Multiple sequence alignment - TraesCS1A01G112100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G112100 | chr1A | 100.000 | 5263 | 0 | 0 | 1 | 5263 | 113862478 | 113857216 | 0.000000e+00 | 9720 |
1 | TraesCS1A01G112100 | chr1D | 93.067 | 4630 | 188 | 38 | 1 | 4536 | 109977266 | 109972676 | 0.000000e+00 | 6649 |
2 | TraesCS1A01G112100 | chr1D | 96.923 | 260 | 8 | 0 | 4574 | 4833 | 109972678 | 109972419 | 2.250000e-118 | 436 |
3 | TraesCS1A01G112100 | chr1D | 96.341 | 82 | 3 | 0 | 4826 | 4907 | 109972398 | 109972317 | 9.190000e-28 | 135 |
4 | TraesCS1A01G112100 | chr1B | 92.365 | 4034 | 202 | 43 | 1 | 3946 | 166595941 | 166591926 | 0.000000e+00 | 5646 |
5 | TraesCS1A01G112100 | chr1B | 91.141 | 587 | 25 | 10 | 4266 | 4833 | 166591379 | 166590801 | 0.000000e+00 | 771 |
6 | TraesCS1A01G112100 | chr1B | 93.824 | 340 | 16 | 4 | 3946 | 4283 | 166591893 | 166591557 | 1.690000e-139 | 507 |
7 | TraesCS1A01G112100 | chr6B | 99.155 | 355 | 3 | 0 | 4909 | 5263 | 687907284 | 687906930 | 1.600000e-179 | 640 |
8 | TraesCS1A01G112100 | chr2B | 98.619 | 362 | 3 | 2 | 4902 | 5263 | 141550431 | 141550790 | 1.600000e-179 | 640 |
9 | TraesCS1A01G112100 | chr7B | 99.155 | 355 | 1 | 1 | 4909 | 5263 | 662825654 | 662825302 | 5.750000e-179 | 638 |
10 | TraesCS1A01G112100 | chr5B | 98.883 | 358 | 2 | 1 | 4906 | 5263 | 423669816 | 423670171 | 5.750000e-179 | 638 |
11 | TraesCS1A01G112100 | chr5B | 98.873 | 355 | 2 | 1 | 4909 | 5263 | 423686617 | 423686969 | 2.670000e-177 | 632 |
12 | TraesCS1A01G112100 | chr5B | 98.873 | 355 | 2 | 1 | 4909 | 5263 | 430228624 | 430228272 | 2.670000e-177 | 632 |
13 | TraesCS1A01G112100 | chr5A | 99.155 | 355 | 1 | 1 | 4909 | 5263 | 688028822 | 688029174 | 5.750000e-179 | 638 |
14 | TraesCS1A01G112100 | chr3A | 98.883 | 358 | 2 | 1 | 4906 | 5263 | 494878983 | 494879338 | 5.750000e-179 | 638 |
15 | TraesCS1A01G112100 | chr3A | 89.286 | 140 | 15 | 0 | 1324 | 1463 | 63065925 | 63066064 | 5.420000e-40 | 176 |
16 | TraesCS1A01G112100 | chr3A | 77.303 | 304 | 58 | 10 | 2580 | 2873 | 63067031 | 63067333 | 9.060000e-38 | 169 |
17 | TraesCS1A01G112100 | chr4B | 98.343 | 362 | 3 | 2 | 4902 | 5263 | 337992190 | 337992548 | 2.670000e-177 | 632 |
18 | TraesCS1A01G112100 | chr7A | 93.469 | 245 | 16 | 0 | 4064 | 4308 | 149286837 | 149286593 | 1.080000e-96 | 364 |
19 | TraesCS1A01G112100 | chr7A | 96.203 | 79 | 3 | 0 | 4296 | 4374 | 149285001 | 149284923 | 4.280000e-26 | 130 |
20 | TraesCS1A01G112100 | chr3B | 79.208 | 303 | 51 | 9 | 2580 | 2873 | 79121444 | 79121743 | 3.210000e-47 | 200 |
21 | TraesCS1A01G112100 | chr3B | 89.286 | 140 | 15 | 0 | 1324 | 1463 | 79120327 | 79120466 | 5.420000e-40 | 176 |
22 | TraesCS1A01G112100 | chr3D | 78.808 | 302 | 53 | 9 | 2580 | 2873 | 49639510 | 49639808 | 5.380000e-45 | 193 |
23 | TraesCS1A01G112100 | chr3D | 89.286 | 140 | 15 | 0 | 1324 | 1463 | 49638360 | 49638499 | 5.420000e-40 | 176 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G112100 | chr1A | 113857216 | 113862478 | 5262 | True | 9720.000000 | 9720 | 100.000000 | 1 | 5263 | 1 | chr1A.!!$R1 | 5262 |
1 | TraesCS1A01G112100 | chr1D | 109972317 | 109977266 | 4949 | True | 2406.666667 | 6649 | 95.443667 | 1 | 4907 | 3 | chr1D.!!$R1 | 4906 |
2 | TraesCS1A01G112100 | chr1B | 166590801 | 166595941 | 5140 | True | 2308.000000 | 5646 | 92.443333 | 1 | 4833 | 3 | chr1B.!!$R1 | 4832 |
3 | TraesCS1A01G112100 | chr7A | 149284923 | 149286837 | 1914 | True | 247.000000 | 364 | 94.836000 | 4064 | 4374 | 2 | chr7A.!!$R1 | 310 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
141 | 146 | 0.107703 | TGCCAGATTCCACCATCGTC | 60.108 | 55.0 | 0.00 | 0.0 | 0.00 | 4.20 | F |
379 | 384 | 0.109342 | GAATGATGGCGGGATCCAGT | 59.891 | 55.0 | 15.23 | 0.0 | 39.89 | 4.00 | F |
967 | 1007 | 0.179100 | CGAGGCGGCCATCCATATAG | 60.179 | 60.0 | 23.09 | 0.0 | 0.00 | 1.31 | F |
1578 | 1620 | 0.534877 | TCTTCGGTTGTGCACATGCT | 60.535 | 50.0 | 22.39 | 0.0 | 42.66 | 3.79 | F |
2836 | 2941 | 0.749454 | CCATACTGTCCTTGCTGGCC | 60.749 | 60.0 | 0.00 | 0.0 | 35.26 | 5.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1558 | 1600 | 0.310543 | GCATGTGCACAACCGAAGAA | 59.689 | 50.000 | 25.72 | 0.00 | 41.59 | 2.52 | R |
1811 | 1876 | 1.003580 | CCAGGACATGCTACACAACCT | 59.996 | 52.381 | 0.00 | 0.00 | 32.91 | 3.50 | R |
1874 | 1939 | 1.563111 | CAGGCAGCACAAACAAACAG | 58.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 | R |
3237 | 3344 | 1.113788 | AGTTTGCCAAAGCTGCTTCA | 58.886 | 45.000 | 16.28 | 6.76 | 40.80 | 3.02 | R |
4679 | 6657 | 0.260230 | TTTCCACAAGGGGCTGTTGA | 59.740 | 50.000 | 6.41 | 0.00 | 37.22 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 23 | 2.436911 | ACCCGGTTTGTTCTTCTACAGT | 59.563 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
31 | 33 | 9.269453 | GTTTGTTCTTCTACAGTTGTAGGTTAT | 57.731 | 33.333 | 16.86 | 0.00 | 46.01 | 1.89 |
35 | 37 | 9.356433 | GTTCTTCTACAGTTGTAGGTTATCTTC | 57.644 | 37.037 | 16.86 | 1.30 | 46.01 | 2.87 |
49 | 51 | 9.807649 | GTAGGTTATCTTCGTTGGTAGATTTTA | 57.192 | 33.333 | 0.00 | 0.00 | 33.09 | 1.52 |
53 | 55 | 9.845305 | GTTATCTTCGTTGGTAGATTTTAATCG | 57.155 | 33.333 | 0.00 | 0.00 | 40.35 | 3.34 |
68 | 70 | 2.403252 | AATCGGTTCATCTTCGGCTT | 57.597 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
82 | 84 | 0.172578 | CGGCTTCGGTAGTGATGACA | 59.827 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
88 | 90 | 1.964933 | TCGGTAGTGATGACAACACCA | 59.035 | 47.619 | 11.83 | 0.00 | 38.82 | 4.17 |
94 | 99 | 2.151202 | GTGATGACAACACCACCGAAT | 58.849 | 47.619 | 4.56 | 0.00 | 34.66 | 3.34 |
95 | 100 | 3.007506 | AGTGATGACAACACCACCGAATA | 59.992 | 43.478 | 11.83 | 0.00 | 41.18 | 1.75 |
96 | 101 | 3.749088 | GTGATGACAACACCACCGAATAA | 59.251 | 43.478 | 4.56 | 0.00 | 34.66 | 1.40 |
114 | 119 | 5.065218 | CGAATAAGGTGTCTCCAAATCCTTG | 59.935 | 44.000 | 0.00 | 0.00 | 38.68 | 3.61 |
124 | 129 | 2.562298 | TCCAAATCCTTGACCAACATGC | 59.438 | 45.455 | 0.00 | 0.00 | 34.14 | 4.06 |
141 | 146 | 0.107703 | TGCCAGATTCCACCATCGTC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
156 | 161 | 2.119671 | TCGTCGACGAATCCATGATG | 57.880 | 50.000 | 36.25 | 5.24 | 46.30 | 3.07 |
157 | 162 | 1.673920 | TCGTCGACGAATCCATGATGA | 59.326 | 47.619 | 36.25 | 10.84 | 46.30 | 2.92 |
162 | 167 | 4.271049 | GTCGACGAATCCATGATGATGTTT | 59.729 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
188 | 193 | 4.612412 | GGGGTCAACGTGGCGACA | 62.612 | 66.667 | 13.18 | 0.00 | 33.66 | 4.35 |
190 | 195 | 2.028484 | GGTCAACGTGGCGACAGA | 59.972 | 61.111 | 13.18 | 0.00 | 44.46 | 3.41 |
209 | 214 | 5.729510 | ACAGAGATGACCTAGAGCTTTTTC | 58.270 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
214 | 219 | 3.248024 | TGACCTAGAGCTTTTTCCTCCA | 58.752 | 45.455 | 0.00 | 0.00 | 0.00 | 3.86 |
215 | 220 | 3.650942 | TGACCTAGAGCTTTTTCCTCCAA | 59.349 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
220 | 225 | 1.197949 | GAGCTTTTTCCTCCAACTCGC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
