Multiple sequence alignment - TraesCS1A01G110200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G110200 chr1A 100.000 6327 0 0 1 6327 109572856 109579182 0.000000e+00 11684.0
1 TraesCS1A01G110200 chr1A 82.609 276 30 6 2524 2790 109575089 109575355 1.770000e-55 228.0
2 TraesCS1A01G110200 chr1A 96.341 82 2 1 6098 6178 109578871 109578952 3.980000e-27 134.0
3 TraesCS1A01G110200 chr1A 96.341 82 2 1 6016 6097 109578953 109579033 3.980000e-27 134.0
4 TraesCS1A01G110200 chr1D 96.752 3325 70 14 2425 5739 107173676 107176972 0.000000e+00 5507.0
5 TraesCS1A01G110200 chr1D 95.991 1821 48 10 617 2426 107171787 107173593 0.000000e+00 2935.0
6 TraesCS1A01G110200 chr1D 92.000 175 12 2 5917 6091 107176950 107177122 1.760000e-60 244.0
7 TraesCS1A01G110200 chr1D 85.492 193 19 6 2524 2707 107173401 107173593 6.470000e-45 193.0
8 TraesCS1A01G110200 chr1D 96.000 75 3 0 6098 6172 107177048 107177122 8.610000e-24 122.0
9 TraesCS1A01G110200 chr1D 96.875 64 2 0 4289 4352 48193815 48193878 2.410000e-19 108.0
10 TraesCS1A01G110200 chr1D 89.130 46 5 0 6280 6325 107177244 107177289 2.460000e-04 58.4
11 TraesCS1A01G110200 chr1B 92.380 1916 82 21 2324 4192 159635575 159633677 0.000000e+00 2671.0
12 TraesCS1A01G110200 chr1B 97.404 1040 26 1 4701 5739 159633019 159631980 0.000000e+00 1770.0
13 TraesCS1A01G110200 chr1B 97.386 1033 25 2 787 1818 159638363 159637332 0.000000e+00 1757.0
14 TraesCS1A01G110200 chr1B 93.763 481 23 5 1833 2307 159636105 159635626 0.000000e+00 715.0
15 TraesCS1A01G110200 chr1B 92.416 356 20 2 4348 4702 159633419 159633070 9.470000e-138 501.0
16 TraesCS1A01G110200 chr1B 89.697 165 14 2 5923 6087 159631996 159631835 2.310000e-49 207.0
17 TraesCS1A01G110200 chr1B 98.305 118 1 1 4175 4291 159633537 159633420 8.310000e-49 206.0
18 TraesCS1A01G110200 chr1B 86.486 148 13 2 617 763 159638501 159638360 8.490000e-34 156.0
19 TraesCS1A01G110200 chr1B 92.958 71 5 0 6098 6168 159631905 159631835 3.120000e-18 104.0
20 TraesCS1A01G110200 chr1B 90.385 52 5 0 6276 6327 159631737 159631686 1.140000e-07 69.4
21 TraesCS1A01G110200 chr1B 91.837 49 3 1 6278 6325 159631662 159631614 4.090000e-07 67.6
22 TraesCS1A01G110200 chr4D 92.208 616 48 0 1 616 133488270 133487655 0.000000e+00 872.0
23 TraesCS1A01G110200 chr4D 90.391 614 59 0 4 617 213645270 213644657 0.000000e+00 808.0
24 TraesCS1A01G110200 chr4D 89.694 621 59 5 2 619 364159304 364159922 0.000000e+00 787.0
25 TraesCS1A01G110200 chr4D 88.636 616 68 2 2 616 371069585 371070199 0.000000e+00 749.0
26 TraesCS1A01G110200 chr4D 88.274 614 70 2 4 617 371109493 371110104 0.000000e+00 734.0
27 TraesCS1A01G110200 chr2D 91.234 616 51 2 1 614 509126280 509126894 0.000000e+00 835.0
28 TraesCS1A01G110200 chr2D 95.238 63 2 1 4290 4352 106264517 106264578 1.450000e-16 99.0
29 TraesCS1A01G110200 chr2D 93.939 66 1 1 4290 4352 70029047 70029112 5.220000e-16 97.1
30 TraesCS1A01G110200 chr2B 91.011 623 50 2 1 623 543405625 543405009 0.000000e+00 835.0
31 TraesCS1A01G110200 chr3D 89.499 619 58 6 1 616 81124805 81125419 0.000000e+00 776.0
32 TraesCS1A01G110200 chr2A 89.379 612 65 0 5 616 487238472 487237861 0.000000e+00 771.0
33 TraesCS1A01G110200 chr2A 92.647 204 11 4 5739 5940 734626289 734626088 2.230000e-74 291.0
34 TraesCS1A01G110200 chr7B 96.703 182 6 0 5739 5920 697097750 697097569 2.870000e-78 303.0
35 TraesCS1A01G110200 chr7B 93.846 195 10 1 5739 5933 252794449 252794257 6.200000e-75 292.0
36 TraesCS1A01G110200 chr7B 94.030 67 2 2 4286 4351 53250573 53250638 4.040000e-17 100.0
37 TraesCS1A01G110200 chr7B 100.000 30 0 0 3604 3633 178392283 178392254 8.860000e-04 56.5
38 TraesCS1A01G110200 chr4B 94.330 194 10 1 5739 5932 344467276 344467468 4.800000e-76 296.0
39 TraesCS1A01G110200 chr3B 94.764 191 8 2 5739 5929 595691974 595692162 4.800000e-76 296.0
40 TraesCS1A01G110200 chr3B 94.271 192 10 1 5732 5922 488873798 488873989 6.200000e-75 292.0
41 TraesCS1A01G110200 chr4A 95.187 187 7 2 5739 5924 673447850 673448035 1.720000e-75 294.0
42 TraesCS1A01G110200 chr4A 94.241 191 11 0 5730 5920 585399378 585399568 6.200000e-75 292.0
43 TraesCS1A01G110200 chr3A 92.462 199 13 2 5739 5936 419540107 419540304 3.730000e-72 283.0
44 TraesCS1A01G110200 chr3A 90.141 71 6 1 4281 4351 671630860 671630791 2.430000e-14 91.6
45 TraesCS1A01G110200 chrUn 91.781 73 2 2 4282 4351 49143749 49143820 1.450000e-16 99.0
46 TraesCS1A01G110200 chr6A 95.238 63 2 1 4290 4351 594732738 594732800 1.450000e-16 99.0
47 TraesCS1A01G110200 chr5A 95.161 62 3 0 4290 4351 342045712 342045651 1.450000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G110200 chr1A 109572856 109579182 6326 False 11684.000000 11684 100.000000 1 6327 1 chr1A.!!$F1 6326
1 TraesCS1A01G110200 chr1D 107171787 107177289 5502 False 1509.900000 5507 92.560833 617 6325 6 chr1D.!!$F2 5708
2 TraesCS1A01G110200 chr1B 159631614 159638501 6887 True 747.636364 2671 93.001545 617 6327 11 chr1B.!!$R1 5710
3 TraesCS1A01G110200 chr4D 133487655 133488270 615 True 872.000000 872 92.208000 1 616 1 chr4D.!!$R1 615
4 TraesCS1A01G110200 chr4D 213644657 213645270 613 True 808.000000 808 90.391000 4 617 1 chr4D.!!$R2 613
5 TraesCS1A01G110200 chr4D 364159304 364159922 618 False 787.000000 787 89.694000 2 619 1 chr4D.!!$F1 617
6 TraesCS1A01G110200 chr4D 371069585 371070199 614 False 749.000000 749 88.636000 2 616 1 chr4D.!!$F2 614
7 TraesCS1A01G110200 chr4D 371109493 371110104 611 False 734.000000 734 88.274000 4 617 1 chr4D.!!$F3 613
8 TraesCS1A01G110200 chr2D 509126280 509126894 614 False 835.000000 835 91.234000 1 614 1 chr2D.!!$F3 613
9 TraesCS1A01G110200 chr2B 543405009 543405625 616 True 835.000000 835 91.011000 1 623 1 chr2B.!!$R1 622
10 TraesCS1A01G110200 chr3D 81124805 81125419 614 False 776.000000 776 89.499000 1 616 1 chr3D.!!$F1 615
