Multiple sequence alignment - TraesCS1A01G111700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G111700 | chr1A | 100.000 | 3581 | 0 | 0 | 1 | 3581 | 112945251 | 112941671 | 0.000000e+00 | 6613.0 |
1 | TraesCS1A01G111700 | chr1D | 92.051 | 1346 | 67 | 16 | 653 | 1981 | 109478788 | 109477466 | 0.000000e+00 | 1857.0 |
2 | TraesCS1A01G111700 | chr1D | 93.323 | 674 | 35 | 5 | 2102 | 2775 | 109477297 | 109476634 | 0.000000e+00 | 987.0 |
3 | TraesCS1A01G111700 | chr1D | 87.440 | 828 | 49 | 18 | 2776 | 3581 | 109476435 | 109475641 | 0.000000e+00 | 902.0 |
4 | TraesCS1A01G111700 | chr1D | 92.361 | 288 | 13 | 5 | 297 | 579 | 109479457 | 109479174 | 5.570000e-108 | 401.0 |
5 | TraesCS1A01G111700 | chr1D | 94.857 | 175 | 8 | 1 | 2 | 176 | 109479694 | 109479521 | 4.560000e-69 | 272.0 |
6 | TraesCS1A01G111700 | chr1B | 92.769 | 1051 | 59 | 6 | 945 | 1981 | 165077836 | 165076789 | 0.000000e+00 | 1504.0 |
7 | TraesCS1A01G111700 | chr1B | 91.768 | 741 | 40 | 5 | 2861 | 3581 | 165075750 | 165075011 | 0.000000e+00 | 1011.0 |
8 | TraesCS1A01G111700 | chr1B | 93.421 | 684 | 30 | 11 | 2102 | 2775 | 165076618 | 165075940 | 0.000000e+00 | 1000.0 |
9 | TraesCS1A01G111700 | chr1B | 93.697 | 238 | 8 | 3 | 317 | 548 | 165078550 | 165078314 | 2.050000e-92 | 350.0 |
10 | TraesCS1A01G111700 | chr1B | 94.286 | 175 | 9 | 1 | 2 | 176 | 165078933 | 165078760 | 2.120000e-67 | 267.0 |
11 | TraesCS1A01G111700 | chr1B | 94.737 | 38 | 1 | 1 | 308 | 344 | 458183257 | 458183294 | 1.390000e-04 | 58.4 |
12 | TraesCS1A01G111700 | chr3D | 82.805 | 221 | 31 | 7 | 2158 | 2375 | 453630082 | 453630298 | 1.310000e-44 | 191.0 |
13 | TraesCS1A01G111700 | chr3A | 96.330 | 109 | 4 | 0 | 174 | 282 | 41179433 | 41179325 | 2.840000e-41 | 180.0 |
14 | TraesCS1A01G111700 | chr3A | 83.333 | 198 | 25 | 8 | 2158 | 2352 | 595644833 | 595645025 | 3.670000e-40 | 176.0 |
15 | TraesCS1A01G111700 | chr3A | 95.370 | 108 | 5 | 0 | 174 | 281 | 603893496 | 603893603 | 4.750000e-39 | 172.0 |
16 | TraesCS1A01G111700 | chr3A | 89.922 | 129 | 13 | 0 | 167 | 295 | 620765645 | 620765517 | 2.210000e-37 | 167.0 |
17 | TraesCS1A01G111700 | chr3A | 97.143 | 35 | 1 | 0 | 307 | 341 | 667345242 | 667345276 | 3.860000e-05 | 60.2 |
18 | TraesCS1A01G111700 | chr4A | 96.296 | 108 | 4 | 0 | 174 | 281 | 343784074 | 343784181 | 1.020000e-40 | 178.0 |
19 | TraesCS1A01G111700 | chr4A | 91.057 | 123 | 9 | 2 | 162 | 284 | 327750646 | 327750526 | 7.950000e-37 | 165.0 |
20 | TraesCS1A01G111700 | chr3B | 81.057 | 227 | 34 | 8 | 2158 | 2380 | 596048312 | 596048533 | 4.750000e-39 | 172.0 |
21 | TraesCS1A01G111700 | chr6D | 94.495 | 109 | 6 | 0 | 173 | 281 | 103085340 | 103085448 | 6.150000e-38 | 169.0 |
22 | TraesCS1A01G111700 | chr7A | 92.982 | 114 | 8 | 0 | 169 | 282 | 387738628 | 387738515 | 2.210000e-37 | 167.0 |
23 | TraesCS1A01G111700 | chr7A | 90.400 | 125 | 10 | 2 | 174 | 298 | 724129933 | 724130055 | 2.860000e-36 | 163.0 |
24 | TraesCS1A01G111700 | chr7D | 90.000 | 120 | 11 | 1 | 164 | 283 | 379324121 | 379324239 | 1.720000e-33 | 154.0 |
25 | TraesCS1A01G111700 | chr5D | 93.182 | 44 | 3 | 0 | 297 | 340 | 420962305 | 420962262 | 8.300000e-07 | 65.8 |
26 | TraesCS1A01G111700 | chr6A | 89.583 | 48 | 5 | 0 | 295 | 342 | 572166217 | 572166264 | 1.070000e-05 | 62.1 |
27 | TraesCS1A01G111700 | chr6A | 89.583 | 48 | 3 | 2 | 292 | 339 | 135229345 | 135229300 | 3.860000e-05 | 60.2 |
28 | TraesCS1A01G111700 | chr6B | 90.698 | 43 | 4 | 0 | 294 | 336 | 364704767 | 364704809 | 1.390000e-04 | 58.4 |
29 | TraesCS1A01G111700 | chr6B | 94.595 | 37 | 2 | 0 | 308 | 344 | 507405936 | 507405972 | 1.390000e-04 | 58.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G111700 | chr1A | 112941671 | 112945251 | 3580 | True | 6613.0 | 6613 | 100.0000 | 1 | 3581 | 1 | chr1A.!!$R1 | 3580 |
1 | TraesCS1A01G111700 | chr1D | 109475641 | 109479694 | 4053 | True | 883.8 | 1857 | 92.0064 | 2 | 3581 | 5 | chr1D.!!$R1 | 3579 |
2 | TraesCS1A01G111700 | chr1B | 165075011 | 165078933 | 3922 | True | 826.4 | 1504 | 93.1882 | 2 | 3581 | 5 | chr1B.!!$R1 | 3579 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
923 | 1417 | 0.671781 | ACACAAGCTAAGCGGCAGAG | 60.672 | 55.0 | 1.45 | 0.0 | 34.17 | 3.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2836 | 3613 | 0.247736 | CTAGCTTGTTGGACTCGGCT | 59.752 | 55.0 | 0.0 | 0.0 | 0.0 | 5.52 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
41 | 42 | 5.279456 | GCCTTGTTCCTTGGAACATTAACAT | 60.279 | 40.000 | 28.85 | 0.00 | 43.54 | 2.71 |
189 | 190 | 3.505464 | AATGGTACTCTCTCCGTTTCG | 57.495 | 47.619 | 0.00 | 0.00 | 29.82 | 3.46 |
190 | 191 | 2.189594 | TGGTACTCTCTCCGTTTCGA | 57.810 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
191 | 192 | 2.507484 | TGGTACTCTCTCCGTTTCGAA | 58.493 | 47.619 | 0.00 | 0.00 | 0.00 | 3.71 |
192 | 193 | 3.087031 | TGGTACTCTCTCCGTTTCGAAT | 58.913 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
193 | 194 | 3.508793 | TGGTACTCTCTCCGTTTCGAATT | 59.491 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
194 | 195 | 4.701651 | TGGTACTCTCTCCGTTTCGAATTA | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
195 | 196 | 5.033507 | GGTACTCTCTCCGTTTCGAATTAC | 58.966 | 45.833 | 0.00 | 0.00 | 0.00 | 1.89 |
196 | 197 | 5.163673 | GGTACTCTCTCCGTTTCGAATTACT | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.24 |
197 | 198 | 4.984205 | ACTCTCTCCGTTTCGAATTACTC | 58.016 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
210 | 211 | 4.334443 | CGAATTACTCGTTGCAGAAATGG | 58.666 | 43.478 | 0.00 | 0.00 | 42.89 | 3.16 |
211 | 212 | 4.092821 | CGAATTACTCGTTGCAGAAATGGA | 59.907 | 41.667 | 0.00 | 0.00 | 42.89 | 3.41 |
212 | 213 | 5.220662 | CGAATTACTCGTTGCAGAAATGGAT | 60.221 | 40.000 | 0.00 | 0.00 | 42.89 | 3.41 |
213 | 214 | 4.944962 | TTACTCGTTGCAGAAATGGATG | 57.055 | 40.909 | 0.00 | 0.00 | 0.00 | 3.51 |
214 | 215 | 2.783135 | ACTCGTTGCAGAAATGGATGT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 3.06 |
215 | 216 | 3.937814 | ACTCGTTGCAGAAATGGATGTA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
216 | 217 | 4.517285 | ACTCGTTGCAGAAATGGATGTAT | 58.483 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
217 | 218 | 4.572389 | ACTCGTTGCAGAAATGGATGTATC | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
218 | 219 | 4.769688 | TCGTTGCAGAAATGGATGTATCT | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
219 | 220 | 5.912892 | TCGTTGCAGAAATGGATGTATCTA | 58.087 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
220 | 221 | 5.985530 | TCGTTGCAGAAATGGATGTATCTAG | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
221 | 222 | 5.985530 | CGTTGCAGAAATGGATGTATCTAGA | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
222 | 223 | 6.648310 | CGTTGCAGAAATGGATGTATCTAGAT | 59.352 | 38.462 | 10.73 | 10.73 | 0.00 | 1.98 |
223 | 224 | 7.359849 | CGTTGCAGAAATGGATGTATCTAGATG | 60.360 | 40.741 | 15.79 | 0.00 | 0.00 | 2.90 |
224 | 225 | 7.071069 | TGCAGAAATGGATGTATCTAGATGT | 57.929 | 36.000 | 15.79 | 1.25 | 0.00 | 3.06 |
225 | 226 | 8.193953 | TGCAGAAATGGATGTATCTAGATGTA | 57.806 | 34.615 | 15.79 | 4.44 | 0.00 | 2.29 |
