Multiple sequence alignment - TraesCS1A01G110000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G110000 chr1A 100.000 3933 0 0 1 3933 108921320 108925252 0.000000e+00 7263.0
1 TraesCS1A01G110000 chr1A 83.088 136 12 8 426 556 108909418 108909547 3.210000e-21 113.0
2 TraesCS1A01G110000 chr1A 84.524 84 9 3 469 552 108817501 108817580 3.260000e-11 80.5
3 TraesCS1A01G110000 chr1B 90.703 2818 142 57 297 3046 121403594 121406359 0.000000e+00 3642.0
4 TraesCS1A01G110000 chr1B 92.580 876 45 11 3062 3933 121406431 121407290 0.000000e+00 1240.0
5 TraesCS1A01G110000 chr1B 91.864 295 24 0 1 295 545432136 545431842 2.830000e-111 412.0
6 TraesCS1A01G110000 chr1B 91.525 295 25 0 1 295 584317550 584317256 1.320000e-109 407.0
7 TraesCS1A01G110000 chr1B 88.737 293 33 0 1 293 659719286 659719578 3.740000e-95 359.0
8 TraesCS1A01G110000 chr1B 82.734 139 16 6 419 556 121350389 121350520 2.480000e-22 117.0
9 TraesCS1A01G110000 chr1B 82.482 137 16 6 423 558 121279667 121279796 3.210000e-21 113.0
10 TraesCS1A01G110000 chr1D 95.462 1785 77 4 1942 3724 77839654 77841436 0.000000e+00 2844.0
11 TraesCS1A01G110000 chr1D 90.130 1692 77 44 297 1934 77837910 77839565 0.000000e+00 2117.0
12 TraesCS1A01G110000 chr1D 95.370 216 10 0 3712 3927 77848293 77848508 1.050000e-90 344.0
13 TraesCS1A01G110000 chr1D 79.845 129 20 5 423 551 77759160 77759282 5.410000e-14 89.8
14 TraesCS1A01G110000 chr3A 94.576 295 16 0 1 295 508527711 508527417 1.290000e-124 457.0
15 TraesCS1A01G110000 chr4B 90.847 295 27 0 1 295 278430808 278431102 2.850000e-106 396.0
16 TraesCS1A01G110000 chr7B 90.508 295 28 0 1 295 11597136 11596842 1.330000e-104 390.0
17 TraesCS1A01G110000 chr5D 77.220 518 102 14 1178 1687 326118246 326118755 4.970000e-74 289.0
18 TraesCS1A01G110000 chr5D 81.481 270 47 3 1180 1447 325422829 325423097 6.620000e-53 219.0
19 TraesCS1A01G110000 chr5B 81.919 271 48 1 1178 1447 378510703 378510973 1.100000e-55 228.0
20 TraesCS1A01G110000 chr5B 81.343 268 48 2 1178 1444 377978343 377978609 2.380000e-52 217.0
21 TraesCS1A01G110000 chr5A 82.239 259 44 2 1187 1444 430508305 430508048 5.120000e-54 222.0
22 TraesCS1A01G110000 chr4D 79.152 283 53 6 1546 1825 283882645 283882366 1.440000e-44 191.0
23 TraesCS1A01G110000 chr4A 75.801 281 68 0 10 290 73166772 73166492 4.100000e-30 143.0
24 TraesCS1A01G110000 chr7D 75.591 254 55 7 1197 1445 115049858 115049607 6.900000e-23 119.0
25 TraesCS1A01G110000 chr7A 75.591 254 55 7 1197 1445 119704115 119703864 6.900000e-23 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G110000 chr1A 108921320 108925252 3932 False 7263.0 7263 100.0000 1 3933 1 chr1A.!!$F3 3932
1 TraesCS1A01G110000 chr1B 121403594 121407290 3696 False 2441.0 3642 91.6415 297 3933 2 chr1B.!!$F4 3636
2 TraesCS1A01G110000 chr1D 77837910 77841436 3526 False 2480.5 2844 92.7960 297 3724 2 chr1D.!!$F3 3427
3 TraesCS1A01G110000 chr5D 326118246 326118755 509 False 289.0 289 77.2200 1178 1687 1 chr5D.!!$F2 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.172578 TGTCAGTAATGAGGCGTCCG 59.827 55.0 3.56 0.00 0.0 4.79 F
148 149 0.248949 GTAATGAGGCGTCCGAGGAC 60.249 60.0 12.07 12.07 41.4 3.85 F
881 919 0.251634 CTCCTCTTCAACTCCCCAGC 59.748 60.0 0.00 0.00 0.0 4.85 F
924 975 0.527113 CAACCAATCTGCATCGCCAA 59.473 50.0 0.00 0.00 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1868 1944 0.031585 TCGACAACTCGTGGTCAAGG 59.968 55.000 5.51 0.00 41.02 3.61 R
1897 1973 0.320683 TGACATTCAGCCGTCCACAG 60.321 55.000 0.00 0.00 0.00 3.66 R
2823 2992 1.129624 GCAAAATGTCGGCGTGTATCA 59.870 47.619 6.85 0.44 0.00 2.15 R
2962 3131 6.659745 TGCTACTCTTACTCCTTTACAACA 57.340 37.500 0.00 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.941263 TCCAAATAACTCCATTCAACTCGG 59.059 41.667 0.00 0.00 0.00 4.63
