.00 0.00 36.04 4.79
397 399 2.693871 ATCAGCCCATGTGGTCCCC 61.694 63.158 0.00 0.00 36.04 4.81
398 400 1.454479 CATCAGCCCATGTGGTCCC 60.454 63.158 0.00 0.00 36.04 4.46
399 401 1.454479 CCATCAGCCCATGTGGTCC 60.454 63.158 0.00 0.00 36.04 4.46
400 402 1.454479 CCCATCAGCCCATGTGGTC 60.454 63.158 0.00 0.00 36.04 4.02
401 403 2.685366 CCCATCAGCCCATGTGGT 59.315 61.111 0.00 0.00 36.04 4.16
402 404 2.836360 GCCCATCAGCCCATGTGG 60.836 66.667 0.00 0.00 32.79 4.17
403 405 3.214123 CGCCCATCAGCCCATGTG 61.214 66.667 0.00 0.00 0.00 3.21
429 431 4.227134 CTCCATCTCCACGGCCGG 62.227 72.222 31.76 18.27 0.00 6.13
430 432 4.899239 GCTCCATCTCCACGGCCG 62.899 72.222 26.86 26.86 0.00 6.13
431 433 4.554036 GGCTCCATCTCCACGGCC 62.554 72.222 0.00 0.00 0.00 6.13
432 434 3.474570 AGGCTCCATCTCCACGGC 61.475 66.667 0.00 0.00 0.00 5.68
433 435 2.303549 GACAGGCTCCATCTCCACGG 62.304 65.000 0.00 0.00 0.00 4.94
434 436 1.142748 GACAGGCTCCATCTCCACG 59.857 63.158 0.00 0.00 0.00 4.94
435 437 1.142748 CGACAGGCTCCATCTCCAC 59.857 63.158 0.00 0.00 0.00 4.02
436 438 2.725312 GCGACAGGCTCCATCTCCA 61.725 63.158 0.00 0.00 39.11 3.86
437 439 2.107953 GCGACAGGCTCCATCTCC 59.892 66.667 0.00 0.00 39.11 3.71
438 440 2.107953 GGCGACAGGCTCCATCTC 59.892 66.667 0.00 0.00 42.94 2.75
439 441 3.842923 CGGCGACAGGCTCCATCT 61.843 66.667 0.00 0.00 42.94 2.90
440 442 4.899239 CCGGCGACAGGCTCCATC 62.899 72.222 9.30 0.00 42.94 3.51
444 446 3.296709 TTTCTCCGGCGACAGGCTC 62.297 63.158 9.30 0.00 42.94 4.70
445 447 3.302347 CTTTCTCCGGCGACAGGCT 62.302 63.158 9.30 0.00 42.94 4.58
446 448 2.815647 CTTTCTCCGGCGACAGGC 60.816 66.667 9.30 0.00 42.51 4.85
447 449 1.738099 CACTTTCTCCGGCGACAGG 60.738 63.158 9.30 0.00 0.00 4.00
448 450 1.738099 CCACTTTCTCCGGCGACAG 60.738 63.158 9.30 6.06 0.00 3.51
449 451 1.180456 TACCACTTTCTCCGGCGACA 61.180 55.000 9.30 0.00 0.00 4.35
450 452 0.458025 CTACCACTTTCTCCGGCGAC 60.458 60.000 9.30 0.00 0.00 5.19
451 453 1.601419 CCTACCACTTTCTCCGGCGA 61.601 60.000 9.30 0.00 0.00 5.54
452 454 1.153628 CCTACCACTTTCTCCGGCG 60.154 63.158 0.00 0.00 0.00 6.46
453 455 0.108281 GTCCTACCACTTTCTCCGGC 60.108 60.000 0.00 0.00 0.00 6.13
454 456 0.535797 GGTCCTACCACTTTCTCCGG 59.464 60.000 0.00 0.00 38.42 5.14
455 457 0.535797 GGGTCCTACCACTTTCTCCG 59.464 60.000 0.00 0.00 41.02 4.63
456 458 0.535797 CGGGTCCTACCACTTTCTCC 59.464 60.000 0.00 0.00 41.02 3.71
457 459 0.108281 GCGGGTCCTACCACTTTCTC 60.108 60.000 0.00 0.00 41.02 2.87
458 460 0.544595 AGCGGGTCCTACCACTTTCT 60.545 55.000 0.00 0.00 41.02 2.52
