Multiple sequence alignment - TraesCS1A01G111300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G111300 chr1A 100.000 7245 0 0 1 7245 112042437 112035193 0.000000e+00 13380
1 TraesCS1A01G111300 chr1A 89.423 104 11 0 7139 7242 585992947 585992844 1.640000e-26 132
2 TraesCS1A01G111300 chr1B 93.253 7114 293 70 1 7066 164715457 164708483 0.000000e+00 10305
3 TraesCS1A01G111300 chr1B 91.566 83 7 0 5528 5610 164710119 164710037 1.650000e-21 115
4 TraesCS1A01G111300 chr1D 95.605 3709 135 12 1 3701 108836653 108832965 0.000000e+00 5921
5 TraesCS1A01G111300 chr1D 96.377 1794 53 5 3699 5485 108832912 108831124 0.000000e+00 2942
6 TraesCS1A01G111300 chr1D 92.699 1534 77 19 5547 7062 108830757 108829241 0.000000e+00 2180
7 TraesCS1A01G111300 chr1D 80.663 362 66 4 2744 3103 108833863 108833504 1.990000e-70 278
8 TraesCS1A01G111300 chr1D 100.000 72 0 0 5477 5548 108831152 108831081 4.560000e-27 134
9 TraesCS1A01G111300 chr1D 93.976 83 5 0 5528 5610 108831207 108831125 7.630000e-25 126
10 TraesCS1A01G111300 chr7D 90.566 106 9 1 7138 7242 159663451 159663556 9.800000e-29 139
11 TraesCS1A01G111300 chr7A 90.385 104 10 0 7139 7242 125480601 125480704 3.530000e-28 137
12 TraesCS1A01G111300 chr7A 89.720 107 10 1 7136 7242 730561057 730560952 1.270000e-27 135
13 TraesCS1A01G111300 chr6D 90.476 105 9 1 7138 7242 430022280 430022383 3.530000e-28 137
14 TraesCS1A01G111300 chr3A 90.385 104 10 0 7138 7241 505721264 505721367 3.530000e-28 137
15 TraesCS1A01G111300 chr3A 89.423 104 11 0 7139 7242 584763441 584763338 1.640000e-26 132
16 TraesCS1A01G111300 chr3A 72.255 501 112 21 4051 4540 63907793 63908277 5.900000e-26 130
17 TraesCS1A01G111300 chr7B 90.196 102 9 1 7141 7242 320259080 320259180 1.640000e-26 132
18 TraesCS1A01G111300 chr3D 72.323 495 112 20 4051 4535 51041377 51041856 1.640000e-26 132
19 TraesCS1A01G111300 chr5D 89.216 102 11 0 7141 7242 560288306 560288205 2.120000e-25 128
20 TraesCS1A01G111300 chr3B 78.325 203 35 9 4338 4535 81816206 81816404 9.870000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G111300 chr1A 112035193 112042437 7244 True 13380.000000 13380 100.000 1 7245 1 chr1A.!!$R1 7244
1 TraesCS1A01G111300 chr1B 164708483 164715457 6974 True 10305.000000 10305 93.253 1 7066 1 chr1B.!!$R1 7065
2 TraesCS1A01G111300 chr1D 108829241 108836653 7412 True 1930.166667 5921 93.220 1 7062 6 chr1D.!!$R1 7061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.319986 TGTGCTTGTACCATTCGCGA 60.320 50.000 3.71 3.71 0.00 5.87 F
375 379 0.723414 AGCGATGTGTGATTGCTTCG 59.277 50.000 0.00 0.00 35.32 3.79 F
1407 1420 0.745845 GGTGCAGATTGGATGCTCGT 60.746 55.000 0.00 0.00 44.17 4.18 F
1408 1421 1.473257 GGTGCAGATTGGATGCTCGTA 60.473 52.381 0.00 0.00 44.17 3.43 F
3164 3177 1.345415 CAAGCCTTTCCAACAAGCCAT 59.655 47.619 0.00 0.00 0.00 4.40 F
3783 3856 2.766263 CAGACCTGGTTAGCTGGTATGA 59.234 50.000 23.95 0.00 43.41 2.15 F
5719 6121 2.618302 GGAGGGTTTCTGGGTTAAGCTC 60.618 54.545 4.41 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1190 1196 2.796383 GCGCATCAGCCTATATAGTCGG 60.796 54.545 0.30 0.0 37.52 4.79 R
2153 2166 1.269778 GGCTGTGCCTTTCTTTTGGAC 60.270 52.381 0.73 0.0 46.69 4.02 R
2866 2879 0.834612 TGACCCGTGTTTCTTCAGGT 59.165 50.000 0.00 0.0 0.00 4.00 R
3229 3242 4.574674 AATGCACACAGAAAGGGATAGA 57.425 40.909 0.00 0.0 0.00 1.98 R
4744 4818 3.365364 GCAATGCAGAACTCAACTGGTAC 60.365 47.826 0.00 0.0 36.09 3.34 R
5746 6148 0.538584 CCAGGACAGCTACAGCATGA 59.461 55.000 3.70 0.0 45.16 3.07 R
7153 7616 0.031721 GGACGAAATAGATCGCCCGT 59.968 55.000 0.00 0.0 46.51 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.663520 CGCGGTGTGCTTGTACCA 60.664 61.111 0.00 0.00 43.27 3.25
34 35 2.032634 CGCGGTGTGCTTGTACCAT 61.033 57.895 0.00 0.00 43.27 3.55
40 41 0.319986 TGTGCTTGTACCATTCGCGA 60.320 50.000 3.71 3.71 0.00 5.87
44 45 2.605818 TGCTTGTACCATTCGCGATTAC 59.394 45.455 10.88 9.97 0.00 1.89
46 47 3.308866 GCTTGTACCATTCGCGATTACTT 59.691 43.478 10.88 0.00 0.00 2.24
159 160 5.007682 TCTATTTTCCCCTTTTCGACCTTG 58.992 41.667 0.00 0.00 0.00 3.61
206 207 5.956642 TGCGGATTAGAAAATTTTGGTACC 58.043 37.500 8.47 4.43 0.00 3.34
231 232 1.867233 CTTGTGCGTACCAGATATGGC 59.133 52.381 6.21 0.00 0.00 4.40
303 304 1.532523 TTTGCTTCATCCGTGCATGA 58.467 45.000 7.72 0.00 36.55 3.07
358 362 9.953825 CTCGTTATTTCAATTCCGTATATTAGC 57.046 33.333 0.00 0.00 0.00 3.09
367 371 5.441709 TTCCGTATATTAGCGATGTGTGA 57.558 39.130 0.00 0.00 0.00 3.58
375 379 0.723414 AGCGATGTGTGATTGCTTCG 59.277 50.000 0.00 0.00 35.32 3.79
398 402 1.226746 GTGGCTTCAGTGCGTAGTTT 58.773 50.000 0.00 0.00 0.00 2.66
404 408 3.678072 GCTTCAGTGCGTAGTTTCACATA 59.322 43.478 0.00 0.00 35.76 2.29
408 412 6.016213 TCAGTGCGTAGTTTCACATACTTA 57.984 37.500 0.00 0.00 35.76 2.24
415 419 5.220322 CGTAGTTTCACATACTTAATGCGCA 60.220 40.000 14.96 14.96 39.39 6.09
419 423 7.757526 AGTTTCACATACTTAATGCGCAAATA 58.242 30.769 17.11 8.37 39.39 1.40
456 460 2.292267 GCATTGGGTCATACTGTGAGG 58.708 52.381 0.00 0.00 37.56 3.86
489 493 4.314522 TGGATGCTAATTTTGGGTCTGA 57.685 40.909 0.00 0.00 0.00 3.27
507 513 1.001974 TGACTGGGACGGAATTCAGTG 59.998 52.381 16.23 4.27 40.13 3.66
550 556 3.019564 CAAGCTCAGGGGGTTTATTCAG 58.980 50.000 0.00 0.00 0.00 3.02
557 563 2.081462 GGGGGTTTATTCAGTGTCACG 58.919 52.381 0.00 0.00 0.00 4.35
590 596 8.164070 AGTGTTATCATCTTAGTTGAAGGGTTT 58.836 33.333 0.00 0.00 35.67 3.27
599 605 1.068588 GTTGAAGGGTTTCTGTTGGGC 59.931 52.381 0.00 0.00 34.31 5.36
624 630 7.041848 GCTGTTTGTGATTTGGATTTAAGCTTT 60.042 33.333 3.20 0.00 0.00 3.51