24 25 4.700213 CCAAATAACTCCATTCAACTCGGT 59.300 41.667 0.00 0.00 0.00 4.69
25 26 5.163754 CCAAATAACTCCATTCAACTCGGTC 60.164 44.000 0.00 0.00 0.00 4.79
26 27 2.080286 AACTCCATTCAACTCGGTCG 57.920 50.000 0.00 0.00 0.00 4.79
27 28 0.966920 ACTCCATTCAACTCGGTCGT 59.033 50.000 0.00 0.00 0.00 4.34
28 29 2.165167 ACTCCATTCAACTCGGTCGTA 58.835 47.619 0.00 0.00 0.00 3.43
29 30 2.559668 ACTCCATTCAACTCGGTCGTAA 59.440 45.455 0.00 0.00 0.00 3.18
30 31 3.179830 CTCCATTCAACTCGGTCGTAAG 58.820 50.000 0.00 0.00 0.00 2.34
31 32 2.559668 TCCATTCAACTCGGTCGTAAGT 59.440 45.455 0.00 0.00 39.48 2.24
32 33 3.006110 TCCATTCAACTCGGTCGTAAGTT 59.994 43.478 0.00 0.00 36.16 2.66
33 34 3.744426 CCATTCAACTCGGTCGTAAGTTT 59.256 43.478 0.00 0.00 33.53 2.66
34 35 4.212636 CCATTCAACTCGGTCGTAAGTTTT 59.787 41.667 0.00 0.00 33.53 2.43
35 36 5.371629 CATTCAACTCGGTCGTAAGTTTTC 58.628 41.667 0.00 0.00 33.53 2.29
36 37 4.044336 TCAACTCGGTCGTAAGTTTTCA 57.956 40.909 0.00 0.00 33.53 2.69
37 38 4.624015 TCAACTCGGTCGTAAGTTTTCAT 58.376 39.130 0.00 0.00 33.53 2.57
38 39 4.682860 TCAACTCGGTCGTAAGTTTTCATC 59.317 41.667 0.00 0.00 33.53 2.92
39 40 4.247267 ACTCGGTCGTAAGTTTTCATCA 57.753 40.909 0.00 0.00 39.48 3.07
40 41 4.817517 ACTCGGTCGTAAGTTTTCATCAT 58.182 39.130 0.00 0.00 39.48 2.45
41 42 5.957798 ACTCGGTCGTAAGTTTTCATCATA 58.042 37.500 0.00 0.00 39.48 2.15
42 43 6.570692 ACTCGGTCGTAAGTTTTCATCATAT 58.429 36.000 0.00 0.00 39.48 1.78
43 44 6.696148 ACTCGGTCGTAAGTTTTCATCATATC 59.304 38.462 0.00 0.00 39.48 1.63
44 45 6.566141 TCGGTCGTAAGTTTTCATCATATCA 58.434 36.000 0.00 0.00 39.48 2.15
45 46 7.036829 TCGGTCGTAAGTTTTCATCATATCAA 58.963 34.615 0.00 0.00 39.48 2.57
46 47 7.222031 TCGGTCGTAAGTTTTCATCATATCAAG 59.778 37.037 0.00 0.00 39.48 3.02
47 48 7.010183 CGGTCGTAAGTTTTCATCATATCAAGT 59.990 37.037 0.00 0.00 39.48 3.16
48 49 8.665685 GGTCGTAAGTTTTCATCATATCAAGTT 58.334 33.333 0.00 0.00 39.48 2.66
55 56 9.362539 AGTTTTCATCATATCAAGTTTGATTGC 57.637 29.630 12.17 0.00 45.13 3.56
56 57 7.974243 TTTCATCATATCAAGTTTGATTGCG 57.026 32.000 12.17 2.99 45.13 4.85
57 58 5.513376 TCATCATATCAAGTTTGATTGCGC 58.487 37.500 12.17 0.00 45.13 6.09
58 59 4.961435 TCATATCAAGTTTGATTGCGCA 57.039 36.364 5.66 5.66 45.13 6.09
59 60 5.307926 TCATATCAAGTTTGATTGCGCAA 57.692 34.783 27.24 27.24 45.13 4.85
60 61 5.334319 TCATATCAAGTTTGATTGCGCAAG 58.666 37.500 28.62 12.03 45.13 4.01
61 62 3.921119 ATCAAGTTTGATTGCGCAAGA 57.079 38.095 28.62 17.06 45.13 3.02
62 63 3.272439 TCAAGTTTGATTGCGCAAGAG 57.728 42.857 28.62 11.03 32.75 2.85
63 64 2.618241 TCAAGTTTGATTGCGCAAGAGT 59.382 40.909 28.62 12.13 32.75 3.24
64 65 3.812609 TCAAGTTTGATTGCGCAAGAGTA 59.187 39.130 28.62 11.32 32.75 2.59
65 66 4.274705 TCAAGTTTGATTGCGCAAGAGTAA 59.725 37.500 28.62 16.39 32.75 2.24
66 67 5.048782 TCAAGTTTGATTGCGCAAGAGTAAT 60.049 36.000 28.62 10.45 32.75 1.89
67 68 5.376854 AGTTTGATTGCGCAAGAGTAATT 57.623 34.783 28.62 9.63 43.02 1.40
68 69 5.393962 AGTTTGATTGCGCAAGAGTAATTC 58.606 37.500 28.62 18.55 43.02 2.17
69 70 5.182001 AGTTTGATTGCGCAAGAGTAATTCT 59.818 36.000 28.62 14.69 43.02 2.40
71 72 5.221891 TGATTGCGCAAGAGTAATTCTTC 57.778 39.130 28.62 16.40 44.34 2.87
72 73 4.094887 TGATTGCGCAAGAGTAATTCTTCC 59.905 41.667 28.62 0.00 44.34 3.46
73 74 2.356135 TGCGCAAGAGTAATTCTTCCC 58.644 47.619 8.16 0.00 44.34 3.97
74 75 1.671328 GCGCAAGAGTAATTCTTCCCC 59.329 52.381 0.30 0.00 44.34 4.81
75 76 2.681097 GCGCAAGAGTAATTCTTCCCCT 60.681 50.000 0.30 0.00 44.34 4.79
76 77 3.610911 CGCAAGAGTAATTCTTCCCCTT 58.389 45.455 0.00 0.00 44.34 3.95
77 78 3.623510 CGCAAGAGTAATTCTTCCCCTTC 59.376 47.826 0.00 0.00 44.34 3.46
78 79 3.948473 GCAAGAGTAATTCTTCCCCTTCC 59.052 47.826 0.00 0.00 44.34 3.46
79 80 4.324641 GCAAGAGTAATTCTTCCCCTTCCT 60.325 45.833 0.00 0.00 44.34 3.36
80 81 5.432645 CAAGAGTAATTCTTCCCCTTCCTC 58.567 45.833 0.00 0.00 44.34 3.71