226 | 227 | 8.819845 | TGCAGAAATGGATGTATCTAGATGTAT | 58.180 | 33.333 | 15.79 | 9.11 | 0.00 | 2.29 |
227 | 228 | 9.664332 | GCAGAAATGGATGTATCTAGATGTATT | 57.336 | 33.333 | 15.79 | 4.32 | 0.00 | 1.89 |
256 | 257 | 9.606631 | AGTTCTAAATACATCCATTTCTGAGAC | 57.393 | 33.333 | 0.00 | 0.00 | 30.84 | 3.36 |
257 | 258 | 8.543774 | GTTCTAAATACATCCATTTCTGAGACG | 58.456 | 37.037 | 0.00 | 0.00 | 30.84 | 4.18 |
258 | 259 | 8.007405 | TCTAAATACATCCATTTCTGAGACGA | 57.993 | 34.615 | 0.00 | 0.00 | 30.84 | 4.20 |
259 | 260 | 8.138074 | TCTAAATACATCCATTTCTGAGACGAG | 58.862 | 37.037 | 0.00 | 0.00 | 30.84 | 4.18 |
260 | 261 | 5.860941 | ATACATCCATTTCTGAGACGAGT | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 4.18 |
261 | 262 | 6.961360 | ATACATCCATTTCTGAGACGAGTA | 57.039 | 37.500 | 0.00 | 0.00 | 0.00 | 2.59 |
262 | 263 | 5.661056 | ACATCCATTTCTGAGACGAGTAA | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
263 | 264 | 6.227298 | ACATCCATTTCTGAGACGAGTAAT | 57.773 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
264 | 265 | 6.644347 | ACATCCATTTCTGAGACGAGTAATT | 58.356 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
265 | 266 | 7.106239 | ACATCCATTTCTGAGACGAGTAATTT | 58.894 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
266 | 267 | 6.968131 | TCCATTTCTGAGACGAGTAATTTG | 57.032 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
267 | 268 | 5.874810 | TCCATTTCTGAGACGAGTAATTTGG | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
268 | 269 | 5.874810 | CCATTTCTGAGACGAGTAATTTGGA | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
269 | 270 | 6.371548 | CCATTTCTGAGACGAGTAATTTGGAA | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
270 | 271 | 6.780706 | TTTCTGAGACGAGTAATTTGGAAC | 57.219 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
271 | 272 | 4.482386 | TCTGAGACGAGTAATTTGGAACG | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
272 | 273 | 3.581755 | TGAGACGAGTAATTTGGAACGG | 58.418 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
273 | 274 | 3.256383 | TGAGACGAGTAATTTGGAACGGA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
274 | 275 | 3.846360 | AGACGAGTAATTTGGAACGGAG | 58.154 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
275 | 276 | 2.928116 | GACGAGTAATTTGGAACGGAGG | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
276 | 277 | 2.564062 | ACGAGTAATTTGGAACGGAGGA | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
277 | 278 | 3.007182 | ACGAGTAATTTGGAACGGAGGAA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
291 | 292 | 5.776173 | ACGGAGGAAGTAGATATGAACAG | 57.224 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
369 | 544 | 6.075949 | AGCCAAGCATATGGATGATATTCT | 57.924 | 37.500 | 4.56 | 0.00 | 43.54 | 2.40 |
534 | 714 | 7.951591 | AGTACCAAATTAATATGTGCCCATTC | 58.048 | 34.615 | 0.00 | 0.00 | 32.29 | 2.67 |
553 | 733 | 6.554605 | CCCATTCTGTCCAATATTAAACCCAT | 59.445 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
579 | 759 | 5.993748 | TTCAAAACTCATACCCAATTCCC | 57.006 | 39.130 | 0.00 | 0.00 | 0.00 | 3.97 |
580 | 760 | 5.004361 | TCAAAACTCATACCCAATTCCCA | 57.996 | 39.130 | 0.00 | 0.00 | 0.00 | 4.37 |
581 | 761 | 5.398236 | TCAAAACTCATACCCAATTCCCAA | 58.602 | 37.500 | 0.00 | 0.00 | 0.00 | 4.12 |
582 | 762 | 5.841237 | TCAAAACTCATACCCAATTCCCAAA | 59.159 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
583 | 763 | 5.738619 | AAACTCATACCCAATTCCCAAAC | 57.261 | 39.130 | 0.00 | 0.00 | 0.00 | 2.93 |
584 | 764 | 3.708451 | ACTCATACCCAATTCCCAAACC | 58.292 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
585 | 765 | 3.076785 | ACTCATACCCAATTCCCAAACCA | 59.923 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
586 | 766 | 3.436243 | TCATACCCAATTCCCAAACCAC | 58.564 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
587 | 767 | 3.076785 | TCATACCCAATTCCCAAACCACT | 59.923 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
588 | 768 | 2.487746 | ACCCAATTCCCAAACCACTT | 57.512 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
589 | 769 | 2.325484 | ACCCAATTCCCAAACCACTTC | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 3.01 |
590 | 770 | 1.623311 | CCCAATTCCCAAACCACTTCC | 59.377 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
591 | 771 | 2.324541 | CCAATTCCCAAACCACTTCCA | 58.675 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
592 | 772 | 2.703007 | CCAATTCCCAAACCACTTCCAA | 59.297 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
593 | 773 | 3.244181 | CCAATTCCCAAACCACTTCCAAG | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
594 | 774 | 3.611025 | ATTCCCAAACCACTTCCAAGA | 57.389 | 42.857 | 0.00 | 0.00 | 0.00 | 3.02 |
595 | 775 | 2.358322 | TCCCAAACCACTTCCAAGAC | 57.642 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
596 | 776 | 1.133606 | TCCCAAACCACTTCCAAGACC | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
597 | 777 | 1.133482 | CCCAAACCACTTCCAAGACCT | 60.133 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
598 | 778 | 2.107552 | CCCAAACCACTTCCAAGACCTA | 59.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.08 |
599 | 779 | 3.146847 | CCAAACCACTTCCAAGACCTAC | 58.853 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
600 | 780 | 3.434453 | CCAAACCACTTCCAAGACCTACA | 60.434 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
601 | 781 | 3.771577 | AACCACTTCCAAGACCTACAG | 57.228 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
602 | 782 | 1.978580 | ACCACTTCCAAGACCTACAGG | 59.021 | 52.381 | 0.00 | 0.00 | 42.17 | 4.00 |
603 | 783 | 1.339151 | CCACTTCCAAGACCTACAGGC | 60.339 | 57.143 | 0.00 | 0.00 | 39.32 | 4.85 |
604 | 784 | 1.625818 | CACTTCCAAGACCTACAGGCT | 59.374 | 52.381 | 0.00 | 0.00 | 39.32 | 4.58 |
605 | 785 | 2.039084 | CACTTCCAAGACCTACAGGCTT | 59.961 | 50.000 | 0.00 | 0.00 | 39.32 | 4.35 |
606 | 786 | 2.711547 | ACTTCCAAGACCTACAGGCTTT | 59.288 | 45.455 | 0.00 | 0.00 | 39.32 | 3.51 |
607 | 787 | 3.138468 | ACTTCCAAGACCTACAGGCTTTT | 59.862 | 43.478 | 0.00 | 0.00 | 39.32 | 2.27 |
608 | 788 | 3.140325 | TCCAAGACCTACAGGCTTTTG | 57.860 | 47.619 | 0.00 | 0.00 | 39.32 | 2.44 |
609 | 789 | 2.162681 | CCAAGACCTACAGGCTTTTGG | 58.837 | 52.381 | 10.05 | 10.05 | 39.32 | 3.28 |
610 | 790 | 1.541588 | CAAGACCTACAGGCTTTTGGC | 59.458 | 52.381 | 0.87 | 0.00 | 46.43 | 4.52 |
633 | 813 | 7.864307 | GCTATTGCCAAAGCTAATCTTAATG | 57.136 | 36.000 | 0.00 | 0.00 | 40.80 | 1.90 |
634 | 814 | 6.865205 | GCTATTGCCAAAGCTAATCTTAATGG | 59.135 | 38.462 | 0.00 | 0.00 | 40.80 | 3.16 |
635 | 815 | 5.596836 | TTGCCAAAGCTAATCTTAATGGG | 57.403 | 39.130 | 0.00 | 0.00 | 40.80 | 4.00 |
636 | 816 | 3.960102 | TGCCAAAGCTAATCTTAATGGGG | 59.040 | 43.478 | 0.00 | 0.00 | 40.80 | 4.96 |
637 | 817 | 3.321968 | GCCAAAGCTAATCTTAATGGGGG | 59.678 | 47.826 | 0.00 | 0.00 | 34.62 | 5.40 |
710 | 1202 | 6.414732 | TGCACACACCTCTTATTAATTAGCT | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
714 | 1206 | 6.058183 | CACACCTCTTATTAATTAGCTGCCT | 58.942 | 40.000 | 0.00 | 0.00 | 0.00 | 4.75 |
715 | 1207 | 6.017605 | CACACCTCTTATTAATTAGCTGCCTG | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 4.85 |
751 | 1243 | 4.326826 | ACAAGTCAACATACACCAGGATG | 58.673 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