630 636 7.178983 TGTGATTTGGATTTAAGCTTTGAGGAT 59.821 33.333 3.20 0.00 0.00 3.24
632 638 8.253113 TGATTTGGATTTAAGCTTTGAGGATTC 58.747 33.333 3.20 0.00 0.00 2.52
646 652 6.877611 TTGAGGATTCTTAACAGTTTGACC 57.122 37.500 0.00 0.00 0.00 4.02
647 653 5.935945 TGAGGATTCTTAACAGTTTGACCA 58.064 37.500 0.00 0.00 0.00 4.02
648 654 6.361433 TGAGGATTCTTAACAGTTTGACCAA 58.639 36.000 0.00 0.00 0.00 3.67
669 675 4.623932 ACTGTTATGGTCATCACACTGT 57.376 40.909 0.00 0.00 0.00 3.55
769 775 4.082787 CGAATGTTCCTTGCCAATTACTGT 60.083 41.667 0.00 0.00 0.00 3.55
778 784 7.853299 TCCTTGCCAATTACTGTACTAATACA 58.147 34.615 0.00 0.00 39.06 2.29
924 930 5.598416 TGAGTTCATACCCACATCTACTG 57.402 43.478 0.00 0.00 0.00 2.74
1007 1013 2.023741 CGATCGTGCAATGCAGGC 59.976 61.111 21.49 8.93 43.03 4.85
1026 1032 2.167900 GGCAGTACAGACCCGTAATCTT 59.832 50.000 0.00 0.00 0.00 2.40
1143 1149 3.569194 TTCACCTCTTGCTTTACACCA 57.431 42.857 0.00 0.00 0.00 4.17
1190 1196 6.783892 ACATCATTTTGTGTTTGGCAATAC 57.216 33.333 0.00 4.44 0.00 1.89
1226 1232 5.220548 GCTGATGCGCTATATAGTTCATTGG 60.221 44.000 9.73 11.03 0.00 3.16
1327 1334 4.756135 CGCCTAAACACCCTTGTAAACTTA 59.244 41.667 0.00 0.00 33.55 2.24
1367 1380 3.181473 CCTACAAATGGACCATTGCCATG 60.181 47.826 20.50 16.21 45.11 3.66
1373 1386 1.698532 TGGACCATTGCCATGCTTTTT 59.301 42.857 0.00 0.00 0.00 1.94
1407 1420 0.745845 GGTGCAGATTGGATGCTCGT 60.746 55.000 0.00 0.00 44.17 4.18
1408 1421 1.473257 GGTGCAGATTGGATGCTCGTA 60.473 52.381 0.00 0.00 44.17 3.43
1409 1422 2.279741 GTGCAGATTGGATGCTCGTAA 58.720 47.619 0.00 0.00 44.17 3.18
1410 1423 2.677836 GTGCAGATTGGATGCTCGTAAA 59.322 45.455 0.00 0.00 44.17 2.01
1411 1424 2.938451 TGCAGATTGGATGCTCGTAAAG 59.062 45.455 0.00 0.00 44.17 1.85
1412 1425 2.289002 GCAGATTGGATGCTCGTAAAGG 59.711 50.000 0.00 0.00 40.59 3.11
1457 1470 5.084519 TGGAACTATGTACTCCACACTTCT 58.915 41.667 0.00 0.00 40.86 2.85
1470 1483 6.484977 ACTCCACACTTCTTTTTCTTGATCTC 59.515 38.462 0.00 0.00 0.00 2.75
1506 1519 2.616376 CGAAATGTGTGAACTTGTCCCA 59.384 45.455 0.00 0.00 0.00 4.37
1508 1521 4.613622 CGAAATGTGTGAACTTGTCCCATC 60.614 45.833 0.00 0.00 0.00 3.51
1859 1872 9.379791 GTTTGGTGTATCTATAGCTAAGTTTGT 57.620 33.333 0.00 0.00 0.00 2.83
2108 2121 3.181487 TGTTTCAAGCAAAAGGAGTCTGC 60.181 43.478 0.00 0.00 36.29 4.26
2305 2318 4.457466 ACATCAACCCGTTTAGTGTTCTT 58.543 39.130 0.00 0.00 0.00 2.52
2537 2550 1.746787 TGGAGCTTATGCAGTGCAATG 59.253 47.619 23.90 10.38 43.62 2.82
2540 2553 3.432782 GAGCTTATGCAGTGCAATGAAC 58.567 45.455 23.90 10.91 43.62 3.18
2567 2580 2.621407 GCCAATCCTGTGAATGGAGGAA 60.621 50.000 0.89 0.00 43.21 3.36
2624 2637 2.041701 ACAATGGAATAGGCAATGGGC 58.958 47.619 0.00 0.00 43.74 5.36
2866 2879 6.611642 ACCTTTCTAGCCAAGATGAGTATGTA 59.388 38.462 3.66 0.00 33.05 2.29
2944 2957 7.048629 TGAAGAAATACAGGTCAATGCAAAA 57.951 32.000 0.00 0.00 0.00 2.44
2948 2961 7.500141 AGAAATACAGGTCAATGCAAAACTTT 58.500 30.769 0.00 0.00 0.00 2.66
3164 3177 1.345415 CAAGCCTTTCCAACAAGCCAT 59.655 47.619 0.00 0.00 0.00 4.40
3208 3221 9.577110 GATAATTCATCTTTTGAGCAACATCAA 57.423 29.630 0.00 0.00 37.41 2.57
3242 3255 3.217626 GTGCCCATTCTATCCCTTTCTG 58.782 50.000 0.00 0.00 0.00 3.02
3365 3378 5.005203 GCTTCTACGAATCATCACTGACTTG 59.995 44.000 0.00 0.00 33.22 3.16
3425 3438 6.298361 TCCTCATTTCTTCTTGAACATGTGA 58.702 36.000 0.00 0.00 33.88 3.58
3426 3439 6.772233 TCCTCATTTCTTCTTGAACATGTGAA 59.228 34.615 0.00 0.00 33.88 3.18
3427 3440 7.285172 TCCTCATTTCTTCTTGAACATGTGAAA 59.715 33.333 0.00 3.33 33.88 2.69
3428 3441 8.086522 CCTCATTTCTTCTTGAACATGTGAAAT 58.913 33.333 0.00 5.70 33.88 2.17
3429 3442 8.806177 TCATTTCTTCTTGAACATGTGAAATG 57.194 30.769 25.15 25.15 44.73 2.32
3430 3443 8.415553 TCATTTCTTCTTGAACATGTGAAATGT 58.584 29.630 27.38 5.55 44.22 2.71
3431 3444 7.990541 TTTCTTCTTGAACATGTGAAATGTG 57.009 32.000 0.00 0.00 33.88 3.21
3477 3490 8.973378 CGCTTTTATTACTTGTTGGATTGAAAA 58.027 29.630 0.00 0.00 0.00 2.29
3506 3519 6.198687 ACAAGATTTTGTGTTACACATCACG 58.801 36.000 19.32 10.79 45.54 4.35
3534 3547 5.449999 GGTTTTATGCACTTGGGTAGTATGC 60.450 44.000 0.00 0.00 34.56 3.14
3541 3554 4.273480 GCACTTGGGTAGTATGCTGTTATG 59.727 45.833 0.00 0.00 34.56 1.90
3587 3600 9.317827 AGACAGTAGTAGGGAAATTTTACTACA 57.682 33.333 25.98 14.92 46.16 2.74
3589 3602 9.939802 ACAGTAGTAGGGAAATTTTACTACAAG 57.060 33.333 25.98 21.83 46.16 3.16
3604 3617 4.329462 CTACAAGAGTAGGAGGGAATGC 57.671 50.000 0.00 0.00 43.24 3.56
3687 3701 6.869913 CACATGGTTACATTGCTCAATTTTCT 59.130 34.615 0.00 0.00 34.35 2.52
3732 3801 7.067372 TCACTTGTATGGACCATTCATTTCATC 59.933 37.037 13.40 0.00 0.00 2.92
3783 3856 2.766263 CAGACCTGGTTAGCTGGTATGA 59.234 50.000 23.95 0.00 43.41 2.15
3819 3892 5.583457 ACCTTACTTTTCGTGCCATGTATAC 59.417 40.000 0.00 0.00 0.00 1.47
3820 3893 5.815740 CCTTACTTTTCGTGCCATGTATACT 59.184 40.000 4.17 0.00 0.00 2.12
3870 3943 9.987901 CTATTTTGTACTTTTTATGCAAACACG 57.012 29.630 0.00 0.00 32.37 4.49
3994 4067 2.939103 AGTTCAGCAACTGGAATATCGC 59.061 45.455 0.00 0.00 41.64 4.58
4129 4202 6.709846 CCTGGTTATCATCTCTTGATTCCTTC 59.290 42.308 0.00 0.00 42.62 3.46
4622 4695 4.015764 TGCAGCCTATTTCATAGCAACAA 58.984 39.130 0.00 0.00 0.00 2.83
4629 4702 6.914757 GCCTATTTCATAGCAACAATGAACTC 59.085 38.462 0.00 0.00 41.73 3.01
4693 4766 8.768397 TCAGTGACCTTAATATGGACAATAAGT 58.232 33.333 0.00 0.00 31.83 2.24
4709 4782 9.431887 GGACAATAAGTGACATCTGTTTACTTA 57.568 33.333 16.52 16.52 39.70 2.24
4744 4818 6.038382 ACTTGATCATCTTCTGCATAGCTTTG 59.962 38.462 0.00 0.00 0.00 2.77
4830 4904 6.849305 CGTAATGTAGGATAACGGAAAAATGC 59.151 38.462 0.00 0.00 0.00 3.56