221 | 226 | 0.241213 | GCTTTTTCCTCCAACTCGCC | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
223 | 228 | 2.874457 | GCTTTTTCCTCCAACTCGCCTA | 60.874 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
242 | 247 | 4.519730 | GCCTATCGAGGTAATGTGTACTCT | 59.480 | 45.833 | 0.00 | 0.00 | 45.78 | 3.24 |
354 | 359 | 0.468226 | TGCTCTCGTGAAGGGTTTGT | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
363 | 368 | 1.219213 | TGAAGGGTTTGTGGGTGGAAT | 59.781 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
369 | 374 | 1.066929 | GTTTGTGGGTGGAATGATGGC | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
372 | 377 | 2.519302 | GGGTGGAATGATGGCGGG | 60.519 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
373 | 378 | 2.595095 | GGTGGAATGATGGCGGGA | 59.405 | 61.111 | 0.00 | 0.00 | 0.00 | 5.14 |
376 | 381 | 0.890996 | GTGGAATGATGGCGGGATCC | 60.891 | 60.000 | 1.92 | 1.92 | 0.00 | 3.36 |
377 | 382 | 1.351850 | TGGAATGATGGCGGGATCCA | 61.352 | 55.000 | 15.23 | 0.00 | 40.97 | 3.41 |
378 | 383 | 0.607489 | GGAATGATGGCGGGATCCAG | 60.607 | 60.000 | 15.23 | 11.38 | 39.89 | 3.86 |
379 | 384 | 0.109342 | GAATGATGGCGGGATCCAGT | 59.891 | 55.000 | 15.23 | 0.00 | 39.89 | 4.00 |
381 | 386 | 2.060567 | ATGATGGCGGGATCCAGTGG | 62.061 | 60.000 | 15.23 | 1.40 | 39.89 | 4.00 |
382 | 387 | 2.692368 | ATGGCGGGATCCAGTGGT | 60.692 | 61.111 | 15.23 | 0.00 | 39.89 | 4.16 |
383 | 388 | 2.666596 | GATGGCGGGATCCAGTGGTC | 62.667 | 65.000 | 15.23 | 6.15 | 39.89 | 4.02 |
400 | 406 | 1.080093 | TCCCTCGACGACATTGTGC | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 4.57 |
403 | 409 | 2.431771 | TCGACGACATTGTGCGGG | 60.432 | 61.111 | 0.00 | 0.00 | 0.00 | 6.13 |
409 | 415 | 1.303317 | GACATTGTGCGGGGAAGGT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
417 | 423 | 1.831286 | GCGGGGAAGGTAGATCCGA | 60.831 | 63.158 | 4.15 | 0.00 | 42.94 | 4.55 |
422 | 428 | 1.619332 | GGGAAGGTAGATCCGATGGAC | 59.381 | 57.143 | 0.00 | 0.00 | 41.99 | 4.02 |
503 | 517 | 6.596888 | TCTTCATCGATTCTCAAAGCTTTGAT | 59.403 | 34.615 | 35.40 | 24.25 | 45.26 | 2.57 |
507 | 521 | 4.996758 | TCGATTCTCAAAGCTTTGATGTGA | 59.003 | 37.500 | 35.40 | 27.20 | 45.26 | 3.58 |
508 | 522 | 5.084722 | CGATTCTCAAAGCTTTGATGTGAC | 58.915 | 41.667 | 35.40 | 24.26 | 45.26 | 3.67 |
509 | 523 | 4.472691 | TTCTCAAAGCTTTGATGTGACG | 57.527 | 40.909 | 35.40 | 24.40 | 45.26 | 4.35 |
510 | 524 | 2.807967 | TCTCAAAGCTTTGATGTGACGG | 59.192 | 45.455 | 35.40 | 23.78 | 45.26 | 4.79 |
511 | 525 | 2.807967 | CTCAAAGCTTTGATGTGACGGA | 59.192 | 45.455 | 35.40 | 15.09 | 45.26 | 4.69 |
512 | 526 | 2.807967 | TCAAAGCTTTGATGTGACGGAG | 59.192 | 45.455 | 32.86 | 7.96 | 41.88 | 4.63 |
530 | 544 | 1.166531 | AGCACCGACAGTTCTTTGGC | 61.167 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
533 | 547 | 0.468226 | ACCGACAGTTCTTTGGCTGA | 59.532 | 50.000 | 0.00 | 0.00 | 36.62 | 4.26 |
551 | 565 | 3.848726 | CTGAAGGAGCTTGTCTCTTCTC | 58.151 | 50.000 | 12.43 | 0.00 | 41.60 | 2.87 |
608 | 628 | 1.228552 | CCCCAGGGACCTTGTTGTG | 60.229 | 63.158 | 7.25 | 0.00 | 37.50 | 3.33 |
656 | 676 | 1.302752 | TCTGTGCCAGGACATGTGC | 60.303 | 57.895 | 9.70 | 9.70 | 31.51 | 4.57 |
686 | 706 | 3.181517 | CGTCGGTTCGAGTATGTTCTACA | 60.182 | 47.826 | 0.00 | 0.00 | 36.23 | 2.74 |
690 | 710 | 4.683832 | GGTTCGAGTATGTTCTACAGCAT | 58.316 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
709 | 729 | 4.067016 | CGTGGCGCGTGTTGTACC | 62.067 | 66.667 | 13.13 | 0.00 | 35.54 | 3.34 |
711 | 731 | 2.109387 | TGGCGCGTGTTGTACCTT | 59.891 | 55.556 | 8.43 | 0.00 | 0.00 | 3.50 |
825 | 865 | 2.398754 | TGAGACAAGAGGAAGGTGGA | 57.601 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
934 | 974 | 3.420839 | AATTGCCGCTTCCTTTAATCG | 57.579 | 42.857 | 0.00 | 0.00 | 0.00 | 3.34 |
967 | 1007 | 0.179100 | CGAGGCGGCCATCCATATAG | 60.179 | 60.000 | 23.09 | 0.00 | 0.00 | 1.31 |
1144 | 1184 | 4.873129 | CCCAGATCCACCGACGCG | 62.873 | 72.222 | 3.53 | 3.53 | 0.00 | 6.01 |
1172 | 1213 | 0.615544 | TATGTTTCGACCCCTCCCGT | 60.616 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1282 | 1323 | 1.908483 | GGTCTGATCGGGAAGGCTT | 59.092 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
1451 | 1492 | 1.219393 | CTCCCTCGGCTTCACCTTC | 59.781 | 63.158 | 0.00 | 0.00 | 35.61 | 3.46 |
1502 | 1543 | 3.432252 | CCAGCTTCTTGATTCGTTACGTT | 59.568 | 43.478 | 4.24 | 0.00 | 0.00 | 3.99 |
1558 | 1600 | 1.605753 | TCTATCTATGCGTGCTCCGT | 58.394 | 50.000 | 0.00 | 0.00 | 39.32 | 4.69 |
1563 | 1605 | 0.924090 | CTATGCGTGCTCCGTTCTTC | 59.076 | 55.000 | 0.00 | 0.00 | 39.32 | 2.87 |
1578 | 1620 | 0.534877 | TCTTCGGTTGTGCACATGCT | 60.535 | 50.000 | 22.39 | 0.00 | 42.66 | 3.79 |
1604 | 1646 | 6.511767 | CGGTTCAGATTATTAACACCAGATGC | 60.512 | 42.308 | 0.00 | 0.00 | 0.00 | 3.91 |
1656 | 1711 | 9.691362 | ATTGAATTTGGTGTGTTTGATAACTAC | 57.309 | 29.630 | 0.00 | 0.00 | 35.24 | 2.73 |
1657 | 1712 | 8.458573 | TGAATTTGGTGTGTTTGATAACTACT | 57.541 | 30.769 | 0.00 | 0.00 | 35.24 | 2.57 |
1658 | 1713 | 8.349245 | TGAATTTGGTGTGTTTGATAACTACTG | 58.651 | 33.333 | 0.00 | 0.00 | 35.24 | 2.74 |
1659 | 1714 | 7.817418 | ATTTGGTGTGTTTGATAACTACTGT | 57.183 | 32.000 | 0.00 | 0.00 | 35.24 | 3.55 |
1660 | 1715 | 8.911918 | ATTTGGTGTGTTTGATAACTACTGTA | 57.088 | 30.769 | 0.00 | 0.00 | 35.24 | 2.74 |
1781 | 1836 | 9.989394 | GTGAAAGCTTTGATTATTTTTCGTAAC | 57.011 | 29.630 | 18.30 | 0.00 | 0.00 | 2.50 |
1874 | 1939 | 5.278758 | GCTTGACAGATGGGAGTAGTATCTC | 60.279 | 48.000 | 0.00 | 0.00 | 0.00 | 2.75 |
1919 | 1984 | 7.201556 | GGAGTGTATGTACATGTGATGTTCAAG | 60.202 | 40.741 | 18.81 | 0.00 | 42.48 | 3.02 |
1982 | 2074 | 5.556355 | TCTGAATGTTGCTTATGCTGAAG | 57.444 | 39.130 | 1.96 | 0.00 | 40.48 | 3.02 |
2012 | 2104 | 9.770097 | GAATGAGAATATGAGATACCAGTGAAA | 57.230 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
2108 | 2200 | 2.486982 | CACTTTCTGCTCCCTTCATGTG | 59.513 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
2297 | 2389 | 2.835156 | TCGTACCATTGTCAGGATTCCA | 59.165 | 45.455 | 5.29 | 0.00 | 0.00 | 3.53 |
2338 | 2430 | 7.334421 | CAGTTCTGCACTTACTACATTTGGTAT | 59.666 | 37.037 | 0.00 | 0.00 | 30.92 | 2.73 |
2392 | 2489 | 6.529463 | TGTAACAAACTTTACTTCCGCTAC | 57.471 | 37.500 | 0.00 | 0.00 | 33.73 | 3.58 |
2564 | 2666 | 4.576463 | GCACTAATCAATCCACCTAACTGG | 59.424 | 45.833 | 0.00 | 0.00 | 42.93 | 4.00 |
2786 | 2891 | 2.115911 | GGTGTCGGTGTTGCAACCA | 61.116 | 57.895 | 26.14 | 13.69 | 40.53 | 3.67 |
2836 | 2941 | 0.749454 | CCATACTGTCCTTGCTGGCC | 60.749 | 60.000 | 0.00 | 0.00 | 35.26 | 5.36 |
2905 | 3010 | 1.713597 | GCCTTTTCTTGGCCAAATCG | 58.286 | 50.000 | 20.91 | 8.35 | 44.32 | 3.34 |
2992 | 3098 | 2.287915 | GCACTTGACGTGATGACTGTTT | 59.712 | 45.455 | 0.00 | 0.00 | 46.81 | 2.83 |
3022 | 3128 | 8.186821 | ACTACTCTGTTACATTCACGTATTACC | 58.813 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
3026 | 3133 | 4.863689 | TGTTACATTCACGTATTACCACCG | 59.136 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3031 | 3138 | 5.239087 | ACATTCACGTATTACCACCGTTTTT | 59.761 | 36.000 | 0.00 | 0.00 | 31.46 | 1.94 |