769 | 1261 | 1.126488 | TGCCTTCCAAATGGTGCAAA | 58.874 | 45.000 | 10.18 | 0.00 | 34.37 | 3.68 |
799 | 1291 | 7.881142 | ACATACATCTAGCAGTACAATCTCTC | 58.119 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
824 | 1316 | 6.105333 | TGACAGCAGCAAACTTATTTTTGTT | 58.895 | 32.000 | 0.00 | 0.00 | 38.51 | 2.83 |
873 | 1365 | 5.543507 | ACATCTCTCTCTCTCTCTCTCTC | 57.456 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
874 | 1366 | 5.215069 | ACATCTCTCTCTCTCTCTCTCTCT | 58.785 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
875 | 1367 | 5.304101 | ACATCTCTCTCTCTCTCTCTCTCTC | 59.696 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
876 | 1368 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
877 | 1369 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
891 | 1385 | 4.646945 | TCTCTCTCTCTCTCTCTCTCTCAC | 59.353 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
892 | 1386 | 4.352893 | TCTCTCTCTCTCTCTCTCTCACA | 58.647 | 47.826 | 0.00 | 0.00 | 0.00 | 3.58 |
893 | 1387 | 4.160439 | TCTCTCTCTCTCTCTCTCTCACAC | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
894 | 1388 | 3.837731 | TCTCTCTCTCTCTCTCTCACACA | 59.162 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
895 | 1389 | 3.935203 | CTCTCTCTCTCTCTCTCACACAC | 59.065 | 52.174 | 0.00 | 0.00 | 0.00 | 3.82 |
896 | 1390 | 3.326297 | TCTCTCTCTCTCTCTCACACACA | 59.674 | 47.826 | 0.00 | 0.00 | 0.00 | 3.72 |
897 | 1391 | 3.407698 | TCTCTCTCTCTCTCACACACAC | 58.592 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
898 | 1392 | 3.145286 | CTCTCTCTCTCTCACACACACA | 58.855 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
899 | 1393 | 2.881513 | TCTCTCTCTCTCACACACACAC | 59.118 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
900 | 1394 | 2.620585 | CTCTCTCTCTCACACACACACA | 59.379 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
901 | 1395 | 2.359214 | TCTCTCTCTCACACACACACAC | 59.641 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
902 | 1396 | 2.099405 | TCTCTCTCACACACACACACA | 58.901 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
903 | 1397 | 2.159240 | TCTCTCTCACACACACACACAC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
904 | 1398 | 1.548269 | TCTCTCACACACACACACACA | 59.452 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
905 | 1399 | 1.660607 | CTCTCACACACACACACACAC | 59.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
906 | 1400 | 1.001406 | TCTCACACACACACACACACA | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
907 | 1401 | 1.128507 | CTCACACACACACACACACAC | 59.871 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
915 | 1409 | 2.677836 | ACACACACACACACAAGCTAAG | 59.322 | 45.455 | 0.00 | 0.00 | 0.00 | 2.18 |
923 | 1417 | 0.671781 | ACACAAGCTAAGCGGCAGAG | 60.672 | 55.000 | 1.45 | 0.00 | 34.17 | 3.35 |
1063 | 1557 | 6.688578 | TCCGAAATACCAAGCTAGATCATAC | 58.311 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
1098 | 1592 | 8.752005 | TTTAGGAATAGCTAAATTCATGCACT | 57.248 | 30.769 | 10.62 | 2.23 | 37.56 | 4.40 |
1138 | 1632 | 2.090760 | TGCTCAAGCTTTGTTGTGTCA | 58.909 | 42.857 | 0.00 | 0.00 | 42.66 | 3.58 |
1152 | 1646 | 2.202650 | GTCAATGGTGCATGGCGC | 60.203 | 61.111 | 0.00 | 0.00 | 42.89 | 6.53 |
1239 | 1735 | 9.405587 | GCTATATACATCTTCTTCTTCAGTGAC | 57.594 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
1398 | 1894 | 3.993614 | GATGACCCCATGTGCCGCA | 62.994 | 63.158 | 0.00 | 0.00 | 32.09 | 5.69 |
1446 | 1942 | 3.706373 | GAGTGCCCCTTCTCGCCA | 61.706 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
1503 | 1999 | 3.777925 | CACAAGGTCTTCGGCGCG | 61.778 | 66.667 | 0.00 | 0.00 | 0.00 | 6.86 |
1524 | 2020 | 0.723981 | GCAACGTCTCCAAGATGCTC | 59.276 | 55.000 | 0.00 | 0.00 | 34.63 | 4.26 |
1541 | 2037 | 8.997323 | CAAGATGCTCCTGGTAATCTAATTTAG | 58.003 | 37.037 | 8.30 | 0.00 | 0.00 | 1.85 |
1545 | 2041 | 8.777578 | TGCTCCTGGTAATCTAATTTAGTCTA | 57.222 | 34.615 | 3.45 | 0.00 | 0.00 | 2.59 |
1576 | 2074 | 4.099881 | TCCATTGCTTGCTCTTTGACTTTT | 59.900 | 37.500 | 0.00 | 0.00 | 0.00 | 2.27 |
1640 | 2138 | 3.529533 | TGGTTTTGTGCCACTGATTTTG | 58.470 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
1684 | 2182 | 2.760650 | TGAATACCTCACATCTCGCAGT | 59.239 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
1697 | 2195 | 7.222805 | TCACATCTCGCAGTATTTCATTAGTTC | 59.777 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
1721 | 2219 | 6.015519 | TCACATGGTATTTCTGGAAACCTTTG | 60.016 | 38.462 | 0.00 | 3.22 | 32.51 | 2.77 |
1738 | 2236 | 9.581099 | GAAACCTTTGTTAACAAGAGAATTTCA | 57.419 | 29.630 | 26.04 | 13.68 | 37.15 | 2.69 |
1751 | 2249 | 7.599998 | ACAAGAGAATTTCATTTGTGGTATTGC | 59.400 | 33.333 | 14.10 | 0.00 | 31.34 | 3.56 |
1765 | 2263 | 2.884639 | GGTATTGCCACAACTCACAAGT | 59.115 | 45.455 | 0.00 | 0.00 | 35.48 | 3.16 |
1779 | 2277 | 0.820891 | ACAAGTCAAGGCAGCAGTGG | 60.821 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1806 | 2304 | 4.335416 | TCTTGCAGATCCAAAACCCTAAG | 58.665 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
1812 | 2310 | 2.984435 | TCCAAAACCCTAAGTTCCCC | 57.016 | 50.000 | 0.00 | 0.00 | 37.88 | 4.81 |
1826 | 2324 | 1.062505 | GTTCCCCTGGATCTCCTCTCT | 60.063 | 57.143 | 0.00 | 0.00 | 36.82 | 3.10 |
1827 | 2325 | 1.324014 | TCCCCTGGATCTCCTCTCTT | 58.676 | 55.000 | 0.00 | 0.00 | 36.82 | 2.85 |
1848 | 2346 | 3.495670 | TTTTCCATTATGTTTCGGGCG | 57.504 | 42.857 | 0.00 | 0.00 | 0.00 | 6.13 |
1871 | 2376 | 7.096023 | GGCGTAATCACTAGAGATTTGTGTATG | 60.096 | 40.741 | 18.70 | 8.53 | 38.97 | 2.39 |
1872 | 2377 | 7.096023 | GCGTAATCACTAGAGATTTGTGTATGG | 60.096 | 40.741 | 18.70 | 3.84 | 38.97 | 2.74 |
1881 | 2387 | 5.639506 | AGAGATTTGTGTATGGTTTGAGTCG | 59.360 | 40.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1883 | 2389 | 2.535012 | TGTGTATGGTTTGAGTCGCA | 57.465 | 45.000 | 0.00 | 0.00 | 0.00 | 5.10 |
1884 | 2390 | 3.052455 | TGTGTATGGTTTGAGTCGCAT | 57.948 | 42.857 | 0.00 | 0.00 | 0.00 | 4.73 |
1885 | 2391 | 3.407698 | TGTGTATGGTTTGAGTCGCATT | 58.592 | 40.909 | 0.00 | 0.00 | 0.00 | 3.56 |
1897 | 2403 | 3.004629 | TGAGTCGCATTTGTGCATCTTTT | 59.995 | 39.130 | 0.00 | 0.00 | 34.41 | 2.27 |
1901 | 2407 | 3.735240 | TCGCATTTGTGCATCTTTTGTTC | 59.265 | 39.130 | 0.00 | 0.00 | 34.41 | 3.18 |
1903 | 2409 | 3.120923 | GCATTTGTGCATCTTTTGTTCCG | 60.121 | 43.478 | 0.00 | 0.00 | 34.41 | 4.30 |
1921 | 2427 | 7.917720 | TGTTCCGTAAAAATGCTAAAAGTTC | 57.082 | 32.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1981 | 2491 | 5.629125 | CCTCCCAAAATCCAAAATCCAAAA | 58.371 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
1982 | 2492 | 6.247676 | CCTCCCAAAATCCAAAATCCAAAAT | 58.752 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
1983 | 2493 | 6.375174 | CCTCCCAAAATCCAAAATCCAAAATC | 59.625 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
1984 | 2494 | 6.244654 | TCCCAAAATCCAAAATCCAAAATCC | 58.755 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1985 | 2495 | 6.008960 | CCCAAAATCCAAAATCCAAAATCCA | 58.991 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1986 | 2496 | 6.492772 | CCCAAAATCCAAAATCCAAAATCCAA | 59.507 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1987 | 2497 | 7.015001 | CCCAAAATCCAAAATCCAAAATCCAAA | 59.985 | 33.333 | 0.00 | 0.00 | 0.00 | 3.28 |