459 461 0.391263 CAGCGGGTCCTACCACTTTC 60.391 60.000 0.00 0.00 41.02 2.62
460 462 1.677552 CAGCGGGTCCTACCACTTT 59.322 57.895 0.00 0.00 41.02 2.66
461 463 2.955881 GCAGCGGGTCCTACCACTT 61.956 63.158 0.00 0.00 41.02 3.16
462 464 3.391382 GCAGCGGGTCCTACCACT 61.391 66.667 0.00 0.00 41.02 4.00
463 465 4.468689 GGCAGCGGGTCCTACCAC 62.469 72.222 0.00 0.00 41.02 4.16
475 477 3.365265 CTTTCCCACACCGGCAGC 61.365 66.667 0.00 0.00 0.00 5.25
476 478 2.672996 CCTTTCCCACACCGGCAG 60.673 66.667 0.00 0.00 0.00 4.85
477 479 4.278513 CCCTTTCCCACACCGGCA 62.279 66.667 0.00 0.00 0.00 5.69
478 480 2.987355 TTTCCCTTTCCCACACCGGC 62.987 60.000 0.00 0.00 0.00 6.13
479 481 0.893727 CTTTCCCTTTCCCACACCGG 60.894 60.000 0.00 0.00 0.00 5.28
480 482 1.524008 GCTTTCCCTTTCCCACACCG 61.524 60.000 0.00 0.00 0.00 4.94
481 483 1.185618 GGCTTTCCCTTTCCCACACC 61.186 60.000 0.00 0.00 0.00 4.16
482 484 0.178961 AGGCTTTCCCTTTCCCACAC 60.179 55.000 0.00 0.00 43.06 3.82
483 485 0.112412 GAGGCTTTCCCTTTCCCACA 59.888 55.000 0.00 0.00 46.60 4.17
484 486 0.960861 CGAGGCTTTCCCTTTCCCAC 60.961 60.000 0.00 0.00 46.60 4.61
485 487 1.378762 CGAGGCTTTCCCTTTCCCA 59.621 57.895 0.00 0.00 46.60 4.37
486 488 1.378646 CCGAGGCTTTCCCTTTCCC 60.379 63.158 0.00 0.00 46.60 3.97
487 489 0.256177 ATCCGAGGCTTTCCCTTTCC 59.744 55.000 0.00 0.00 46.60 3.13
488 490 1.669604 GATCCGAGGCTTTCCCTTTC 58.330 55.000 0.00 0.00 46.60 2.62
489 491 0.107654 CGATCCGAGGCTTTCCCTTT 60.108 55.000 0.00 0.00 46.60 3.11
490 492 1.522569 CGATCCGAGGCTTTCCCTT 59.477 57.895 0.00 0.00 46.60 3.95
492 494 2.589159 GCGATCCGAGGCTTTCCC 60.589 66.667 0.00 0.00 0.00 3.97
493 495 2.962253 CGCGATCCGAGGCTTTCC 60.962 66.667 0.00 0.00 40.02 3.13
494 496 2.962253 CCGCGATCCGAGGCTTTC 60.962 66.667 8.23 0.00 40.20 2.62
526 528 4.953010 TCCAAAGCTGCTGCCGCA 62.953 61.111 18.14 1.88 45.60 5.69
527 529 3.407046 GATCCAAAGCTGCTGCCGC 62.407 63.158 12.44 8.06 40.80 6.53
528 530 2.768492 GGATCCAAAGCTGCTGCCG 61.768 63.158 12.44 1.16 40.80 5.69
529 531 0.969409 AAGGATCCAAAGCTGCTGCC 60.969 55.000 15.82 0.00 40.80 4.85
530 532 0.455005 GAAGGATCCAAAGCTGCTGC 59.545 55.000 15.82 7.62 40.05 5.25
531 533 1.101331 GGAAGGATCCAAAGCTGCTG 58.899 55.000 15.82 0.00 45.79 4.41
532 534 3.584947 GGAAGGATCCAAAGCTGCT 57.415 52.632 15.82 0.00 45.79 4.24
541 543 1.348775 CCCAGACCCAGGAAGGATCC 61.349 65.000 2.48 2.48 46.98 3.36
542 544 0.621862 ACCCAGACCCAGGAAGGATC 60.622 60.000 0.00 0.00 41.22 3.36
543 545 0.916358 CACCCAGACCCAGGAAGGAT 60.916 60.000 0.00 0.00 41.22 3.24