4832 4906 3.949113 TGTAGGATAACGGAAAAATGCCC 59.051 43.478 0.00 0.00 0.00 5.36
4887 4961 9.436957 ACTGTAATAAACTCAGTGACCTTAATG 57.563 33.333 0.00 0.00 40.29 1.90
4889 4963 8.100791 TGTAATAAACTCAGTGACCTTAATGCT 58.899 33.333 0.00 0.00 0.00 3.79
4919 4993 5.615925 AGGAGACATCGGCTTAATTTAGT 57.384 39.130 0.00 0.00 0.00 2.24
4927 5001 9.353999 GACATCGGCTTAATTTAGTTTTTCAAT 57.646 29.630 0.00 0.00 0.00 2.57
5089 5165 3.131400 GGGAGAGTAGTTCAGCTAGTTGG 59.869 52.174 6.75 0.00 33.68 3.77
5178 5254 2.871182 TCGAGTGGTGTCATCTATGC 57.129 50.000 0.00 0.00 0.00 3.14
5191 5267 4.694509 GTCATCTATGCATCTGGTGGATTC 59.305 45.833 0.19 0.00 39.78 2.52
5206 5282 4.503296 GGTGGATTCGATGGTAGCAAGTAT 60.503 45.833 0.00 0.00 0.00 2.12
5250 5326 8.568794 GCTATTTTCCTCCATTATGTTACTTCC 58.431 37.037 0.00 0.00 0.00 3.46
5251 5327 9.627123 CTATTTTCCTCCATTATGTTACTTCCA 57.373 33.333 0.00 0.00 0.00 3.53
5253 5329 7.880160 TTTCCTCCATTATGTTACTTCCATG 57.120 36.000 0.00 0.00 0.00 3.66
5286 5363 5.538433 ACTTTTAAGTGCTTTAGGGCATTGA 59.462 36.000 0.00 0.00 44.34 2.57
5295 5372 4.440145 GGGCATTGACACCCATGT 57.560 55.556 0.00 0.00 46.22 3.21
5445 5522 9.994432 CTATAAATGGTTCTGACACATTCTTTC 57.006 33.333 6.50 0.00 34.00 2.62
5479 5556 9.797642 TGCTAATATGACCACTTGAATGATAAT 57.202 29.630 0.00 0.00 0.00 1.28
5485 5562 8.627208 ATGACCACTTGAATGATAATATGACC 57.373 34.615 0.00 0.00 0.00 4.02
5486 5563 7.572814 TGACCACTTGAATGATAATATGACCA 58.427 34.615 0.00 0.00 0.00 4.02
5487 5564 7.498900 TGACCACTTGAATGATAATATGACCAC 59.501 37.037 0.00 0.00 0.00 4.16
5488 5565 7.577303 ACCACTTGAATGATAATATGACCACT 58.423 34.615 0.00 0.00 0.00 4.00
5489 5566 8.055181 ACCACTTGAATGATAATATGACCACTT 58.945 33.333 0.00 0.00 0.00 3.16
5490 5567 8.347771 CCACTTGAATGATAATATGACCACTTG 58.652 37.037 0.00 0.00 0.00 3.16
5491 5568 9.112725 CACTTGAATGATAATATGACCACTTGA 57.887 33.333 0.00 0.00 0.00 3.02
5492 5569 9.685276 ACTTGAATGATAATATGACCACTTGAA 57.315 29.630 0.00 0.00 0.00 2.69
5495 5572 9.850198 TGAATGATAATATGACCACTTGAATGA 57.150 29.630 0.00 0.00 0.00 2.57
5719 6121 2.618302 GGAGGGTTTCTGGGTTAAGCTC 60.618 54.545 4.41 0.00 0.00 4.09
5746 6148 3.618351 CATGAAAGCAAGGAGAGGATGT 58.382 45.455 0.00 0.00 0.00 3.06
5755 6157 3.037851 AGGAGAGGATGTCATGCTGTA 57.962 47.619 12.09 0.00 0.00 2.74
5816 6218 7.290857 TGTTATTTTAGATCTCGCTGAACAC 57.709 36.000 0.00 0.00 0.00 3.32
5817 6219 6.871492 TGTTATTTTAGATCTCGCTGAACACA 59.129 34.615 0.00 0.00 0.00 3.72
5818 6220 7.386573 TGTTATTTTAGATCTCGCTGAACACAA 59.613 33.333 0.00 0.00 0.00 3.33
5819 6221 6.801539 ATTTTAGATCTCGCTGAACACAAA 57.198 33.333 0.00 0.00 0.00 2.83
5820 6222 5.845985 TTTAGATCTCGCTGAACACAAAG 57.154 39.130 0.00 0.00 0.00 2.77
5856 6263 4.183865 GGGCATTAATCTTGGCAAGAAAC 58.816 43.478 31.57 17.03 41.63 2.78
5868 6275 3.244561 TGGCAAGAAACTGAGTTAGGAGG 60.245 47.826 0.00 0.00 0.00 4.30
5888 6295 7.349598 AGGAGGTTTATTGTTTCAGATATGCT 58.650 34.615 0.00 0.00 0.00 3.79
6091 6498 4.922692 TGTAAGTAAACATTGTACCGACGG 59.077 41.667 13.61 13.61 0.00 4.79
6104 6511 1.571215 CCGACGGTTAACTGTTGCCC 61.571 60.000 24.26 10.69 35.70 5.36
6347 6754 2.552315 CGAAAAGCAGTTTTAGGGCTCA 59.448 45.455 0.00 0.00 35.94 4.26
6363 6771 1.280421 GCTCATTGTCTCACCCTTCCT 59.720 52.381 0.00 0.00 0.00 3.36
6382 6790 4.326826 TCCTTTTGAGCTCCAGTTATGTG 58.673 43.478 12.15 0.00 0.00 3.21
6505 6913 7.444183 AGAATGTTCTGAATTCTCGTTAAACCA 59.556 33.333 7.05 0.00 39.63 3.67
6511 6939 5.617252 TGAATTCTCGTTAAACCAGGAACT 58.383 37.500 7.05 0.00 43.88 3.01
6568 6996 3.760151 TCTGAATGCTAATTTGCTGCTGT 59.240 39.130 12.99 0.00 0.00 4.40
6590 7018 8.056571 GCTGTCGTATCTTATTGAATGTGTTAC 58.943 37.037 0.00 0.00 0.00 2.50
6632 7060 4.589216 TGCAATCTTTCTGAAACCTTGG 57.411 40.909 15.90 2.45 0.00 3.61
6665 7093 3.189495 GGTAGAGGCAAGCTTCTGAAAAC 59.811 47.826 15.87 6.61 34.22 2.43
6670 7098 1.664302 GCAAGCTTCTGAAAACTCGCC 60.664 52.381 0.00 0.00 0.00 5.54
6676 7104 4.214332 AGCTTCTGAAAACTCGCCTAAAAG 59.786 41.667 0.00 0.00 0.00 2.27
6678 7106 5.418310 TTCTGAAAACTCGCCTAAAAGTG 57.582 39.130 0.00 0.00 0.00 3.16
6719 7147 2.495270 AGTGTTGTGTGTGATTTTGCCA 59.505 40.909 0.00 0.00 0.00 4.92
6724 7152 3.915536 TGTGTGTGATTTTGCCATGATG 58.084 40.909 0.00 0.00 0.00 3.07
6770 7198 4.405358 TGCCTTTCTGAGTTTCCAAAACAT 59.595 37.500 5.46 0.00 0.00 2.71
6779 7207 5.047377 TGAGTTTCCAAAACATTATCCAGCC 60.047 40.000 5.46 0.00 0.00 4.85
6795 7223 1.133790 CAGCCTGCTAATGTTCTTGCC 59.866 52.381 0.00 0.00 0.00 4.52
6806 7234 2.241160 TGTTCTTGCCTTGCATCACAT 58.759 42.857 0.00 0.00 38.76 3.21
6815 7243 2.009051 CTTGCATCACATCCTTGCGTA 58.991 47.619 0.00 0.00 39.23 4.42
6816 7244 1.655484 TGCATCACATCCTTGCGTAG 58.345 50.000 0.00 0.00 39.23 3.51
6819 7247 0.179045 ATCACATCCTTGCGTAGGGC 60.179 55.000 0.00 0.00 44.86 5.19
6911 7359 0.037877 CCCTGGCTCATCATGGGATC 59.962 60.000 0.00 0.00 40.23 3.36
6938 7391 1.891060 GCCGCTTCTTGTGACACTCG 61.891 60.000 7.20 0.00 0.00 4.18
6964 7426 3.616560 CGTATCACTTTATCGGGGATGGG 60.617 52.174 0.00 0.00 0.00 4.00
6966 7428 1.136828 CACTTTATCGGGGATGGGGA 58.863 55.000 0.00 0.00 0.00 4.81
6967 7429 1.705186 CACTTTATCGGGGATGGGGAT 59.295 52.381 0.00 0.00 0.00 3.85
6968 7430 1.705186 ACTTTATCGGGGATGGGGATG 59.295 52.381 0.00 0.00 0.00 3.51
6969 7431 1.705186 CTTTATCGGGGATGGGGATGT 59.295 52.381 0.00 0.00 0.00 3.06
6973 7435 0.033601 TCGGGGATGGGGATGTTTTG 60.034 55.000 0.00 0.00 0.00 2.44
6974 7436 0.324275 CGGGGATGGGGATGTTTTGT 60.324 55.000 0.00 0.00 0.00 2.83
6975 7437 1.194218 GGGGATGGGGATGTTTTGTG 58.806 55.000 0.00 0.00 0.00 3.33
6976 7438 0.536724 GGGATGGGGATGTTTTGTGC 59.463 55.000 0.00 0.00 0.00 4.57