1988 | 2498 | 8.586744 | CCAAAATCCAAAATCCAAAATCCAAAT | 58.413 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1989 | 2499 | 9.984190 | CAAAATCCAAAATCCAAAATCCAAATT | 57.016 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
1995 | 2505 | 8.631797 | CCAAAATCCAAAATCCAAATTGAAGTT | 58.368 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2002 | 2512 | 6.452757 | AAATCCAAATTGAAGTTTCCCCAT | 57.547 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
2003 | 2513 | 6.452757 | AATCCAAATTGAAGTTTCCCCATT | 57.547 | 33.333 | 0.00 | 0.00 | 0.00 | 3.16 |
2004 | 2514 | 7.566658 | AATCCAAATTGAAGTTTCCCCATTA | 57.433 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2005 | 2515 | 7.754091 | ATCCAAATTGAAGTTTCCCCATTAT | 57.246 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2006 | 2516 | 7.181569 | TCCAAATTGAAGTTTCCCCATTATC | 57.818 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2008 | 2518 | 7.402650 | TCCAAATTGAAGTTTCCCCATTATCAT | 59.597 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
2009 | 2519 | 7.712205 | CCAAATTGAAGTTTCCCCATTATCATC | 59.288 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
2011 | 2521 | 7.830099 | ATTGAAGTTTCCCCATTATCATCTC | 57.170 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
2012 | 2522 | 6.325993 | TGAAGTTTCCCCATTATCATCTCA | 57.674 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
2013 | 2523 | 6.730447 | TGAAGTTTCCCCATTATCATCTCAA | 58.270 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2014 | 2524 | 6.830324 | TGAAGTTTCCCCATTATCATCTCAAG | 59.170 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2015 | 2525 | 6.581388 | AGTTTCCCCATTATCATCTCAAGA | 57.419 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
2016 | 2526 | 6.360618 | AGTTTCCCCATTATCATCTCAAGAC | 58.639 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2019 | 2529 | 5.933617 | TCCCCATTATCATCTCAAGACAAG | 58.066 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2020 | 2530 | 5.429762 | TCCCCATTATCATCTCAAGACAAGT | 59.570 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2021 | 2531 | 6.615316 | TCCCCATTATCATCTCAAGACAAGTA | 59.385 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
2023 | 2533 | 8.597167 | CCCCATTATCATCTCAAGACAAGTATA | 58.403 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2024 | 2534 | 9.429359 | CCCATTATCATCTCAAGACAAGTATAC | 57.571 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2031 | 2541 | 6.471233 | TCTCAAGACAAGTATACATCAGGG | 57.529 | 41.667 | 5.50 | 0.00 | 0.00 | 4.45 |
2050 | 2578 | 7.360113 | TCAGGGCATTTCTCTTTTACTTTTT | 57.640 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2079 | 2607 | 5.657745 | AGAGAGAGATGTGTGACTTCATCAT | 59.342 | 40.000 | 17.80 | 9.73 | 41.74 | 2.45 |
2080 | 2608 | 5.904941 | AGAGAGATGTGTGACTTCATCATC | 58.095 | 41.667 | 17.80 | 15.18 | 41.74 | 2.92 |
2081 | 2609 | 5.421374 | AGAGAGATGTGTGACTTCATCATCA | 59.579 | 40.000 | 19.75 | 4.96 | 41.74 | 3.07 |
2082 | 2610 | 6.098552 | AGAGAGATGTGTGACTTCATCATCAT | 59.901 | 38.462 | 19.75 | 12.73 | 41.74 | 2.45 |
2083 | 2611 | 6.651086 | AGAGATGTGTGACTTCATCATCATT | 58.349 | 36.000 | 19.75 | 10.74 | 41.74 | 2.57 |
2084 | 2612 | 7.110810 | AGAGATGTGTGACTTCATCATCATTT | 58.889 | 34.615 | 19.75 | 7.88 | 41.74 | 2.32 |
2086 | 2614 | 7.535997 | AGATGTGTGACTTCATCATCATTTTG | 58.464 | 34.615 | 19.75 | 0.00 | 41.74 | 2.44 |
2087 | 2615 | 5.463286 | TGTGTGACTTCATCATCATTTTGC | 58.537 | 37.500 | 0.00 | 0.00 | 40.28 | 3.68 |
2088 | 2616 | 5.242171 | TGTGTGACTTCATCATCATTTTGCT | 59.758 | 36.000 | 0.00 | 0.00 | 40.28 | 3.91 |
2089 | 2617 | 5.798934 | GTGTGACTTCATCATCATTTTGCTC | 59.201 | 40.000 | 0.00 | 0.00 | 40.28 | 4.26 |
2090 | 2618 | 5.474189 | TGTGACTTCATCATCATTTTGCTCA | 59.526 | 36.000 | 0.00 | 0.00 | 40.28 | 4.26 |
2091 | 2619 | 6.016108 | TGTGACTTCATCATCATTTTGCTCAA | 60.016 | 34.615 | 0.00 | 0.00 | 40.28 | 3.02 |
2092 | 2620 | 6.864685 | GTGACTTCATCATCATTTTGCTCAAA | 59.135 | 34.615 | 0.00 | 0.00 | 40.28 | 2.69 |
2093 | 2621 | 7.383029 | GTGACTTCATCATCATTTTGCTCAAAA | 59.617 | 33.333 | 9.83 | 9.83 | 40.90 | 2.44 |
2097 | 2625 | 7.177832 | TCATCATCATTTTGCTCAAAATCCT | 57.822 | 32.000 | 15.38 | 5.66 | 46.01 | 3.24 |
2098 | 2626 | 7.617225 | TCATCATCATTTTGCTCAAAATCCTT | 58.383 | 30.769 | 15.38 | 3.82 | 46.01 | 3.36 |
2099 | 2627 | 7.762615 | TCATCATCATTTTGCTCAAAATCCTTC | 59.237 | 33.333 | 15.38 | 0.00 | 46.01 | 3.46 |
2100 | 2628 | 6.995364 | TCATCATTTTGCTCAAAATCCTTCA | 58.005 | 32.000 | 15.38 | 1.88 | 46.01 | 3.02 |
2129 | 2697 | 1.880340 | CCGATCGAAGTGCTCCAGC | 60.880 | 63.158 | 18.66 | 0.00 | 42.50 | 4.85 |
2130 | 2698 | 1.140589 | CGATCGAAGTGCTCCAGCT | 59.859 | 57.895 | 10.26 | 0.00 | 42.66 | 4.24 |
2131 | 2699 | 1.144565 | CGATCGAAGTGCTCCAGCTG | 61.145 | 60.000 | 10.26 | 6.78 | 42.66 | 4.24 |
2135 | 2712 | 2.034878 | TCGAAGTGCTCCAGCTGATAT | 58.965 | 47.619 | 17.39 | 0.00 | 42.66 | 1.63 |
2138 | 2715 | 4.281941 | TCGAAGTGCTCCAGCTGATATTAT | 59.718 | 41.667 | 17.39 | 0.00 | 42.66 | 1.28 |
2141 | 2718 | 6.309980 | CGAAGTGCTCCAGCTGATATTATTAG | 59.690 | 42.308 | 17.39 | 0.11 | 42.66 | 1.73 |
2142 | 2719 | 5.486526 | AGTGCTCCAGCTGATATTATTAGC | 58.513 | 41.667 | 17.39 | 11.45 | 41.73 | 3.09 |
2152 | 2729 | 6.909643 | GCTGATATTATTAGCTAACGCGTAC | 58.090 | 40.000 | 14.46 | 5.29 | 42.32 | 3.67 |
2157 | 2734 | 3.788333 | ATTAGCTAACGCGTACCTTGA | 57.212 | 42.857 | 14.46 | 0.00 | 42.32 | 3.02 |
2158 | 2735 | 2.549633 | TAGCTAACGCGTACCTTGAC | 57.450 | 50.000 | 14.46 | 0.00 | 42.32 | 3.18 |
2568 | 3145 | 1.358877 | TCACGCATGAGAATGTTCCG | 58.641 | 50.000 | 2.50 | 0.00 | 0.00 | 4.30 |
2570 | 3147 | 1.464608 | CACGCATGAGAATGTTCCGTT | 59.535 | 47.619 | 2.50 | 0.00 | 0.00 | 4.44 |
2615 | 3192 | 3.124976 | AGTCTAGCGTTAACGACTGAGAC | 59.875 | 47.826 | 31.03 | 28.47 | 43.02 | 3.36 |
2624 | 3201 | 5.287226 | GTTAACGACTGAGACCTTCTTTGA | 58.713 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
2702 | 3279 | 6.775594 | ATACTGGAATAACAGGCTTTTTCC | 57.224 | 37.500 | 0.00 | 0.00 | 42.75 | 3.13 |
2703 | 3280 | 4.479158 | ACTGGAATAACAGGCTTTTTCCA | 58.521 | 39.130 | 13.49 | 13.49 | 42.58 | 3.53 |
2738 | 3315 | 4.809673 | CTTTAATTTGTGTTCAGGGGAGC | 58.190 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
2743 | 3320 | 1.067295 | TGTGTTCAGGGGAGCTCATT | 58.933 | 50.000 | 17.19 | 0.00 | 0.00 | 2.57 |
2797 | 3574 | 9.330063 | CATGGTAGTGATTTCTAAATTGCTCTA | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2804 | 3581 | 9.578439 | GTGATTTCTAAATTGCTCTAATTTGCT | 57.422 | 29.630 | 7.63 | 0.00 | 45.90 | 3.91 |
2812 | 3589 | 5.880054 | TTGCTCTAATTTGCTAAGGTGTC | 57.120 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2821 | 3598 | 3.126001 | TGCTAAGGTGTCCAAGTCTTG | 57.874 | 47.619 | 5.53 | 5.53 | 0.00 | 3.02 |
2836 | 3613 | 1.073284 | GTCTTGGGAACACAAGCCCTA | 59.927 | 52.381 | 11.41 | 0.00 | 45.72 | 3.53 |
2839 | 3616 | 1.378646 | GGGAACACAAGCCCTAGCC | 60.379 | 63.158 | 0.00 | 0.00 | 41.31 | 3.93 |
2853 | 3630 | 0.247736 | CTAGCCGAGTCCAACAAGCT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.74 |