3034 | 3141 | 4.574013 | TCACGTATTACCACCGTTTTTGTT | 59.426 | 37.500 | 0.00 | 0.00 | 31.46 | 2.83 |
3042 | 3149 | 2.255316 | CACCGTTTTTGTTGTGTGGTC | 58.745 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
3201 | 3308 | 4.773013 | TCCTGACTAACCAAAACGTCTTT | 58.227 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3237 | 3344 | 5.637810 | CACATCTAACGTTGTGGTAAGTCAT | 59.362 | 40.000 | 11.99 | 0.00 | 39.61 | 3.06 |
3300 | 3407 | 5.163205 | TGTTTCTGATTCTCCTCTTGTTCCA | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
3439 | 3546 | 0.803117 | GCCTAGTTTTGACCTTCGGC | 59.197 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
3460 | 3567 | 2.900122 | ACGTTTTGCTTCATGATCCG | 57.100 | 45.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3534 | 3641 | 9.413048 | GGTACTATATTCATACTTCTGCTCAAC | 57.587 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
3697 | 3804 | 9.654663 | GTTTATAAATCCCTATGCGTTCTCTAT | 57.345 | 33.333 | 0.31 | 0.00 | 0.00 | 1.98 |
3747 | 3854 | 5.413833 | GCACCTTTGATCTCTGATTCTTTGA | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
3831 | 3938 | 2.863809 | ACTCAAGGGCGTGAGAATTTT | 58.136 | 42.857 | 19.99 | 0.00 | 46.76 | 1.82 |
3994 | 4156 | 3.855689 | ACCTTCCAAAATTGCAGATCG | 57.144 | 42.857 | 0.00 | 0.00 | 0.00 | 3.69 |
4067 | 4229 | 6.706270 | TCCAAATCTTCTCACTGTAACTTCAC | 59.294 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
4374 | 6335 | 3.251487 | GTGTACACGGTGCCTGTTTTTAT | 59.749 | 43.478 | 10.84 | 0.00 | 0.00 | 1.40 |
4375 | 6336 | 4.451774 | GTGTACACGGTGCCTGTTTTTATA | 59.548 | 41.667 | 10.84 | 0.00 | 0.00 | 0.98 |
4434 | 6405 | 8.213518 | ACATTGAAATCACACAGGTCATATAC | 57.786 | 34.615 | 0.00 | 0.00 | 0.00 | 1.47 |
4486 | 6457 | 8.292448 | CACATACTTCAGTTTGCTAAATGTTCT | 58.708 | 33.333 | 8.12 | 0.00 | 31.55 | 3.01 |
4542 | 6513 | 5.933790 | TCATTTAACTCGCCATGTTGTAAC | 58.066 | 37.500 | 0.00 | 0.00 | 0.00 | 2.50 |
4554 | 6525 | 3.530265 | TGTTGTAACTGTCAGTTCCGT | 57.470 | 42.857 | 21.40 | 0.58 | 39.51 | 4.69 |
4563 | 6534 | 3.002791 | CTGTCAGTTCCGTACAATGCAT | 58.997 | 45.455 | 0.00 | 0.00 | 0.00 | 3.96 |
4570 | 6541 | 2.217750 | TCCGTACAATGCATGCATACC | 58.782 | 47.619 | 32.36 | 18.43 | 35.31 | 2.73 |
4691 | 6669 | 3.279434 | GTCGATAATTCAACAGCCCCTT | 58.721 | 45.455 | 0.00 | 0.00 | 0.00 | 3.95 |
4693 | 6671 | 3.016736 | CGATAATTCAACAGCCCCTTGT | 58.983 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
4847 | 6854 | 4.248174 | TGAAAGGATATCAATGGGCACA | 57.752 | 40.909 | 4.83 | 0.00 | 0.00 | 4.57 |
4852 | 6859 | 2.358898 | GGATATCAATGGGCACACACAC | 59.641 | 50.000 | 4.83 | 0.00 | 0.00 | 3.82 |
4864 | 6871 | 3.175929 | GCACACACACAACTAAACAACC | 58.824 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
4907 | 6914 | 5.597806 | CGGTGTCCAGATAAGTTAAGCATA | 58.402 | 41.667 | 0.00 | 0.00 | 0.00 | 3.14 |
4908 | 6915 | 6.223852 | CGGTGTCCAGATAAGTTAAGCATAT | 58.776 | 40.000 | 0.00 | 0.00 | 0.00 | 1.78 |
4909 | 6916 | 6.146184 | CGGTGTCCAGATAAGTTAAGCATATG | 59.854 | 42.308 | 0.00 | 0.00 | 0.00 | 1.78 |
4910 | 6917 | 7.217200 | GGTGTCCAGATAAGTTAAGCATATGA | 58.783 | 38.462 | 6.97 | 0.00 | 0.00 | 2.15 |
4911 | 6918 | 7.171678 | GGTGTCCAGATAAGTTAAGCATATGAC | 59.828 | 40.741 | 6.97 | 0.00 | 0.00 | 3.06 |
4912 | 6919 | 6.923508 | TGTCCAGATAAGTTAAGCATATGACG | 59.076 | 38.462 | 6.97 | 0.00 | 0.00 | 4.35 |
4913 | 6920 | 5.926542 | TCCAGATAAGTTAAGCATATGACGC | 59.073 | 40.000 | 6.97 | 0.00 | 0.00 | 5.19 |
4914 | 6921 | 5.120830 | CCAGATAAGTTAAGCATATGACGCC | 59.879 | 44.000 | 6.97 | 0.00 | 0.00 | 5.68 |
4915 | 6922 | 5.120830 | CAGATAAGTTAAGCATATGACGCCC | 59.879 | 44.000 | 6.97 | 0.00 | 0.00 | 6.13 |
4916 | 6923 | 1.865865 | AGTTAAGCATATGACGCCCG | 58.134 | 50.000 | 6.97 | 0.00 | 0.00 | 6.13 |
4917 | 6924 | 0.865769 | GTTAAGCATATGACGCCCGG | 59.134 | 55.000 | 6.97 | 0.00 | 0.00 | 5.73 |
4918 | 6925 | 0.753867 | TTAAGCATATGACGCCCGGA | 59.246 | 50.000 | 0.73 | 0.00 | 0.00 | 5.14 |
4919 | 6926 | 0.973632 | TAAGCATATGACGCCCGGAT | 59.026 | 50.000 | 0.73 | 0.00 | 0.00 | 4.18 |
4920 | 6927 | 0.973632 | AAGCATATGACGCCCGGATA | 59.026 | 50.000 | 0.73 | 0.00 | 0.00 | 2.59 |
4921 | 6928 | 0.973632 | AGCATATGACGCCCGGATAA | 59.026 | 50.000 | 0.73 | 0.00 | 0.00 | 1.75 |
4922 | 6929 | 1.555075 | AGCATATGACGCCCGGATAAT | 59.445 | 47.619 | 0.73 | 0.00 | 0.00 | 1.28 |
4923 | 6930 | 1.933853 | GCATATGACGCCCGGATAATC | 59.066 | 52.381 | 0.73 | 0.00 | 0.00 | 1.75 |
4924 | 6931 | 2.676750 | GCATATGACGCCCGGATAATCA | 60.677 | 50.000 | 0.73 | 0.90 | 0.00 | 2.57 |
4925 | 6932 | 3.595173 | CATATGACGCCCGGATAATCAA | 58.405 | 45.455 | 0.73 | 0.00 | 0.00 | 2.57 |
4926 | 6933 | 2.169832 | ATGACGCCCGGATAATCAAG | 57.830 | 50.000 | 0.73 | 0.00 | 0.00 | 3.02 |
4927 | 6934 | 0.531974 | TGACGCCCGGATAATCAAGC | 60.532 | 55.000 | 0.73 | 0.00 | 0.00 | 4.01 |
4928 | 6935 | 0.249911 | GACGCCCGGATAATCAAGCT | 60.250 | 55.000 | 0.73 | 0.00 | 0.00 | 3.74 |
4929 | 6936 | 1.000506 | GACGCCCGGATAATCAAGCTA | 59.999 | 52.381 | 0.73 | 0.00 | 0.00 | 3.32 |
4930 | 6937 | 1.270147 | ACGCCCGGATAATCAAGCTAC | 60.270 | 52.381 | 0.73 | 0.00 | 0.00 | 3.58 |
4931 | 6938 | 1.270094 | CGCCCGGATAATCAAGCTACA | 60.270 | 52.381 | 0.73 | 0.00 | 0.00 | 2.74 |
4932 | 6939 | 2.417719 | GCCCGGATAATCAAGCTACAG | 58.582 | 52.381 | 0.73 | 0.00 | 0.00 | 2.74 |
4933 | 6940 | 2.224305 | GCCCGGATAATCAAGCTACAGT | 60.224 | 50.000 | 0.73 | 0.00 | 0.00 | 3.55 |
4934 | 6941 | 3.006537 | GCCCGGATAATCAAGCTACAGTA | 59.993 | 47.826 | 0.73 | 0.00 | 0.00 | 2.74 |
4935 | 6942 | 4.502604 | GCCCGGATAATCAAGCTACAGTAA | 60.503 | 45.833 | 0.73 | 0.00 | 0.00 | 2.24 |
4936 | 6943 | 4.989168 | CCCGGATAATCAAGCTACAGTAAC | 59.011 | 45.833 | 0.73 | 0.00 | 0.00 | 2.50 |
4937 | 6944 | 4.989168 | CCGGATAATCAAGCTACAGTAACC | 59.011 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
4938 | 6945 | 5.221461 | CCGGATAATCAAGCTACAGTAACCT | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 3.50 |
4939 | 6946 | 5.921408 | CGGATAATCAAGCTACAGTAACCTC | 59.079 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4940 | 6947 | 6.239064 | CGGATAATCAAGCTACAGTAACCTCT | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 3.69 |
4941 | 6948 | 6.926272 | GGATAATCAAGCTACAGTAACCTCTG | 59.074 | 42.308 | 0.00 | 0.00 | 40.80 | 3.35 |
4942 | 6949 | 3.594603 | TCAAGCTACAGTAACCTCTGC | 57.405 | 47.619 | 0.00 | 0.00 | 38.84 | 4.26 |
4943 | 6950 | 3.165875 | TCAAGCTACAGTAACCTCTGCT | 58.834 | 45.455 | 0.00 | 0.00 | 38.84 | 4.24 |
4944 | 6951 | 4.341487 | TCAAGCTACAGTAACCTCTGCTA | 58.659 | 43.478 | 0.00 | 0.00 | 38.84 | 3.49 |
4945 | 6952 | 4.770531 | TCAAGCTACAGTAACCTCTGCTAA | 59.229 | 41.667 | 0.00 | 0.00 | 38.84 | 3.09 |
4946 | 6953 | 5.422331 | TCAAGCTACAGTAACCTCTGCTAAT | 59.578 | 40.000 | 0.00 | 0.00 | 38.84 | 1.73 |
4947 | 6954 | 5.269505 | AGCTACAGTAACCTCTGCTAATG | 57.730 | 43.478 | 0.00 | 0.00 | 38.84 | 1.90 |