7052 7515 6.128795 GGTTTCTCGTGTCTGTATTTCTGAAG 60.129 42.308 0.00 0.00 0.00 3.02
7088 7551 9.515020 TTTTGTCTTGTGTTGATAGATTTTGAC 57.485 29.630 0.00 0.00 0.00 3.18
7089 7552 6.887368 TGTCTTGTGTTGATAGATTTTGACG 58.113 36.000 0.00 0.00 0.00 4.35
7090 7553 6.704050 TGTCTTGTGTTGATAGATTTTGACGA 59.296 34.615 0.00 0.00 0.00 4.20
7091 7554 7.225734 TGTCTTGTGTTGATAGATTTTGACGAA 59.774 33.333 0.00 0.00 0.00 3.85
7092 7555 8.230486 GTCTTGTGTTGATAGATTTTGACGAAT 58.770 33.333 0.00 0.00 0.00 3.34
7093 7556 8.783093 TCTTGTGTTGATAGATTTTGACGAATT 58.217 29.630 0.00 0.00 0.00 2.17
7094 7557 9.398170 CTTGTGTTGATAGATTTTGACGAATTT 57.602 29.630 0.00 0.00 0.00 1.82
7095 7558 9.743057 TTGTGTTGATAGATTTTGACGAATTTT 57.257 25.926 0.00 0.00 0.00 1.82
7096 7559 9.743057 TGTGTTGATAGATTTTGACGAATTTTT 57.257 25.926 0.00 0.00 0.00 1.94
7101 7564 9.220635 TGATAGATTTTGACGAATTTTTATGCG 57.779 29.630 0.00 0.00 0.00 4.73
7102 7565 9.433317 GATAGATTTTGACGAATTTTTATGCGA 57.567 29.630 0.00 0.00 0.00 5.10
7103 7566 9.950680 ATAGATTTTGACGAATTTTTATGCGAT 57.049 25.926 0.00 0.00 0.00 4.58
7104 7567 8.687824 AGATTTTGACGAATTTTTATGCGATT 57.312 26.923 0.00 0.00 0.00 3.34
7105 7568 9.781834 AGATTTTGACGAATTTTTATGCGATTA 57.218 25.926 0.00 0.00 0.00 1.75
7108 7571 8.903570 TTTGACGAATTTTTATGCGATTATGT 57.096 26.923 0.00 0.00 0.00 2.29
7109 7572 9.989869 TTTGACGAATTTTTATGCGATTATGTA 57.010 25.926 0.00 0.00 0.00 2.29
7110 7573 8.981370 TGACGAATTTTTATGCGATTATGTAC 57.019 30.769 0.00 0.00 0.00 2.90
7111 7574 8.822855 TGACGAATTTTTATGCGATTATGTACT 58.177 29.630 0.00 0.00 0.00 2.73
7112 7575 9.646336 GACGAATTTTTATGCGATTATGTACTT 57.354 29.630 0.00 0.00 0.00 2.24
7113 7576 9.646336 ACGAATTTTTATGCGATTATGTACTTC 57.354 29.630 0.00 0.00 0.00 3.01
7114 7577 9.864034 CGAATTTTTATGCGATTATGTACTTCT 57.136 29.630 0.00 0.00 0.00 2.85
7118 7581 8.710835 TTTTATGCGATTATGTACTTCTCACA 57.289 30.769 0.00 0.00 0.00 3.58
7119 7582 8.887036 TTTATGCGATTATGTACTTCTCACAT 57.113 30.769 0.00 0.00 39.82 3.21
7120 7583 8.887036 TTATGCGATTATGTACTTCTCACATT 57.113 30.769 0.00 0.00 37.74 2.71
7121 7584 9.974980 TTATGCGATTATGTACTTCTCACATTA 57.025 29.630 0.00 0.00 37.74 1.90
7122 7585 7.930513 TGCGATTATGTACTTCTCACATTAG 57.069 36.000 0.00 0.00 37.74 1.73
7123 7586 7.489160 TGCGATTATGTACTTCTCACATTAGT 58.511 34.615 0.00 0.00 37.74 2.24
7125 7588 7.435488 GCGATTATGTACTTCTCACATTAGTGT 59.565 37.037 0.00 0.00 46.01 3.55
7145 7608 6.114221 GTGTGTACACTTTTTGTTAGAGCA 57.886 37.500 25.60 0.00 43.25 4.26
7146 7609 6.548171 GTGTGTACACTTTTTGTTAGAGCAA 58.452 36.000 25.60 0.00 43.25 3.91
7147 7610 6.468000 GTGTGTACACTTTTTGTTAGAGCAAC 59.532 38.462 25.60 6.86 43.25 4.17
7148 7611 6.373216 TGTGTACACTTTTTGTTAGAGCAACT 59.627 34.615 25.60 0.00 39.91 3.16
7149 7612 7.094549 TGTGTACACTTTTTGTTAGAGCAACTT 60.095 33.333 25.60 0.00 39.91 2.66
7150 7613 7.753580 GTGTACACTTTTTGTTAGAGCAACTTT 59.246 33.333 18.92 0.00 39.91 2.66
7151 7614 8.948145 TGTACACTTTTTGTTAGAGCAACTTTA 58.052 29.630 0.00 0.00 39.91 1.85
7152 7615 9.777575 GTACACTTTTTGTTAGAGCAACTTTAA 57.222 29.630 0.00 0.00 39.91 1.52
7154 7617 9.135843 ACACTTTTTGTTAGAGCAACTTTAAAC 57.864 29.630 0.00 0.00 38.05 2.01
7155 7618 8.311120 CACTTTTTGTTAGAGCAACTTTAAACG 58.689 33.333 0.00 0.00 38.05 3.60
7156 7619 7.486870 ACTTTTTGTTAGAGCAACTTTAAACGG 59.513 33.333 0.00 0.00 38.05 4.44
7157 7620 5.427036 TTGTTAGAGCAACTTTAAACGGG 57.573 39.130 0.00 0.00 38.05 5.28
7158 7621 3.251487 TGTTAGAGCAACTTTAAACGGGC 59.749 43.478 0.00 0.00 38.05 6.13
7159 7622 0.872388 AGAGCAACTTTAAACGGGCG 59.128 50.000 0.00 0.00 0.00 6.13
7160 7623 0.869730 GAGCAACTTTAAACGGGCGA 59.130 50.000 0.00 0.00 0.00 5.54
7161 7624 1.467342 GAGCAACTTTAAACGGGCGAT 59.533 47.619 0.00 0.00 0.00 4.58
7162 7625 1.467342 AGCAACTTTAAACGGGCGATC 59.533 47.619 0.00 0.00 0.00 3.69
7163 7626 1.467342 GCAACTTTAAACGGGCGATCT 59.533 47.619 0.00 0.00 0.00 2.75
7164 7627 2.674357 GCAACTTTAAACGGGCGATCTA 59.326 45.455 0.00 0.00 0.00 1.98
7165 7628 3.311596 GCAACTTTAAACGGGCGATCTAT 59.688 43.478 0.00 0.00 0.00 1.98
7166 7629 4.201881 GCAACTTTAAACGGGCGATCTATT 60.202 41.667 0.00 0.00 0.00 1.73
7167 7630 5.675323 GCAACTTTAAACGGGCGATCTATTT 60.675 40.000 0.00 0.00 0.00 1.40
7168 7631 5.729974 ACTTTAAACGGGCGATCTATTTC 57.270 39.130 0.00 0.00 0.00 2.17
7169 7632 4.269363 ACTTTAAACGGGCGATCTATTTCG 59.731 41.667 0.00 0.00 41.99 3.46
7170 7633 2.304751 AAACGGGCGATCTATTTCGT 57.695 45.000 0.00 0.00 41.16 3.85
7171 7634 1.849097 AACGGGCGATCTATTTCGTC 58.151 50.000 0.00 0.00 42.81 4.20
7174 7637 2.142641 GGCGATCTATTTCGTCCGC 58.857 57.895 0.00 0.00 41.16 5.54
7175 7638 1.606350 GGCGATCTATTTCGTCCGCG 61.606 60.000 0.00 0.00 43.03 6.46
7176 7639 1.606350 GCGATCTATTTCGTCCGCGG 61.606 60.000 22.12 22.12 41.16 6.46
7177 7640 1.606350 CGATCTATTTCGTCCGCGGC 61.606 60.000 23.51 15.21 38.89 6.53
7178 7641 1.282930 GATCTATTTCGTCCGCGGCC 61.283 60.000 23.51 8.79 38.89 6.13
7179 7642 3.327754 CTATTTCGTCCGCGGCCG 61.328 66.667 24.62 24.62 38.89 6.13
7180 7643 4.132441 TATTTCGTCCGCGGCCGT 62.132 61.111 28.95 12.23 38.89 5.68
7181 7644 3.646023 TATTTCGTCCGCGGCCGTT 62.646 57.895 28.95 16.49 38.89 4.44
7191 7654 3.719144 CGGCCGTTCGTTTGGGTC 61.719 66.667 19.50 0.00 0.00 4.46
7192 7655 3.719144 GGCCGTTCGTTTGGGTCG 61.719 66.667 0.00 0.00 0.00 4.79
7193 7656 3.719144 GCCGTTCGTTTGGGTCGG 61.719 66.667 0.00 0.00 43.37 4.79
7194 7657 3.719144 CCGTTCGTTTGGGTCGGC 61.719 66.667 0.00 0.00 35.01 5.54
7195 7658 4.067016 CGTTCGTTTGGGTCGGCG 62.067 66.667 0.00 0.00 0.00 6.46