11 TraesCS1A01G110200 chr2A 487237861 487238472 611 True 771.000000 771 89.379000 5 616 1 chr2A.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
190 191 0.732571 CGGCAATACAATCGCTTGGT 59.267 50.000 3.77 0.0 36.64 3.67 F
259 261 1.071814 GGTCGGTACAACAGGCCAA 59.928 57.895 5.01 0.0 0.00 4.52 F
1562 1570 0.804544 CGCAACGACCGGTATGATGT 60.805 55.000 7.34 0.0 0.00 3.06 F
2407 3678 1.028868 GGCTTAGGTGAGGCAAGCAG 61.029 60.000 7.73 0.0 45.13 4.24 F
2665 4057 0.611062 TAGTCGTGCTAGTGCCAGGT 60.611 55.000 0.00 0.0 38.71 4.00 F
3163 4555 2.092103 GCACCTACCCATAAACCCATGA 60.092 50.000 0.00 0.0 0.00 3.07 F
3756 5153 2.592102 AATGCCTGCTTTTCTCCTCA 57.408 45.000 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1151 1159 0.463295 GCTAGGTTCGGGGTTTAGGC 60.463 60.00 0.00 0.0 0.00 3.93 R
1730 1748 0.915364 AGAAGTCCCTTGATGCCCTC 59.085 55.00 0.00 0.0 0.00 4.30 R
2665 4057 0.038251 CTGTCTCACCTAAGCGCACA 60.038 55.00 11.47 0.0 0.00 4.57 R
3807 5206 1.644509 ACACAGAGCACATAGGTCCA 58.355 50.00 0.00 0.0 45.87 4.02 R
3891 5291 3.313803 TGACAAAATGTTTAGCGTCTGCA 59.686 39.13 0.00 0.0 46.23 4.41 R
4849 6470 0.598065 GCTTCCTGTTGAATTGCCGT 59.402 50.00 0.00 0.0 31.06 5.68 R
5732 7354 0.541764 CCAGGCTGCCCTTTAACCAA 60.542 55.00 16.57 0.0 40.33 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.380084 GGTATTCAGAGCACAACCGA 57.620 50.000 0.00 0.00 0.00 4.69
135 136 2.198426 AAAGCACCACACCAGGGG 59.802 61.111 0.00 0.00 34.24 4.79
136 137 2.391130 AAAGCACCACACCAGGGGA 61.391 57.895 0.00 0.00 32.15 4.81
182 183 2.518349 CCGGGGCGGCAATACAAT 60.518 61.111 12.47 0.00 41.17 2.71
190 191 0.732571 CGGCAATACAATCGCTTGGT 59.267 50.000 3.77 0.00 36.64 3.67
196 197 5.266242 GCAATACAATCGCTTGGTAAGAAG 58.734 41.667 3.77 0.00 36.64 2.85
259 261 1.071814 GGTCGGTACAACAGGCCAA 59.928 57.895 5.01 0.00 0.00 4.52
327 332 3.327757 ACTGCACCAGGATGAACTAAAGA 59.672 43.478 0.00 0.00 39.69 2.52
414 419 2.264480 CCACGCCTTCCGATGTGA 59.736 61.111 0.00 0.00 41.02 3.58
463 468 3.469739 ACGACCAAGGAAATAAACACGT 58.530 40.909 0.00 0.00 0.00 4.49
499 504 9.880822 CGTCTTCGATCTTTTCCTTCGAGAGAA 62.881 44.444 0.00 0.00 42.21 2.87
535 540 2.417379 GCGAACCTGAGCATAGAGAACA 60.417 50.000 0.00 0.00 0.00 3.18
553 558 8.316640 AGAGAACATGAAGAACTTAACACATC 57.683 34.615 0.00 0.00 0.00 3.06
585 590 4.285517 ACAAGGAGAGTTGTCATCATCACT 59.714 41.667 0.00 0.00 35.71 3.41
610 615 7.555087 TCAAAACACAAAGATGGAAAATGTCT 58.445 30.769 0.00 0.00 0.00 3.41
621 626 9.574516 AAGATGGAAAATGTCTTAACAGTACTT 57.425 29.630 0.00 0.00 39.20 2.24
633 638 8.672815 GTCTTAACAGTACTTCTATACGGAACT 58.327 37.037 0.00 0.00 0.00 3.01
731 738 4.783764 ATTGAAATTTGACGAGGGTTCC 57.216 40.909 0.00 0.00 0.00 3.62
810 817 7.069085 CCCCTTATACGGAGATTCGGATATTTA 59.931 40.741 0.00 0.00 36.06 1.40
821 828 3.248024 TCGGATATTTACAGGGAGCCAT 58.752 45.455 0.00 0.00 0.00 4.40
856 863 2.978156 TTCTTGCACATCTCCCCTTT 57.022 45.000 0.00 0.00 0.00 3.11
870 877 1.086696 CCCTTTGTTCGCGTCATCAT 58.913 50.000 5.77 0.00 0.00 2.45
1176 1184 0.979709 ACCCCGAACCTAGCCCTAAC 60.980 60.000 0.00 0.00 0.00 2.34
1562 1570 0.804544 CGCAACGACCGGTATGATGT 60.805 55.000 7.34 0.00 0.00 3.06
1619 1636 2.903350 TGCTGCAGTGCCAGTGTG 60.903 61.111 16.64 0.00 35.28 3.82
1730 1748 9.581289 CCTGTATAGACAAGGGGATATATCTAG 57.419 40.741 12.42 1.79 34.35 2.43
1831 1849 4.207635 CGTGTGAACTTGTTATGTACGTGT 59.792 41.667 0.00 0.00 0.00 4.49
1936 3169 4.253685 GGAATTTTTGGGCCTTCTTTAGC 58.746 43.478 4.53 0.00 0.00 3.09
1973 3206 3.638160 CTGCTGGAGAAAGAGATCTAGCT 59.362 47.826 11.08 0.00 46.69 3.32
1976 3209 4.281688 GCTGGAGAAAGAGATCTAGCTCAT 59.718 45.833 0.00 0.00 44.14 2.90
2021 3254 6.268617 ACTCTGCATGCTCCATCTTAGTAATA 59.731 38.462 20.33 0.00 0.00 0.98
2185 3421 7.165812 CAGTTTTTGTGCATGAGTTTACTGTAC 59.834 37.037 0.00 0.00 0.00 2.90
2225 3461 1.842562 CTGGTCACATGGAGGAGGATT 59.157 52.381 0.00 0.00 0.00 3.01
2316 3553 9.349713 TCTATGGTTACCATGGCTAAATAAAAG 57.650 33.333 25.61 10.93 44.84 2.27
2376 3647 3.491104 GCTTAATCGTGCTAGTGCTAGGT 60.491 47.826 8.16 0.00 40.48 3.08
2407 3678 1.028868 GGCTTAGGTGAGGCAAGCAG 61.029 60.000 7.73 0.00 45.13 4.24
2493 3857 7.223582 ACATCTGAAGACGCATCTAAATACAAG 59.776 37.037 0.00 0.00 33.57 3.16
2568 3959 6.723515 TGGAAAGGAAATCACATCCATGTTTA 59.276 34.615 0.00 0.00 39.39 2.01
2642 4034 3.379372 TGCTTGAAATCAGAATGCCTAGC 59.621 43.478 0.00 0.00 34.76 3.42
2665 4057 0.611062 TAGTCGTGCTAGTGCCAGGT 60.611 55.000 0.00 0.00 38.71 4.00
2715 4107 6.659668 AGGAAGAGGCAAAACTAGGAATTAAC 59.340 38.462 0.00 0.00 0.00 2.01
2720 4112 4.412207 GCAAAACTAGGAATTAACGCCTG 58.588 43.478 7.95 2.28 35.73 4.85
2766 4158 7.339721 TGGTTAGTATGGTGTCAACTTTTGAAA 59.660 33.333 0.00 0.00 42.15 2.69
2872 4264 9.768662 AGAATAATTCTGTTTGCTTTTGTGAAT 57.231 25.926 0.00 0.00 38.91 2.57
2951 4343 6.125029 ACCATGTATTTCCTCCAGAGATTTG 58.875 40.000 0.00 0.00 0.00 2.32
3163 4555 2.092103 GCACCTACCCATAAACCCATGA 60.092 50.000 0.00 0.00 0.00 3.07
3430 4823 6.128715 CGTTGTACTACTCAAGTCGTCTTCTA 60.129 42.308 5.91 0.00 39.80 2.10
3478 4872 7.228706 GGTGTTCTTACCTTGATCAAAGAAGAA 59.771 37.037 22.78 22.78 38.32 2.52
3535 4929 7.404671 AAGGGTTCGCTTTTTAATACATGAT 57.595 32.000 0.00 0.00 0.00 2.45
3564 4958 5.606348 TGGTTTTGGAAATACTTGCACTT 57.394 34.783 0.00 0.00 31.86 3.16
3751 5148 4.748277 ATTGCATAATGCCTGCTTTTCT 57.252 36.364 0.00 0.00 44.23 2.52
3756 5153 2.592102 AATGCCTGCTTTTCTCCTCA 57.408 45.000 0.00 0.00 0.00 3.86
3807 5206 6.155221 TGGTATGCAGATCTCTAAAGTTGTCT 59.845 38.462 0.00 0.00 0.00 3.41
3990 5393 2.881074 TCAGATCTTCGTAGCAACTGC 58.119 47.619 0.00 0.00 42.49 4.40
4256 5818 8.689251 TTTTGAAGTCTGAGATATGTAGAACG 57.311 34.615 0.00 0.00 0.00 3.95
4444 6012 5.008613 TCTCATTTGTTCCCTCAAAAACTCG 59.991 40.000 0.00 0.00 40.05 4.18
4522 6090 4.167319 AGCTTTGGAATTTATTGGTGGGT 58.833 39.130 0.00 0.00 0.00 4.51