4948 | 6955 | 4.956700 | AGCTACAGTAACCTCTGCTAATGA | 59.043 | 41.667 | 0.00 | 0.00 | 38.84 | 2.57 |
4949 | 6956 | 5.600484 | AGCTACAGTAACCTCTGCTAATGAT | 59.400 | 40.000 | 0.00 | 0.00 | 38.84 | 2.45 |
4950 | 6957 | 5.694006 | GCTACAGTAACCTCTGCTAATGATG | 59.306 | 44.000 | 0.00 | 0.00 | 38.84 | 3.07 |
4951 | 6958 | 4.446371 | ACAGTAACCTCTGCTAATGATGC | 58.554 | 43.478 | 0.00 | 0.00 | 38.84 | 3.91 |
4952 | 6959 | 3.812053 | CAGTAACCTCTGCTAATGATGCC | 59.188 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
4953 | 6960 | 3.713764 | AGTAACCTCTGCTAATGATGCCT | 59.286 | 43.478 | 0.00 | 0.00 | 0.00 | 4.75 |
4954 | 6961 | 2.926778 | ACCTCTGCTAATGATGCCTC | 57.073 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4955 | 6962 | 2.121948 | ACCTCTGCTAATGATGCCTCA | 58.878 | 47.619 | 0.00 | 0.00 | 35.41 | 3.86 |
4956 | 6963 | 2.709934 | ACCTCTGCTAATGATGCCTCAT | 59.290 | 45.455 | 0.00 | 0.00 | 44.14 | 2.90 |
4957 | 6964 | 3.244491 | ACCTCTGCTAATGATGCCTCATC | 60.244 | 47.826 | 4.86 | 0.13 | 41.34 | 2.92 |
4965 | 6972 | 1.576577 | TGATGCCTCATCACCACTCT | 58.423 | 50.000 | 5.48 | 0.00 | 44.60 | 3.24 |
4966 | 6973 | 1.911357 | TGATGCCTCATCACCACTCTT | 59.089 | 47.619 | 5.48 | 0.00 | 44.60 | 2.85 |
4967 | 6974 | 3.106827 | TGATGCCTCATCACCACTCTTA | 58.893 | 45.455 | 5.48 | 0.00 | 44.60 | 2.10 |
4968 | 6975 | 3.118629 | TGATGCCTCATCACCACTCTTAC | 60.119 | 47.826 | 5.48 | 0.00 | 44.60 | 2.34 |
4969 | 6976 | 2.540383 | TGCCTCATCACCACTCTTACT | 58.460 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
4970 | 6977 | 2.234661 | TGCCTCATCACCACTCTTACTG | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4971 | 6978 | 2.234908 | GCCTCATCACCACTCTTACTGT | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
4972 | 6979 | 3.307059 | GCCTCATCACCACTCTTACTGTT | 60.307 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
4973 | 6980 | 4.248859 | CCTCATCACCACTCTTACTGTTG | 58.751 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
4974 | 6981 | 4.262635 | CCTCATCACCACTCTTACTGTTGT | 60.263 | 45.833 | 0.00 | 0.00 | 0.00 | 3.32 |
4975 | 6982 | 5.047306 | CCTCATCACCACTCTTACTGTTGTA | 60.047 | 44.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4976 | 6983 | 6.413783 | TCATCACCACTCTTACTGTTGTAA | 57.586 | 37.500 | 0.00 | 0.00 | 37.16 | 2.41 |
4977 | 6984 | 6.822442 | TCATCACCACTCTTACTGTTGTAAA | 58.178 | 36.000 | 0.00 | 0.00 | 38.09 | 2.01 |
4991 | 6998 | 3.924610 | GTTGTAAACCTCGCGATGATTC | 58.075 | 45.455 | 18.54 | 7.44 | 42.21 | 2.52 |
4992 | 6999 | 3.239587 | TGTAAACCTCGCGATGATTCA | 57.760 | 42.857 | 18.54 | 9.64 | 0.00 | 2.57 |
4993 | 7000 | 3.591023 | TGTAAACCTCGCGATGATTCAA | 58.409 | 40.909 | 18.54 | 2.10 | 0.00 | 2.69 |
4994 | 7001 | 4.188462 | TGTAAACCTCGCGATGATTCAAT | 58.812 | 39.130 | 18.54 | 0.00 | 0.00 | 2.57 |
4995 | 7002 | 3.951979 | AAACCTCGCGATGATTCAATC | 57.048 | 42.857 | 18.54 | 0.00 | 0.00 | 2.67 |
4996 | 7003 | 1.871080 | ACCTCGCGATGATTCAATCC | 58.129 | 50.000 | 18.54 | 0.00 | 0.00 | 3.01 |
4997 | 7004 | 1.151668 | CCTCGCGATGATTCAATCCC | 58.848 | 55.000 | 10.36 | 0.00 | 0.00 | 3.85 |
4998 | 7005 | 0.786581 | CTCGCGATGATTCAATCCCG | 59.213 | 55.000 | 10.36 | 0.03 | 30.80 | 5.14 |
4999 | 7006 | 0.104120 | TCGCGATGATTCAATCCCGT | 59.896 | 50.000 | 3.71 | 0.00 | 31.41 | 5.28 |
5000 | 7007 | 0.937304 | CGCGATGATTCAATCCCGTT | 59.063 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
5001 | 7008 | 1.070577 | CGCGATGATTCAATCCCGTTC | 60.071 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
5002 | 7009 | 1.070577 | GCGATGATTCAATCCCGTTCG | 60.071 | 52.381 | 9.95 | 7.58 | 0.00 | 3.95 |
5003 | 7010 | 2.469826 | CGATGATTCAATCCCGTTCGA | 58.530 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
5004 | 7011 | 2.863740 | CGATGATTCAATCCCGTTCGAA | 59.136 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
5005 | 7012 | 3.494626 | CGATGATTCAATCCCGTTCGAAT | 59.505 | 43.478 | 0.00 | 0.00 | 0.00 | 3.34 |
5006 | 7013 | 4.024893 | CGATGATTCAATCCCGTTCGAATT | 60.025 | 41.667 | 0.00 | 0.00 | 0.00 | 2.17 |
5007 | 7014 | 4.875544 | TGATTCAATCCCGTTCGAATTC | 57.124 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
5008 | 7015 | 4.257731 | TGATTCAATCCCGTTCGAATTCA | 58.742 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
5009 | 7016 | 4.697828 | TGATTCAATCCCGTTCGAATTCAA | 59.302 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
5010 | 7017 | 5.182190 | TGATTCAATCCCGTTCGAATTCAAA | 59.818 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
5011 | 7018 | 5.637006 | TTCAATCCCGTTCGAATTCAAAT | 57.363 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
5012 | 7019 | 5.637006 | TCAATCCCGTTCGAATTCAAATT | 57.363 | 34.783 | 0.00 | 0.00 | 0.00 | 1.82 |
5013 | 7020 | 6.019779 | TCAATCCCGTTCGAATTCAAATTT | 57.980 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
5014 | 7021 | 6.090129 | TCAATCCCGTTCGAATTCAAATTTC | 58.910 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
5015 | 7022 | 5.637006 | ATCCCGTTCGAATTCAAATTTCA | 57.363 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
5016 | 7023 | 5.440234 | TCCCGTTCGAATTCAAATTTCAA | 57.560 | 34.783 | 0.00 | 0.00 | 0.00 | 2.69 |
5017 | 7024 | 5.833082 | TCCCGTTCGAATTCAAATTTCAAA | 58.167 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
5018 | 7025 | 6.273825 | TCCCGTTCGAATTCAAATTTCAAAA | 58.726 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
5019 | 7026 | 6.926272 | TCCCGTTCGAATTCAAATTTCAAAAT | 59.074 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
5020 | 7027 | 7.115663 | TCCCGTTCGAATTCAAATTTCAAAATC | 59.884 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
5021 | 7028 | 7.095857 | CCCGTTCGAATTCAAATTTCAAAATCA | 60.096 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
5022 | 7029 | 8.272176 | CCGTTCGAATTCAAATTTCAAAATCAA | 58.728 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
5023 | 7030 | 9.630310 | CGTTCGAATTCAAATTTCAAAATCAAA | 57.370 | 25.926 | 0.00 | 0.00 | 0.00 | 2.69 |
5025 | 7032 | 9.649024 | TTCGAATTCAAATTTCAAAATCAAAGC | 57.351 | 25.926 | 6.22 | 0.00 | 0.00 | 3.51 |
5026 | 7033 | 8.824781 | TCGAATTCAAATTTCAAAATCAAAGCA | 58.175 | 25.926 | 6.22 | 0.00 | 0.00 | 3.91 |
5027 | 7034 | 9.435802 | CGAATTCAAATTTCAAAATCAAAGCAA | 57.564 | 25.926 | 6.22 | 0.00 | 0.00 | 3.91 |
5031 | 7038 | 9.903682 | TTCAAATTTCAAAATCAAAGCAAACAA | 57.096 | 22.222 | 0.00 | 0.00 | 0.00 | 2.83 |
5074 | 7081 | 1.880027 | ACAAAAGTGTTCGGGAGATGC | 59.120 | 47.619 | 0.00 | 0.00 | 39.57 | 3.91 |
5075 | 7082 | 1.200020 | CAAAAGTGTTCGGGAGATGCC | 59.800 | 52.381 | 0.00 | 0.00 | 39.57 | 4.40 |
5076 | 7083 | 0.400213 | AAAGTGTTCGGGAGATGCCA | 59.600 | 50.000 | 0.00 | 0.00 | 39.57 | 4.92 |
5077 | 7084 | 0.620556 | AAGTGTTCGGGAGATGCCAT | 59.379 | 50.000 | 0.00 | 0.00 | 39.57 | 4.40 |
5078 | 7085 | 1.496060 | AGTGTTCGGGAGATGCCATA | 58.504 | 50.000 | 0.00 | 0.00 | 39.57 | 2.74 |
5079 | 7086 | 2.050144 | AGTGTTCGGGAGATGCCATAT | 58.950 | 47.619 | 0.00 | 0.00 | 39.57 | 1.78 |
5080 | 7087 | 2.439507 | AGTGTTCGGGAGATGCCATATT | 59.560 | 45.455 | 0.00 | 0.00 | 39.57 | 1.28 |