7196 7659 4.379143 GTTCGTTTGGGTCGGCGC 62.379 66.667 0.00 0.00 0.00 6.53
7206 7669 3.039588 GTCGGCGCGGACAGAAAA 61.040 61.111 34.74 4.76 36.91 2.29
7207 7670 2.736995 TCGGCGCGGACAGAAAAG 60.737 61.111 14.27 0.00 0.00 2.27
7208 7671 2.736995 CGGCGCGGACAGAAAAGA 60.737 61.111 9.72 0.00 0.00 2.52
7209 7672 2.861006 GGCGCGGACAGAAAAGAC 59.139 61.111 8.83 0.00 0.00 3.01
7210 7673 2.470286 GCGCGGACAGAAAAGACG 59.530 61.111 8.83 0.00 0.00 4.18
7211 7674 3.011760 GCGCGGACAGAAAAGACGG 62.012 63.158 8.83 0.00 0.00 4.79
7212 7675 2.861006 GCGGACAGAAAAGACGGC 59.139 61.111 0.00 0.00 0.00 5.68
7213 7676 2.677979 GCGGACAGAAAAGACGGCC 61.678 63.158 0.00 0.00 0.00 6.13
7214 7677 2.033194 CGGACAGAAAAGACGGCCC 61.033 63.158 0.00 0.00 0.00 5.80
7215 7678 1.072505 GGACAGAAAAGACGGCCCA 59.927 57.895 0.00 0.00 0.00 5.36
7216 7679 0.536460 GGACAGAAAAGACGGCCCAA 60.536 55.000 0.00 0.00 0.00 4.12
7217 7680 0.591659 GACAGAAAAGACGGCCCAAC 59.408 55.000 0.00 0.00 0.00 3.77
7218 7681 1.164041 ACAGAAAAGACGGCCCAACG 61.164 55.000 0.00 0.00 40.31 4.10
7219 7682 2.254350 GAAAAGACGGCCCAACGC 59.746 61.111 0.00 0.00 37.37 4.84
7220 7683 2.517402 AAAAGACGGCCCAACGCA 60.517 55.556 0.00 0.00 40.31 5.24
7221 7684 1.862602 GAAAAGACGGCCCAACGCAT 61.863 55.000 0.00 0.00 40.31 4.73
7222 7685 1.862602 AAAAGACGGCCCAACGCATC 61.863 55.000 0.00 0.00 40.31 3.91
7229 7692 2.359354 CCCAACGCATCGACCCAA 60.359 61.111 0.00 0.00 0.00 4.12
7230 7693 1.969064 CCCAACGCATCGACCCAAA 60.969 57.895 0.00 0.00 0.00 3.28
7231 7694 1.312371 CCCAACGCATCGACCCAAAT 61.312 55.000 0.00 0.00 0.00 2.32
7232 7695 0.179166 CCAACGCATCGACCCAAATG 60.179 55.000 0.00 0.00 0.00 2.32
7233 7696 0.179166 CAACGCATCGACCCAAATGG 60.179 55.000 0.00 0.00 41.37 3.16
7234 7697 0.322098 AACGCATCGACCCAAATGGA 60.322 50.000 0.00 0.00 37.39 3.41
7235 7698 1.024579 ACGCATCGACCCAAATGGAC 61.025 55.000 0.00 0.00 37.39 4.02
7239 7702 4.160635 CGACCCAAATGGACGCGC 62.161 66.667 5.73 0.00 44.79 6.86
7240 7703 4.160635 GACCCAAATGGACGCGCG 62.161 66.667 30.96 30.96 37.39 6.86
7242 7705 3.732892 CCCAAATGGACGCGCGTT 61.733 61.111 38.03 19.52 37.39 4.84
7243 7706 2.254051 CCAAATGGACGCGCGTTT 59.746 55.556 38.03 24.61 37.39 3.60
7244 7707 2.080062 CCAAATGGACGCGCGTTTG 61.080 57.895 38.03 32.59 37.39 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.906354 AGGCAAGAAGTAATCGCGAAT 58.094 42.857 15.24 7.65 0.00 3.34
34 35 2.380084 AGGCAAGAAGTAATCGCGAA 57.620 45.000 15.24 0.00 0.00 4.70
159 160 7.062255 GCAAAATAAGCATAGAAACAACAGGAC 59.938 37.037 0.00 0.00 0.00 3.85
206 207 0.599991 TCTGGTACGCACAAGCACTG 60.600 55.000 0.00 0.00 42.27 3.66
231 232 3.244911 ACCACACAAGTTATCTTCCAGGG 60.245 47.826 0.00 0.00 0.00 4.45
330 331 7.956420 ATATACGGAATTGAAATAACGAGCA 57.044 32.000 0.00 0.00 0.00 4.26
358 362 1.358877 TCCGAAGCAATCACACATCG 58.641 50.000 0.00 0.00 0.00 3.84
367 371 1.098050 GAAGCCACATCCGAAGCAAT 58.902 50.000 0.00 0.00 0.00 3.56
375 379 0.391130 TACGCACTGAAGCCACATCC 60.391 55.000 0.00 0.00 0.00 3.51
398 402 5.747565 GCTATTTGCGCATTAAGTATGTGA 58.252 37.500 12.75 0.00 45.64 3.58
415 419 5.056480 TGCATACATTGTAGAGCGCTATTT 58.944 37.500 11.50 1.03 0.00 1.40
419 423 2.602257 TGCATACATTGTAGAGCGCT 57.398 45.000 11.27 11.27 0.00 5.92
449 453 2.149578 CAAGCTTCAGGAACCTCACAG 58.850 52.381 0.00 0.00 0.00 3.66
456 460 1.831580 AGCATCCAAGCTTCAGGAAC 58.168 50.000 9.42 5.59 43.70 3.62
489 493 1.056660 ACACTGAATTCCGTCCCAGT 58.943 50.000 2.27 0.00 40.15 4.00
507 513 2.808543 AGCGACAAGAACCAGATCAAAC 59.191 45.455 0.00 0.00 0.00 2.93
550 556 1.705337 AACACTGCACAGCGTGACAC 61.705 55.000 10.48 0.00 36.88 3.67
557 563 4.872691 ACTAAGATGATAACACTGCACAGC 59.127 41.667 0.00 0.00 0.00 4.40
590 596 2.363306 ATCACAAACAGCCCAACAGA 57.637 45.000 0.00 0.00 0.00 3.41
599 605 7.951530 AAGCTTAAATCCAAATCACAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
624 630 5.935945 TGGTCAAACTGTTAAGAATCCTCA 58.064 37.500 0.00 0.00 0.00 3.86
646 652 4.756642 ACAGTGTGATGACCATAACAGTTG 59.243 41.667 5.32 7.43 34.36 3.16
647 653 4.973168 ACAGTGTGATGACCATAACAGTT 58.027 39.130 5.32 0.00 34.36 3.16
648 654 4.284490 AGACAGTGTGATGACCATAACAGT 59.716 41.667 0.00 1.65 36.48 3.55
658 664 3.387699 TCCAAGTCAAGACAGTGTGATGA 59.612 43.478 0.00 1.54 0.00 2.92
669 675 6.603201 ACTGAAACAAGAATTCCAAGTCAAGA 59.397 34.615 0.65 0.00 0.00 3.02
778 784 5.828328 GCCAAGCTGTATCTAAATAAACCCT 59.172 40.000 0.00 0.00 0.00 4.34
814 820 3.144506 CTCTAGGCAGGGCATACAAATG 58.855 50.000 0.00 0.00 36.09 2.32
1007 1013 3.488721 CCGAAGATTACGGGTCTGTACTG 60.489 52.174 0.00 0.00 45.65 2.74
1190 1196 2.796383 GCGCATCAGCCTATATAGTCGG 60.796 54.545 0.30 0.00 37.52 4.79
1226 1232 9.285770 GCTACAATATTTTGTAACTTAAGGCAC 57.714 33.333 7.53 4.69 45.29 5.01
1279 1285 6.786207 GCCTTAAAGCCTGACTAAAATACTG 58.214 40.000 0.00 0.00 0.00 2.74
1367 1380 6.089954 GCACCATCAGAATTAGAACAAAAAGC 59.910 38.462 0.00 0.00 0.00 3.51
1373 1386 5.164620 TCTGCACCATCAGAATTAGAACA 57.835 39.130 0.00 0.00 39.89 3.18
1428 1441 9.209048 AGTGTGGAGTACATAGTTCCATAAATA 57.791 33.333 4.28 0.00 42.54 1.40
1429 1442 8.090788 AGTGTGGAGTACATAGTTCCATAAAT 57.909 34.615 4.28 0.00 42.54 1.40
1436 1449 7.964604 AAAAGAAGTGTGGAGTACATAGTTC 57.035 36.000 10.88 10.88 45.65 3.01
1457 1470 8.474831 TCTATCCACATACGAGATCAAGAAAAA 58.525 33.333 0.00 0.00 0.00 1.94
1470 1483 4.148871 CACATTTCGCTCTATCCACATACG 59.851 45.833 0.00 0.00 0.00 3.06
1506 1519 5.240891 CCTATAACACATCAAGATGGCGAT 58.759 41.667 14.04 5.07 42.91 4.58
1508 1521 3.748048 CCCTATAACACATCAAGATGGCG 59.252 47.826 14.04 7.43 42.91 5.69
1561 1574 9.546428 AATTAGGGTGAGAAATTCAACAAAAAG 57.454 29.630 0.00 0.00 45.78 2.27