4661 6229 8.198109 GCTTAGAGAAACTAGATTATGTGTGGA 58.802 37.037 0.00 0.00 32.30 4.02
4671 6239 5.978814 AGATTATGTGTGGACCTAGTTGAC 58.021 41.667 0.00 0.00 0.00 3.18
4796 6417 8.284945 TGCTGCTCTCTGTTATCATTTTATTT 57.715 30.769 0.00 0.00 0.00 1.40
5037 6658 7.148590 GCTGTTTTGATCTCTTCTTCTCTCTTC 60.149 40.741 0.00 0.00 0.00 2.87
5533 7155 7.054491 ACACACATTTTCAAAGCCTTCTAAT 57.946 32.000 0.00 0.00 0.00 1.73
5642 7264 5.221048 GGAAGTTCATGTTCCAATAATCCGG 60.221 44.000 5.01 0.00 42.79 5.14
5723 7345 3.380004 GTCATGTGGAACCTGTTGTGAAA 59.620 43.478 0.00 0.00 33.89 2.69
5724 7346 4.037923 GTCATGTGGAACCTGTTGTGAAAT 59.962 41.667 0.00 0.00 33.89 2.17
5725 7347 5.240623 GTCATGTGGAACCTGTTGTGAAATA 59.759 40.000 0.00 0.00 33.89 1.40
5726 7348 5.830457 TCATGTGGAACCTGTTGTGAAATAA 59.170 36.000 0.00 0.00 33.89 1.40
5727 7349 5.508200 TGTGGAACCTGTTGTGAAATAAC 57.492 39.130 0.00 0.00 35.32 1.89
5728 7350 4.950475 TGTGGAACCTGTTGTGAAATAACA 59.050 37.500 0.00 0.00 40.43 2.41
5729 7351 5.419155 TGTGGAACCTGTTGTGAAATAACAA 59.581 36.000 0.00 0.00 39.97 2.83
5730 7352 6.097554 TGTGGAACCTGTTGTGAAATAACAAT 59.902 34.615 0.00 0.00 39.97 2.71
5731 7353 7.364232 TGTGGAACCTGTTGTGAAATAACAATT 60.364 33.333 0.00 0.00 39.97 2.32
5743 7365 9.331282 TGTGAAATAACAATTTTGGTTAAAGGG 57.669 29.630 0.00 0.00 34.67 3.95
5744 7366 8.286800 GTGAAATAACAATTTTGGTTAAAGGGC 58.713 33.333 0.00 0.00 34.67 5.19
5745 7367 7.993183 TGAAATAACAATTTTGGTTAAAGGGCA 59.007 29.630 0.00 0.00 34.67 5.36
5746 7368 7.977789 AATAACAATTTTGGTTAAAGGGCAG 57.022 32.000 0.00 0.00 34.67 4.85
5747 7369 3.738982 ACAATTTTGGTTAAAGGGCAGC 58.261 40.909 0.00 0.00 0.00 5.25
5748 7370 3.073678 CAATTTTGGTTAAAGGGCAGCC 58.926 45.455 1.26 1.26 0.00 4.85
5749 7371 2.095604 TTTTGGTTAAAGGGCAGCCT 57.904 45.000 12.43 0.00 0.00 4.58
5750 7372 1.337118 TTTGGTTAAAGGGCAGCCTG 58.663 50.000 12.43 0.00 0.00 4.85
5751 7373 0.541764 TTGGTTAAAGGGCAGCCTGG 60.542 55.000 12.43 0.00 0.00 4.45
5752 7374 1.076727 GGTTAAAGGGCAGCCTGGT 59.923 57.895 12.43 0.00 0.00 4.00
5753 7375 1.250840 GGTTAAAGGGCAGCCTGGTG 61.251 60.000 12.43 0.00 0.00 4.17
5754 7376 1.606313 TTAAAGGGCAGCCTGGTGC 60.606 57.895 12.43 12.66 43.19 5.01
5755 7377 2.364722 TTAAAGGGCAGCCTGGTGCA 62.365 55.000 21.31 0.00 45.93 4.57
5756 7378 2.153898 TAAAGGGCAGCCTGGTGCAT 62.154 55.000 21.31 7.89 45.93 3.96
5757 7379 4.753662 AGGGCAGCCTGGTGCATG 62.754 66.667 21.31 0.00 45.93 4.06
5759 7381 2.045045 GGCAGCCTGGTGCATGTA 60.045 61.111 21.31 0.00 45.93 2.29
5760 7382 2.117156 GGCAGCCTGGTGCATGTAG 61.117 63.158 21.31 0.00 45.93 2.74
5761 7383 2.768492 GCAGCCTGGTGCATGTAGC 61.768 63.158 15.83 6.00 43.41 3.58
5762 7384 1.077930 CAGCCTGGTGCATGTAGCT 60.078 57.895 14.15 2.03 45.94 3.32
5763 7385 1.094073 CAGCCTGGTGCATGTAGCTC 61.094 60.000 14.15 3.90 45.94 4.09
5769 7391 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
5770 7392 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
5771 7393 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
5772 7394 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
5775 7397 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
5788 7410 4.778143 CGCAGGGTCCGGGAAAGG 62.778 72.222 0.00 0.00 0.00 3.11
5789 7411 4.426313 GCAGGGTCCGGGAAAGGG 62.426 72.222 0.00 0.00 0.00 3.95
5790 7412 2.933834 CAGGGTCCGGGAAAGGGT 60.934 66.667 0.00 0.00 0.00 4.34
5791 7413 2.609921 AGGGTCCGGGAAAGGGTC 60.610 66.667 0.00 0.00 0.00 4.46
5799 7421 3.479979 GGAAAGGGTCCGACCACT 58.520 61.111 19.43 10.80 41.02 4.00
5800 7422 1.759236 GGAAAGGGTCCGACCACTT 59.241 57.895 19.43 15.68 41.02 3.16
5801 7423 0.109913 GGAAAGGGTCCGACCACTTT 59.890 55.000 23.42 23.42 41.02 2.66
5802 7424 1.235724 GAAAGGGTCCGACCACTTTG 58.764 55.000 26.16 0.00 41.02 2.77
5803 7425 0.179001 AAAGGGTCCGACCACTTTGG 60.179 55.000 22.93 0.00 41.02 3.28
5804 7426 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
5805 7427 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
5815 7437 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
5816 7438 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
5817 7439 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
5818 7440 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
5819 7441 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
5820 7442 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
5821 7443 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
5822 7444 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
5823 7445 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
5824 7446 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
5825 7447 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
5826 7448 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
5827 7449 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
5828 7450 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
5829 7451 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
5830 7452 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
5831 7453 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
5832 7454 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
5833 7455 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
5834 7456 1.818674 CGCAGCCTTTCCCTACATTTT 59.181 47.619 0.00 0.00 0.00 1.82
5835 7457 2.231235 CGCAGCCTTTCCCTACATTTTT 59.769 45.455 0.00 0.00 0.00 1.94
5836 7458 3.588955 GCAGCCTTTCCCTACATTTTTG 58.411 45.455 0.00 0.00 0.00 2.44
5837 7459 3.006859 GCAGCCTTTCCCTACATTTTTGT 59.993 43.478 0.00 0.00 0.00 2.83
5838 7460 4.219725 GCAGCCTTTCCCTACATTTTTGTA 59.780 41.667 0.00 0.00 0.00 2.41
5839 7461 5.279256 GCAGCCTTTCCCTACATTTTTGTAA 60.279 40.000 0.00 0.00 0.00 2.41
5840 7462 6.389906 CAGCCTTTCCCTACATTTTTGTAAG 58.610 40.000 0.00 0.00 0.00 2.34