5081 | 7088 | 3.117888 | AGTGTTCGGGAGATGCCATATTT | 60.118 | 43.478 | 0.00 | 0.00 | 39.57 | 1.40 |
5082 | 7089 | 3.632145 | GTGTTCGGGAGATGCCATATTTT | 59.368 | 43.478 | 0.00 | 0.00 | 39.57 | 1.82 |
5083 | 7090 | 4.819630 | GTGTTCGGGAGATGCCATATTTTA | 59.180 | 41.667 | 0.00 | 0.00 | 39.57 | 1.52 |
5084 | 7091 | 4.819630 | TGTTCGGGAGATGCCATATTTTAC | 59.180 | 41.667 | 0.00 | 0.00 | 39.57 | 2.01 |
5085 | 7092 | 4.698201 | TCGGGAGATGCCATATTTTACA | 57.302 | 40.909 | 0.00 | 0.00 | 38.95 | 2.41 |
5086 | 7093 | 5.241403 | TCGGGAGATGCCATATTTTACAT | 57.759 | 39.130 | 0.00 | 0.00 | 38.95 | 2.29 |
5087 | 7094 | 6.367374 | TCGGGAGATGCCATATTTTACATA | 57.633 | 37.500 | 0.00 | 0.00 | 38.95 | 2.29 |
5088 | 7095 | 6.774673 | TCGGGAGATGCCATATTTTACATAA | 58.225 | 36.000 | 0.00 | 0.00 | 38.95 | 1.90 |
5089 | 7096 | 6.878923 | TCGGGAGATGCCATATTTTACATAAG | 59.121 | 38.462 | 0.00 | 0.00 | 38.95 | 1.73 |
5090 | 7097 | 6.655003 | CGGGAGATGCCATATTTTACATAAGT | 59.345 | 38.462 | 0.00 | 0.00 | 38.95 | 2.24 |
5091 | 7098 | 7.148407 | CGGGAGATGCCATATTTTACATAAGTC | 60.148 | 40.741 | 0.00 | 0.00 | 38.95 | 3.01 |
5092 | 7099 | 7.665559 | GGGAGATGCCATATTTTACATAAGTCA | 59.334 | 37.037 | 0.00 | 0.00 | 38.95 | 3.41 |
5093 | 7100 | 9.066892 | GGAGATGCCATATTTTACATAAGTCAA | 57.933 | 33.333 | 0.00 | 0.00 | 36.34 | 3.18 |
5205 | 7212 | 8.317891 | ACTAACAAAACAAAACAAAAAGAGGG | 57.682 | 30.769 | 0.00 | 0.00 | 0.00 | 4.30 |
5206 | 7213 | 8.151596 | ACTAACAAAACAAAACAAAAAGAGGGA | 58.848 | 29.630 | 0.00 | 0.00 | 0.00 | 4.20 |
5207 | 7214 | 7.809546 | AACAAAACAAAACAAAAAGAGGGAA | 57.190 | 28.000 | 0.00 | 0.00 | 0.00 | 3.97 |
5208 | 7215 | 7.197071 | ACAAAACAAAACAAAAAGAGGGAAC | 57.803 | 32.000 | 0.00 | 0.00 | 0.00 | 3.62 |
5226 | 7233 | 4.798682 | CCCCTCCCACGGCCTACT | 62.799 | 72.222 | 0.00 | 0.00 | 0.00 | 2.57 |
5227 | 7234 | 3.470888 | CCCTCCCACGGCCTACTG | 61.471 | 72.222 | 0.00 | 0.00 | 0.00 | 2.74 |
5228 | 7235 | 3.470888 | CCTCCCACGGCCTACTGG | 61.471 | 72.222 | 0.00 | 2.23 | 0.00 | 4.00 |
5246 | 7253 | 3.809013 | CCTAGTTGGCCGGCCCAT | 61.809 | 66.667 | 41.75 | 28.54 | 44.89 | 4.00 |
5247 | 7254 | 2.275418 | CTAGTTGGCCGGCCCATT | 59.725 | 61.111 | 41.75 | 30.12 | 44.89 | 3.16 |
5248 | 7255 | 1.823899 | CTAGTTGGCCGGCCCATTC | 60.824 | 63.158 | 41.75 | 26.88 | 44.89 | 2.67 |
5249 | 7256 | 3.690685 | TAGTTGGCCGGCCCATTCG | 62.691 | 63.158 | 41.75 | 0.00 | 44.89 | 3.34 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 20 | 5.235516 | ACCAACGAAGATAACCTACAACTG | 58.764 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
21 | 23 | 6.839124 | TCTACCAACGAAGATAACCTACAA | 57.161 | 37.500 | 0.00 | 0.00 | 0.00 | 2.41 |
31 | 33 | 6.400568 | ACCGATTAAAATCTACCAACGAAGA | 58.599 | 36.000 | 0.00 | 0.00 | 33.24 | 2.87 |
35 | 37 | 6.411630 | TGAACCGATTAAAATCTACCAACG | 57.588 | 37.500 | 1.52 | 0.00 | 33.24 | 4.10 |
49 | 51 | 2.280628 | GAAGCCGAAGATGAACCGATT | 58.719 | 47.619 | 0.00 | 0.00 | 0.00 | 3.34 |
53 | 55 | 0.391263 | ACCGAAGCCGAAGATGAACC | 60.391 | 55.000 | 0.00 | 0.00 | 38.22 | 3.62 |
68 | 70 | 1.964933 | TGGTGTTGTCATCACTACCGA | 59.035 | 47.619 | 12.61 | 0.00 | 34.50 | 4.69 |
88 | 90 | 4.514401 | GATTTGGAGACACCTTATTCGGT | 58.486 | 43.478 | 0.00 | 0.00 | 42.67 | 4.69 |
94 | 99 | 4.263331 | GGTCAAGGATTTGGAGACACCTTA | 60.263 | 45.833 | 0.00 | 0.00 | 41.09 | 2.69 |
95 | 100 | 3.498661 | GGTCAAGGATTTGGAGACACCTT | 60.499 | 47.826 | 0.00 | 0.00 | 43.10 | 3.50 |
96 | 101 | 2.040412 | GGTCAAGGATTTGGAGACACCT | 59.960 | 50.000 | 0.00 | 0.00 | 42.67 | 4.00 |
114 | 119 | 1.474077 | GTGGAATCTGGCATGTTGGTC | 59.526 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
124 | 129 | 0.459899 | TCGACGATGGTGGAATCTGG | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
141 | 146 | 4.509230 | AGAAACATCATCATGGATTCGTCG | 59.491 | 41.667 | 0.00 | 0.00 | 36.12 | 5.12 |
146 | 151 | 5.039920 | TCGGAGAAACATCATCATGGATT | 57.960 | 39.130 | 0.00 | 0.00 | 33.82 | 3.01 |
156 | 161 | 1.137282 | GACCCCTCTCGGAGAAACATC | 59.863 | 57.143 | 9.32 | 1.74 | 34.09 | 3.06 |
157 | 162 | 1.196012 | GACCCCTCTCGGAGAAACAT | 58.804 | 55.000 | 9.32 | 0.00 | 34.09 | 2.71 |
162 | 167 | 1.677966 | CGTTGACCCCTCTCGGAGA | 60.678 | 63.158 | 7.60 | 7.60 | 0.00 | 3.71 |
188 | 193 | 5.029474 | AGGAAAAAGCTCTAGGTCATCTCT | 58.971 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
190 | 195 | 4.163268 | GGAGGAAAAAGCTCTAGGTCATCT | 59.837 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
209 | 214 | 2.415825 | TCGATAGGCGAGTTGGAGG | 58.584 | 57.895 | 0.00 | 0.00 | 45.59 | 4.30 |
221 | 226 | 7.441760 | ACACTAGAGTACACATTACCTCGATAG | 59.558 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
223 | 228 | 6.120905 | ACACTAGAGTACACATTACCTCGAT | 58.879 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
242 | 247 | 1.684450 | TGAAGCTCCACAACGACACTA | 59.316 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
302 | 307 | 1.832883 | TGTAAGCCAACATTGCCGAT | 58.167 | 45.000 | 0.00 | 0.00 | 0.00 | 4.18 |
354 | 359 | 2.275089 | CCGCCATCATTCCACCCA | 59.725 | 61.111 | 0.00 | 0.00 | 0.00 | 4.51 |
363 | 368 | 2.745308 | CCACTGGATCCCGCCATCA | 61.745 | 63.158 | 9.90 | 0.00 | 37.30 | 3.07 |
372 | 377 | 1.817209 | GTCGAGGGACCACTGGATC | 59.183 | 63.158 | 0.71 | 0.00 | 37.19 | 3.36 |
373 | 378 | 2.052690 | CGTCGAGGGACCACTGGAT | 61.053 | 63.158 | 0.71 | 0.00 | 40.17 | 3.41 |
376 | 381 | 1.595993 | ATGTCGTCGAGGGACCACTG | 61.596 | 60.000 | 12.56 | 0.00 | 40.17 | 3.66 |
377 | 382 | 0.898789 | AATGTCGTCGAGGGACCACT | 60.899 | 55.000 | 12.56 | 0.00 | 40.17 | 4.00 |
378 | 383 | 0.736325 | CAATGTCGTCGAGGGACCAC | 60.736 | 60.000 | 12.56 | 1.67 | 40.17 | 4.16 |
379 | 384 | 1.183030 | ACAATGTCGTCGAGGGACCA | 61.183 | 55.000 | 12.56 | 5.15 | 40.17 | 4.02 |
381 | 386 | 1.352156 | GCACAATGTCGTCGAGGGAC | 61.352 | 60.000 | 5.12 | 7.40 | 39.89 | 4.46 |
382 | 387 | 1.080093 | GCACAATGTCGTCGAGGGA | 60.080 | 57.895 | 5.12 | 0.00 | 0.00 | 4.20 |
383 | 388 | 2.444624 | CGCACAATGTCGTCGAGGG | 61.445 | 63.158 | 5.12 | 0.00 | 0.00 | 4.30 |
400 | 406 | 0.603569 | CATCGGATCTACCTTCCCCG | 59.396 | 60.000 | 0.00 | 0.00 | 41.36 | 5.73 |
403 | 409 | 1.269998 | CGTCCATCGGATCTACCTTCC | 59.730 | 57.143 | 0.00 | 0.00 | 32.73 | 3.46 |
417 | 423 | 0.690077 | GTCCTAGGAACCCCGTCCAT | 60.690 | 60.000 | 14.65 | 0.00 | 40.48 | 3.41 |
422 | 428 | 1.679977 | TGTCGTCCTAGGAACCCCG | 60.680 | 63.158 | 14.65 | 13.16 | 37.58 | 5.73 |
472 | 480 | 7.604164 | AGCTTTGAGAATCGATGAAGAAAACTA | 59.396 | 33.333 | 0.00 | 0.00 | 38.61 | 2.24 |
509 | 523 | 0.868406 | CAAAGAACTGTCGGTGCTCC | 59.132 | 55.000 | 0.00 | 0.00 | 31.23 | 4.70 |
510 | 524 | 0.868406 | CCAAAGAACTGTCGGTGCTC | 59.132 | 55.000 | 0.00 | 0.00 | 31.23 | 4.26 |
511 | 525 | 1.166531 | GCCAAAGAACTGTCGGTGCT | 61.167 | 55.000 | 0.00 | 0.00 | 34.69 | 4.40 |
512 | 526 | 1.166531 | AGCCAAAGAACTGTCGGTGC | 61.167 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
530 | 544 | 3.368323 | GGAGAAGAGACAAGCTCCTTCAG | 60.368 | 52.174 | 0.00 | 0.00 | 45.10 | 3.02 |