81 82 4.041464 AGAGTAATTCTTCCCCTTCCTCC 58.959 47.826 0.00 0.00 29.61 4.30
82 83 4.041464 GAGTAATTCTTCCCCTTCCTCCT 58.959 47.826 0.00 0.00 0.00 3.69
83 84 4.449389 AGTAATTCTTCCCCTTCCTCCTT 58.551 43.478 0.00 0.00 0.00 3.36
84 85 4.475381 AGTAATTCTTCCCCTTCCTCCTTC 59.525 45.833 0.00 0.00 0.00 3.46
85 86 1.276622 TTCTTCCCCTTCCTCCTTCG 58.723 55.000 0.00 0.00 0.00 3.79
86 87 1.222113 CTTCCCCTTCCTCCTTCGC 59.778 63.158 0.00 0.00 0.00 4.70
87 88 2.258748 CTTCCCCTTCCTCCTTCGCC 62.259 65.000 0.00 0.00 0.00 5.54
88 89 4.162690 CCCCTTCCTCCTTCGCCG 62.163 72.222 0.00 0.00 0.00 6.46
89 90 4.840005 CCCTTCCTCCTTCGCCGC 62.840 72.222 0.00 0.00 0.00 6.53
90 91 4.840005 CCTTCCTCCTTCGCCGCC 62.840 72.222 0.00 0.00 0.00 6.13
91 92 3.775654 CTTCCTCCTTCGCCGCCT 61.776 66.667 0.00 0.00 0.00 5.52
92 93 4.082523 TTCCTCCTTCGCCGCCTG 62.083 66.667 0.00 0.00 0.00 4.85
113 114 2.245795 CATGAATGCTTTCGAACGCA 57.754 45.000 28.41 28.41 40.87 5.24
114 115 2.583739 CATGAATGCTTTCGAACGCAA 58.416 42.857 29.63 16.27 39.89 4.85
115 116 2.031037 TGAATGCTTTCGAACGCAAC 57.969 45.000 29.63 24.70 39.89 4.17
116 117 1.327507 GAATGCTTTCGAACGCAACC 58.672 50.000 29.63 20.48 39.89 3.77
117 118 0.665835 AATGCTTTCGAACGCAACCA 59.334 45.000 29.63 9.88 39.89 3.67
118 119 0.665835 ATGCTTTCGAACGCAACCAA 59.334 45.000 29.63 9.51 39.89 3.67
119 120 0.452184 TGCTTTCGAACGCAACCAAA 59.548 45.000 25.02 2.49 32.40 3.28
120 121 1.135373 TGCTTTCGAACGCAACCAAAA 60.135 42.857 25.02 1.76 32.40 2.44
121 122 1.254313 GCTTTCGAACGCAACCAAAAC 59.746 47.619 20.50 0.00 0.00 2.43
122 123 2.520979 CTTTCGAACGCAACCAAAACA 58.479 42.857 0.00 0.00 0.00 2.83
123 124 2.853731 TTCGAACGCAACCAAAACAT 57.146 40.000 0.00 0.00 0.00 2.71
124 125 2.853731 TCGAACGCAACCAAAACATT 57.146 40.000 0.00 0.00 0.00 2.71
125 126 2.455032 TCGAACGCAACCAAAACATTG 58.545 42.857 0.00 0.00 0.00 2.82
126 127 2.159366 TCGAACGCAACCAAAACATTGT 60.159 40.909 0.00 0.00 0.00 2.71
127 128 2.215363 CGAACGCAACCAAAACATTGTC 59.785 45.455 0.00 0.00 0.00 3.18
128 129 2.949451 ACGCAACCAAAACATTGTCA 57.051 40.000 0.00 0.00 0.00 3.58
129 130 2.808244 ACGCAACCAAAACATTGTCAG 58.192 42.857 0.00 0.00 0.00 3.51
130 131 2.165437 ACGCAACCAAAACATTGTCAGT 59.835 40.909 0.00 0.00 0.00 3.41
131 132 3.378742 ACGCAACCAAAACATTGTCAGTA 59.621 39.130 0.00 0.00 0.00 2.74
132 133 4.142359 ACGCAACCAAAACATTGTCAGTAA 60.142 37.500 0.00 0.00 0.00 2.24
133 134 4.981674 CGCAACCAAAACATTGTCAGTAAT 59.018 37.500 0.00 0.00 0.00 1.89
134 135 5.107913 CGCAACCAAAACATTGTCAGTAATG 60.108 40.000 0.00 0.00 42.38 1.90
135 136 5.982516 GCAACCAAAACATTGTCAGTAATGA 59.017 36.000 5.58 0.00 39.79 2.57
136 137 6.144402 GCAACCAAAACATTGTCAGTAATGAG 59.856 38.462 0.00 0.00 39.79 2.90
137 138 6.331369 ACCAAAACATTGTCAGTAATGAGG 57.669 37.500 0.00 0.00 39.79 3.86
138 139 5.163513 CCAAAACATTGTCAGTAATGAGGC 58.836 41.667 0.00 0.00 39.79 4.70
139 140 4.685169 AAACATTGTCAGTAATGAGGCG 57.315 40.909 0.00 0.00 39.79 5.52
140 141 3.334583 ACATTGTCAGTAATGAGGCGT 57.665 42.857 0.00 0.00 39.79 5.68
141 142 3.262420 ACATTGTCAGTAATGAGGCGTC 58.738 45.455 0.00 0.00 39.79 5.19
142 143 2.380084 TTGTCAGTAATGAGGCGTCC 57.620 50.000 3.56 0.00 0.00 4.79
143 144 0.172578 TGTCAGTAATGAGGCGTCCG 59.827 55.000 3.56 0.00 0.00 4.79
144 145 0.454600 GTCAGTAATGAGGCGTCCGA 59.545 55.000 3.56 0.00 0.00 4.55
145 146 0.738975 TCAGTAATGAGGCGTCCGAG 59.261 55.000 3.56 0.00 0.00 4.63
146 147 0.249073 CAGTAATGAGGCGTCCGAGG 60.249 60.000 3.56 0.00 0.00 4.63
147 148 0.395311 AGTAATGAGGCGTCCGAGGA 60.395 55.000 3.56 0.00 0.00 3.71
148 149 0.248949 GTAATGAGGCGTCCGAGGAC 60.249 60.000 12.07 12.07 41.40 3.85
156 157 3.179939 GTCCGAGGACGAAAGCGC 61.180 66.667 6.51 0.00 42.48 5.92
157 158 3.371063 TCCGAGGACGAAAGCGCT 61.371 61.111 2.64 2.64 42.48 5.92
158 159 2.432628 CCGAGGACGAAAGCGCTT 60.433 61.111 18.98 18.98 42.48 4.68