5841 7463 6.208599 CAGCCTTTCCCTACATTTTTGTAAGA 59.791 38.462 0.00 0.00 0.00 2.10
5842 7464 6.434340 AGCCTTTCCCTACATTTTTGTAAGAG 59.566 38.462 0.00 0.00 0.00 2.85
5843 7465 6.350194 GCCTTTCCCTACATTTTTGTAAGAGG 60.350 42.308 0.00 0.00 0.00 3.69
5844 7466 6.350194 CCTTTCCCTACATTTTTGTAAGAGGC 60.350 42.308 0.00 0.00 0.00 4.70
5845 7467 5.514500 TCCCTACATTTTTGTAAGAGGCT 57.486 39.130 0.00 0.00 0.00 4.58
5846 7468 5.253330 TCCCTACATTTTTGTAAGAGGCTG 58.747 41.667 0.00 0.00 0.00 4.85
5847 7469 5.010282 CCCTACATTTTTGTAAGAGGCTGT 58.990 41.667 0.00 0.00 0.00 4.40
5848 7470 5.476945 CCCTACATTTTTGTAAGAGGCTGTT 59.523 40.000 1.39 1.39 0.00 3.16
5849 7471 6.015434 CCCTACATTTTTGTAAGAGGCTGTTT 60.015 38.462 0.90 0.00 0.00 2.83
5850 7472 7.433680 CCTACATTTTTGTAAGAGGCTGTTTT 58.566 34.615 0.90 0.00 0.00 2.43
5851 7473 7.595130 CCTACATTTTTGTAAGAGGCTGTTTTC 59.405 37.037 0.90 0.00 0.00 2.29
5852 7474 6.872920 ACATTTTTGTAAGAGGCTGTTTTCA 58.127 32.000 0.90 0.08 0.00 2.69
5862 7484 2.952310 AGGCTGTTTTCAGGACTTGAAC 59.048 45.455 0.00 0.00 45.22 3.18
5863 7485 2.034685 GGCTGTTTTCAGGACTTGAACC 59.965 50.000 0.00 0.00 45.22 3.62
5864 7486 2.034685 GCTGTTTTCAGGACTTGAACCC 59.965 50.000 0.00 0.00 45.22 4.11
5865 7487 2.290641 CTGTTTTCAGGACTTGAACCCG 59.709 50.000 0.00 0.00 45.22 5.28
5866 7488 2.294979 GTTTTCAGGACTTGAACCCGT 58.705 47.619 0.00 0.00 45.22 5.28
5867 7489 1.961793 TTTCAGGACTTGAACCCGTG 58.038 50.000 0.00 0.00 45.22 4.94
5868 7490 1.124780 TTCAGGACTTGAACCCGTGA 58.875 50.000 0.00 0.00 40.82 4.35
5869 7491 0.391597 TCAGGACTTGAACCCGTGAC 59.608 55.000 0.00 0.00 31.34 3.67
5870 7492 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
5871 7493 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
5872 7494 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
5873 7495 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
5874 7496 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
5875 7497 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
5887 7509 2.847327 ACCTCATGGTCACAAGTCAG 57.153 50.000 0.00 0.00 44.78 3.51
5888 7510 2.050144 ACCTCATGGTCACAAGTCAGT 58.950 47.619 0.00 0.00 44.78 3.41
5889 7511 3.239449 ACCTCATGGTCACAAGTCAGTA 58.761 45.455 0.00 0.00 44.78 2.74
5890 7512 3.259374 ACCTCATGGTCACAAGTCAGTAG 59.741 47.826 0.00 0.00 44.78 2.57
5891 7513 3.257393 CTCATGGTCACAAGTCAGTAGC 58.743 50.000 0.00 0.00 0.00 3.58
5892 7514 2.899900 TCATGGTCACAAGTCAGTAGCT 59.100 45.455 0.00 0.00 0.00 3.32
5893 7515 3.324846 TCATGGTCACAAGTCAGTAGCTT 59.675 43.478 0.00 0.00 0.00 3.74
5894 7516 3.838244 TGGTCACAAGTCAGTAGCTTT 57.162 42.857 0.00 0.00 0.00 3.51
5895 7517 4.948341 TGGTCACAAGTCAGTAGCTTTA 57.052 40.909 0.00 0.00 0.00 1.85
5896 7518 5.483685 TGGTCACAAGTCAGTAGCTTTAT 57.516 39.130 0.00 0.00 0.00 1.40
5897 7519 5.479306 TGGTCACAAGTCAGTAGCTTTATC 58.521 41.667 0.00 0.00 0.00 1.75
5898 7520 5.011635 TGGTCACAAGTCAGTAGCTTTATCA 59.988 40.000 0.00 0.00 0.00 2.15
5899 7521 5.348997 GGTCACAAGTCAGTAGCTTTATCAC 59.651 44.000 0.00 0.00 0.00 3.06
5900 7522 6.159988 GTCACAAGTCAGTAGCTTTATCACT 58.840 40.000 0.00 0.00 0.00 3.41
5901 7523 6.090088 GTCACAAGTCAGTAGCTTTATCACTG 59.910 42.308 7.18 7.18 40.83 3.66
5902 7524 4.932200 ACAAGTCAGTAGCTTTATCACTGC 59.068 41.667 8.45 4.81 39.60 4.40
5903 7525 3.775202 AGTCAGTAGCTTTATCACTGCG 58.225 45.455 8.45 0.00 39.60 5.18
5904 7526 2.282820 GTCAGTAGCTTTATCACTGCGC 59.717 50.000 0.00 0.00 39.60 6.09
5905 7527 1.594862 CAGTAGCTTTATCACTGCGCC 59.405 52.381 4.18 0.00 33.86 6.53
5906 7528 1.207089 AGTAGCTTTATCACTGCGCCA 59.793 47.619 4.18 0.00 0.00 5.69
5907 7529 2.006888 GTAGCTTTATCACTGCGCCAA 58.993 47.619 4.18 0.00 0.00 4.52
5908 7530 1.089920 AGCTTTATCACTGCGCCAAG 58.910 50.000 4.18 0.00 0.00 3.61
5909 7531 0.099436 GCTTTATCACTGCGCCAAGG 59.901 55.000 4.18 0.00 0.00 3.61
5910 7532 0.099436 CTTTATCACTGCGCCAAGGC 59.901 55.000 4.18 0.00 37.85 4.35
5911 7533 0.322456 TTTATCACTGCGCCAAGGCT 60.322 50.000 4.18 0.00 39.32 4.58
5912 7534 0.744414 TTATCACTGCGCCAAGGCTC 60.744 55.000 4.18 1.20 39.32 4.70
5913 7535 2.593468 TATCACTGCGCCAAGGCTCC 62.593 60.000 4.18 0.71 39.32 4.70
5964 7586 9.855021 ATCCTATTAAAAACACACAATAGTTGC 57.145 29.630 0.00 0.00 31.78 4.17
5986 7608 1.570813 TACCGATGCTGCATTCTTCG 58.429 50.000 17.36 15.74 0.00 3.79
5987 7609 1.645455 CCGATGCTGCATTCTTCGG 59.355 57.895 23.02 23.02 42.21 4.30
5995 7617 1.452108 GCATTCTTCGGGGAGGTGG 60.452 63.158 0.00 0.00 0.00 4.61
6041 7663 4.921834 GCTTAGAGCCAGCTCGTT 57.078 55.556 13.70 0.47 46.90 3.85
6042 7664 3.145228 GCTTAGAGCCAGCTCGTTT 57.855 52.632 13.70 0.00 46.90 3.60
6043 7665 2.295253 GCTTAGAGCCAGCTCGTTTA 57.705 50.000 13.70 0.00 46.90 2.01
6044 7666 2.827652 GCTTAGAGCCAGCTCGTTTAT 58.172 47.619 13.70 0.00 46.90 1.40
6045 7667 3.978687 GCTTAGAGCCAGCTCGTTTATA 58.021 45.455 13.70 0.00 46.90 0.98
6046 7668 4.561105 GCTTAGAGCCAGCTCGTTTATAT 58.439 43.478 13.70 0.00 46.90 0.86
6047 7669 4.387256 GCTTAGAGCCAGCTCGTTTATATG 59.613 45.833 13.70 4.67 46.90 1.78
6048 7670 3.393089 AGAGCCAGCTCGTTTATATGG 57.607 47.619 13.70 0.00 46.90 2.74
6049 7671 2.700897 AGAGCCAGCTCGTTTATATGGT 59.299 45.455 13.70 0.00 46.90 3.55
6050 7672 2.802816 GAGCCAGCTCGTTTATATGGTG 59.197 50.000 3.49 0.00 33.06 4.17
6051 7673 1.873591 GCCAGCTCGTTTATATGGTGG 59.126 52.381 0.00 0.00 46.96 4.61
6052 7674 2.494059 CCAGCTCGTTTATATGGTGGG 58.506 52.381 0.00 0.00 42.38 4.61
6053 7675 2.158813 CCAGCTCGTTTATATGGTGGGT 60.159 50.000 0.00 0.00 42.38 4.51
6054 7676 3.070446 CCAGCTCGTTTATATGGTGGGTA 59.930 47.826 0.00 0.00 42.38 3.69
6055 7677 4.262894 CCAGCTCGTTTATATGGTGGGTAT 60.263 45.833 0.00 0.00 42.38 2.73
6056 7678 5.046878 CCAGCTCGTTTATATGGTGGGTATA 60.047 44.000 0.00 0.00 42.38 1.47
6057 7679 6.351881 CCAGCTCGTTTATATGGTGGGTATAT 60.352 42.308 0.00 0.00 42.38 0.86
6058 7680 7.147794 CCAGCTCGTTTATATGGTGGGTATATA 60.148 40.741 0.00 0.00 42.38 0.86