2854 | 3631 | 1.476891 | CTAGCCGAGTCCAACAAGCTA | 59.523 | 52.381 | 0.00 | 0.00 | 0.00 | 3.32 |
2855 | 3632 | 0.247736 | AGCCGAGTCCAACAAGCTAG | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.42 |
2856 | 3633 | 1.362406 | GCCGAGTCCAACAAGCTAGC | 61.362 | 60.000 | 6.62 | 6.62 | 0.00 | 3.42 |
2858 | 3635 | 1.687494 | CGAGTCCAACAAGCTAGCGC | 61.687 | 60.000 | 9.55 | 0.00 | 0.00 | 5.92 |
2859 | 3636 | 1.687494 | GAGTCCAACAAGCTAGCGCG | 61.687 | 60.000 | 9.55 | 0.00 | 42.32 | 6.86 |
2983 | 3778 | 4.091800 | CACATTTCATTTCGTTTCCATGCC | 59.908 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
3018 | 3813 | 4.832590 | ATGTAGCATACGTAGGAGACAC | 57.167 | 45.455 | 12.12 | 3.05 | 46.99 | 3.67 |
3062 | 3857 | 3.099905 | TCCATCTCCCCATACATCGATC | 58.900 | 50.000 | 0.00 | 0.00 | 0.00 | 3.69 |
3067 | 3879 | 3.832490 | TCTCCCCATACATCGATCGATTT | 59.168 | 43.478 | 27.45 | 23.28 | 31.62 | 2.17 |
3106 | 3918 | 0.874175 | TGAGAACAACGTCAGTGGCG | 60.874 | 55.000 | 17.03 | 17.03 | 0.00 | 5.69 |
3146 | 3958 | 0.657312 | TCTTTGACAACAGCAGCGTG | 59.343 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3165 | 3977 | 1.081094 | GCACATTCAAATGGCAAGGC | 58.919 | 50.000 | 7.58 | 0.00 | 40.70 | 4.35 |
3212 | 4024 | 7.015292 | TCCACAACTGTAGATTTGACTTCTAGT | 59.985 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
3223 | 4035 | 6.971726 | TTTGACTTCTAGTTGTCCTCAGTA | 57.028 | 37.500 | 12.69 | 0.00 | 32.67 | 2.74 |
3318 | 4130 | 8.940952 | GCAAACAAAACCATGGCTTATAATAAA | 58.059 | 29.630 | 13.04 | 0.00 | 0.00 | 1.40 |
3386 | 4198 | 8.258007 | TCTAACTATACCACTGGTCAAGATTTG | 58.742 | 37.037 | 3.21 | 3.24 | 37.09 | 2.32 |
3391 | 4203 | 5.262588 | ACCACTGGTCAAGATTTGAAAAC | 57.737 | 39.130 | 0.00 | 0.00 | 42.15 | 2.43 |
3465 | 4277 | 6.238211 | GGAACAATTCAGAACATGGACGATAG | 60.238 | 42.308 | 0.00 | 0.00 | 46.19 | 2.08 |
3490 | 4302 | 3.564644 | CGTACCATCTGAGAACTATCGGT | 59.435 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
3491 | 4303 | 4.753610 | CGTACCATCTGAGAACTATCGGTA | 59.246 | 45.833 | 0.00 | 0.00 | 0.00 | 4.02 |
3492 | 4304 | 5.333952 | CGTACCATCTGAGAACTATCGGTAC | 60.334 | 48.000 | 0.00 | 0.00 | 42.63 | 3.34 |
3525 | 4339 | 4.329462 | TGCAGTACACTGTACATTCACA | 57.671 | 40.909 | 19.34 | 8.33 | 45.45 | 3.58 |
3548 | 4362 | 1.266718 | TGAAAATCTGCAGGCGTTCAC | 59.733 | 47.619 | 15.13 | 5.62 | 0.00 | 3.18 |
3554 | 4368 | 2.676471 | GCAGGCGTTCACCCCAAT | 60.676 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
3561 | 4375 | 2.034179 | GGCGTTCACCCCAATAATTAGC | 59.966 | 50.000 | 0.00 | 0.00 | 0.00 | 3.09 |
3569 | 4383 | 1.156736 | CCAATAATTAGCGGCCCTCG | 58.843 | 55.000 | 0.00 | 0.00 | 42.76 | 4.63 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 0.685660 | GGCCCTAAATACTCTCCCCG | 59.314 | 60.000 | 0.00 | 0.00 | 0.00 | 5.73 |
171 | 172 | 2.189594 | TCGAAACGGAGAGAGTACCA | 57.810 | 50.000 | 0.00 | 0.00 | 0.00 | 3.25 |
173 | 174 | 5.878133 | AGTAATTCGAAACGGAGAGAGTAC | 58.122 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
174 | 175 | 6.116680 | GAGTAATTCGAAACGGAGAGAGTA | 57.883 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
175 | 176 | 4.984205 | GAGTAATTCGAAACGGAGAGAGT | 58.016 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
189 | 190 | 5.545658 | TCCATTTCTGCAACGAGTAATTC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
190 | 191 | 5.415701 | ACATCCATTTCTGCAACGAGTAATT | 59.584 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
191 | 192 | 4.943705 | ACATCCATTTCTGCAACGAGTAAT | 59.056 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
192 | 193 | 4.323417 | ACATCCATTTCTGCAACGAGTAA | 58.677 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
193 | 194 | 3.937814 | ACATCCATTTCTGCAACGAGTA | 58.062 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
194 | 195 | 2.783135 | ACATCCATTTCTGCAACGAGT | 58.217 | 42.857 | 0.00 | 0.00 | 0.00 | 4.18 |
195 | 196 | 4.813161 | AGATACATCCATTTCTGCAACGAG | 59.187 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
196 | 197 | 4.769688 | AGATACATCCATTTCTGCAACGA | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 3.85 |
197 | 198 | 5.985530 | TCTAGATACATCCATTTCTGCAACG | 59.014 | 40.000 | 0.00 | 0.00 | 0.00 | 4.10 |
198 | 199 | 7.443575 | ACATCTAGATACATCCATTTCTGCAAC | 59.556 | 37.037 | 4.54 | 0.00 | 0.00 | 4.17 |
199 | 200 | 7.512130 | ACATCTAGATACATCCATTTCTGCAA | 58.488 | 34.615 | 4.54 | 0.00 | 0.00 | 4.08 |
200 | 201 | 7.071069 | ACATCTAGATACATCCATTTCTGCA | 57.929 | 36.000 | 4.54 | 0.00 | 0.00 | 4.41 |
201 | 202 | 9.664332 | AATACATCTAGATACATCCATTTCTGC | 57.336 | 33.333 | 4.54 | 0.00 | 0.00 | 4.26 |
230 | 231 | 9.606631 | GTCTCAGAAATGGATGTATTTAGAACT | 57.393 | 33.333 | 0.00 | 0.00 | 30.78 | 3.01 |
231 | 232 | 8.543774 | CGTCTCAGAAATGGATGTATTTAGAAC | 58.456 | 37.037 | 0.00 | 0.00 | 30.78 | 3.01 |
232 | 233 | 8.474831 | TCGTCTCAGAAATGGATGTATTTAGAA | 58.525 | 33.333 | 0.00 | 0.00 | 30.78 | 2.10 |
233 | 234 | 8.007405 | TCGTCTCAGAAATGGATGTATTTAGA | 57.993 | 34.615 | 0.00 | 0.00 | 30.78 | 2.10 |
234 | 235 | 7.923344 | ACTCGTCTCAGAAATGGATGTATTTAG | 59.077 | 37.037 | 0.00 | 0.00 | 30.78 | 1.85 |
235 | 236 | 7.782049 | ACTCGTCTCAGAAATGGATGTATTTA | 58.218 | 34.615 | 0.00 | 0.00 | 30.78 | 1.40 |
236 | 237 | 6.644347 | ACTCGTCTCAGAAATGGATGTATTT | 58.356 | 36.000 | 0.00 | 0.00 | 33.19 | 1.40 |
237 | 238 | 6.227298 | ACTCGTCTCAGAAATGGATGTATT | 57.773 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
238 | 239 | 5.860941 | ACTCGTCTCAGAAATGGATGTAT | 57.139 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
239 | 240 | 6.769134 | TTACTCGTCTCAGAAATGGATGTA | 57.231 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
240 | 241 | 5.661056 | TTACTCGTCTCAGAAATGGATGT | 57.339 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
241 | 242 | 7.404985 | CAAATTACTCGTCTCAGAAATGGATG | 58.595 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
242 | 243 | 6.540189 | CCAAATTACTCGTCTCAGAAATGGAT | 59.460 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
243 | 244 | 5.874810 | CCAAATTACTCGTCTCAGAAATGGA | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
244 | 245 | 5.874810 | TCCAAATTACTCGTCTCAGAAATGG | 59.125 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
245 | 246 | 6.968131 | TCCAAATTACTCGTCTCAGAAATG | 57.032 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
246 | 247 | 6.090898 | CGTTCCAAATTACTCGTCTCAGAAAT | 59.909 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
247 | 248 | 5.404366 | CGTTCCAAATTACTCGTCTCAGAAA | 59.596 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
248 | 249 | 4.921515 | CGTTCCAAATTACTCGTCTCAGAA | 59.078 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
249 | 250 | 4.482386 | CGTTCCAAATTACTCGTCTCAGA | 58.518 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
250 | 251 | 3.612860 | CCGTTCCAAATTACTCGTCTCAG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
251 | 252 | 3.256383 | TCCGTTCCAAATTACTCGTCTCA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
252 | 253 | 3.841643 | TCCGTTCCAAATTACTCGTCTC | 58.158 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