159 160 2.027625 CCGAGGACGAAAGCGCTTT 61.028 57.895 34.16 34.16 42.48 3.51
160 161 1.130613 CGAGGACGAAAGCGCTTTG 59.869 57.895 38.09 28.83 42.48 2.77
161 162 1.154395 GAGGACGAAAGCGCTTTGC 60.154 57.895 38.09 25.91 46.98 3.68
170 171 3.870606 GCGCTTTGCTCCTCGTTA 58.129 55.556 0.00 0.00 41.73 3.18
171 172 2.159181 GCGCTTTGCTCCTCGTTAA 58.841 52.632 0.00 0.00 41.73 2.01
172 173 0.727398 GCGCTTTGCTCCTCGTTAAT 59.273 50.000 0.00 0.00 41.73 1.40
173 174 1.529826 GCGCTTTGCTCCTCGTTAATG 60.530 52.381 0.00 0.00 41.73 1.90
174 175 1.999735 CGCTTTGCTCCTCGTTAATGA 59.000 47.619 0.00 0.00 0.00 2.57
175 176 2.029728 CGCTTTGCTCCTCGTTAATGAG 59.970 50.000 16.49 16.49 35.70 2.90
179 180 2.586258 GCTCCTCGTTAATGAGCTCA 57.414 50.000 20.79 20.79 46.19 4.26
180 181 3.104843 GCTCCTCGTTAATGAGCTCAT 57.895 47.619 23.75 23.75 46.19 2.90
181 182 3.056304 GCTCCTCGTTAATGAGCTCATC 58.944 50.000 28.83 15.79 46.19 2.92
182 183 3.648009 CTCCTCGTTAATGAGCTCATCC 58.352 50.000 28.83 17.91 35.10 3.51
183 184 3.031013 TCCTCGTTAATGAGCTCATCCA 58.969 45.455 28.83 17.08 35.10 3.41
184 185 3.643320 TCCTCGTTAATGAGCTCATCCAT 59.357 43.478 28.83 16.37 35.10 3.41
185 186 3.744942 CCTCGTTAATGAGCTCATCCATG 59.255 47.826 28.83 21.48 35.10 3.66
186 187 4.502087 CCTCGTTAATGAGCTCATCCATGA 60.502 45.833 28.83 23.95 35.10 3.07
187 188 5.022282 TCGTTAATGAGCTCATCCATGAA 57.978 39.130 28.83 14.84 36.18 2.57
188 189 5.427378 TCGTTAATGAGCTCATCCATGAAA 58.573 37.500 28.83 13.39 36.18 2.69
189 190 6.057533 TCGTTAATGAGCTCATCCATGAAAT 58.942 36.000 28.83 13.46 36.18 2.17
190 191 6.203530 TCGTTAATGAGCTCATCCATGAAATC 59.796 38.462 28.83 11.01 36.18 2.17
191 192 6.567321 CGTTAATGAGCTCATCCATGAAATCC 60.567 42.308 28.83 7.70 36.18 3.01
192 193 3.219176 TGAGCTCATCCATGAAATCCC 57.781 47.619 13.74 0.00 36.18 3.85
193 194 2.149578 GAGCTCATCCATGAAATCCCG 58.850 52.381 9.40 0.00 36.18 5.14
194 195 0.595095 GCTCATCCATGAAATCCCGC 59.405 55.000 0.00 0.00 36.18 6.13
195 196 1.971481 CTCATCCATGAAATCCCGCA 58.029 50.000 0.00 0.00 36.18 5.69
196 197 2.511659 CTCATCCATGAAATCCCGCAT 58.488 47.619 0.00 0.00 36.18 4.73
197 198 2.486982 CTCATCCATGAAATCCCGCATC 59.513 50.000 0.00 0.00 36.18 3.91
198 199 1.542915 CATCCATGAAATCCCGCATCC 59.457 52.381 0.00 0.00 0.00 3.51
199 200 0.846015 TCCATGAAATCCCGCATCCT 59.154 50.000 0.00 0.00 0.00 3.24
200 201 2.054021 TCCATGAAATCCCGCATCCTA 58.946 47.619 0.00 0.00 0.00 2.94
201 202 2.644299 TCCATGAAATCCCGCATCCTAT 59.356 45.455 0.00 0.00 0.00 2.57
202 203 3.074390 TCCATGAAATCCCGCATCCTATT 59.926 43.478 0.00 0.00 0.00 1.73
203 204 3.192001 CCATGAAATCCCGCATCCTATTG 59.808 47.826 0.00 0.00 0.00 1.90
204 205 3.855255 TGAAATCCCGCATCCTATTGA 57.145 42.857 0.00 0.00 0.00 2.57
205 206 4.371624 TGAAATCCCGCATCCTATTGAT 57.628 40.909 0.00 0.00 0.00 2.57
218 219 5.955961 TCCTATTGATGATGACCTTGACA 57.044 39.130 0.00 0.00 0.00 3.58
219 220 5.922053 TCCTATTGATGATGACCTTGACAG 58.078 41.667 0.00 0.00 0.00 3.51
220 221 4.514441 CCTATTGATGATGACCTTGACAGC 59.486 45.833 0.00 0.00 0.00 4.40
221 222 2.408271 TGATGATGACCTTGACAGCC 57.592 50.000 0.00 0.00 0.00 4.85
222 223 1.629861 TGATGATGACCTTGACAGCCA 59.370 47.619 0.00 0.00 0.00 4.75
223 224 2.040145 TGATGATGACCTTGACAGCCAA 59.960 45.455 0.00 0.00 0.00 4.52
224 225 2.885135 TGATGACCTTGACAGCCAAT 57.115 45.000 0.00 0.00 33.68 3.16
225 226 3.159213 TGATGACCTTGACAGCCAATT 57.841 42.857 0.00 0.00 33.68 2.32
226 227 3.499338 TGATGACCTTGACAGCCAATTT 58.501 40.909 0.00 0.00 33.68 1.82
227 228 3.256383 TGATGACCTTGACAGCCAATTTG 59.744 43.478 0.00 0.00 33.68 2.32
228 229 2.665165 TGACCTTGACAGCCAATTTGT 58.335 42.857 0.00 0.00 33.68 2.83
229 230 3.826524 TGACCTTGACAGCCAATTTGTA 58.173 40.909 0.00 0.00 33.68 2.41
230 231 3.568007 TGACCTTGACAGCCAATTTGTAC 59.432 43.478 0.00 0.00 33.68 2.90
231 232 3.561143 ACCTTGACAGCCAATTTGTACA 58.439 40.909 0.00 0.00 33.68 2.90