6059 7681 8.421784 CAGCTCGTTTATATGGTGGGTATATAT 58.578 37.037 0.00 0.00 0.00 0.86
6060 7682 8.421784 AGCTCGTTTATATGGTGGGTATATATG 58.578 37.037 0.00 0.00 0.00 1.78
6061 7683 8.418662 GCTCGTTTATATGGTGGGTATATATGA 58.581 37.037 0.00 0.00 0.00 2.15
6067 7689 9.703677 TTATATGGTGGGTATATATGAAGTCGA 57.296 33.333 0.00 0.00 0.00 4.20
6068 7690 8.783660 ATATGGTGGGTATATATGAAGTCGAT 57.216 34.615 0.00 0.00 0.00 3.59
6069 7691 6.928348 TGGTGGGTATATATGAAGTCGATT 57.072 37.500 0.00 0.00 0.00 3.34
6070 7692 6.931838 TGGTGGGTATATATGAAGTCGATTC 58.068 40.000 0.00 0.00 38.50 2.52
6085 7707 8.892723 TGAAGTCGATTCATATTATTTGTTGCT 58.107 29.630 6.28 0.00 43.09 3.91
6086 7708 9.374960 GAAGTCGATTCATATTATTTGTTGCTC 57.625 33.333 0.00 0.00 37.88 4.26
6087 7709 8.437360 AGTCGATTCATATTATTTGTTGCTCA 57.563 30.769 0.00 0.00 0.00 4.26
6088 7710 8.892723 AGTCGATTCATATTATTTGTTGCTCAA 58.107 29.630 0.00 0.00 0.00 3.02
6128 7750 4.561105 GCTTAGAGCCAGCTCGTTTATAT 58.439 43.478 13.70 0.00 46.90 0.86
6139 7761 6.535150 CCAGCTCGTTTATATGGTGGTATATG 59.465 42.308 0.00 0.00 41.51 1.78
6208 7851 8.820933 AGATGATGTATTTGTATTTCAGTGACG 58.179 33.333 0.00 0.00 0.00 4.35
6229 7872 7.903431 GTGACGTCCATTTGTGTTAGATAAATC 59.097 37.037 14.12 0.00 0.00 2.17
6231 7874 6.882140 ACGTCCATTTGTGTTAGATAAATCCA 59.118 34.615 0.00 0.00 0.00 3.41
6233 7876 8.405531 CGTCCATTTGTGTTAGATAAATCCATT 58.594 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 0.750249 TTGTCTCGGTTGTGCTCTGA 59.250 50.000 0.00 0.00 0.00 3.27
31 32 4.265056 GTGGTGGCCCGGTTGTCT 62.265 66.667 0.00 0.00 0.00 3.41
135 136 1.376037 CGCCCTCCCACTTGAAGTC 60.376 63.158 0.00 0.00 0.00 3.01
136 137 2.750350 CGCCCTCCCACTTGAAGT 59.250 61.111 0.00 0.00 0.00 3.01
166 167 2.892334 CGATTGTATTGCCGCCCCG 61.892 63.158 0.00 0.00 0.00 5.73
190 191 1.064003 TTGCACCTCCCAGCTTCTTA 58.936 50.000 0.00 0.00 0.00 2.10
243 244 1.301087 CGTTGGCCTGTTGTACCGA 60.301 57.895 3.32 0.00 0.00 4.69
327 332 3.083293 GTTCCGTGTAGAGAGAGGTTCT 58.917 50.000 0.00 0.00 39.43 3.01
414 419 4.296056 ACCCGTACTATCAAGAGGGAATT 58.704 43.478 5.23 0.00 38.19 2.17
499 504 4.271049 CAGGTTCGCATCGATTAGACATTT 59.729 41.667 0.00 0.00 35.23 2.32
535 540 9.167311 GGTCTAATGATGTGTTAAGTTCTTCAT 57.833 33.333 0.00 0.00 0.00 2.57
553 558 4.899502 ACAACTCTCCTTGTGGTCTAATG 58.100 43.478 0.00 0.00 32.95 1.90
585 590 7.555087 AGACATTTTCCATCTTTGTGTTTTGA 58.445 30.769 0.00 0.00 0.00 2.69
610 615 9.013229 TGAAGTTCCGTATAGAAGTACTGTTAA 57.987 33.333 0.00 0.00 0.00 2.01
621 626 2.767960 GGGGGTTGAAGTTCCGTATAGA 59.232 50.000 0.00 0.00 0.00 1.98
677 684 8.827177 TGTTACGTCTAAATCATGAAACTTCT 57.173 30.769 0.00 0.00 0.00 2.85
713 720 2.488153 CCAGGAACCCTCGTCAAATTTC 59.512 50.000 0.00 0.00 0.00 2.17
714 721 2.158519 ACCAGGAACCCTCGTCAAATTT 60.159 45.455 0.00 0.00 0.00 1.82
715 722 1.423921 ACCAGGAACCCTCGTCAAATT 59.576 47.619 0.00 0.00 0.00 1.82
716 723 1.064825 ACCAGGAACCCTCGTCAAAT 58.935 50.000 0.00 0.00 0.00 2.32
717 724 0.841289 AACCAGGAACCCTCGTCAAA 59.159 50.000 0.00 0.00 0.00 2.69
718 725 0.841289 AAACCAGGAACCCTCGTCAA 59.159 50.000 0.00 0.00 0.00 3.18
719 726 0.107831 CAAACCAGGAACCCTCGTCA 59.892 55.000 0.00 0.00 0.00 4.35
720 727 1.235281 GCAAACCAGGAACCCTCGTC 61.235 60.000 0.00 0.00 0.00 4.20
721 728 1.228154 GCAAACCAGGAACCCTCGT 60.228 57.895 0.00 0.00 0.00 4.18
731 738 5.502220 CGAAAAGGTCAAATTTGCAAACCAG 60.502 40.000 22.64 7.12 32.25 4.00
810 817 0.037590 TTTTGCGTATGGCTCCCTGT 59.962 50.000 0.00 0.00 44.05 4.00
856 863 1.153449 GGGGATGATGACGCGAACA 60.153 57.895 15.93 13.50 0.00 3.18
1151 1159 0.463295 GCTAGGTTCGGGGTTTAGGC 60.463 60.000 0.00 0.00 0.00 3.93
1162 1170 2.435069 GAGAAGGGTTAGGGCTAGGTTC 59.565 54.545 0.00 0.00 0.00 3.62
1176 1184 1.222113 GCGAAGGAAGGGAGAAGGG 59.778 63.158 0.00 0.00 0.00 3.95
1562 1570 1.140134 CCCAAAGGAACAGAGGGGGA 61.140 60.000 0.00 0.00 36.14 4.81
1619 1636 1.461127 GAACCTTCACATGAGTGCGTC 59.539 52.381 0.00 0.00 45.49 5.19
1632 1649 4.081586 AGACTGTCCGGATTTAGAACCTTC 60.082 45.833 7.81 0.52 0.00 3.46
1680 1698 4.644685 ACACCAACAAAGTCATAACTTGCT 59.355 37.500 0.00 0.00 45.07 3.91
1730 1748 0.915364 AGAAGTCCCTTGATGCCCTC 59.085 55.000 0.00 0.00 0.00 4.30
1831 1849 1.801512 CGCGATCGCTGTTCAGACA 60.802 57.895 34.69 0.00 39.32 3.41
1907 3138 3.525862 AGGCCCAAAAATTCCCATGTAA 58.474 40.909 0.00 0.00 0.00 2.41
1936 3169 2.477825 CAGCAGATCACAGGATAACCG 58.522 52.381 0.00 0.00 41.83 4.44
2021 3254 9.579932 AATTTCTCTCCACTTGACTATTCTTTT 57.420 29.630 0.00 0.00 0.00 2.27
2185 3421 1.078848 GGGCACAGCACAGAGTAGG 60.079 63.158 0.00 0.00 0.00 3.18
2349 3620 3.113322 CACTAGCACGATTAAGCGCTAA 58.887 45.455 12.05 6.02 36.58 3.09
2407 3678 3.622630 TCCTAGTTCTGTCTCTGCCTAC 58.377 50.000 0.00 0.00 0.00 3.18
2568 3959 2.224867 CCAACCACAGAGGGACAGAAAT 60.225 50.000 0.00 0.00 43.89 2.17
2642 4034 1.140407 GGCACTAGCACGACTAAGCG 61.140 60.000 0.00 0.00 44.61 4.68
2665 4057 0.038251 CTGTCTCACCTAAGCGCACA 60.038 55.000 11.47 0.00 0.00 4.57
2873 4265 9.653516 TTATGGCAATATTGAGGGAGATAAAAA 57.346 29.630 19.73 0.00 0.00 1.94
2978 4370 9.599866 CTTGTGAGTGTAATATTTAGTGGATGA 57.400 33.333 0.00 0.00 0.00 2.92
3088 4480 6.147821 GCTCGTCAGTATGGTTGCATATAATT 59.852 38.462 0.00 0.00 36.16 1.40
3163 4555 0.846693 AGCCTTGGTCAAACCTCTGT 59.153 50.000 0.00 0.00 39.58 3.41
3274 4666 5.324409 ACAAAATTCCAGATTGGTCTAGCA 58.676 37.500 0.00 0.00 39.03 3.49
3478 4872 8.742777 TCAAATGCTAATCTGCTTAGTTCAAAT 58.257 29.630 0.83 0.00 39.30 2.32
3535 4929 6.517529 GCAAGTATTTCCAAAACCATGGTGTA 60.518 38.462 20.60 0.00 41.46 2.90
3751 5148 8.654485 CCAAAATGGGAATATAATGATGAGGA 57.346 34.615 0.00 0.00 32.67 3.71
3807 5206 1.644509 ACACAGAGCACATAGGTCCA 58.355 50.000 0.00 0.00 45.87 4.02
3876 5276 6.338146 AGCGTCTGCAAGTATAGAAATGTAA 58.662 36.000 0.00 0.00 46.23 2.41