1564 1577 9.362151 ACTAATTAGGGTGAGAAATTCAACAAA 57.638 29.630 16.73 0.00 45.78 2.83
1800 1813 8.298854 TGAACACTGTTTGGAGATTCATATTTG 58.701 33.333 0.00 0.00 0.00 2.32
2108 2121 6.469410 TGTTAGTTGATGGTAAAGGTACAGG 58.531 40.000 0.00 0.00 31.21 4.00
2153 2166 1.269778 GGCTGTGCCTTTCTTTTGGAC 60.270 52.381 0.73 0.00 46.69 4.02
2537 2550 0.893727 ACAGGATTGGCAACCGGTTC 60.894 55.000 19.24 12.36 31.20 3.62
2540 2553 0.893270 TTCACAGGATTGGCAACCGG 60.893 55.000 0.00 9.54 0.00 5.28
2567 2580 6.054295 GCATGTCTCCATTAGAAGAATGACT 58.946 40.000 0.00 0.00 35.47 3.41
2624 2637 6.588756 CCAACACCATCTGATTCATTTTGAAG 59.411 38.462 0.00 0.00 40.05 3.02
2866 2879 0.834612 TGACCCGTGTTTCTTCAGGT 59.165 50.000 0.00 0.00 0.00 4.00
2948 2961 8.996651 TCAGGTACATATTCATCTTGACTAGA 57.003 34.615 0.00 0.00 37.28 2.43
3164 3177 8.479689 TGAATTATCTTCCACGGTAGAACATAA 58.520 33.333 0.00 1.14 0.00 1.90
3229 3242 4.574674 AATGCACACAGAAAGGGATAGA 57.425 40.909 0.00 0.00 0.00 1.98
3425 3438 7.981225 GCCAATCAATAGTTACATTCCACATTT 59.019 33.333 0.00 0.00 0.00 2.32
3426 3439 7.491682 GCCAATCAATAGTTACATTCCACATT 58.508 34.615 0.00 0.00 0.00 2.71
3427 3440 6.238731 CGCCAATCAATAGTTACATTCCACAT 60.239 38.462 0.00 0.00 0.00 3.21
3428 3441 5.065859 CGCCAATCAATAGTTACATTCCACA 59.934 40.000 0.00 0.00 0.00 4.17
3429 3442 5.510671 CGCCAATCAATAGTTACATTCCAC 58.489 41.667 0.00 0.00 0.00 4.02
3430 3443 4.036262 GCGCCAATCAATAGTTACATTCCA 59.964 41.667 0.00 0.00 0.00 3.53
3431 3444 4.275936 AGCGCCAATCAATAGTTACATTCC 59.724 41.667 2.29 0.00 0.00 3.01
3534 3547 4.576463 CCTCGAGAAAAATCCCCATAACAG 59.424 45.833 15.71 0.00 0.00 3.16
3587 3600 4.273300 AGTAGCATTCCCTCCTACTCTT 57.727 45.455 0.00 0.00 37.77 2.85
3589 3602 3.827876 GGTAGTAGCATTCCCTCCTACTC 59.172 52.174 3.11 0.00 40.51 2.59
3650 3663 5.505780 TGTAACCATGTGGGAATCCTTAAG 58.494 41.667 0.00 0.00 41.15 1.85
3687 3701 5.804639 AGTGAGCATAAATCACAGTGGTAA 58.195 37.500 8.62 0.00 34.04 2.85
3761 3830 2.320681 TACCAGCTAACCAGGTCTGT 57.679 50.000 0.00 0.00 36.87 3.41
3783 3856 7.280205 CACGAAAAGTAAGGTAGCCAGATTTAT 59.720 37.037 0.00 0.00 0.00 1.40
3934 4007 8.770828 TCTTTAACTACTTCCTTCAACGAAATG 58.229 33.333 0.00 0.00 0.00 2.32
4622 4695 6.438741 TGACAAGACTAGGAGAATGAGTTCAT 59.561 38.462 0.00 0.00 36.79 2.57
4629 4702 6.018098 GCAATCATGACAAGACTAGGAGAATG 60.018 42.308 0.00 0.00 0.00 2.67
4709 4782 8.985805 GCAGAAGATGATCAAGTTGAAAATTTT 58.014 29.630 10.14 2.28 0.00 1.82
4744 4818 3.365364 GCAATGCAGAACTCAACTGGTAC 60.365 47.826 0.00 0.00 36.09 3.34
4821 4895 9.665719 TTCTAATTAATTCAAGGGCATTTTTCC 57.334 29.630 3.39 0.00 0.00 3.13
4887 4961 3.929610 GCCGATGTCTCCTATTTGATAGC 59.070 47.826 0.00 0.00 0.00 2.97
4889 4963 5.808366 AAGCCGATGTCTCCTATTTGATA 57.192 39.130 0.00 0.00 0.00 2.15
4927 5001 6.098017 CGAAGCTATGCAGAAGATGATATCA 58.902 40.000 8.10 8.10 0.00 2.15
5007 5083 7.987750 TGCTTTTCAGTTATACCATTACACA 57.012 32.000 0.00 0.00 0.00 3.72
5089 5165 8.940952 ACTTAAGAGATCAGTGTCAAAATTAGC 58.059 33.333 10.09 0.00 0.00 3.09
5178 5254 2.627515 ACCATCGAATCCACCAGATG 57.372 50.000 0.00 0.00 39.92 2.90
5191 5267 7.705325 ACTTACTGTAAATACTTGCTACCATCG 59.295 37.037 1.46 0.00 0.00 3.84
5286 5363 2.362077 GAGCAAAAAGTCACATGGGTGT 59.638 45.455 0.00 0.00 45.45 4.16
5295 5372 7.750229 ATAGAAACTGATGAGCAAAAAGTCA 57.250 32.000 0.00 0.00 0.00 3.41
5445 5522 5.862845 AGTGGTCATATTAGCATCCAAGAG 58.137 41.667 0.00 0.00 0.00 2.85
5479 5556 9.460019 TGTCATTTTATCATTCAAGTGGTCATA 57.540 29.630 0.00 0.00 0.00 2.15
5486 5563 9.793252 GCTTACATGTCATTTTATCATTCAAGT 57.207 29.630 0.00 0.00 0.00 3.16
5487 5564 9.791820 TGCTTACATGTCATTTTATCATTCAAG 57.208 29.630 0.00 0.00 0.00 3.02
5492 5569 9.961265 CTCATTGCTTACATGTCATTTTATCAT 57.039 29.630 0.00 0.00 0.00 2.45
5493 5570 9.176460 TCTCATTGCTTACATGTCATTTTATCA 57.824 29.630 0.00 0.00 0.00 2.15
5494 5571 9.661187 CTCTCATTGCTTACATGTCATTTTATC 57.339 33.333 0.00 0.00 0.00 1.75
5495 5572 8.627403 CCTCTCATTGCTTACATGTCATTTTAT 58.373 33.333 0.00 0.00 0.00 1.40
5496 5573 7.828717 TCCTCTCATTGCTTACATGTCATTTTA 59.171 33.333 0.00 0.00 0.00 1.52
5497 5574 6.660521 TCCTCTCATTGCTTACATGTCATTTT 59.339 34.615 0.00 0.00 0.00 1.82
5498 5575 6.182627 TCCTCTCATTGCTTACATGTCATTT 58.817 36.000 0.00 0.00 0.00 2.32
5499 5576 5.748402 TCCTCTCATTGCTTACATGTCATT 58.252 37.500 0.00 0.00 0.00 2.57
5500 5577 5.363562 TCCTCTCATTGCTTACATGTCAT 57.636 39.130 0.00 0.00 0.00 3.06
5501 5578 4.824479 TCCTCTCATTGCTTACATGTCA 57.176 40.909 0.00 0.00 0.00 3.58
5502 5579 4.514441 CCATCCTCTCATTGCTTACATGTC 59.486 45.833 0.00 0.00 0.00 3.06
5503 5580 4.080129 ACCATCCTCTCATTGCTTACATGT 60.080 41.667 2.69 2.69 0.00 3.21
5504 5581 4.275196 CACCATCCTCTCATTGCTTACATG 59.725 45.833 0.00 0.00 0.00 3.21
5610 6012 4.148079 TGTGCTTCCACCATGTCATTTTA 58.852 39.130 0.00 0.00 41.35 1.52
5611 6013 2.964464 TGTGCTTCCACCATGTCATTTT 59.036 40.909 0.00 0.00 41.35 1.82
5612 6014 2.596346 TGTGCTTCCACCATGTCATTT 58.404 42.857 0.00 0.00 41.35 2.32
5613 6015 2.291209 TGTGCTTCCACCATGTCATT 57.709 45.000 0.00 0.00 41.35 2.57
5614 6016 2.097036 CATGTGCTTCCACCATGTCAT 58.903 47.619 0.00 0.00 41.35 3.06
5615 6017 1.073603 TCATGTGCTTCCACCATGTCA 59.926 47.619 0.00 0.00 41.35 3.58
5616 6018 1.825090 TCATGTGCTTCCACCATGTC 58.175 50.000 0.00 0.00 41.35 3.06
5617 6019 2.519771 ATCATGTGCTTCCACCATGT 57.480 45.000 0.00 0.00 41.35 3.21
5719 6121 1.203994 CTCCTTGCTTTCATGCTTGGG 59.796 52.381 0.00 0.00 0.00 4.12
5746 6148 0.538584 CCAGGACAGCTACAGCATGA 59.461 55.000 3.70 0.00 45.16 3.07
5755 6157 0.907230 GGACTTCTCCCAGGACAGCT 60.907 60.000 0.00 0.00 0.00 4.24