232 233 3.569701 ACCTTGACAGCCAATTTGTACAG 59.430 43.478 0.00 0.00 33.68 2.74
233 234 3.820467 CCTTGACAGCCAATTTGTACAGA 59.180 43.478 0.00 0.00 33.68 3.41
234 235 4.278170 CCTTGACAGCCAATTTGTACAGAA 59.722 41.667 0.00 0.00 33.68 3.02
235 236 4.829064 TGACAGCCAATTTGTACAGAAC 57.171 40.909 0.00 0.00 0.00 3.01
236 237 3.568007 TGACAGCCAATTTGTACAGAACC 59.432 43.478 0.00 0.00 0.00 3.62
237 238 3.561143 ACAGCCAATTTGTACAGAACCA 58.439 40.909 0.00 0.00 0.00 3.67
238 239 3.569701 ACAGCCAATTTGTACAGAACCAG 59.430 43.478 0.00 0.00 0.00 4.00
239 240 3.057315 CAGCCAATTTGTACAGAACCAGG 60.057 47.826 0.00 0.00 0.00 4.45
240 241 2.352715 GCCAATTTGTACAGAACCAGGC 60.353 50.000 9.36 9.36 0.00 4.85
241 242 2.890311 CCAATTTGTACAGAACCAGGCA 59.110 45.455 0.00 0.00 0.00 4.75
242 243 3.511146 CCAATTTGTACAGAACCAGGCAT 59.489 43.478 0.00 0.00 0.00 4.40
243 244 4.704540 CCAATTTGTACAGAACCAGGCATA 59.295 41.667 0.00 0.00 0.00 3.14
244 245 5.184864 CCAATTTGTACAGAACCAGGCATAA 59.815 40.000 0.00 0.00 0.00 1.90
245 246 5.897377 ATTTGTACAGAACCAGGCATAAC 57.103 39.130 0.00 0.00 0.00 1.89
246 247 2.967362 TGTACAGAACCAGGCATAACG 58.033 47.619 0.00 0.00 0.00 3.18
247 248 2.563620 TGTACAGAACCAGGCATAACGA 59.436 45.455 0.00 0.00 0.00 3.85
248 249 2.386661 ACAGAACCAGGCATAACGAG 57.613 50.000 0.00 0.00 0.00 4.18
249 250 1.899814 ACAGAACCAGGCATAACGAGA 59.100 47.619 0.00 0.00 0.00 4.04
250 251 2.501723 ACAGAACCAGGCATAACGAGAT 59.498 45.455 0.00 0.00 0.00 2.75
251 252 3.704566 ACAGAACCAGGCATAACGAGATA 59.295 43.478 0.00 0.00 0.00 1.98
252 253 4.202161 ACAGAACCAGGCATAACGAGATAG 60.202 45.833 0.00 0.00 0.00 2.08
253 254 3.322254 AGAACCAGGCATAACGAGATAGG 59.678 47.826 0.00 0.00 0.00 2.57
254 255 2.679082 ACCAGGCATAACGAGATAGGT 58.321 47.619 0.00 0.00 0.00 3.08
255 256 2.628657 ACCAGGCATAACGAGATAGGTC 59.371 50.000 0.00 0.00 0.00 3.85
256 257 2.351835 CCAGGCATAACGAGATAGGTCG 60.352 54.545 0.00 0.00 45.76 4.79
257 258 2.552743 CAGGCATAACGAGATAGGTCGA 59.447 50.000 0.00 0.00 42.85 4.20
258 259 3.191581 CAGGCATAACGAGATAGGTCGAT 59.808 47.826 0.00 0.00 42.85 3.59
259 260 4.395231 CAGGCATAACGAGATAGGTCGATA 59.605 45.833 0.00 0.00 42.85 2.92
260 261 5.008331 AGGCATAACGAGATAGGTCGATAA 58.992 41.667 0.00 0.00 42.85 1.75
261 262 5.652891 AGGCATAACGAGATAGGTCGATAAT 59.347 40.000 0.00 0.00 42.85 1.28
262 263 5.744345 GGCATAACGAGATAGGTCGATAATG 59.256 44.000 0.00 2.48 42.85 1.90
263 264 6.323266 GCATAACGAGATAGGTCGATAATGT 58.677 40.000 0.00 0.00 42.85 2.71
264 265 6.251589 GCATAACGAGATAGGTCGATAATGTG 59.748 42.308 0.00 0.00 42.85 3.21
265 266 7.527457 CATAACGAGATAGGTCGATAATGTGA 58.473 38.462 0.00 0.00 42.85 3.58
266 267 5.614923 ACGAGATAGGTCGATAATGTGAG 57.385 43.478 0.00 0.00 42.85 3.51
267 268 5.306394 ACGAGATAGGTCGATAATGTGAGA 58.694 41.667 0.00 0.00 42.85 3.27
268 269 5.941058 ACGAGATAGGTCGATAATGTGAGAT 59.059 40.000 0.00 0.00 42.85 2.75
269 270 6.128145 ACGAGATAGGTCGATAATGTGAGATG 60.128 42.308 0.00 0.00 42.85 2.90
270 271 6.522625 AGATAGGTCGATAATGTGAGATGG 57.477 41.667 0.00 0.00 0.00 3.51
271 272 6.013379 AGATAGGTCGATAATGTGAGATGGT 58.987 40.000 0.00 0.00 0.00 3.55
272 273 6.495181 AGATAGGTCGATAATGTGAGATGGTT 59.505 38.462 0.00 0.00 0.00 3.67
273 274 5.359194 AGGTCGATAATGTGAGATGGTTT 57.641 39.130 0.00 0.00 0.00 3.27
274 275 5.118990 AGGTCGATAATGTGAGATGGTTTG 58.881 41.667 0.00 0.00 0.00 2.93
275 276 4.876107 GGTCGATAATGTGAGATGGTTTGT 59.124 41.667 0.00 0.00 0.00 2.83
276 277 5.220662 GGTCGATAATGTGAGATGGTTTGTG 60.221 44.000 0.00 0.00 0.00 3.33
277 278 4.875536 TCGATAATGTGAGATGGTTTGTGG 59.124 41.667 0.00 0.00 0.00 4.17
278 279 4.035558 CGATAATGTGAGATGGTTTGTGGG 59.964 45.833 0.00 0.00 0.00 4.61
279 280 2.978156 ATGTGAGATGGTTTGTGGGT 57.022 45.000 0.00 0.00 0.00 4.51
280 281 2.746279 TGTGAGATGGTTTGTGGGTT 57.254 45.000 0.00 0.00 0.00 4.11