253 | 254 | 3.368116 | CCTCCGTTCCAAATTACTCGTCT | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
254 | 255 | 2.928116 | CCTCCGTTCCAAATTACTCGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
255 | 256 | 2.564062 | TCCTCCGTTCCAAATTACTCGT | 59.436 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
256 | 257 | 3.241067 | TCCTCCGTTCCAAATTACTCG | 57.759 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
257 | 258 | 4.576879 | ACTTCCTCCGTTCCAAATTACTC | 58.423 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
258 | 259 | 4.635699 | ACTTCCTCCGTTCCAAATTACT | 57.364 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
259 | 260 | 5.727434 | TCTACTTCCTCCGTTCCAAATTAC | 58.273 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
260 | 261 | 6.555463 | ATCTACTTCCTCCGTTCCAAATTA | 57.445 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
261 | 262 | 4.903045 | TCTACTTCCTCCGTTCCAAATT | 57.097 | 40.909 | 0.00 | 0.00 | 0.00 | 1.82 |
262 | 263 | 6.326583 | TCATATCTACTTCCTCCGTTCCAAAT | 59.673 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
263 | 264 | 5.659525 | TCATATCTACTTCCTCCGTTCCAAA | 59.340 | 40.000 | 0.00 | 0.00 | 0.00 | 3.28 |
264 | 265 | 5.205821 | TCATATCTACTTCCTCCGTTCCAA | 58.794 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
265 | 266 | 4.800023 | TCATATCTACTTCCTCCGTTCCA | 58.200 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
266 | 267 | 5.068723 | TGTTCATATCTACTTCCTCCGTTCC | 59.931 | 44.000 | 0.00 | 0.00 | 0.00 | 3.62 |
267 | 268 | 6.039493 | TCTGTTCATATCTACTTCCTCCGTTC | 59.961 | 42.308 | 0.00 | 0.00 | 0.00 | 3.95 |
268 | 269 | 5.892119 | TCTGTTCATATCTACTTCCTCCGTT | 59.108 | 40.000 | 0.00 | 0.00 | 0.00 | 4.44 |
269 | 270 | 5.299782 | GTCTGTTCATATCTACTTCCTCCGT | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 4.69 |
270 | 271 | 5.299531 | TGTCTGTTCATATCTACTTCCTCCG | 59.700 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
271 | 272 | 6.716934 | TGTCTGTTCATATCTACTTCCTCC | 57.283 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
310 | 360 | 7.236847 | TCCCTTCGTCCCATAATATAAGATGTT | 59.763 | 37.037 | 0.00 | 0.00 | 0.00 | 2.71 |
331 | 506 | 3.559384 | GCTTGGCTACAAACTACTCCCTT | 60.559 | 47.826 | 0.00 | 0.00 | 35.89 | 3.95 |
488 | 663 | 8.943002 | GGTACTAACAAACTTGCATTACATAGT | 58.057 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
526 | 706 | 5.362430 | GGTTTAATATTGGACAGAATGGGCA | 59.638 | 40.000 | 0.00 | 0.00 | 43.62 | 5.36 |
574 | 754 | 3.230976 | GTCTTGGAAGTGGTTTGGGAAT | 58.769 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
579 | 759 | 3.815401 | CTGTAGGTCTTGGAAGTGGTTTG | 59.185 | 47.826 | 0.00 | 0.00 | 0.00 | 2.93 |
580 | 760 | 3.181443 | CCTGTAGGTCTTGGAAGTGGTTT | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.27 |
581 | 761 | 2.372172 | CCTGTAGGTCTTGGAAGTGGTT | 59.628 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
582 | 762 | 1.978580 | CCTGTAGGTCTTGGAAGTGGT | 59.021 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
583 | 763 | 1.339151 | GCCTGTAGGTCTTGGAAGTGG | 60.339 | 57.143 | 0.00 | 0.00 | 37.57 | 4.00 |
584 | 764 | 1.625818 | AGCCTGTAGGTCTTGGAAGTG | 59.374 | 52.381 | 0.00 | 0.00 | 37.57 | 3.16 |
585 | 765 | 2.031495 | AGCCTGTAGGTCTTGGAAGT | 57.969 | 50.000 | 0.00 | 0.00 | 37.57 | 3.01 |
586 | 766 | 3.425162 | AAAGCCTGTAGGTCTTGGAAG | 57.575 | 47.619 | 0.00 | 0.00 | 37.57 | 3.46 |
587 | 767 | 3.486383 | CAAAAGCCTGTAGGTCTTGGAA | 58.514 | 45.455 | 0.00 | 0.00 | 37.57 | 3.53 |
588 | 768 | 2.224769 | CCAAAAGCCTGTAGGTCTTGGA | 60.225 | 50.000 | 16.40 | 0.00 | 40.03 | 3.53 |
589 | 769 | 2.162681 | CCAAAAGCCTGTAGGTCTTGG | 58.837 | 52.381 | 11.04 | 11.04 | 35.53 | 3.61 |
590 | 770 | 1.541588 | GCCAAAAGCCTGTAGGTCTTG | 59.458 | 52.381 | 0.00 | 1.71 | 37.57 | 3.02 |
591 | 771 | 1.425448 | AGCCAAAAGCCTGTAGGTCTT | 59.575 | 47.619 | 0.00 | 1.37 | 45.47 | 3.01 |
592 | 772 | 1.068121 | AGCCAAAAGCCTGTAGGTCT | 58.932 | 50.000 | 0.00 | 0.00 | 45.47 | 3.85 |
593 | 773 | 2.781681 | TAGCCAAAAGCCTGTAGGTC | 57.218 | 50.000 | 0.00 | 0.00 | 45.47 | 3.85 |
594 | 774 | 3.356290 | CAATAGCCAAAAGCCTGTAGGT | 58.644 | 45.455 | 0.00 | 0.00 | 45.47 | 3.08 |
595 | 775 | 2.099756 | GCAATAGCCAAAAGCCTGTAGG | 59.900 | 50.000 | 0.00 | 0.00 | 45.47 | 3.18 |
596 | 776 | 3.427161 | GCAATAGCCAAAAGCCTGTAG | 57.573 | 47.619 | 0.00 | 0.00 | 45.47 | 2.74 |
609 | 789 | 6.865205 | CCATTAAGATTAGCTTTGGCAATAGC | 59.135 | 38.462 | 19.83 | 19.83 | 41.70 | 2.97 |
610 | 790 | 7.373493 | CCCATTAAGATTAGCTTTGGCAATAG | 58.627 | 38.462 | 0.00 | 2.93 | 41.70 | 1.73 |
611 | 791 | 6.267471 | CCCCATTAAGATTAGCTTTGGCAATA | 59.733 | 38.462 | 0.00 | 0.00 | 41.70 | 1.90 |
612 | 792 | 5.070847 | CCCCATTAAGATTAGCTTTGGCAAT | 59.929 | 40.000 | 0.00 | 0.00 | 41.70 | 3.56 |
613 | 793 | 4.405358 | CCCCATTAAGATTAGCTTTGGCAA | 59.595 | 41.667 | 0.00 | 0.00 | 41.70 | 4.52 |
614 | 794 | 3.960102 | CCCCATTAAGATTAGCTTTGGCA | 59.040 | 43.478 | 0.00 | 0.00 | 41.70 | 4.92 |
615 | 795 | 3.321968 | CCCCCATTAAGATTAGCTTTGGC | 59.678 | 47.826 | 0.00 | 0.00 | 34.49 | 4.52 |
634 | 814 | 5.827326 | AATAACTCTCTATTACTGCCCCC | 57.173 | 43.478 | 0.00 | 0.00 | 0.00 | 5.40 |
635 | 815 | 8.208903 | TGTAAAATAACTCTCTATTACTGCCCC | 58.791 | 37.037 | 0.00 | 0.00 | 0.00 | 5.80 |
636 | 816 | 9.043079 | GTGTAAAATAACTCTCTATTACTGCCC | 57.957 | 37.037 | 0.00 | 0.00 | 0.00 | 5.36 |
637 | 817 | 9.819267 | AGTGTAAAATAACTCTCTATTACTGCC | 57.181 | 33.333 | 0.00 | 0.00 | 0.00 | 4.85 |
675 | 1167 | 2.092968 | AGGTGTGTGCATACGGAATGAT | 60.093 | 45.455 | 9.18 | 0.00 | 37.86 | 2.45 |
710 | 1202 | 5.476599 | ACTTGTTGCAATAGTTAATCAGGCA | 59.523 | 36.000 | 0.59 | 0.00 | 0.00 | 4.75 |
714 | 1206 | 7.935520 | TGTTGACTTGTTGCAATAGTTAATCA | 58.064 | 30.769 | 18.27 | 15.57 | 0.00 | 2.57 |
715 | 1207 | 8.970691 | ATGTTGACTTGTTGCAATAGTTAATC | 57.029 | 30.769 | 18.27 | 14.08 | 0.00 | 1.75 |
751 | 1243 | 1.872952 | GTTTTGCACCATTTGGAAGGC | 59.127 | 47.619 | 3.01 | 4.84 | 36.80 | 4.35 |
769 | 1261 | 7.655521 | TTGTACTGCTAGATGTATGTAGGTT | 57.344 | 36.000 | 0.00 | 0.00 | 0.00 | 3.50 |
799 | 1291 | 5.750067 | ACAAAAATAAGTTTGCTGCTGTCAG | 59.250 | 36.000 | 0.00 | 0.00 | 41.33 | 3.51 |
873 | 1365 | 3.935203 | GTGTGTGAGAGAGAGAGAGAGAG | 59.065 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
874 | 1366 | 3.326297 | TGTGTGTGAGAGAGAGAGAGAGA | 59.674 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
875 | 1367 | 3.436704 | GTGTGTGTGAGAGAGAGAGAGAG | 59.563 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
876 | 1368 | 3.181450 | TGTGTGTGTGAGAGAGAGAGAGA | 60.181 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
877 | 1369 | 3.058293 | GTGTGTGTGTGAGAGAGAGAGAG | 60.058 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
891 | 1385 | 1.728825 | GCTTGTGTGTGTGTGTGTGTG | 60.729 | 52.381 | 0.00 | 0.00 | 0.00 | 3.82 |
892 | 1386 | 0.521291 | GCTTGTGTGTGTGTGTGTGT | 59.479 | 50.000 | 0.00 | 0.00 | 0.00 | 3.72 |
893 | 1387 | 0.804364 | AGCTTGTGTGTGTGTGTGTG | 59.196 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
894 | 1388 | 2.394930 | TAGCTTGTGTGTGTGTGTGT | 57.605 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
895 | 1389 | 2.539547 | GCTTAGCTTGTGTGTGTGTGTG | 60.540 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