533 | 547 | 1.905894 | GGGAGAAGAGACAAGCTCCTT | 59.094 | 52.381 | 0.00 | 0.00 | 45.10 | 3.36 |
551 | 565 | 2.125147 | TTCATCGCCGCTGAAGGG | 60.125 | 61.111 | 0.00 | 0.00 | 0.00 | 3.95 |
588 | 602 | 1.380302 | CAACAAGGTCCCTGGGGAG | 59.620 | 63.158 | 14.00 | 0.00 | 46.16 | 4.30 |
589 | 603 | 1.386772 | ACAACAAGGTCCCTGGGGA | 60.387 | 57.895 | 14.00 | 3.92 | 42.90 | 4.81 |
608 | 628 | 9.690434 | GAAACACATCTCACGTAATAGAAAATC | 57.310 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
656 | 676 | 3.823330 | CGAACCGACGAGAGGGGG | 61.823 | 72.222 | 0.00 | 0.00 | 33.66 | 5.40 |
709 | 729 | 3.612423 | TGTACATTCAATCGAGCGTCAAG | 59.388 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
711 | 731 | 2.921121 | GTGTACATTCAATCGAGCGTCA | 59.079 | 45.455 | 0.00 | 0.00 | 0.00 | 4.35 |
776 | 816 | 5.936956 | CCAAATTTGCCTTTTTGTAGCCATA | 59.063 | 36.000 | 12.92 | 0.00 | 32.23 | 2.74 |
779 | 819 | 3.058293 | GCCAAATTTGCCTTTTTGTAGCC | 60.058 | 43.478 | 12.92 | 0.00 | 32.23 | 3.93 |
780 | 820 | 3.563390 | TGCCAAATTTGCCTTTTTGTAGC | 59.437 | 39.130 | 12.92 | 7.15 | 32.23 | 3.58 |
807 | 847 | 1.276705 | GGTCCACCTTCCTCTTGTCTC | 59.723 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
825 | 865 | 5.669164 | TTGCTAAAAACTTCAAACAGGGT | 57.331 | 34.783 | 0.00 | 0.00 | 0.00 | 4.34 |
902 | 942 | 2.021457 | GCGGCAATTAGGTATGGTTGT | 58.979 | 47.619 | 0.00 | 0.00 | 0.00 | 3.32 |
911 | 951 | 4.554723 | CGATTAAAGGAAGCGGCAATTAGG | 60.555 | 45.833 | 1.45 | 0.00 | 43.21 | 2.69 |
934 | 974 | 1.519455 | CCTCGTCGGTGAGATTGGC | 60.519 | 63.158 | 6.42 | 0.00 | 38.28 | 4.52 |
967 | 1007 | 1.687660 | GGGAGGGAGACGAGGTATTTC | 59.312 | 57.143 | 0.00 | 0.00 | 0.00 | 2.17 |
1144 | 1184 | 4.568876 | CGAAACATACCGCGCGCC | 62.569 | 66.667 | 27.36 | 8.11 | 0.00 | 6.53 |
1172 | 1213 | 1.667830 | CGCTCTGCCAAGAAACGGA | 60.668 | 57.895 | 0.00 | 0.00 | 31.57 | 4.69 |
1262 | 1303 | 2.423898 | GCCTTCCCGATCAGACCGA | 61.424 | 63.158 | 0.00 | 0.00 | 0.00 | 4.69 |
1264 | 1305 | 0.462759 | CAAGCCTTCCCGATCAGACC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1451 | 1492 | 4.810790 | AGAAACAGTTAGATCTCACACCG | 58.189 | 43.478 | 9.64 | 0.60 | 0.00 | 4.94 |
1502 | 1543 | 1.492319 | GCACCAAGCACGAACACGTA | 61.492 | 55.000 | 0.00 | 0.00 | 44.79 | 3.57 |
1558 | 1600 | 0.310543 | GCATGTGCACAACCGAAGAA | 59.689 | 50.000 | 25.72 | 0.00 | 41.59 | 2.52 |
1563 | 1605 | 2.174107 | CGAGCATGTGCACAACCG | 59.826 | 61.111 | 25.72 | 19.31 | 45.16 | 4.44 |
1578 | 1620 | 6.288941 | TCTGGTGTTAATAATCTGAACCGA | 57.711 | 37.500 | 0.00 | 0.00 | 0.00 | 4.69 |
1656 | 1711 | 6.453003 | GCTGCGACGAATCACAATATATACAG | 60.453 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
1657 | 1712 | 5.344933 | GCTGCGACGAATCACAATATATACA | 59.655 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1658 | 1713 | 5.344933 | TGCTGCGACGAATCACAATATATAC | 59.655 | 40.000 | 0.00 | 0.00 | 0.00 | 1.47 |
1659 | 1714 | 5.465935 | TGCTGCGACGAATCACAATATATA | 58.534 | 37.500 | 0.00 | 0.00 | 0.00 | 0.86 |
1660 | 1715 | 4.306600 | TGCTGCGACGAATCACAATATAT | 58.693 | 39.130 | 0.00 | 0.00 | 0.00 | 0.86 |
1781 | 1836 | 2.248487 | GGTAGCTACACAACTCGTTCG | 58.752 | 52.381 | 24.75 | 0.00 | 0.00 | 3.95 |
1811 | 1876 | 1.003580 | CCAGGACATGCTACACAACCT | 59.996 | 52.381 | 0.00 | 0.00 | 32.91 | 3.50 |
1874 | 1939 | 1.563111 | CAGGCAGCACAAACAAACAG | 58.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1919 | 1984 | 5.500645 | ACCAAGTCAAAGCTAACAAGTTC | 57.499 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
1982 | 2074 | 8.584157 | ACTGGTATCTCATATTCTCATTCACTC | 58.416 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2033 | 2125 | 3.379240 | TGCAAAACACAATTCCATGTCG | 58.621 | 40.909 | 0.00 | 0.00 | 0.00 | 4.35 |
2108 | 2200 | 4.394920 | TCGAAAAACTTCATCCATAGTGCC | 59.605 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2271 | 2363 | 6.462487 | GGAATCCTGACAATGGTACGAGAATA | 60.462 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
2285 | 2377 | 7.861629 | AGTGAATTAACTATGGAATCCTGACA | 58.138 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
2297 | 2389 | 6.595716 | GTGCAGAACTGGAGTGAATTAACTAT | 59.404 | 38.462 | 0.00 | 0.00 | 0.00 | 2.12 |
2392 | 2489 | 3.056952 | AGTAACTATTGTCGTACCGCG | 57.943 | 47.619 | 0.00 | 0.00 | 43.01 | 6.46 |
2564 | 2666 | 4.213482 | AGACGTAAAAGGACAATTCAGCAC | 59.787 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
2786 | 2891 | 4.219944 | AGCATTGAGTTGCAAATCAGTCAT | 59.780 | 37.500 | 26.36 | 16.38 | 45.23 | 3.06 |
2836 | 2941 | 2.541346 | AGCGATGCAAGTCGTGATAATG | 59.459 | 45.455 | 11.09 | 0.00 | 43.27 | 1.90 |
2897 | 3002 | 2.270923 | GCCAGGAAATTTCGATTTGGC | 58.729 | 47.619 | 25.31 | 25.31 | 0.00 | 4.52 |
2898 | 3003 | 3.591196 | TGCCAGGAAATTTCGATTTGG | 57.409 | 42.857 | 18.05 | 18.05 | 0.00 | 3.28 |
3022 | 3128 | 2.094957 | AGACCACACAACAAAAACGGTG | 60.095 | 45.455 | 0.00 | 0.00 | 37.29 | 4.94 |
3026 | 3133 | 5.705902 | ACTACAAGACCACACAACAAAAAC | 58.294 | 37.500 | 0.00 | 0.00 | 0.00 | 2.43 |
3031 | 3138 | 2.769663 | AGGACTACAAGACCACACAACA | 59.230 | 45.455 | 0.00 | 0.00 | 32.35 | 3.33 |
3034 | 3141 | 4.202284 | GGTTAAGGACTACAAGACCACACA | 60.202 | 45.833 | 0.00 | 0.00 | 32.35 | 3.72 |
3042 | 3149 | 4.222145 | TGGTAGCTGGTTAAGGACTACAAG | 59.778 | 45.833 | 0.00 | 0.00 | 35.91 | 3.16 |
3201 | 3308 | 6.795098 | ACGTTAGATGTGTAATTGAAAGCA | 57.205 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
3237 | 3344 | 1.113788 | AGTTTGCCAAAGCTGCTTCA | 58.886 | 45.000 | 16.28 | 6.76 | 40.80 | 3.02 |
3300 | 3407 | 4.036734 | ACAAGACGATGAAAAACTGCACAT | 59.963 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
3439 | 3546 | 3.370978 | ACGGATCATGAAGCAAAACGTAG | 59.629 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
3460 | 3567 | 5.392057 | GCCAAGTATGTTTCTCCAGCTAAAC | 60.392 | 44.000 | 3.35 | 3.35 | 36.38 | 2.01 |
3688 | 3795 | 7.525688 | TCTTTTGACTGCAATATAGAGAACG | 57.474 | 36.000 | 0.00 | 0.00 | 33.25 | 3.95 |
3697 | 3804 | 5.689383 | GTCACCTTCTTTTGACTGCAATA | 57.311 | 39.130 | 0.00 | 0.00 | 39.30 | 1.90 |
3747 | 3854 | 3.960102 | TCACCTCCATTTTCAACTTTGCT | 59.040 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
3825 | 3932 | 3.062234 | CCGCCGTCTAAGAGACAAAATTC | 59.938 | 47.826 | 7.36 | 0.00 | 45.30 | 2.17 |
3831 | 3938 | 0.738975 | CATCCGCCGTCTAAGAGACA | 59.261 | 55.000 | 7.36 | 0.00 | 45.30 | 3.41 |
3994 | 4156 | 9.149225 | CAATATCTGCTATCTAGTTTCATGGTC | 57.851 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
4067 | 4229 | 1.961277 | GCAGACCAGTGTCCCAACG | 60.961 | 63.158 | 0.00 | 0.00 | 42.81 | 4.10 |
4434 | 6405 | 5.182001 | AGTTGCTAGCTCATTACAGTTTTGG | 59.818 | 40.000 | 17.23 | 0.00 | 0.00 | 3.28 |
4512 | 6483 | 3.797039 | TGGCGAGTTAAATGAGAGATGG | 58.203 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
4542 | 6513 | 2.412870 | TGCATTGTACGGAACTGACAG | 58.587 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
4554 | 6525 | 4.946445 | CCATTTGGTATGCATGCATTGTA | 58.054 | 39.130 | 36.23 | 17.76 | 37.82 | 2.41 |