281 282 3.866703 TGTGAGATGGTTTGTGGGTTA 57.133 42.857 0.00 0.00 0.00 2.85
282 283 3.482436 TGTGAGATGGTTTGTGGGTTAC 58.518 45.455 0.00 0.00 0.00 2.50
283 284 2.482721 GTGAGATGGTTTGTGGGTTACG 59.517 50.000 0.00 0.00 0.00 3.18
284 285 1.467342 GAGATGGTTTGTGGGTTACGC 59.533 52.381 0.00 0.00 0.00 4.42
285 286 1.202830 AGATGGTTTGTGGGTTACGCA 60.203 47.619 0.00 0.00 37.93 5.24
286 287 0.955905 ATGGTTTGTGGGTTACGCAC 59.044 50.000 22.87 22.87 45.53 5.34
287 288 1.102222 TGGTTTGTGGGTTACGCACC 61.102 55.000 25.69 13.54 44.87 5.01
288 289 0.820482 GGTTTGTGGGTTACGCACCT 60.820 55.000 25.69 0.00 46.38 4.00
289 290 1.026584 GTTTGTGGGTTACGCACCTT 58.973 50.000 25.69 0.00 46.38 3.50
290 291 2.220313 GTTTGTGGGTTACGCACCTTA 58.780 47.619 25.69 11.39 46.38 2.69
291 292 2.172851 TTGTGGGTTACGCACCTTAG 57.827 50.000 25.69 0.00 46.38 2.18
292 293 0.322322 TGTGGGTTACGCACCTTAGG 59.678 55.000 25.69 0.00 46.38 2.69
293 294 0.392060 GTGGGTTACGCACCTTAGGG 60.392 60.000 19.79 0.00 46.38 3.53
294 295 0.544833 TGGGTTACGCACCTTAGGGA 60.545 55.000 2.32 0.00 46.38 4.20
295 296 0.614812 GGGTTACGCACCTTAGGGAA 59.385 55.000 2.32 0.00 46.38 3.97
327 328 3.238108 ACTAGCAGAAGAACATGGACG 57.762 47.619 0.00 0.00 0.00 4.79
362 363 6.972722 AGGCAATTATCTTCTCTCGTACTAC 58.027 40.000 0.00 0.00 0.00 2.73
363 364 6.773685 AGGCAATTATCTTCTCTCGTACTACT 59.226 38.462 0.00 0.00 0.00 2.57
364 365 7.937942 AGGCAATTATCTTCTCTCGTACTACTA 59.062 37.037 0.00 0.00 0.00 1.82
376 377 8.025445 TCTCTCGTACTACTAAAACATTCAACC 58.975 37.037 0.00 0.00 0.00 3.77
413 418 1.770294 ATGTTGGGTTTTCACGTGGT 58.230 45.000 17.00 0.00 0.00 4.16
420 425 1.329599 GGTTTTCACGTGGTCTGACAC 59.670 52.381 17.00 5.37 37.99 3.67
446 451 3.376859 CCACTAGTTAATTTGCATCGCCA 59.623 43.478 0.00 0.00 0.00 5.69
487 492 2.658593 GACACGGAGCGCGCATAT 60.659 61.111 35.10 13.58 0.00 1.78
488 493 2.932083 GACACGGAGCGCGCATATG 61.932 63.158 35.10 25.68 0.00 1.78
489 494 3.705638 CACGGAGCGCGCATATGG 61.706 66.667 35.10 19.00 0.00 2.74
619 624 2.285368 TCCCGTGGCATCTCCCTT 60.285 61.111 0.00 0.00 0.00 3.95
646 651 2.571548 GTTCCGTACGAGGGGAAGA 58.428 57.895 18.76 0.00 42.68 2.87
648 653 0.682209 TTCCGTACGAGGGGAAGAGG 60.682 60.000 18.76 0.00 37.40 3.69
649 654 1.077212 CCGTACGAGGGGAAGAGGA 60.077 63.158 18.76 0.00 0.00 3.71
657 662 0.916845 AGGGGAAGAGGAAGGAAGGC 60.917 60.000 0.00 0.00 0.00 4.35
659 664 1.222113 GGAAGAGGAAGGAAGGCGG 59.778 63.158 0.00 0.00 0.00 6.13
674 679 1.526225 GCGGGAATAGTCAAGCCCC 60.526 63.158 0.00 0.00 37.27 5.80
675 680 1.148498 CGGGAATAGTCAAGCCCCC 59.852 63.158 0.00 0.00 37.27 5.40
699 708 0.664767 GCTCAACGACTCGTCTGCTT 60.665 55.000 4.17 0.00 39.99 3.91
703 718 1.453524 CAACGACTCGTCTGCTTCTTG 59.546 52.381 4.17 0.00 39.99 3.02
706 721 2.128035 CGACTCGTCTGCTTCTTGTTT 58.872 47.619 0.00 0.00 0.00 2.83
707 722 2.097202 CGACTCGTCTGCTTCTTGTTTG 60.097 50.000 0.00 0.00 0.00 2.93
708 723 1.599542 ACTCGTCTGCTTCTTGTTTGC 59.400 47.619 0.00 0.00 0.00 3.68
709 724 1.869767 CTCGTCTGCTTCTTGTTTGCT 59.130 47.619 0.00 0.00 0.00 3.91
710 725 3.059884 CTCGTCTGCTTCTTGTTTGCTA 58.940 45.455 0.00 0.00 0.00 3.49
786 819 1.010419 CGATTCCGTTCCGTTCCGTT 61.010 55.000 0.00 0.00 0.00 4.44
789 822 2.025767 TTCCGTTCCGTTCCGTTCCA 62.026 55.000 0.00 0.00 0.00 3.53
790 823 2.312436 CCGTTCCGTTCCGTTCCAC 61.312 63.158 0.00 0.00 0.00 4.02
792 825 1.227615 GTTCCGTTCCGTTCCACCA 60.228 57.895 0.00 0.00 0.00 4.17
793 826 1.227615 TTCCGTTCCGTTCCACCAC 60.228 57.895 0.00 0.00 0.00 4.16
794 827 2.663423 TTCCGTTCCGTTCCACCACC 62.663 60.000 0.00 0.00 0.00 4.61
795 828 2.109387 CGTTCCGTTCCACCACCA 59.891 61.111 0.00 0.00 0.00 4.17
796 829 2.248835 CGTTCCGTTCCACCACCAC 61.249 63.158 0.00 0.00 0.00 4.16
797 830 2.109387 TTCCGTTCCACCACCACG 59.891 61.111 0.00 0.00 0.00 4.94
801 834 4.572571 GTTCCACCACCACGGCCA 62.573 66.667 2.24 0.00 39.03 5.36