544 546 1.538876 CACCCAGACCCAGGAAGGA 60.539 63.158 0.00 0.00 41.22 3.36
545 547 2.606587 CCACCCAGACCCAGGAAGG 61.607 68.421 0.00 0.00 37.03 3.46
546 548 3.081554 CCACCCAGACCCAGGAAG 58.918 66.667 0.00 0.00 0.00 3.46
547 549 3.256960 GCCACCCAGACCCAGGAA 61.257 66.667 0.00 0.00 0.00 3.36
550 552 4.704833 CACGCCACCCAGACCCAG 62.705 72.222 0.00 0.00 0.00 4.45
553 555 4.265056 AACCACGCCACCCAGACC 62.265 66.667 0.00 0.00 0.00 3.85
554 556 2.978010 CAACCACGCCACCCAGAC 60.978 66.667 0.00 0.00 0.00 3.51
555 557 3.164977 TCAACCACGCCACCCAGA 61.165 61.111 0.00 0.00 0.00 3.86
556 558 2.978010 GTCAACCACGCCACCCAG 60.978 66.667 0.00 0.00 0.00 4.45
557 559 4.572571 GGTCAACCACGCCACCCA 62.573 66.667 0.00 0.00 35.64 4.51
559 561 4.922026 ACGGTCAACCACGCCACC 62.922 66.667 0.00 0.00 35.14 4.61
560 562 3.645975 CACGGTCAACCACGCCAC 61.646 66.667 0.00 0.00 35.14 5.01
561 563 3.683966 AACACGGTCAACCACGCCA 62.684 57.895 0.00 0.00 35.14 5.69
562 564 1.995646 AAAACACGGTCAACCACGCC 61.996 55.000 0.00 0.00 35.14 5.68
563 565 0.656785 TAAAACACGGTCAACCACGC 59.343 50.000 0.00 0.00 35.14 5.34
564 566 1.262151 CCTAAAACACGGTCAACCACG 59.738 52.381 0.00 0.00 35.14 4.94
565 567 1.605232 CCCTAAAACACGGTCAACCAC 59.395 52.381 0.00 0.00 35.14 4.16
566 568 1.477195 CCCCTAAAACACGGTCAACCA 60.477 52.381 0.00 0.00 35.14 3.67
567 569 1.241165 CCCCTAAAACACGGTCAACC 58.759 55.000 0.00 0.00 0.00 3.77
568 570 1.241165 CCCCCTAAAACACGGTCAAC 58.759 55.000 0.00 0.00 0.00 3.18
569 571 0.537828 GCCCCCTAAAACACGGTCAA 60.538 55.000 0.00 0.00 0.00 3.18
570 572 1.073548 GCCCCCTAAAACACGGTCA 59.926 57.895 0.00 0.00 0.00 4.02
571 573 2.036571 CGCCCCCTAAAACACGGTC 61.037 63.158 0.00 0.00 0.00 4.79
572 574 2.032987 CGCCCCCTAAAACACGGT 59.967 61.111 0.00 0.00 0.00 4.83
573 575 3.436924 GCGCCCCCTAAAACACGG 61.437 66.667 0.00 0.00 0.00 4.94
574 576 2.359478 AGCGCCCCCTAAAACACG 60.359 61.111 2.29 0.00 0.00 4.49
575 577 2.396157 CGAGCGCCCCCTAAAACAC 61.396 63.158 2.29 0.00 0.00 3.32
576 578 2.046700 CGAGCGCCCCCTAAAACA 60.047 61.111 2.29 0.00 0.00 2.83
577 579 2.046604 ACGAGCGCCCCCTAAAAC 60.047 61.111 2.29 0.00 0.00 2.43
578 580 2.046700 CACGAGCGCCCCCTAAAA 60.047 61.111 2.29 0.00 0.00 1.52
579 581 3.315949 ACACGAGCGCCCCCTAAA 61.316 61.111 2.29 0.00 0.00 1.85
580 582 4.077184 CACACGAGCGCCCCCTAA 62.077 66.667 2.29 0.00 0.00 2.69
586 588 4.961511 TCCACACACACGAGCGCC 62.962 66.667 2.29 0.00 0.00 6.53
587 589 2.964925 TTCCACACACACGAGCGC 60.965 61.111 0.00 0.00 0.00 5.92
588 590 1.880796 TGTTCCACACACACGAGCG 60.881 57.895 0.00 0.00 0.00 5.03