896 | 1390 | 1.670811 | GCTTAGCTTGTGTGTGTGTGT | 59.329 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
897 | 1391 | 1.333169 | CGCTTAGCTTGTGTGTGTGTG | 60.333 | 52.381 | 1.76 | 0.00 | 0.00 | 3.82 |
898 | 1392 | 0.937304 | CGCTTAGCTTGTGTGTGTGT | 59.063 | 50.000 | 1.76 | 0.00 | 0.00 | 3.72 |
899 | 1393 | 0.235665 | CCGCTTAGCTTGTGTGTGTG | 59.764 | 55.000 | 1.76 | 0.00 | 0.00 | 3.82 |
900 | 1394 | 1.507141 | GCCGCTTAGCTTGTGTGTGT | 61.507 | 55.000 | 1.76 | 0.00 | 0.00 | 3.72 |
901 | 1395 | 1.207593 | GCCGCTTAGCTTGTGTGTG | 59.792 | 57.895 | 1.76 | 0.00 | 0.00 | 3.82 |
902 | 1396 | 1.227823 | TGCCGCTTAGCTTGTGTGT | 60.228 | 52.632 | 1.76 | 0.00 | 0.00 | 3.72 |
903 | 1397 | 0.950555 | TCTGCCGCTTAGCTTGTGTG | 60.951 | 55.000 | 1.76 | 0.00 | 0.00 | 3.82 |
904 | 1398 | 0.671781 | CTCTGCCGCTTAGCTTGTGT | 60.672 | 55.000 | 1.76 | 0.00 | 0.00 | 3.72 |
905 | 1399 | 0.390340 | TCTCTGCCGCTTAGCTTGTG | 60.390 | 55.000 | 1.76 | 0.00 | 0.00 | 3.33 |
906 | 1400 | 0.390472 | GTCTCTGCCGCTTAGCTTGT | 60.390 | 55.000 | 1.76 | 0.00 | 0.00 | 3.16 |
907 | 1401 | 0.390340 | TGTCTCTGCCGCTTAGCTTG | 60.390 | 55.000 | 1.76 | 0.00 | 0.00 | 4.01 |
915 | 1409 | 2.607892 | GGTTGTGTGTCTCTGCCGC | 61.608 | 63.158 | 0.00 | 0.00 | 0.00 | 6.53 |
923 | 1417 | 4.323553 | AGTGTCTTCTAGGTTGTGTGTC | 57.676 | 45.455 | 0.00 | 0.00 | 0.00 | 3.67 |
1071 | 1565 | 9.617975 | GTGCATGAATTTAGCTATTCCTAAATC | 57.382 | 33.333 | 0.00 | 0.00 | 43.56 | 2.17 |
1098 | 1592 | 5.761205 | AGCAGAGGATTCTAACTAGAGACA | 58.239 | 41.667 | 0.00 | 0.00 | 33.21 | 3.41 |
1152 | 1646 | 4.487948 | CAACTAATTCCATTGCCACACAG | 58.512 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
1239 | 1735 | 1.030488 | CCTCATGGTCTTGCTGCCAG | 61.030 | 60.000 | 0.00 | 0.00 | 38.27 | 4.85 |
1350 | 1846 | 2.052690 | CGGTGTCGATCCTGGTCCT | 61.053 | 63.158 | 7.75 | 0.00 | 39.00 | 3.85 |
1398 | 1894 | 2.202932 | CGCCGGAGCAGCTTACAT | 60.203 | 61.111 | 5.05 | 0.00 | 39.83 | 2.29 |
1446 | 1942 | 0.031449 | GCTCTAGCGGCGAGAAGAAT | 59.969 | 55.000 | 12.98 | 0.00 | 0.00 | 2.40 |
1503 | 1999 | 0.723981 | GCATCTTGGAGACGTTGCTC | 59.276 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1541 | 2037 | 5.105063 | GCAAGCAATGGAAGGAAATTAGAC | 58.895 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
1545 | 2041 | 3.836562 | AGAGCAAGCAATGGAAGGAAATT | 59.163 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
1552 | 2048 | 3.225104 | AGTCAAAGAGCAAGCAATGGAA | 58.775 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
1576 | 2074 | 7.177568 | CAGAAGGGATAGAAGTAAGCTATGCTA | 59.822 | 40.741 | 0.00 | 0.00 | 38.25 | 3.49 |
1697 | 2195 | 5.982890 | AAGGTTTCCAGAAATACCATGTG | 57.017 | 39.130 | 4.51 | 0.00 | 32.36 | 3.21 |
1721 | 2219 | 8.871686 | ACCACAAATGAAATTCTCTTGTTAAC | 57.128 | 30.769 | 9.47 | 0.00 | 33.67 | 2.01 |
1748 | 2246 | 2.121291 | TGACTTGTGAGTTGTGGCAA | 57.879 | 45.000 | 0.00 | 0.00 | 35.88 | 4.52 |
1751 | 2249 | 1.334869 | GCCTTGACTTGTGAGTTGTGG | 59.665 | 52.381 | 0.00 | 0.00 | 35.88 | 4.17 |
1806 | 2304 | 1.062505 | AGAGAGGAGATCCAGGGGAAC | 60.063 | 57.143 | 0.92 | 0.00 | 38.89 | 3.62 |
1827 | 2325 | 3.256136 | ACGCCCGAAACATAATGGAAAAA | 59.744 | 39.130 | 0.00 | 0.00 | 0.00 | 1.94 |
1843 | 2341 | 3.644884 | AATCTCTAGTGATTACGCCCG | 57.355 | 47.619 | 16.48 | 0.00 | 35.18 | 6.13 |
1848 | 2346 | 9.601217 | AACCATACACAAATCTCTAGTGATTAC | 57.399 | 33.333 | 17.91 | 0.00 | 35.82 | 1.89 |
1871 | 2376 | 1.408422 | GCACAAATGCGACTCAAACC | 58.592 | 50.000 | 0.00 | 0.00 | 43.33 | 3.27 |
1883 | 2389 | 4.320608 | ACGGAACAAAAGATGCACAAAT | 57.679 | 36.364 | 0.00 | 0.00 | 0.00 | 2.32 |
1884 | 2390 | 3.791973 | ACGGAACAAAAGATGCACAAA | 57.208 | 38.095 | 0.00 | 0.00 | 0.00 | 2.83 |
1885 | 2391 | 4.902443 | TTACGGAACAAAAGATGCACAA | 57.098 | 36.364 | 0.00 | 0.00 | 0.00 | 3.33 |
1897 | 2403 | 7.708998 | AGAACTTTTAGCATTTTTACGGAACA | 58.291 | 30.769 | 0.00 | 0.00 | 0.00 | 3.18 |
1901 | 2407 | 7.807680 | AGAGAGAACTTTTAGCATTTTTACGG | 58.192 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
1942 | 2452 | 5.913137 | TGGGAGGCAAACATTTTATACAG | 57.087 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
1947 | 2457 | 5.072329 | TGGATTTTGGGAGGCAAACATTTTA | 59.928 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1948 | 2458 | 4.141298 | TGGATTTTGGGAGGCAAACATTTT | 60.141 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
1949 | 2459 | 3.393941 | TGGATTTTGGGAGGCAAACATTT | 59.606 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
1950 | 2460 | 2.978278 | TGGATTTTGGGAGGCAAACATT | 59.022 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
1981 | 2491 | 7.402650 | TGATAATGGGGAAACTTCAATTTGGAT | 59.597 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
1982 | 2492 | 6.728164 | TGATAATGGGGAAACTTCAATTTGGA | 59.272 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
1983 | 2493 | 6.945218 | TGATAATGGGGAAACTTCAATTTGG | 58.055 | 36.000 | 0.00 | 0.00 | 0.00 | 3.28 |
1984 | 2494 | 8.480501 | AGATGATAATGGGGAAACTTCAATTTG | 58.519 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1985 | 2495 | 8.613922 | AGATGATAATGGGGAAACTTCAATTT | 57.386 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
1986 | 2496 | 7.840716 | TGAGATGATAATGGGGAAACTTCAATT | 59.159 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1987 | 2497 | 7.356680 | TGAGATGATAATGGGGAAACTTCAAT | 58.643 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
1988 | 2498 | 6.730447 | TGAGATGATAATGGGGAAACTTCAA | 58.270 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
1989 | 2499 | 6.325993 | TGAGATGATAATGGGGAAACTTCA | 57.674 | 37.500 | 0.00 | 0.00 | 0.00 | 3.02 |
1995 | 2505 | 5.974156 | TGTCTTGAGATGATAATGGGGAA | 57.026 | 39.130 | 0.00 | 0.00 | 0.00 | 3.97 |
2004 | 2514 | 8.366401 | CCTGATGTATACTTGTCTTGAGATGAT | 58.634 | 37.037 | 4.17 | 0.00 | 0.00 | 2.45 |
2005 | 2515 | 7.201947 | CCCTGATGTATACTTGTCTTGAGATGA | 60.202 | 40.741 | 4.17 | 0.00 | 0.00 | 2.92 |
2006 | 2516 | 6.927936 | CCCTGATGTATACTTGTCTTGAGATG | 59.072 | 42.308 | 4.17 | 0.00 | 0.00 | 2.90 |
2008 | 2518 | 5.163405 | GCCCTGATGTATACTTGTCTTGAGA | 60.163 | 44.000 | 4.17 | 0.00 | 0.00 | 3.27 |
2009 | 2519 | 5.053145 | GCCCTGATGTATACTTGTCTTGAG | 58.947 | 45.833 | 4.17 | 0.00 | 0.00 | 3.02 |
2011 | 2521 | 4.769688 | TGCCCTGATGTATACTTGTCTTG | 58.230 | 43.478 | 4.17 | 0.00 | 0.00 | 3.02 |
2012 | 2522 | 5.636903 | ATGCCCTGATGTATACTTGTCTT | 57.363 | 39.130 | 4.17 | 0.00 | 0.00 | 3.01 |
2013 | 2523 | 5.636903 | AATGCCCTGATGTATACTTGTCT | 57.363 | 39.130 | 4.17 | 0.00 | 0.00 | 3.41 |
2014 | 2524 | 6.058183 | AGAAATGCCCTGATGTATACTTGTC | 58.942 | 40.000 | 4.17 | 1.03 | 0.00 | 3.18 |
2015 | 2525 | 6.006275 | AGAAATGCCCTGATGTATACTTGT | 57.994 | 37.500 | 4.17 | 0.00 | 0.00 | 3.16 |
2016 | 2526 | 6.294473 | AGAGAAATGCCCTGATGTATACTTG | 58.706 | 40.000 | 4.17 | 0.00 | 0.00 | 3.16 |
2019 | 2529 | 7.573968 | AAAAGAGAAATGCCCTGATGTATAC | 57.426 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2020 | 2530 | 8.494433 | AGTAAAAGAGAAATGCCCTGATGTATA | 58.506 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
2021 | 2531 | 7.349598 | AGTAAAAGAGAAATGCCCTGATGTAT | 58.650 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