5838 6245 7.530426 AACTCAGTTTCTTGCCAAGATTAAT 57.470 32.000 8.18 0.00 37.38 1.40
5856 6263 7.878127 TCTGAAACAATAAACCTCCTAACTCAG 59.122 37.037 0.00 0.00 0.00 3.35
5888 6295 3.256704 GTCCCCATCATACCCTCCAATA 58.743 50.000 0.00 0.00 0.00 1.90
6091 6498 4.584327 ATTTGTGAGGGCAACAGTTAAC 57.416 40.909 0.00 0.00 39.74 2.01
6119 6526 5.772169 AGGAAGAAATTGTCCTTGAAAGAGG 59.228 40.000 0.72 0.00 41.73 3.69
6347 6754 4.401925 CTCAAAAGGAAGGGTGAGACAAT 58.598 43.478 0.00 0.00 39.94 2.71
6363 6771 3.485394 TGCACATAACTGGAGCTCAAAA 58.515 40.909 17.19 0.00 0.00 2.44
6382 6790 1.660333 CGAGTTTCTGGTTTTCGCTGC 60.660 52.381 0.00 0.00 0.00 5.25
6469 6877 8.316946 AGAATTCAGAACATTCTACATGTCTCA 58.683 33.333 0.00 0.00 38.89 3.27
6520 6948 5.554437 TCCTAACGGTATTGCATTCCATA 57.446 39.130 0.00 0.00 0.00 2.74
6606 7034 6.959639 AGGTTTCAGAAAGATTGCAAGTAA 57.040 33.333 4.94 0.00 0.00 2.24
6615 7043 5.694995 TCTGAACCAAGGTTTCAGAAAGAT 58.305 37.500 21.24 0.00 38.27 2.40
6632 7060 5.245075 AGCTTGCCTCTACCTATATCTGAAC 59.755 44.000 0.00 0.00 0.00 3.18
6665 7093 9.309516 TGTCTAATATAAACACTTTTAGGCGAG 57.690 33.333 0.00 0.00 30.58 5.03
6699 7127 2.886081 TGGCAAAATCACACACAACAC 58.114 42.857 0.00 0.00 0.00 3.32
6704 7132 2.669434 GCATCATGGCAAAATCACACAC 59.331 45.455 0.00 0.00 0.00 3.82
6719 7147 8.739039 TGTAGCTTTACAAAAACTATGCATCAT 58.261 29.630 0.19 0.00 0.00 2.45
6724 7152 6.305638 GCAGTGTAGCTTTACAAAAACTATGC 59.694 38.462 0.00 0.00 0.00 3.14
6770 7198 4.778213 AGAACATTAGCAGGCTGGATAA 57.222 40.909 17.64 6.86 0.00 1.75
6779 7207 2.229543 TGCAAGGCAAGAACATTAGCAG 59.770 45.455 0.00 0.00 34.76 4.24
6795 7223 0.806868 ACGCAAGGATGTGATGCAAG 59.193 50.000 0.00 0.00 46.39 4.01
6819 7247 6.129009 CGATTTGAAAGGAAAAGCATTCACTG 60.129 38.462 4.87 0.00 31.96 3.66
6833 7262 9.367444 AGTGAGTATTTACTACGATTTGAAAGG 57.633 33.333 0.00 0.00 36.50 3.11
6872 7320 6.724441 CCAGGGGTCCTTTAATTAGTCTTTTT 59.276 38.462 0.00 0.00 0.00 1.94
6873 7321 6.253758 CCAGGGGTCCTTTAATTAGTCTTTT 58.746 40.000 0.00 0.00 0.00 2.27
6874 7322 5.810034 GCCAGGGGTCCTTTAATTAGTCTTT 60.810 44.000 0.00 0.00 0.00 2.52
6875 7323 4.325109 GCCAGGGGTCCTTTAATTAGTCTT 60.325 45.833 0.00 0.00 0.00 3.01
6876 7324 3.202373 GCCAGGGGTCCTTTAATTAGTCT 59.798 47.826 0.00 0.00 0.00 3.24
6877 7325 3.202373 AGCCAGGGGTCCTTTAATTAGTC 59.798 47.826 0.00 0.00 0.00 2.59
6878 7326 3.198827 AGCCAGGGGTCCTTTAATTAGT 58.801 45.455 0.00 0.00 0.00 2.24
6879 7327 3.202151 TGAGCCAGGGGTCCTTTAATTAG 59.798 47.826 14.45 0.00 41.45 1.73
6880 7328 3.194620 TGAGCCAGGGGTCCTTTAATTA 58.805 45.455 14.45 0.00 41.45 1.40
6881 7329 2.000048 TGAGCCAGGGGTCCTTTAATT 59.000 47.619 14.45 0.00 41.45 1.40
6882 7330 1.681229 TGAGCCAGGGGTCCTTTAAT 58.319 50.000 14.45 0.00 41.45 1.40
6883 7331 1.564348 GATGAGCCAGGGGTCCTTTAA 59.436 52.381 14.45 0.00 41.45 1.52
6884 7332 1.213296 GATGAGCCAGGGGTCCTTTA 58.787 55.000 14.45 0.00 41.45 1.85
6885 7333 0.846427 TGATGAGCCAGGGGTCCTTT 60.846 55.000 14.45 0.30 41.45 3.11
6886 7334 0.625683 ATGATGAGCCAGGGGTCCTT 60.626 55.000 14.45 2.72 41.45 3.36
6887 7335 1.005289 ATGATGAGCCAGGGGTCCT 59.995 57.895 14.45 5.06 41.45 3.85
6888 7336 1.150081 CATGATGAGCCAGGGGTCC 59.850 63.158 14.45 1.41 41.45 4.46
6938 7391 2.288640 CCCCGATAAAGTGATACGTCCC 60.289 54.545 0.00 0.00 0.00 4.46
7062 7525 9.515020 GTCAAAATCTATCAACACAAGACAAAA 57.485 29.630 0.00 0.00 0.00 2.44
7066 7529 7.117241 TCGTCAAAATCTATCAACACAAGAC 57.883 36.000 0.00 0.00 0.00 3.01
7067 7530 7.722795 TTCGTCAAAATCTATCAACACAAGA 57.277 32.000 0.00 0.00 0.00 3.02
7068 7531 8.955061 AATTCGTCAAAATCTATCAACACAAG 57.045 30.769 0.00 0.00 0.00 3.16
7069 7532 9.743057 AAAATTCGTCAAAATCTATCAACACAA 57.257 25.926 0.00 0.00 0.00 3.33
7070 7533 9.743057 AAAAATTCGTCAAAATCTATCAACACA 57.257 25.926 0.00 0.00 0.00 3.72
7075 7538 9.220635 CGCATAAAAATTCGTCAAAATCTATCA 57.779 29.630 0.00 0.00 0.00 2.15
7076 7539 9.433317 TCGCATAAAAATTCGTCAAAATCTATC 57.567 29.630 0.00 0.00 0.00 2.08
7077 7540 9.950680 ATCGCATAAAAATTCGTCAAAATCTAT 57.049 25.926 0.00 0.00 0.00 1.98
7078 7541 9.781834 AATCGCATAAAAATTCGTCAAAATCTA 57.218 25.926 0.00 0.00 0.00 1.98
7079 7542 8.687824 AATCGCATAAAAATTCGTCAAAATCT 57.312 26.923 0.00 0.00 0.00 2.40
7082 7545 9.347934 ACATAATCGCATAAAAATTCGTCAAAA 57.652 25.926 0.00 0.00 0.00 2.44
7083 7546 8.903570 ACATAATCGCATAAAAATTCGTCAAA 57.096 26.923 0.00 0.00 0.00 2.69
7084 7547 9.428363 GTACATAATCGCATAAAAATTCGTCAA 57.572 29.630 0.00 0.00 0.00 3.18
7085 7548 8.822855 AGTACATAATCGCATAAAAATTCGTCA 58.177 29.630 0.00 0.00 0.00 4.35
7086 7549 9.646336 AAGTACATAATCGCATAAAAATTCGTC 57.354 29.630 0.00 0.00 0.00 4.20
7087 7550 9.646336 GAAGTACATAATCGCATAAAAATTCGT 57.354 29.630 0.00 0.00 0.00 3.85
7088 7551 9.864034 AGAAGTACATAATCGCATAAAAATTCG 57.136 29.630 0.00 0.00 0.00 3.34
7092 7555 9.157104 TGTGAGAAGTACATAATCGCATAAAAA 57.843 29.630 0.00 0.00 0.00 1.94
7093 7556 8.710835 TGTGAGAAGTACATAATCGCATAAAA 57.289 30.769 0.00 0.00 0.00 1.52
7094 7557 8.887036 ATGTGAGAAGTACATAATCGCATAAA 57.113 30.769 12.06 0.00 38.85 1.40
7095 7558 8.887036 AATGTGAGAAGTACATAATCGCATAA 57.113 30.769 13.35 2.05 39.49 1.90
7096 7559 9.626045 CTAATGTGAGAAGTACATAATCGCATA 57.374 33.333 13.35 5.66 39.49 3.14
7097 7560 8.144478 ACTAATGTGAGAAGTACATAATCGCAT 58.856 33.333 9.34 9.34 41.51 4.73
7098 7561 7.435192 CACTAATGTGAGAAGTACATAATCGCA 59.565 37.037 0.00 0.99 46.55 5.10
7099 7562 7.435488 ACACTAATGTGAGAAGTACATAATCGC 59.565 37.037 3.03 0.00 46.55 4.58
7100 7563 8.858003 ACACTAATGTGAGAAGTACATAATCG 57.142 34.615 3.03 0.00 46.55 3.34