589 591 4.118480 TGTTCCACACACACGAGC 57.882 55.556 0.00 0.00 0.00 5.03
598 600 6.364706 GCGAAAATTTATCATTGTGTTCCACA 59.635 34.615 0.00 0.00 43.02 4.17
599 601 6.364706 TGCGAAAATTTATCATTGTGTTCCAC 59.635 34.615 0.00 0.00 34.56 4.02
600 602 6.450545 TGCGAAAATTTATCATTGTGTTCCA 58.549 32.000 0.00 0.00 0.00 3.53
601 603 6.942886 TGCGAAAATTTATCATTGTGTTCC 57.057 33.333 0.00 0.00 0.00 3.62
602 604 8.226543 TCTTGCGAAAATTTATCATTGTGTTC 57.773 30.769 0.00 0.00 0.00 3.18
603 605 7.867403 ACTCTTGCGAAAATTTATCATTGTGTT 59.133 29.630 0.00 0.00 0.00 3.32
604 606 7.370383 ACTCTTGCGAAAATTTATCATTGTGT 58.630 30.769 0.00 0.00 0.00 3.72
605 607 7.801547 ACTCTTGCGAAAATTTATCATTGTG 57.198 32.000 0.00 0.00 0.00 3.33
606 608 9.906660 TTAACTCTTGCGAAAATTTATCATTGT 57.093 25.926 0.00 0.00 0.00 2.71
610 612 9.997482 GGTATTAACTCTTGCGAAAATTTATCA 57.003 29.630 0.00 0.00 0.00 2.15
614 616 9.444600 TCTAGGTATTAACTCTTGCGAAAATTT 57.555 29.630 0.00 0.00 0.00 1.82
615 617 9.099454 CTCTAGGTATTAACTCTTGCGAAAATT 57.901 33.333 0.00 0.00 0.00 1.82
616 618 7.711339 CCTCTAGGTATTAACTCTTGCGAAAAT 59.289 37.037 0.00 0.00 0.00 1.82
617 619 7.039882 CCTCTAGGTATTAACTCTTGCGAAAA 58.960 38.462 0.00 0.00 0.00 2.29
618 620 6.570692 CCTCTAGGTATTAACTCTTGCGAAA 58.429 40.000 0.00 0.00 0.00 3.46
619 621 6.145338 CCTCTAGGTATTAACTCTTGCGAA 57.855 41.667 0.00 0.00 0.00 4.70
620 622 5.769484 CCTCTAGGTATTAACTCTTGCGA 57.231 43.478 0.00 0.00 0.00 5.10
632 634 9.944026 TATGAAACCGTTCCCACCTCTAGGTAT 62.944 44.444 0.25 0.00 38.57 2.73
633 635 6.838485 TGAAACCGTTCCCACCTCTAGGTA 62.838 50.000 0.25 0.00 38.57 3.08
635 637 0.981943 AAACCGTTCCCACCTCTAGG 59.018 55.000 0.00 0.00 42.17 3.02
636 638 1.621814 TGAAACCGTTCCCACCTCTAG 59.378 52.381 0.00 0.00 32.28 2.43
640 642 1.700739 TGTATGAAACCGTTCCCACCT 59.299 47.619 0.00 0.00 32.28 4.00
719 721 0.318869 TCGCGTCCGAAGCTGTTTTA 60.319 50.000 5.77 0.00 41.17 1.52
729 731 3.115892 GCCAAATGTCGCGTCCGA 61.116 61.111 5.77 0.00 42.01 4.55
730 732 2.749865 ATGCCAAATGTCGCGTCCG 61.750 57.895 5.77 0.00 0.00 4.79
1515 1518 8.038944 GGTCAGATCAACCTATAACAACTACAA 58.961 37.037 9.45 0.00 33.78 2.41
2250 2442 1.501582 ACTACCTGAAGATCCCTGGC 58.498 55.000 8.07 0.00 0.00 4.85
2290 2483 5.331876 AGAATGTACTAGGTGCTCACTTC 57.668 43.478 0.00 0.00 0.00 3.01
2488 2745 6.702716 AGATGCAGAAGAGTAGTTAGGTAC 57.297 41.667 0.00 0.00 0.00 3.34
2521 2778 4.395542 GCTCAAGAACTGAAGAAGATGCAT 59.604 41.667 0.00 0.00 32.17 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.