4570 | 6541 | 2.621055 | TGAAGAACCGGTGAACCATTTG | 59.379 | 45.455 | 8.52 | 0.00 | 35.14 | 2.32 |
4679 | 6657 | 0.260230 | TTTCCACAAGGGGCTGTTGA | 59.740 | 50.000 | 6.41 | 0.00 | 37.22 | 3.18 |
4691 | 6669 | 3.576078 | AGGTTGAGTGATGTTTCCACA | 57.424 | 42.857 | 0.00 | 0.00 | 37.01 | 4.17 |
4693 | 6671 | 3.068024 | GCAAAGGTTGAGTGATGTTTCCA | 59.932 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
4847 | 6854 | 4.777463 | AGCTAGGTTGTTTAGTTGTGTGT | 58.223 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
4852 | 6859 | 8.870879 | GTCATAGTTAGCTAGGTTGTTTAGTTG | 58.129 | 37.037 | 0.00 | 0.00 | 31.54 | 3.16 |
4864 | 6871 | 5.915758 | CACCGCTTTAGTCATAGTTAGCTAG | 59.084 | 44.000 | 0.00 | 0.00 | 0.00 | 3.42 |
4907 | 6914 | 1.878102 | GCTTGATTATCCGGGCGTCAT | 60.878 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
4908 | 6915 | 0.531974 | GCTTGATTATCCGGGCGTCA | 60.532 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4909 | 6916 | 0.249911 | AGCTTGATTATCCGGGCGTC | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4910 | 6917 | 1.045407 | TAGCTTGATTATCCGGGCGT | 58.955 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4911 | 6918 | 1.270094 | TGTAGCTTGATTATCCGGGCG | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
4912 | 6919 | 2.224305 | ACTGTAGCTTGATTATCCGGGC | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4913 | 6920 | 3.753294 | ACTGTAGCTTGATTATCCGGG | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 5.73 |
4914 | 6921 | 4.989168 | GGTTACTGTAGCTTGATTATCCGG | 59.011 | 45.833 | 0.00 | 0.00 | 0.00 | 5.14 |
4915 | 6922 | 5.844004 | AGGTTACTGTAGCTTGATTATCCG | 58.156 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
4916 | 6923 | 6.926272 | CAGAGGTTACTGTAGCTTGATTATCC | 59.074 | 42.308 | 0.00 | 0.00 | 33.73 | 2.59 |
4917 | 6924 | 6.422400 | GCAGAGGTTACTGTAGCTTGATTATC | 59.578 | 42.308 | 0.00 | 0.00 | 39.73 | 1.75 |
4918 | 6925 | 6.098982 | AGCAGAGGTTACTGTAGCTTGATTAT | 59.901 | 38.462 | 0.00 | 0.00 | 39.73 | 1.28 |
4919 | 6926 | 5.422331 | AGCAGAGGTTACTGTAGCTTGATTA | 59.578 | 40.000 | 0.00 | 0.00 | 39.73 | 1.75 |
4920 | 6927 | 4.223923 | AGCAGAGGTTACTGTAGCTTGATT | 59.776 | 41.667 | 0.00 | 0.00 | 39.73 | 2.57 |
4921 | 6928 | 3.772025 | AGCAGAGGTTACTGTAGCTTGAT | 59.228 | 43.478 | 0.00 | 0.00 | 39.73 | 2.57 |
4922 | 6929 | 3.165875 | AGCAGAGGTTACTGTAGCTTGA | 58.834 | 45.455 | 0.00 | 0.00 | 39.73 | 3.02 |
4923 | 6930 | 3.601443 | AGCAGAGGTTACTGTAGCTTG | 57.399 | 47.619 | 0.00 | 0.74 | 39.73 | 4.01 |
4924 | 6931 | 5.422331 | TCATTAGCAGAGGTTACTGTAGCTT | 59.578 | 40.000 | 0.00 | 0.00 | 39.73 | 3.74 |
4925 | 6932 | 4.956700 | TCATTAGCAGAGGTTACTGTAGCT | 59.043 | 41.667 | 1.71 | 0.00 | 39.73 | 3.32 |
4926 | 6933 | 5.263968 | TCATTAGCAGAGGTTACTGTAGC | 57.736 | 43.478 | 0.00 | 0.00 | 39.73 | 3.58 |
4927 | 6934 | 5.694006 | GCATCATTAGCAGAGGTTACTGTAG | 59.306 | 44.000 | 0.00 | 0.00 | 39.73 | 2.74 |
4928 | 6935 | 5.453339 | GGCATCATTAGCAGAGGTTACTGTA | 60.453 | 44.000 | 0.00 | 0.00 | 39.73 | 2.74 |
4929 | 6936 | 4.446371 | GCATCATTAGCAGAGGTTACTGT | 58.554 | 43.478 | 0.00 | 0.00 | 39.73 | 3.55 |
4930 | 6937 | 3.812053 | GGCATCATTAGCAGAGGTTACTG | 59.188 | 47.826 | 0.00 | 0.00 | 40.43 | 2.74 |
4931 | 6938 | 3.713764 | AGGCATCATTAGCAGAGGTTACT | 59.286 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
4932 | 6939 | 4.061596 | GAGGCATCATTAGCAGAGGTTAC | 58.938 | 47.826 | 0.00 | 0.00 | 0.00 | 2.50 |
4933 | 6940 | 3.711190 | TGAGGCATCATTAGCAGAGGTTA | 59.289 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
4934 | 6941 | 2.507058 | TGAGGCATCATTAGCAGAGGTT | 59.493 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
4935 | 6942 | 2.121948 | TGAGGCATCATTAGCAGAGGT | 58.878 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
4936 | 6943 | 2.924757 | TGAGGCATCATTAGCAGAGG | 57.075 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
4937 | 6944 | 4.004196 | TGATGAGGCATCATTAGCAGAG | 57.996 | 45.455 | 16.04 | 0.00 | 46.39 | 3.35 |
4946 | 6953 | 1.576577 | AGAGTGGTGATGAGGCATCA | 58.423 | 50.000 | 2.36 | 2.36 | 46.84 | 3.07 |
4947 | 6954 | 2.706339 | AAGAGTGGTGATGAGGCATC | 57.294 | 50.000 | 0.00 | 0.00 | 40.88 | 3.91 |
4948 | 6955 | 3.110705 | AGTAAGAGTGGTGATGAGGCAT | 58.889 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
4949 | 6956 | 2.234661 | CAGTAAGAGTGGTGATGAGGCA | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
4950 | 6957 | 2.234908 | ACAGTAAGAGTGGTGATGAGGC | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4951 | 6958 | 4.248859 | CAACAGTAAGAGTGGTGATGAGG | 58.751 | 47.826 | 0.00 | 0.00 | 38.50 | 3.86 |
4952 | 6959 | 4.887748 | ACAACAGTAAGAGTGGTGATGAG | 58.112 | 43.478 | 6.35 | 0.00 | 38.50 | 2.90 |
4953 | 6960 | 4.955811 | ACAACAGTAAGAGTGGTGATGA | 57.044 | 40.909 | 6.35 | 0.00 | 38.50 | 2.92 |
4954 | 6961 | 6.073222 | GGTTTACAACAGTAAGAGTGGTGATG | 60.073 | 42.308 | 6.35 | 0.00 | 38.50 | 3.07 |
4955 | 6962 | 5.995897 | GGTTTACAACAGTAAGAGTGGTGAT | 59.004 | 40.000 | 6.35 | 0.00 | 38.50 | 3.06 |
4956 | 6963 | 5.129815 | AGGTTTACAACAGTAAGAGTGGTGA | 59.870 | 40.000 | 6.35 | 0.00 | 38.50 | 4.02 |
4957 | 6964 | 5.365619 | AGGTTTACAACAGTAAGAGTGGTG | 58.634 | 41.667 | 0.00 | 0.00 | 41.88 | 4.17 |
4958 | 6965 | 5.608449 | GAGGTTTACAACAGTAAGAGTGGT | 58.392 | 41.667 | 0.00 | 0.00 | 0.00 | 4.16 |
4959 | 6966 | 4.684703 | CGAGGTTTACAACAGTAAGAGTGG | 59.315 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
4960 | 6967 | 4.150098 | GCGAGGTTTACAACAGTAAGAGTG | 59.850 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
4961 | 6968 | 4.304939 | GCGAGGTTTACAACAGTAAGAGT | 58.695 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
4962 | 6969 | 3.364023 | CGCGAGGTTTACAACAGTAAGAG | 59.636 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
4963 | 6970 | 3.004629 | TCGCGAGGTTTACAACAGTAAGA | 59.995 | 43.478 | 3.71 | 0.00 | 0.00 | 2.10 |
4964 | 6971 | 3.311106 | TCGCGAGGTTTACAACAGTAAG | 58.689 | 45.455 | 3.71 | 0.00 | 0.00 | 2.34 |
4965 | 6972 | 3.367992 | TCGCGAGGTTTACAACAGTAA | 57.632 | 42.857 | 3.71 | 0.00 | 0.00 | 2.24 |
4966 | 6973 | 3.057386 | TCATCGCGAGGTTTACAACAGTA | 60.057 | 43.478 | 21.22 | 0.00 | 0.00 | 2.74 |
4967 | 6974 | 2.066262 | CATCGCGAGGTTTACAACAGT | 58.934 | 47.619 | 16.66 | 0.00 | 0.00 | 3.55 |
4968 | 6975 | 2.333926 | TCATCGCGAGGTTTACAACAG | 58.666 | 47.619 | 21.22 | 0.00 | 0.00 | 3.16 |
4969 | 6976 | 2.442212 | TCATCGCGAGGTTTACAACA | 57.558 | 45.000 | 21.22 | 0.00 | 0.00 | 3.33 |
4970 | 6977 | 3.369756 | TGAATCATCGCGAGGTTTACAAC | 59.630 | 43.478 | 21.22 | 7.27 | 0.00 | 3.32 |
4971 | 6978 | 3.591023 | TGAATCATCGCGAGGTTTACAA | 58.409 | 40.909 | 21.22 | 0.00 | 0.00 | 2.41 |
4972 | 6979 | 3.239587 | TGAATCATCGCGAGGTTTACA | 57.760 | 42.857 | 21.22 | 14.56 | 0.00 | 2.41 |
4973 | 6980 | 4.318831 | GGATTGAATCATCGCGAGGTTTAC | 60.319 | 45.833 | 21.22 | 12.41 | 0.00 | 2.01 |
4974 | 6981 | 3.807622 | GGATTGAATCATCGCGAGGTTTA | 59.192 | 43.478 | 21.22 | 8.36 | 0.00 | 2.01 |