7122 7585 6.114221 TGCTCTAACAAAAAGTGTACACAC 57.886 37.500 27.06 4.51 46.77 3.82
7123 7586 6.373216 AGTTGCTCTAACAAAAAGTGTACACA 59.627 34.615 27.06 3.57 40.60 3.72
7124 7587 6.782150 AGTTGCTCTAACAAAAAGTGTACAC 58.218 36.000 18.56 18.56 40.60 2.90
7125 7588 6.995511 AGTTGCTCTAACAAAAAGTGTACA 57.004 33.333 0.00 0.00 40.60 2.90
7126 7589 9.777575 TTAAAGTTGCTCTAACAAAAAGTGTAC 57.222 29.630 0.00 0.00 40.60 2.90
7128 7591 9.135843 GTTTAAAGTTGCTCTAACAAAAAGTGT 57.864 29.630 0.00 0.00 44.64 3.55
7129 7592 8.311120 CGTTTAAAGTTGCTCTAACAAAAAGTG 58.689 33.333 0.00 0.00 41.88 3.16
7130 7593 7.486870 CCGTTTAAAGTTGCTCTAACAAAAAGT 59.513 33.333 0.00 0.00 41.88 2.66
7131 7594 7.043656 CCCGTTTAAAGTTGCTCTAACAAAAAG 60.044 37.037 0.00 0.00 41.88 2.27
7132 7595 6.752815 CCCGTTTAAAGTTGCTCTAACAAAAA 59.247 34.615 0.00 0.00 41.88 1.94
7133 7596 6.267070 CCCGTTTAAAGTTGCTCTAACAAAA 58.733 36.000 0.00 0.00 41.88 2.44
7134 7597 5.733937 GCCCGTTTAAAGTTGCTCTAACAAA 60.734 40.000 0.00 0.00 41.88 2.83
7135 7598 4.261280 GCCCGTTTAAAGTTGCTCTAACAA 60.261 41.667 0.00 0.00 41.88 2.83
7136 7599 3.251487 GCCCGTTTAAAGTTGCTCTAACA 59.749 43.478 0.00 0.00 41.88 2.41
7137 7600 3.666111 CGCCCGTTTAAAGTTGCTCTAAC 60.666 47.826 0.00 0.00 39.65 2.34
7138 7601 2.481185 CGCCCGTTTAAAGTTGCTCTAA 59.519 45.455 0.00 0.00 0.00 2.10
7139 7602 2.070783 CGCCCGTTTAAAGTTGCTCTA 58.929 47.619 0.00 0.00 0.00 2.43
7140 7603 0.872388 CGCCCGTTTAAAGTTGCTCT 59.128 50.000 0.00 0.00 0.00 4.09
7141 7604 0.869730 TCGCCCGTTTAAAGTTGCTC 59.130 50.000 0.00 0.00 0.00 4.26
7142 7605 1.467342 GATCGCCCGTTTAAAGTTGCT 59.533 47.619 0.00 0.00 0.00 3.91
7143 7606 1.467342 AGATCGCCCGTTTAAAGTTGC 59.533 47.619 0.00 0.00 0.00 4.17
7144 7607 5.479716 AATAGATCGCCCGTTTAAAGTTG 57.520 39.130 0.00 0.00 0.00 3.16
7145 7608 5.220529 CGAAATAGATCGCCCGTTTAAAGTT 60.221 40.000 0.00 0.00 35.85 2.66
7146 7609 4.269363 CGAAATAGATCGCCCGTTTAAAGT 59.731 41.667 0.00 0.00 35.85 2.66
7147 7610 4.269363 ACGAAATAGATCGCCCGTTTAAAG 59.731 41.667 0.00 0.00 46.51 1.85
7148 7611 4.183101 ACGAAATAGATCGCCCGTTTAAA 58.817 39.130 0.00 0.00 46.51 1.52
7149 7612 3.784338 ACGAAATAGATCGCCCGTTTAA 58.216 40.909 0.00 0.00 46.51 1.52
7150 7613 3.374745 GACGAAATAGATCGCCCGTTTA 58.625 45.455 0.00 0.00 46.51 2.01
7151 7614 2.199236 GACGAAATAGATCGCCCGTTT 58.801 47.619 0.00 0.00 46.51 3.60
7152 7615 1.537562 GGACGAAATAGATCGCCCGTT 60.538 52.381 0.00 0.00 46.51 4.44
7153 7616 0.031721 GGACGAAATAGATCGCCCGT 59.968 55.000 0.00 0.00 46.51 5.28
7154 7617 2.810486 GGACGAAATAGATCGCCCG 58.190 57.895 0.00 0.00 46.51 6.13
7155 7618 1.282930 GCGGACGAAATAGATCGCCC 61.283 60.000 0.00 0.00 46.51 6.13
7156 7619 1.606350 CGCGGACGAAATAGATCGCC 61.606 60.000 0.00 0.00 46.51 5.54
7157 7620 1.606350 CCGCGGACGAAATAGATCGC 61.606 60.000 24.07 0.00 46.51 4.58
7159 7622 1.282930 GGCCGCGGACGAAATAGATC 61.283 60.000 33.48 5.78 43.93 2.75
7160 7623 1.300697 GGCCGCGGACGAAATAGAT 60.301 57.895 33.48 0.00 43.93 1.98
7161 7624 2.105528 GGCCGCGGACGAAATAGA 59.894 61.111 33.48 0.00 43.93 1.98
7174 7637 3.719144 GACCCAAACGAACGGCCG 61.719 66.667 26.86 26.86 0.00 6.13
7175 7638 3.719144 CGACCCAAACGAACGGCC 61.719 66.667 0.00 0.00 0.00 6.13
7176 7639 3.719144 CCGACCCAAACGAACGGC 61.719 66.667 0.00 0.00 37.32 5.68
7177 7640 3.719144 GCCGACCCAAACGAACGG 61.719 66.667 0.00 0.00 45.26 4.44
7178 7641 4.067016 CGCCGACCCAAACGAACG 62.067 66.667 0.00 0.00 0.00 3.95
7179 7642 4.379143 GCGCCGACCCAAACGAAC 62.379 66.667 0.00 0.00 0.00 3.95
7189 7652 3.011760 CTTTTCTGTCCGCGCCGAC 62.012 63.158 20.04 20.04 0.00 4.79
7190 7653 2.736995 CTTTTCTGTCCGCGCCGA 60.737 61.111 0.00 0.00 0.00 5.54
7191 7654 2.736995 TCTTTTCTGTCCGCGCCG 60.737 61.111 0.00 0.00 0.00 6.46
7192 7655 2.861006 GTCTTTTCTGTCCGCGCC 59.139 61.111 0.00 0.00 0.00 6.53
7193 7656 2.470286 CGTCTTTTCTGTCCGCGC 59.530 61.111 0.00 0.00 0.00 6.86
7194 7657 3.011760 GCCGTCTTTTCTGTCCGCG 62.012 63.158 0.00 0.00 0.00 6.46
7195 7658 2.677979 GGCCGTCTTTTCTGTCCGC 61.678 63.158 0.00 0.00 0.00 5.54
7196 7659 2.033194 GGGCCGTCTTTTCTGTCCG 61.033 63.158 0.00 0.00 0.00 4.79
7197 7660 0.536460 TTGGGCCGTCTTTTCTGTCC 60.536 55.000 0.00 0.00 0.00 4.02
7198 7661 0.591659 GTTGGGCCGTCTTTTCTGTC 59.408 55.000 0.00 0.00 0.00 3.51
7199 7662 1.164041 CGTTGGGCCGTCTTTTCTGT 61.164 55.000 0.00 0.00 0.00 3.41
7200 7663 1.574428 CGTTGGGCCGTCTTTTCTG 59.426 57.895 0.00 0.00 0.00 3.02
7201 7664 2.258726 GCGTTGGGCCGTCTTTTCT 61.259 57.895 0.00 0.00 34.80 2.52
7202 7665 1.862602 ATGCGTTGGGCCGTCTTTTC 61.863 55.000 0.00 0.00 42.61 2.29
7203 7666 1.862602 GATGCGTTGGGCCGTCTTTT 61.863 55.000 0.00 0.00 42.61 2.27
7204 7667 2.282180 ATGCGTTGGGCCGTCTTT 60.282 55.556 0.00 0.00 42.61 2.52
7205 7668 2.746277 GATGCGTTGGGCCGTCTT 60.746 61.111 0.00 0.00 42.61 3.01
7212 7675 1.312371 ATTTGGGTCGATGCGTTGGG 61.312 55.000 0.00 0.00 0.00 4.12
7213 7676 0.179166 CATTTGGGTCGATGCGTTGG 60.179 55.000 0.00 0.00 0.00 3.77
7214 7677 0.179166 CCATTTGGGTCGATGCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
7215 7678 0.322098 TCCATTTGGGTCGATGCGTT 60.322 50.000 0.00 0.00 38.11 4.84
7216 7679 1.024579 GTCCATTTGGGTCGATGCGT 61.025 55.000 0.00 0.00 38.11 5.24
7217 7680 1.721487 GTCCATTTGGGTCGATGCG 59.279 57.895 0.00 0.00 38.11 4.73
7223 7686 4.160635 CGCGCGTCCATTTGGGTC 62.161 66.667 24.19 0.00 38.11 4.46
7225 7688 3.262142 AAACGCGCGTCCATTTGGG 62.262 57.895 37.77 2.38 35.41 4.12
7226 7689 2.080062 CAAACGCGCGTCCATTTGG 61.080 57.895 37.77 14.43 0.00 3.28
7227 7690 3.435915 CAAACGCGCGTCCATTTG 58.564 55.556 37.77 30.36 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.