802 835 3.575247 TTCCACCACCACGGCCAT 61.575 61.111 2.24 0.00 39.03 4.40
803 836 3.140073 TTCCACCACCACGGCCATT 62.140 57.895 2.24 0.00 39.03 3.16
804 837 1.780107 TTCCACCACCACGGCCATTA 61.780 55.000 2.24 0.00 39.03 1.90
852 890 1.315690 TCGTCGTCAACCAGTCTCTT 58.684 50.000 0.00 0.00 0.00 2.85
856 894 2.554893 GTCGTCAACCAGTCTCTTCTCT 59.445 50.000 0.00 0.00 0.00 3.10
881 919 0.251634 CTCCTCTTCAACTCCCCAGC 59.748 60.000 0.00 0.00 0.00 4.85
890 928 3.406200 CTCCCCAGCCCCTCACAG 61.406 72.222 0.00 0.00 0.00 3.66
894 932 4.463879 CCAGCCCCTCACAGCTCG 62.464 72.222 0.00 0.00 37.18 5.03
911 962 2.294074 CTCGACCAAGAAACCAACCAA 58.706 47.619 0.00 0.00 0.00 3.67
921 972 0.527565 AACCAACCAATCTGCATCGC 59.472 50.000 0.00 0.00 0.00 4.58
922 973 1.315257 ACCAACCAATCTGCATCGCC 61.315 55.000 0.00 0.00 0.00 5.54
924 975 0.527113 CAACCAATCTGCATCGCCAA 59.473 50.000 0.00 0.00 0.00 4.52
933 984 0.673333 TGCATCGCCAAGATCGTTGT 60.673 50.000 0.00 0.00 37.52 3.32
937 988 1.014044 TCGCCAAGATCGTTGTCAGC 61.014 55.000 4.81 0.00 0.00 4.26
943 994 2.270275 AGATCGTTGTCAGCTCTTCG 57.730 50.000 0.00 0.00 0.00 3.79
944 995 1.813178 AGATCGTTGTCAGCTCTTCGA 59.187 47.619 0.00 0.00 0.00 3.71
1047 1105 4.742201 TTCTGCTGCGTCGGAGGC 62.742 66.667 15.95 15.31 0.00 4.70
1227 1291 2.101380 GACCTCTCGCTGACGCTC 59.899 66.667 0.00 0.00 39.84 5.03
1647 1718 1.452953 CGGATGCTGGCCTACGAGTA 61.453 60.000 3.32 0.00 0.00 2.59
1836 1912 2.124293 ACTCGGTGAGTCAACTGCA 58.876 52.632 6.61 0.00 38.71 4.41
1841 1917 1.071605 GGTGAGTCAACTGCACGATC 58.928 55.000 0.00 0.00 33.48 3.69
1864 1940 5.123820 TCAATCGAACCATCTCACCATTTTC 59.876 40.000 0.00 0.00 0.00 2.29
1865 1941 4.286297 TCGAACCATCTCACCATTTTCT 57.714 40.909 0.00 0.00 0.00 2.52
1868 1944 4.034510 CGAACCATCTCACCATTTTCTAGC 59.965 45.833 0.00 0.00 0.00 3.42
1884 1960 1.000955 CTAGCCTTGACCACGAGTTGT 59.999 52.381 0.00 0.00 0.00 3.32
1981 2138 4.260355 CCAGCGGCGCCATGATTG 62.260 66.667 30.40 18.79 0.00 2.67
1993 2150 3.565307 GCCATGATTGGGACTTGGAATA 58.435 45.455 0.00 0.00 43.84 1.75
2017 2174 0.826062 GGTTCCTGGATGCCCATTTG 59.174 55.000 0.00 0.00 42.59 2.32
2147 2304 6.129009 ACGATAGAAACGTTGTCATGTTACAC 60.129 38.462 0.00 0.00 41.18 2.90
2341 2510 1.423584 ACATCATGACGGGGCATCTA 58.576 50.000 0.00 0.00 0.00 1.98
2383 2552 3.883744 CTTCGGCGTGGTGCTCCTT 62.884 63.158 6.85 0.00 45.43 3.36
2461 2630 1.656587 TGGTTGACTATGCCAGACCT 58.343 50.000 0.00 0.00 0.00 3.85
2641 2810 3.596101 AGAGCCCATACTGAAGATGGAT 58.404 45.455 3.18 0.00 45.89 3.41
2697 2866 5.913514 CAGTCGTAGTGGAAAATACCGATAG 59.086 44.000 0.00 0.00 0.00 2.08
2710 2879 7.521509 AAATACCGATAGAAACGTTGAGAAG 57.478 36.000 0.00 0.00 39.76 2.85
2715 2884 5.862323 CCGATAGAAACGTTGAGAAGAAAGA 59.138 40.000 0.00 0.00 39.76 2.52
2823 2992 3.492482 CGGCAAAAGTTCCCAAACTCAAT 60.492 43.478 0.00 0.00 45.07 2.57
2962 3131 5.265191 TCATCACAGAGCTTAGTTAGGACT 58.735 41.667 0.00 0.00 39.97 3.85
3019 3188 8.874156 AGATTGTACATATTTGAGCTAGATCCA 58.126 33.333 5.36 0.00 0.00 3.41
3020 3189 9.494271 GATTGTACATATTTGAGCTAGATCCAA 57.506 33.333 5.36 0.59 0.00 3.53
3027 3196 2.260822 TGAGCTAGATCCAATAGGGGC 58.739 52.381 5.36 0.00 37.22 5.80
3042 3211 0.533308 GGGGCGTAACACAAGTCACA 60.533 55.000 0.00 0.00 0.00 3.58
3072 3297 6.336842 CAAATTGGTTTGGTTGAGAGAGAT 57.663 37.500 0.00 0.00 40.78 2.75
3133 3358 9.896645 TTATGAGAAATCTTGATAGTGAAGCTT 57.103 29.630 0.00 0.00 0.00 3.74
3232 3458 8.607441 AATAGCAAGCGAGAATGATAAATGTA 57.393 30.769 0.00 0.00 0.00 2.29
3288 3514 3.756082 AAAGGTTGCTCCCATAATCCA 57.244 42.857 0.00 0.00 36.75 3.41
3303 3529 0.242017 ATCCAGTTTCTGCGCTTTGC 59.758 50.000 9.73 0.00 46.70 3.68
3304 3530 0.819259 TCCAGTTTCTGCGCTTTGCT 60.819 50.000 9.73 0.00 46.63 3.91
3347 3574 1.895131 ACCTCATGTCATTTTGGTGGC 59.105 47.619 0.00 0.00 0.00 5.01