4975 | 6982 | 2.614057 | GGATTGAATCATCGCGAGGTTT | 59.386 | 45.455 | 21.22 | 18.50 | 0.00 | 3.27 |
4976 | 6983 | 2.213499 | GGATTGAATCATCGCGAGGTT | 58.787 | 47.619 | 21.22 | 13.85 | 0.00 | 3.50 |
4977 | 6984 | 1.541233 | GGGATTGAATCATCGCGAGGT | 60.541 | 52.381 | 21.22 | 1.34 | 0.00 | 3.85 |
4978 | 6985 | 1.151668 | GGGATTGAATCATCGCGAGG | 58.848 | 55.000 | 15.81 | 15.81 | 0.00 | 4.63 |
4982 | 6989 | 1.070577 | CGAACGGGATTGAATCATCGC | 60.071 | 52.381 | 16.12 | 4.71 | 33.09 | 4.58 |
4983 | 6990 | 2.469826 | TCGAACGGGATTGAATCATCG | 58.530 | 47.619 | 15.10 | 15.10 | 34.96 | 3.84 |
4984 | 6991 | 5.007626 | TGAATTCGAACGGGATTGAATCATC | 59.992 | 40.000 | 7.56 | 0.00 | 31.06 | 2.92 |
4985 | 6992 | 4.881273 | TGAATTCGAACGGGATTGAATCAT | 59.119 | 37.500 | 7.56 | 0.00 | 31.06 | 2.45 |
4986 | 6993 | 4.257731 | TGAATTCGAACGGGATTGAATCA | 58.742 | 39.130 | 7.56 | 0.00 | 31.06 | 2.57 |
4987 | 6994 | 4.875544 | TGAATTCGAACGGGATTGAATC | 57.124 | 40.909 | 0.00 | 0.00 | 31.06 | 2.52 |
4988 | 6995 | 5.637006 | TTTGAATTCGAACGGGATTGAAT | 57.363 | 34.783 | 0.00 | 0.00 | 32.69 | 2.57 |
4989 | 6996 | 5.637006 | ATTTGAATTCGAACGGGATTGAA | 57.363 | 34.783 | 10.38 | 0.00 | 0.00 | 2.69 |
4990 | 6997 | 5.637006 | AATTTGAATTCGAACGGGATTGA | 57.363 | 34.783 | 10.38 | 0.00 | 0.00 | 2.57 |
4991 | 6998 | 5.861251 | TGAAATTTGAATTCGAACGGGATTG | 59.139 | 36.000 | 10.38 | 0.00 | 0.00 | 2.67 |
4992 | 6999 | 6.019779 | TGAAATTTGAATTCGAACGGGATT | 57.980 | 33.333 | 10.38 | 0.00 | 0.00 | 3.01 |
4993 | 7000 | 5.637006 | TGAAATTTGAATTCGAACGGGAT | 57.363 | 34.783 | 10.38 | 0.00 | 0.00 | 3.85 |
4994 | 7001 | 5.440234 | TTGAAATTTGAATTCGAACGGGA | 57.560 | 34.783 | 10.38 | 0.00 | 0.00 | 5.14 |
4995 | 7002 | 6.517914 | TTTTGAAATTTGAATTCGAACGGG | 57.482 | 33.333 | 10.38 | 0.00 | 31.53 | 5.28 |
4996 | 7003 | 7.782242 | TGATTTTGAAATTTGAATTCGAACGG | 58.218 | 30.769 | 10.38 | 0.00 | 31.53 | 4.44 |
4997 | 7004 | 9.630310 | TTTGATTTTGAAATTTGAATTCGAACG | 57.370 | 25.926 | 10.38 | 0.00 | 31.53 | 3.95 |
4999 | 7006 | 9.649024 | GCTTTGATTTTGAAATTTGAATTCGAA | 57.351 | 25.926 | 10.57 | 10.57 | 0.00 | 3.71 |
5000 | 7007 | 8.824781 | TGCTTTGATTTTGAAATTTGAATTCGA | 58.175 | 25.926 | 0.00 | 0.00 | 0.00 | 3.71 |
5001 | 7008 | 8.990722 | TGCTTTGATTTTGAAATTTGAATTCG | 57.009 | 26.923 | 0.00 | 0.00 | 0.00 | 3.34 |
5005 | 7012 | 9.903682 | TTGTTTGCTTTGATTTTGAAATTTGAA | 57.096 | 22.222 | 0.00 | 0.00 | 0.00 | 2.69 |
5041 | 7048 | 9.813080 | CCGAACACTTTTGTTTTAAATTTTGAA | 57.187 | 25.926 | 0.00 | 0.00 | 46.43 | 2.69 |
5042 | 7049 | 8.443937 | CCCGAACACTTTTGTTTTAAATTTTGA | 58.556 | 29.630 | 0.00 | 0.00 | 46.43 | 2.69 |
5043 | 7050 | 8.443937 | TCCCGAACACTTTTGTTTTAAATTTTG | 58.556 | 29.630 | 0.00 | 0.00 | 46.43 | 2.44 |
5044 | 7051 | 8.549338 | TCCCGAACACTTTTGTTTTAAATTTT | 57.451 | 26.923 | 0.00 | 0.00 | 46.43 | 1.82 |
5045 | 7052 | 8.035984 | TCTCCCGAACACTTTTGTTTTAAATTT | 58.964 | 29.630 | 0.00 | 0.00 | 46.43 | 1.82 |
5046 | 7053 | 7.548967 | TCTCCCGAACACTTTTGTTTTAAATT | 58.451 | 30.769 | 0.00 | 0.00 | 46.43 | 1.82 |
5047 | 7054 | 7.102847 | TCTCCCGAACACTTTTGTTTTAAAT | 57.897 | 32.000 | 0.00 | 0.00 | 46.43 | 1.40 |
5048 | 7055 | 6.512342 | TCTCCCGAACACTTTTGTTTTAAA | 57.488 | 33.333 | 0.00 | 0.00 | 46.43 | 1.52 |
5049 | 7056 | 6.500041 | CATCTCCCGAACACTTTTGTTTTAA | 58.500 | 36.000 | 0.00 | 0.00 | 46.43 | 1.52 |
5050 | 7057 | 5.506649 | GCATCTCCCGAACACTTTTGTTTTA | 60.507 | 40.000 | 0.00 | 0.00 | 46.43 | 1.52 |
5051 | 7058 | 4.736464 | GCATCTCCCGAACACTTTTGTTTT | 60.736 | 41.667 | 0.00 | 0.00 | 46.43 | 2.43 |
5052 | 7059 | 3.243401 | GCATCTCCCGAACACTTTTGTTT | 60.243 | 43.478 | 0.00 | 0.00 | 46.43 | 2.83 |
5054 | 7061 | 1.880027 | GCATCTCCCGAACACTTTTGT | 59.120 | 47.619 | 0.00 | 0.00 | 37.67 | 2.83 |
5055 | 7062 | 1.200020 | GGCATCTCCCGAACACTTTTG | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
5056 | 7063 | 1.202879 | TGGCATCTCCCGAACACTTTT | 60.203 | 47.619 | 0.00 | 0.00 | 0.00 | 2.27 |
5057 | 7064 | 0.400213 | TGGCATCTCCCGAACACTTT | 59.600 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5058 | 7065 | 0.620556 | ATGGCATCTCCCGAACACTT | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5059 | 7066 | 1.496060 | TATGGCATCTCCCGAACACT | 58.504 | 50.000 | 1.65 | 0.00 | 0.00 | 3.55 |
5060 | 7067 | 2.550830 | ATATGGCATCTCCCGAACAC | 57.449 | 50.000 | 1.65 | 0.00 | 0.00 | 3.32 |
5061 | 7068 | 3.576078 | AAATATGGCATCTCCCGAACA | 57.424 | 42.857 | 1.65 | 0.00 | 0.00 | 3.18 |
5062 | 7069 | 4.819630 | TGTAAAATATGGCATCTCCCGAAC | 59.180 | 41.667 | 1.65 | 0.00 | 0.00 | 3.95 |
5063 | 7070 | 5.042463 | TGTAAAATATGGCATCTCCCGAA | 57.958 | 39.130 | 1.65 | 0.00 | 0.00 | 4.30 |
5064 | 7071 | 4.698201 | TGTAAAATATGGCATCTCCCGA | 57.302 | 40.909 | 1.65 | 0.00 | 0.00 | 5.14 |
5065 | 7072 | 6.655003 | ACTTATGTAAAATATGGCATCTCCCG | 59.345 | 38.462 | 1.65 | 0.00 | 0.00 | 5.14 |
5066 | 7073 | 7.665559 | TGACTTATGTAAAATATGGCATCTCCC | 59.334 | 37.037 | 1.65 | 0.00 | 0.00 | 4.30 |
5067 | 7074 | 8.621532 | TGACTTATGTAAAATATGGCATCTCC | 57.378 | 34.615 | 1.65 | 0.00 | 0.00 | 3.71 |
5179 | 7186 | 8.779303 | CCCTCTTTTTGTTTTGTTTTGTTAGTT | 58.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
5180 | 7187 | 8.151596 | TCCCTCTTTTTGTTTTGTTTTGTTAGT | 58.848 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
5181 | 7188 | 8.541133 | TCCCTCTTTTTGTTTTGTTTTGTTAG | 57.459 | 30.769 | 0.00 | 0.00 | 0.00 | 2.34 |
5182 | 7189 | 8.775527 | GTTCCCTCTTTTTGTTTTGTTTTGTTA | 58.224 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
5183 | 7190 | 7.255312 | GGTTCCCTCTTTTTGTTTTGTTTTGTT | 60.255 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
5184 | 7191 | 6.205853 | GGTTCCCTCTTTTTGTTTTGTTTTGT | 59.794 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
5185 | 7192 | 6.348950 | GGGTTCCCTCTTTTTGTTTTGTTTTG | 60.349 | 38.462 | 0.00 | 0.00 | 0.00 | 2.44 |
5186 | 7193 | 5.708230 | GGGTTCCCTCTTTTTGTTTTGTTTT | 59.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
5187 | 7194 | 5.250200 | GGGTTCCCTCTTTTTGTTTTGTTT | 58.750 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
5188 | 7195 | 4.323945 | GGGGTTCCCTCTTTTTGTTTTGTT | 60.324 | 41.667 | 7.87 | 0.00 | 41.34 | 2.83 |
5189 | 7196 | 3.199071 | GGGGTTCCCTCTTTTTGTTTTGT | 59.801 | 43.478 | 7.87 | 0.00 | 41.34 | 2.83 |
5190 | 7197 | 3.804036 | GGGGTTCCCTCTTTTTGTTTTG | 58.196 | 45.455 | 7.87 | 0.00 | 41.34 | 2.44 |
5209 | 7216 | 4.798682 | AGTAGGCCGTGGGAGGGG | 62.799 | 72.222 | 0.00 | 0.00 | 0.00 | 4.79 |
5210 | 7217 | 3.470888 | CAGTAGGCCGTGGGAGGG | 61.471 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
5211 | 7218 | 3.470888 | CCAGTAGGCCGTGGGAGG | 61.471 | 72.222 | 12.74 | 1.31 | 0.00 | 4.30 |
5229 | 7236 | 3.358932 | AATGGGCCGGCCAACTAGG | 62.359 | 63.158 | 44.46 | 0.00 | 41.84 | 3.02 |
5230 | 7237 | 1.823899 | GAATGGGCCGGCCAACTAG | 60.824 | 63.158 | 44.46 | 0.00 | 37.98 | 2.57 |
5231 | 7238 | 2.274104 | GAATGGGCCGGCCAACTA | 59.726 | 61.111 | 44.46 | 27.85 | 37.98 | 2.24 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.