3891 5291 3.313803 TGACAAAATGTTTAGCGTCTGCA 59.686 39.130 0.00 0.00 46.23 4.41
3990 5393 8.376942 AGTTTATGTTAGCAAAACAAACAAACG 58.623 29.630 19.86 0.00 36.75 3.60
4110 5513 8.360390 TCATCAATACTAGCATACGAGTGATTT 58.640 33.333 0.00 0.00 33.42 2.17
4256 5818 7.994425 AAATCCAAACCAAAATATTCAACCC 57.006 32.000 0.00 0.00 0.00 4.11
4415 5982 8.892723 GTTTTTGAGGGAACAAATGAGAAAAAT 58.107 29.630 0.00 0.00 39.09 1.82
4444 6012 9.910511 CAAGTGCTCAATTATTTATTCAATTGC 57.089 29.630 0.00 0.00 40.41 3.56
4522 6090 7.724305 AACGTTGCTTAGATAAAACTCTGAA 57.276 32.000 0.00 0.00 0.00 3.02
4671 6239 8.609617 TCCTGATAAATGTATGACCCTATAGG 57.390 38.462 12.27 12.27 43.78 2.57
4796 6417 5.339990 GCAAACTCTTACTCTTTGCAACAA 58.660 37.500 0.00 0.00 45.96 2.83
4849 6470 0.598065 GCTTCCTGTTGAATTGCCGT 59.402 50.000 0.00 0.00 31.06 5.68
5037 6658 8.394121 GCTGAGGAGACACAATAAAATTAGAAG 58.606 37.037 0.00 0.00 0.00 2.85
5093 6714 2.871096 TCCCTGGCGTTATTTTCTGT 57.129 45.000 0.00 0.00 0.00 3.41
5533 7155 2.978978 TCCTCTTCAGGACATGGAAACA 59.021 45.455 0.00 0.00 44.75 2.83
5723 7345 5.937540 GCTGCCCTTTAACCAAAATTGTTAT 59.062 36.000 0.00 0.00 0.00 1.89
5724 7346 5.301555 GCTGCCCTTTAACCAAAATTGTTA 58.698 37.500 0.00 0.00 0.00 2.41
5725 7347 4.133820 GCTGCCCTTTAACCAAAATTGTT 58.866 39.130 0.00 0.00 0.00 2.83
5726 7348 3.495983 GGCTGCCCTTTAACCAAAATTGT 60.496 43.478 7.66 0.00 0.00 2.71
5727 7349 3.073678 GGCTGCCCTTTAACCAAAATTG 58.926 45.455 7.66 0.00 0.00 2.32
5728 7350 2.978978 AGGCTGCCCTTTAACCAAAATT 59.021 40.909 16.57 0.00 38.74 1.82
5729 7351 2.302733 CAGGCTGCCCTTTAACCAAAAT 59.697 45.455 16.57 0.00 40.33 1.82
5730 7352 1.691434 CAGGCTGCCCTTTAACCAAAA 59.309 47.619 16.57 0.00 40.33 2.44
5731 7353 1.337118 CAGGCTGCCCTTTAACCAAA 58.663 50.000 16.57 0.00 40.33 3.28
5732 7354 0.541764 CCAGGCTGCCCTTTAACCAA 60.542 55.000 16.57 0.00 40.33 3.67
5733 7355 1.076549 CCAGGCTGCCCTTTAACCA 59.923 57.895 16.57 0.00 40.33 3.67
5734 7356 1.076727 ACCAGGCTGCCCTTTAACC 59.923 57.895 16.57 0.00 40.33 2.85
5735 7357 1.877576 GCACCAGGCTGCCCTTTAAC 61.878 60.000 16.57 0.00 40.33 2.01
5736 7358 1.606313 GCACCAGGCTGCCCTTTAA 60.606 57.895 16.57 0.00 40.33 1.52
5737 7359 2.035626 GCACCAGGCTGCCCTTTA 59.964 61.111 16.57 0.00 40.33 1.85
5738 7360 3.534704 ATGCACCAGGCTGCCCTTT 62.535 57.895 16.57 0.00 45.15 3.11
5739 7361 3.988678 ATGCACCAGGCTGCCCTT 61.989 61.111 16.57 0.00 45.15 3.95
5740 7362 4.753662 CATGCACCAGGCTGCCCT 62.754 66.667 16.57 0.00 45.15 5.19
5741 7363 3.643595 TACATGCACCAGGCTGCCC 62.644 63.158 16.57 0.00 45.15 5.36
5742 7364 2.045045 TACATGCACCAGGCTGCC 60.045 61.111 11.65 11.65 45.15 4.85
5743 7365 2.768492 GCTACATGCACCAGGCTGC 61.768 63.158 9.56 0.00 45.15 5.25
5744 7366 1.077930 AGCTACATGCACCAGGCTG 60.078 57.895 7.75 7.75 45.94 4.85
5745 7367 1.222936 GAGCTACATGCACCAGGCT 59.777 57.895 5.89 5.89 45.94 4.58
5746 7368 3.819188 GAGCTACATGCACCAGGC 58.181 61.111 0.00 0.00 45.94 4.85
5771 7393 4.778143 CCTTTCCCGGACCCTGCG 62.778 72.222 0.73 0.00 0.00 5.18
5772 7394 4.426313 CCCTTTCCCGGACCCTGC 62.426 72.222 0.73 0.00 0.00 4.85
5773 7395 2.933834 ACCCTTTCCCGGACCCTG 60.934 66.667 0.73 0.00 0.00 4.45
5774 7396 2.609921 GACCCTTTCCCGGACCCT 60.610 66.667 0.73 0.00 0.00 4.34
5775 7397 3.725032 GGACCCTTTCCCGGACCC 61.725 72.222 0.73 0.00 38.70 4.46
5776 7398 4.091939 CGGACCCTTTCCCGGACC 62.092 72.222 0.73 0.00 42.27 4.46
5777 7399 2.999063 TCGGACCCTTTCCCGGAC 60.999 66.667 0.73 0.00 45.36 4.79
5778 7400 2.999063 GTCGGACCCTTTCCCGGA 60.999 66.667 0.73 0.00 45.36 5.14
5779 7401 4.091939 GGTCGGACCCTTTCCCGG 62.092 72.222 16.55 0.00 45.36 5.73
5780 7402 3.315949 TGGTCGGACCCTTTCCCG 61.316 66.667 23.81 0.00 42.27 5.14
5781 7403 1.775934 AAGTGGTCGGACCCTTTCCC 61.776 60.000 23.81 5.51 42.27 3.97
5782 7404 0.109913 AAAGTGGTCGGACCCTTTCC 59.890 55.000 25.31 11.54 35.36 3.13
5783 7405 1.235724 CAAAGTGGTCGGACCCTTTC 58.764 55.000 26.88 15.90 36.95 2.62
5784 7406 0.179001 CCAAAGTGGTCGGACCCTTT 60.179 55.000 25.31 25.31 38.45 3.11
5785 7407 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
5786 7408 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
5787 7409 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
5788 7410 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
5789 7411 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
5794 7416 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
5795 7417 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
5796 7418 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
5797 7419 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
5798 7420 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
5799 7421 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
5800 7422 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
5801 7423 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
5802 7424 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
5803 7425 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
5804 7426 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
5805 7427 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
5806 7428 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
5807 7429 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
5808 7430 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
5809 7431 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
5810 7432 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
5811 7433 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
5812 7434 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
5813 7435 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
5814 7436 1.463674 AAATGTAGGGAAAGGCTGCG 58.536 50.000 0.00 0.00 0.00 5.18
5815 7437 3.006859 ACAAAAATGTAGGGAAAGGCTGC 59.993 43.478 0.00 0.00 0.00 5.25
5816 7438 4.871933 ACAAAAATGTAGGGAAAGGCTG 57.128 40.909 0.00 0.00 0.00 4.85