2023 | 2533 | 5.574188 | AGTAAAAGAGAAATGCCCTGATGT | 58.426 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
2024 | 2534 | 6.521151 | AAGTAAAAGAGAAATGCCCTGATG | 57.479 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
2026 | 2536 | 6.976934 | AAAAGTAAAAGAGAAATGCCCTGA | 57.023 | 33.333 | 0.00 | 0.00 | 0.00 | 3.86 |
2050 | 2578 | 7.726216 | TGAAGTCACACATCTCTCTCTTAAAA | 58.274 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
2056 | 2584 | 5.321959 | TGATGAAGTCACACATCTCTCTC | 57.678 | 43.478 | 13.54 | 0.00 | 42.05 | 3.20 |
2066 | 2594 | 5.474189 | TGAGCAAAATGATGATGAAGTCACA | 59.526 | 36.000 | 0.00 | 0.00 | 40.28 | 3.58 |
2080 | 2608 | 7.011669 | ACTTGTTGAAGGATTTTGAGCAAAATG | 59.988 | 33.333 | 21.85 | 8.96 | 40.12 | 2.32 |
2081 | 2609 | 7.049754 | ACTTGTTGAAGGATTTTGAGCAAAAT | 58.950 | 30.769 | 18.16 | 18.16 | 41.23 | 1.82 |
2082 | 2610 | 6.405538 | ACTTGTTGAAGGATTTTGAGCAAAA | 58.594 | 32.000 | 10.43 | 10.43 | 37.80 | 2.44 |
2083 | 2611 | 5.976458 | ACTTGTTGAAGGATTTTGAGCAAA | 58.024 | 33.333 | 0.00 | 0.00 | 32.95 | 3.68 |
2084 | 2612 | 5.596836 | ACTTGTTGAAGGATTTTGAGCAA | 57.403 | 34.783 | 0.00 | 0.00 | 32.95 | 3.91 |
2086 | 2614 | 5.591099 | TCAACTTGTTGAAGGATTTTGAGC | 58.409 | 37.500 | 13.05 | 0.00 | 32.95 | 4.26 |
2087 | 2615 | 6.476706 | GGTTCAACTTGTTGAAGGATTTTGAG | 59.523 | 38.462 | 23.88 | 0.00 | 41.12 | 3.02 |
2088 | 2616 | 6.337356 | GGTTCAACTTGTTGAAGGATTTTGA | 58.663 | 36.000 | 23.88 | 0.42 | 41.12 | 2.69 |
2089 | 2617 | 5.231991 | CGGTTCAACTTGTTGAAGGATTTTG | 59.768 | 40.000 | 23.88 | 9.28 | 41.12 | 2.44 |
2090 | 2618 | 5.126384 | TCGGTTCAACTTGTTGAAGGATTTT | 59.874 | 36.000 | 23.88 | 0.00 | 41.12 | 1.82 |
2091 | 2619 | 4.642885 | TCGGTTCAACTTGTTGAAGGATTT | 59.357 | 37.500 | 23.88 | 0.00 | 41.12 | 2.17 |
2092 | 2620 | 4.204012 | TCGGTTCAACTTGTTGAAGGATT | 58.796 | 39.130 | 23.88 | 0.00 | 41.12 | 3.01 |
2093 | 2621 | 3.815809 | TCGGTTCAACTTGTTGAAGGAT | 58.184 | 40.909 | 23.88 | 0.00 | 41.12 | 3.24 |
2097 | 2625 | 3.459145 | TCGATCGGTTCAACTTGTTGAA | 58.541 | 40.909 | 20.75 | 20.75 | 38.49 | 2.69 |
2098 | 2626 | 3.100658 | TCGATCGGTTCAACTTGTTGA | 57.899 | 42.857 | 16.41 | 11.62 | 0.00 | 3.18 |
2099 | 2627 | 3.247648 | ACTTCGATCGGTTCAACTTGTTG | 59.752 | 43.478 | 16.41 | 7.13 | 0.00 | 3.33 |
2100 | 2628 | 3.247648 | CACTTCGATCGGTTCAACTTGTT | 59.752 | 43.478 | 16.41 | 0.00 | 0.00 | 2.83 |
2129 | 2697 | 7.249147 | AGGTACGCGTTAGCTAATAATATCAG | 58.751 | 38.462 | 20.78 | 0.00 | 42.32 | 2.90 |
2130 | 2698 | 7.149569 | AGGTACGCGTTAGCTAATAATATCA | 57.850 | 36.000 | 20.78 | 0.00 | 42.32 | 2.15 |
2131 | 2699 | 7.752239 | TCAAGGTACGCGTTAGCTAATAATATC | 59.248 | 37.037 | 20.78 | 0.00 | 37.56 | 1.63 |
2135 | 2712 | 5.036737 | GTCAAGGTACGCGTTAGCTAATAA | 58.963 | 41.667 | 20.78 | 0.00 | 37.56 | 1.40 |
2138 | 2715 | 2.728846 | CGTCAAGGTACGCGTTAGCTAA | 60.729 | 50.000 | 20.78 | 0.86 | 37.56 | 3.09 |
2141 | 2718 | 1.986154 | CGTCAAGGTACGCGTTAGC | 59.014 | 57.895 | 20.78 | 13.26 | 35.87 | 3.09 |
2152 | 2729 | 2.277692 | CATGCATGCGCGTCAAGG | 60.278 | 61.111 | 14.93 | 4.73 | 42.97 | 3.61 |
2329 | 2906 | 2.419297 | GGTACCTGTGCTTGAGGATCTG | 60.419 | 54.545 | 4.06 | 0.00 | 34.92 | 2.90 |
2570 | 3147 | 1.187087 | ACAACGGCCTCAACCAAAAA | 58.813 | 45.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2640 | 3217 | 3.942748 | ACGTGTAGAGAAAAAGGCAAACA | 59.057 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
2729 | 3306 | 0.254178 | GCTTGAATGAGCTCCCCTGA | 59.746 | 55.000 | 12.15 | 0.00 | 39.57 | 3.86 |
2797 | 3574 | 4.729868 | AGACTTGGACACCTTAGCAAATT | 58.270 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
2812 | 3589 | 3.910314 | GGCTTGTGTTCCCAAGACTTGG | 61.910 | 54.545 | 25.05 | 25.05 | 45.31 | 3.61 |
2821 | 3598 | 1.378646 | GGCTAGGGCTTGTGTTCCC | 60.379 | 63.158 | 0.00 | 0.00 | 42.94 | 3.97 |
2823 | 3600 | 0.741221 | CTCGGCTAGGGCTTGTGTTC | 60.741 | 60.000 | 0.00 | 0.00 | 38.73 | 3.18 |
2836 | 3613 | 0.247736 | CTAGCTTGTTGGACTCGGCT | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
2839 | 3616 | 1.687494 | GCGCTAGCTTGTTGGACTCG | 61.687 | 60.000 | 13.93 | 0.00 | 41.01 | 4.18 |
2858 | 3635 | 5.355630 | CTCATATGGAGTAGGGAGTATCACG | 59.644 | 48.000 | 2.13 | 0.00 | 40.77 | 4.35 |
2859 | 3636 | 5.654650 | CCTCATATGGAGTAGGGAGTATCAC | 59.345 | 48.000 | 2.13 | 0.00 | 42.40 | 3.06 |
2933 | 3728 | 1.554160 | CAAGCATGTGAGGAGAGGAGT | 59.446 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2937 | 3732 | 2.028294 | ACAGACAAGCATGTGAGGAGAG | 60.028 | 50.000 | 0.00 | 0.00 | 40.74 | 3.20 |
2983 | 3778 | 7.649705 | ACGTATGCTACATAAATGAGAAGAGTG | 59.350 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
3018 | 3813 | 8.359642 | TGGAAAGGTTTGTTAAAGAATCATCTG | 58.640 | 33.333 | 0.00 | 0.00 | 35.59 | 2.90 |
3088 | 3900 | 0.596600 | TCGCCACTGACGTTGTTCTC | 60.597 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3106 | 3918 | 6.422776 | AGACAAACGGTTCACATGATATTC | 57.577 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
3146 | 3958 | 1.081094 | GCCTTGCCATTTGAATGTGC | 58.919 | 50.000 | 3.30 | 6.60 | 34.60 | 4.57 |
3153 | 3965 | 3.127548 | CAGTAGTACTGCCTTGCCATTTG | 59.872 | 47.826 | 17.11 | 0.00 | 39.62 | 2.32 |
3212 | 4024 | 6.591935 | AGTCAAAATCTTGTACTGAGGACAA | 58.408 | 36.000 | 10.28 | 10.28 | 35.55 | 3.18 |
3223 | 4035 | 7.944729 | ATGGCATTACTAGTCAAAATCTTGT | 57.055 | 32.000 | 0.00 | 0.00 | 33.94 | 3.16 |
3286 | 4098 | 3.555586 | GCCATGGTTTTGTTTGCTGAGAT | 60.556 | 43.478 | 14.67 | 0.00 | 0.00 | 2.75 |
3318 | 4130 | 5.841810 | TGAAAACGATTGCTGGATTCTTTT | 58.158 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
3322 | 4134 | 8.012241 | GTCTATATGAAAACGATTGCTGGATTC | 58.988 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
3328 | 4140 | 6.597672 | TGGTTGTCTATATGAAAACGATTGCT | 59.402 | 34.615 | 0.00 | 0.00 | 42.42 | 3.91 |
3361 | 4173 | 8.258007 | TCAAATCTTGACCAGTGGTATAGTTAG | 58.742 | 37.037 | 16.72 | 6.63 | 35.25 | 2.34 |
3465 | 4277 | 5.206299 | CGATAGTTCTCAGATGGTACGAAC | 58.794 | 45.833 | 0.00 | 0.00 | 35.44 | 3.95 |
3468 | 4280 | 3.564644 | ACCGATAGTTCTCAGATGGTACG | 59.435 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
3473 | 4285 | 5.703592 | AGCTAGTACCGATAGTTCTCAGATG | 59.296 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3476 | 4288 | 4.817464 | ACAGCTAGTACCGATAGTTCTCAG | 59.183 | 45.833 | 0.00 | 0.00 | 0.00 | 3.35 |
3490 | 4302 | 5.706916 | GTGTACTGCACTTAACAGCTAGTA | 58.293 | 41.667 | 0.00 | 0.00 | 44.41 | 1.82 |
3491 | 4303 | 4.557205 | GTGTACTGCACTTAACAGCTAGT | 58.443 | 43.478 | 0.00 | 0.00 | 44.41 | 2.57 |
3520 | 4334 | 3.192001 | GCCTGCAGATTTTCAGATGTGAA | 59.808 | 43.478 | 17.39 | 0.23 | 41.13 | 3.18 |
3521 | 4335 | 2.751259 | GCCTGCAGATTTTCAGATGTGA | 59.249 | 45.455 | 17.39 | 0.00 | 32.26 | 3.58 |
3525 | 4339 | 2.119801 | ACGCCTGCAGATTTTCAGAT | 57.880 | 45.000 | 17.39 | 0.00 | 32.26 | 2.90 |
3548 | 4362 | 0.112412 | AGGGCCGCTAATTATTGGGG | 59.888 | 55.000 | 0.00 | 4.05 | 39.01 | 4.96 |
3561 | 4375 | 1.592669 | CTCACTAATGCGAGGGCCG | 60.593 | 63.158 | 0.00 | 0.00 | 38.85 | 6.13 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.