5817 7439 6.311735 TCTTACAAAAATGTAGGGAAAGGCT 58.688 36.000 0.00 0.00 0.00 4.58
5818 7440 6.350194 CCTCTTACAAAAATGTAGGGAAAGGC 60.350 42.308 0.00 0.00 0.00 4.35
5819 7441 6.350194 GCCTCTTACAAAAATGTAGGGAAAGG 60.350 42.308 0.00 0.87 0.00 3.11
5820 7442 6.434340 AGCCTCTTACAAAAATGTAGGGAAAG 59.566 38.462 0.00 0.00 0.00 2.62
5821 7443 6.208599 CAGCCTCTTACAAAAATGTAGGGAAA 59.791 38.462 0.00 0.00 0.00 3.13
5822 7444 5.710099 CAGCCTCTTACAAAAATGTAGGGAA 59.290 40.000 0.00 0.00 0.00 3.97
5823 7445 5.222048 ACAGCCTCTTACAAAAATGTAGGGA 60.222 40.000 0.00 0.00 0.00 4.20
5824 7446 5.010282 ACAGCCTCTTACAAAAATGTAGGG 58.990 41.667 0.00 1.17 0.00 3.53
5825 7447 6.575162 AACAGCCTCTTACAAAAATGTAGG 57.425 37.500 0.00 0.00 0.00 3.18
5826 7448 8.134895 TGAAAACAGCCTCTTACAAAAATGTAG 58.865 33.333 0.00 0.00 0.00 2.74
5827 7449 8.001881 TGAAAACAGCCTCTTACAAAAATGTA 57.998 30.769 0.00 0.00 0.00 2.29
5828 7450 6.872920 TGAAAACAGCCTCTTACAAAAATGT 58.127 32.000 0.00 0.00 0.00 2.71
5829 7451 6.421801 CCTGAAAACAGCCTCTTACAAAAATG 59.578 38.462 0.00 0.00 0.00 2.32
5830 7452 6.323739 TCCTGAAAACAGCCTCTTACAAAAAT 59.676 34.615 0.00 0.00 0.00 1.82
5831 7453 5.654650 TCCTGAAAACAGCCTCTTACAAAAA 59.345 36.000 0.00 0.00 0.00 1.94
5832 7454 5.067283 GTCCTGAAAACAGCCTCTTACAAAA 59.933 40.000 0.00 0.00 0.00 2.44
5833 7455 4.578928 GTCCTGAAAACAGCCTCTTACAAA 59.421 41.667 0.00 0.00 0.00 2.83
5834 7456 4.134563 GTCCTGAAAACAGCCTCTTACAA 58.865 43.478 0.00 0.00 0.00 2.41
5835 7457 3.391296 AGTCCTGAAAACAGCCTCTTACA 59.609 43.478 0.00 0.00 0.00 2.41
5836 7458 4.009370 AGTCCTGAAAACAGCCTCTTAC 57.991 45.455 0.00 0.00 0.00 2.34
5837 7459 4.102524 TCAAGTCCTGAAAACAGCCTCTTA 59.897 41.667 0.00 0.00 0.00 2.10
5838 7460 3.117888 TCAAGTCCTGAAAACAGCCTCTT 60.118 43.478 0.00 0.00 0.00 2.85
5839 7461 2.439507 TCAAGTCCTGAAAACAGCCTCT 59.560 45.455 0.00 0.00 0.00 3.69
5840 7462 2.851195 TCAAGTCCTGAAAACAGCCTC 58.149 47.619 0.00 0.00 0.00 4.70
5841 7463 2.952310 GTTCAAGTCCTGAAAACAGCCT 59.048 45.455 0.00 0.00 45.67 4.58
5842 7464 2.034685 GGTTCAAGTCCTGAAAACAGCC 59.965 50.000 0.00 0.00 45.67 4.85
5843 7465 2.034685 GGGTTCAAGTCCTGAAAACAGC 59.965 50.000 0.00 0.00 45.67 4.40
5844 7466 2.290641 CGGGTTCAAGTCCTGAAAACAG 59.709 50.000 0.00 0.00 45.67 3.16
5845 7467 2.294074 CGGGTTCAAGTCCTGAAAACA 58.706 47.619 0.00 0.00 45.67 2.83
5846 7468 2.032924 CACGGGTTCAAGTCCTGAAAAC 59.967 50.000 0.00 0.00 45.67 2.43
5847 7469 2.092861 TCACGGGTTCAAGTCCTGAAAA 60.093 45.455 0.00 0.00 45.67 2.29
5848 7470 1.487142 TCACGGGTTCAAGTCCTGAAA 59.513 47.619 0.00 0.00 45.67 2.69
5849 7471 1.124780 TCACGGGTTCAAGTCCTGAA 58.875 50.000 0.00 0.00 41.93 3.02
5850 7472 0.391597 GTCACGGGTTCAAGTCCTGA 59.608 55.000 0.00 0.00 35.49 3.86
5851 7473 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
5852 7474 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
5853 7475 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
5854 7476 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
5855 7477 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
5856 7478 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
5857 7479 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
5858 7480 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
5859 7481 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
5869 7491 2.847327 ACTGACTTGTGACCATGAGG 57.153 50.000 0.00 0.00 42.21 3.86
5870 7492 3.056250 AGCTACTGACTTGTGACCATGAG 60.056 47.826 0.00 0.00 0.00 2.90
5871 7493 2.899900 AGCTACTGACTTGTGACCATGA 59.100 45.455 0.00 0.00 0.00 3.07
5872 7494 3.325293 AGCTACTGACTTGTGACCATG 57.675 47.619 0.00 0.00 0.00 3.66
5873 7495 4.357918 AAAGCTACTGACTTGTGACCAT 57.642 40.909 0.00 0.00 0.00 3.55
5874 7496 3.838244 AAAGCTACTGACTTGTGACCA 57.162 42.857 0.00 0.00 0.00 4.02
5875 7497 5.348997 GTGATAAAGCTACTGACTTGTGACC 59.651 44.000 0.00 0.00 0.00 4.02
5876 7498 6.090088 CAGTGATAAAGCTACTGACTTGTGAC 59.910 42.308 7.68 0.00 43.35 3.67
5877 7499 6.159293 CAGTGATAAAGCTACTGACTTGTGA 58.841 40.000 7.68 0.00 43.35 3.58
5878 7500 5.163913 GCAGTGATAAAGCTACTGACTTGTG 60.164 44.000 16.10 0.00 43.35 3.33
5879 7501 4.932200 GCAGTGATAAAGCTACTGACTTGT 59.068 41.667 16.10 0.00 43.35 3.16
5880 7502 4.032217 CGCAGTGATAAAGCTACTGACTTG 59.968 45.833 16.10 0.00 43.35 3.16
5881 7503 4.177026 CGCAGTGATAAAGCTACTGACTT 58.823 43.478 16.10 0.00 43.35 3.01
5882 7504 3.775202 CGCAGTGATAAAGCTACTGACT 58.225 45.455 16.10 0.00 43.35 3.41
5883 7505 2.282820 GCGCAGTGATAAAGCTACTGAC 59.717 50.000 16.10 7.56 43.35 3.51
5884 7506 2.540515 GCGCAGTGATAAAGCTACTGA 58.459 47.619 16.10 0.00 43.35 3.41
5885 7507 1.594862 GGCGCAGTGATAAAGCTACTG 59.405 52.381 10.83 8.89 43.49 2.74
5886 7508 1.207089 TGGCGCAGTGATAAAGCTACT 59.793 47.619 10.83 0.00 0.00 2.57
5887 7509 1.651987 TGGCGCAGTGATAAAGCTAC 58.348 50.000 10.83 0.00 0.00 3.58
5888 7510 2.279741 CTTGGCGCAGTGATAAAGCTA 58.720 47.619 10.83 0.00 0.00 3.32
5889 7511 1.089920 CTTGGCGCAGTGATAAAGCT 58.910 50.000 10.83 0.00 0.00 3.74
5890 7512 0.099436 CCTTGGCGCAGTGATAAAGC 59.901 55.000 10.83 0.00 0.00 3.51
5891 7513 0.099436 GCCTTGGCGCAGTGATAAAG 59.901 55.000 10.83 0.71 0.00 1.85
5892 7514 0.322456 AGCCTTGGCGCAGTGATAAA 60.322 50.000 10.83 0.00 0.00 1.40
5893 7515 0.744414 GAGCCTTGGCGCAGTGATAA 60.744 55.000 10.83 0.00 0.00 1.75
5894 7516 1.153369 GAGCCTTGGCGCAGTGATA 60.153 57.895 10.83 0.00 0.00 2.15
5895 7517 2.437359 GAGCCTTGGCGCAGTGAT 60.437 61.111 10.83 0.00 0.00 3.06
5896 7518 4.704833 GGAGCCTTGGCGCAGTGA 62.705 66.667 16.55 0.00 0.00 3.41
5902 7524 3.721706 AGAAGGGGAGCCTTGGCG 61.722 66.667 5.95 0.00 0.00 5.69
5903 7525 2.044551 CAGAAGGGGAGCCTTGGC 60.045 66.667 2.97 2.97 0.00 4.52
5904 7526 0.405585 TTTCAGAAGGGGAGCCTTGG 59.594 55.000 0.00 0.00 0.00 3.61
5905 7527 2.521547 ATTTCAGAAGGGGAGCCTTG 57.478 50.000 0.00 0.00 0.00 3.61
5906 7528 3.333680 TGTTATTTCAGAAGGGGAGCCTT 59.666 43.478 0.00 0.00 0.00 4.35
5907 7529 2.919602 TGTTATTTCAGAAGGGGAGCCT 59.080 45.455 0.00 0.00 0.00 4.58
5908 7530 3.366052 TGTTATTTCAGAAGGGGAGCC 57.634 47.619 0.00 0.00 0.00 4.70
5909 7531 5.921962 AATTGTTATTTCAGAAGGGGAGC 57.078 39.130 0.00 0.00 0.00 4.70
5910 7532 7.099120 CCAAAATTGTTATTTCAGAAGGGGAG 58.901 38.462 0.00 0.00 32.85 4.30
5911 7533 6.556874 ACCAAAATTGTTATTTCAGAAGGGGA 59.443 34.615 0.00 0.00 32.85 4.81
5912 7534 6.768483 ACCAAAATTGTTATTTCAGAAGGGG 58.232 36.000 0.00 0.00 32.85 4.79
5913 7535 9.942850 ATAACCAAAATTGTTATTTCAGAAGGG 57.057 29.630 0.00 0.00 32.85 3.95
5944 7566 9.303537 GGTAAAGCAACTATTGTGTGTTTTTAA 57.696 29.630 8.45 0.00 0.00 1.52
5945 7567 7.644551 CGGTAAAGCAACTATTGTGTGTTTTTA 59.355 33.333 8.45 0.00 0.00 1.52
5950 7572 4.382291 TCGGTAAAGCAACTATTGTGTGT 58.618 39.130 0.00 0.00 0.00 3.72
5964 7586 3.544834 CGAAGAATGCAGCATCGGTAAAG 60.545 47.826 8.77 0.00 0.00 1.85
5986 7608 2.034221 GTTGCAGACCACCTCCCC 59.966 66.667 0.00 0.00 0.00 4.81
5987 7609 2.358737 CGTTGCAGACCACCTCCC 60.359 66.667 0.00 0.00 0.00 4.30
6024 7646 2.295253 TAAACGAGCTGGCTCTAAGC 57.705 50.000 18.57 0.00 40.69 3.09
6025 7647 4.926238 CCATATAAACGAGCTGGCTCTAAG 59.074 45.833 18.57 7.53 40.69 2.18
6026 7648 4.344102 ACCATATAAACGAGCTGGCTCTAA 59.656 41.667 18.57 3.90 40.69 2.10
6027 7649 3.895656 ACCATATAAACGAGCTGGCTCTA 59.104 43.478 18.57 6.74 40.69 2.43
6028 7650 2.700897 ACCATATAAACGAGCTGGCTCT 59.299 45.455 18.57 4.83 40.69 4.09
6029 7651 2.802816 CACCATATAAACGAGCTGGCTC 59.197 50.000 12.09 12.09 39.55 4.70
6030 7652 2.485479 CCACCATATAAACGAGCTGGCT 60.485 50.000 0.00 0.00 0.00 4.75
6031 7653 1.873591 CCACCATATAAACGAGCTGGC 59.126 52.381 0.00 0.00 0.00 4.85
6032 7654 2.158813 ACCCACCATATAAACGAGCTGG 60.159 50.000 0.00 0.00 0.00 4.85
6033 7655 3.194005 ACCCACCATATAAACGAGCTG 57.806 47.619 0.00 0.00 0.00 4.24
6034 7656 6.869206 ATATACCCACCATATAAACGAGCT 57.131 37.500 0.00 0.00 0.00 4.09
6035 7657 8.418662 TCATATATACCCACCATATAAACGAGC 58.581 37.037 0.00 0.00 0.00 5.03
6041 7663 9.703677 TCGACTTCATATATACCCACCATATAA 57.296 33.333 0.00 0.00 0.00 0.98
6042 7664 9.877222 ATCGACTTCATATATACCCACCATATA 57.123 33.333 0.00 0.00 0.00 0.86
6043 7665 8.783660 ATCGACTTCATATATACCCACCATAT 57.216 34.615 0.00 0.00 0.00 1.78
6044 7666 8.603898 AATCGACTTCATATATACCCACCATA 57.396 34.615 0.00 0.00 0.00 2.74
6045 7667 7.180229 TGAATCGACTTCATATATACCCACCAT 59.820 37.037 6.28 0.00 38.97 3.55
6046 7668 6.495526 TGAATCGACTTCATATATACCCACCA 59.504 38.462 6.28 0.00 38.97 4.17
6047 7669 6.931838 TGAATCGACTTCATATATACCCACC 58.068 40.000 6.28 0.00 38.97 4.61
6060 7682 9.374960 GAGCAACAAATAATATGAATCGACTTC 57.625 33.333 0.00 0.00 0.00 3.01
6061 7683 8.892723 TGAGCAACAAATAATATGAATCGACTT 58.107 29.630 0.00 0.00 0.00 3.01
6062 7684 8.437360 TGAGCAACAAATAATATGAATCGACT 57.563 30.769 0.00 0.00 0.00 4.18
6063 7685 9.502145 TTTGAGCAACAAATAATATGAATCGAC 57.498 29.630 5.25 0.00 42.57 4.20
6078 7700 4.953667 TGCCACATTTATTTGAGCAACAA 58.046 34.783 0.00 0.00 36.65 2.83
6079 7701 4.039004 ACTGCCACATTTATTTGAGCAACA 59.961 37.500 0.00 0.00 32.14 3.33
6080 7702 4.559153 ACTGCCACATTTATTTGAGCAAC 58.441 39.130 0.00 0.00 32.14 4.17
6081 7703 4.870123 ACTGCCACATTTATTTGAGCAA 57.130 36.364 0.00 0.00 32.14 3.91
6082 7704 5.163530 CCATACTGCCACATTTATTTGAGCA 60.164 40.000 0.00 0.00 0.00 4.26
6083 7705 5.284079 CCATACTGCCACATTTATTTGAGC 58.716 41.667 0.00 0.00 0.00 4.26
6084 7706 5.068198 AGCCATACTGCCACATTTATTTGAG 59.932 40.000 0.00 0.00 0.00 3.02
6085 7707 4.955450 AGCCATACTGCCACATTTATTTGA 59.045 37.500 0.00 0.00 0.00 2.69
6086 7708 5.266733 AGCCATACTGCCACATTTATTTG 57.733 39.130 0.00 0.00 0.00 2.32
6087 7709 5.937975 AAGCCATACTGCCACATTTATTT 57.062 34.783 0.00 0.00 0.00 1.40
6088 7710 6.364701 TCTAAGCCATACTGCCACATTTATT 58.635 36.000 0.00 0.00 0.00 1.40
6089 7711 5.940617 TCTAAGCCATACTGCCACATTTAT 58.059 37.500 0.00 0.00 0.00 1.40
6090 7712 5.366482 TCTAAGCCATACTGCCACATTTA 57.634 39.130 0.00 0.00 0.00 1.40
6091 7713 4.202441 CTCTAAGCCATACTGCCACATTT 58.798 43.478 0.00 0.00 0.00 2.32
6092 7714 3.813443 CTCTAAGCCATACTGCCACATT 58.187 45.455 0.00 0.00 0.00 2.71
6093 7715 2.486191 GCTCTAAGCCATACTGCCACAT 60.486 50.000 0.00 0.00 34.48 3.21
6094 7716 1.134401 GCTCTAAGCCATACTGCCACA 60.134 52.381 0.00 0.00 34.48 4.17
6095 7717 1.587547 GCTCTAAGCCATACTGCCAC 58.412 55.000 0.00 0.00 34.48 5.01
6128 7750 5.128008 TGAATCGACTTCACATATACCACCA 59.872 40.000 6.28 0.00 38.97 4.17
6139 7761 7.636359 GCAACAAGTAATATGAATCGACTTCAC 59.364 37.037 10.97 1.73 46.37 3.18
6195 7834 5.049680 ACACAAATGGACGTCACTGAAATAC 60.050 40.000 18.91 0.00 0.00 1.89
6229 7872 6.923012 TCCATGTTACTTGTCATTCAAATGG 58.077 36.000 3.05 0.00 39.17 3.16
6231 7874 7.092716 GCTTCCATGTTACTTGTCATTCAAAT 58.907 34.615 0.00 0.00 35.48 2.32
6233 7876 5.334802 CGCTTCCATGTTACTTGTCATTCAA 60.335 40.000 0.00 0.00 34.61 2.69
6237 7880 3.937814 TCGCTTCCATGTTACTTGTCAT 58.062 40.909 0.00 0.00 0.00 3.06
6238 7881 3.394674 TCGCTTCCATGTTACTTGTCA 57.605 42.857 0.00 0.00 0.00 3.58
6245 7888 4.941263 AGTATTTGCTTCGCTTCCATGTTA 59.059 37.500 0.00 0.00 0.00 2.41
6277 7924 9.933723 CATTGACATAAGTGGTGAGATCATATA 57.066 33.333 0.00 0.00 0.00 0.86
6278 7925 7.881751 CCATTGACATAAGTGGTGAGATCATAT 59.118 37.037 0.00 0.00 0.00 1.78
6279 7926 7.219322 CCATTGACATAAGTGGTGAGATCATA 58.781 38.462 0.00 0.00 0.00 2.15
6280 7927 6.060136 CCATTGACATAAGTGGTGAGATCAT 58.940 40.000 0.00 0.00 0.00 2.45
6281 7928 5.430886 CCATTGACATAAGTGGTGAGATCA 58.569 41.667 0.00 0.00 0.00 2.92
6282 7929 4.274459 GCCATTGACATAAGTGGTGAGATC 59.726 45.833 0.00 0.00 34.23 2.75
6290 7937 4.458397 AGGATGAGCCATTGACATAAGTG 58.542 43.478 0.00 0.00 40.02 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.