3357 3584 1.412079 TTTTGGTGGCATTGTGAGCT 58.588 45.000 0.00 0.00 0.00 4.09
3373 3600 5.454966 TGTGAGCTTCTAGTATACCATCCA 58.545 41.667 0.00 0.00 0.00 3.41
3403 3630 5.918608 TGAGAAGTCTATGGATAAAGCCAC 58.081 41.667 0.00 0.00 41.56 5.01
3427 3654 7.450323 CACAAACCTAAAAGGGATTCTTTCCTA 59.550 37.037 0.00 0.00 44.30 2.94
3501 3728 7.864108 TTGACTATTAATGTGGATGTTGAGG 57.136 36.000 0.00 0.00 0.00 3.86
3572 3799 3.336509 TTCAAGAATTTGGGGGTTCCA 57.663 42.857 0.00 0.00 45.43 3.53
3686 3913 3.818295 TTATAGGGGCAAACACACCTT 57.182 42.857 0.00 0.00 34.59 3.50
3689 3916 1.578897 AGGGGCAAACACACCTTTTT 58.421 45.000 0.00 0.00 0.00 1.94
3765 3992 8.806429 AATTTCCAAAATGGGTTATCAATTCC 57.194 30.769 0.00 0.00 38.32 3.01
3770 3997 8.703743 TCCAAAATGGGTTATCAATTCCATTAG 58.296 33.333 7.13 4.41 45.88 1.73
3784 4011 8.058235 TCAATTCCATTAGTCCCAAATGTATCA 58.942 33.333 0.00 0.00 33.37 2.15
3785 4012 8.863086 CAATTCCATTAGTCCCAAATGTATCAT 58.137 33.333 0.00 0.00 33.37 2.45
3786 4013 9.438163 AATTCCATTAGTCCCAAATGTATCATT 57.562 29.630 0.00 0.00 33.37 2.57
3787 4014 8.837099 TTCCATTAGTCCCAAATGTATCATTT 57.163 30.769 2.42 2.42 33.37 2.32
3788 4015 8.463930 TCCATTAGTCCCAAATGTATCATTTC 57.536 34.615 4.97 0.00 33.37 2.17
3789 4016 8.281531 TCCATTAGTCCCAAATGTATCATTTCT 58.718 33.333 4.97 3.18 33.37 2.52
3790 4017 8.917088 CCATTAGTCCCAAATGTATCATTTCTT 58.083 33.333 4.97 0.00 33.37 2.52
3794 4021 7.614494 AGTCCCAAATGTATCATTTCTTTTGG 58.386 34.615 12.46 12.46 42.85 3.28
3808 4035 8.340757 TCATTTCTTTTGGGGTAATATAGGTGT 58.659 33.333 0.00 0.00 0.00 4.16
3829 4056 1.676006 CTCCCGTCAATACCATTTGGC 59.324 52.381 0.00 0.00 39.32 4.52
3830 4057 1.283613 TCCCGTCAATACCATTTGGCT 59.716 47.619 0.00 0.00 39.32 4.75
3831 4058 1.405105 CCCGTCAATACCATTTGGCTG 59.595 52.381 0.00 0.00 39.32 4.85
3832 4059 2.364632 CCGTCAATACCATTTGGCTGA 58.635 47.619 0.00 0.00 39.32 4.26
3833 4060 2.097466 CCGTCAATACCATTTGGCTGAC 59.903 50.000 13.27 13.27 38.34 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.941263 CCGAGTTGAATGGAGTTATTTGGA 59.059 41.667 0.00 0.00 0.00 3.53
1 2 4.700213 ACCGAGTTGAATGGAGTTATTTGG 59.300 41.667 0.00 0.00 0.00 3.28
2 3 5.445939 CGACCGAGTTGAATGGAGTTATTTG 60.446 44.000 0.00 0.00 0.00 2.32
3 4 4.630069 CGACCGAGTTGAATGGAGTTATTT 59.370 41.667 0.00 0.00 0.00 1.40
4 5 4.181578 CGACCGAGTTGAATGGAGTTATT 58.818 43.478 0.00 0.00 0.00 1.40
5 6 3.194968 ACGACCGAGTTGAATGGAGTTAT 59.805 43.478 0.00 0.00 0.00 1.89
6 7 2.559668 ACGACCGAGTTGAATGGAGTTA 59.440 45.455 0.00 0.00 0.00 2.24
7 8 1.343465 ACGACCGAGTTGAATGGAGTT 59.657 47.619 0.00 0.00 0.00 3.01
8 9 0.966920 ACGACCGAGTTGAATGGAGT 59.033 50.000 0.00 0.00 0.00 3.85
9 10 2.933495 TACGACCGAGTTGAATGGAG 57.067 50.000 0.00 0.00 0.00 3.86
10 11 2.559668 ACTTACGACCGAGTTGAATGGA 59.440 45.455 0.00 0.00 0.00 3.41
11 12 2.955614 ACTTACGACCGAGTTGAATGG 58.044 47.619 0.00 0.00 0.00 3.16
12 13 4.985044 AAACTTACGACCGAGTTGAATG 57.015 40.909 0.00 0.00 36.31 2.67
13 14 5.051816 TGAAAACTTACGACCGAGTTGAAT 58.948 37.500 0.00 0.00 36.31 2.57
14 15 4.431809 TGAAAACTTACGACCGAGTTGAA 58.568 39.130 0.00 0.00 36.31 2.69
15 16 4.044336 TGAAAACTTACGACCGAGTTGA 57.956 40.909 0.00 0.00 36.31 3.18
16 17 4.446385 TGATGAAAACTTACGACCGAGTTG 59.554 41.667 0.00 0.00 36.31 3.16
17 18 4.624015 TGATGAAAACTTACGACCGAGTT 58.376 39.130 0.00 0.00 37.69 3.01
18 19 4.247267 TGATGAAAACTTACGACCGAGT 57.753 40.909 0.00 0.00 0.00 4.18
19 20 6.695713 TGATATGATGAAAACTTACGACCGAG 59.304 38.462 0.00 0.00 0.00 4.63
20 21 6.566141 TGATATGATGAAAACTTACGACCGA 58.434 36.000 0.00 0.00 0.00 4.69
21 22 6.822073 TGATATGATGAAAACTTACGACCG 57.178 37.500 0.00 0.00 0.00 4.79
22 23 8.197988 ACTTGATATGATGAAAACTTACGACC 57.802 34.615 0.00 0.00 0.00 4.79
29 30 9.362539 GCAATCAAACTTGATATGATGAAAACT 57.637 29.630 5.40 0.00 46.60 2.66
30 31 8.316046 CGCAATCAAACTTGATATGATGAAAAC 58.684 33.333 5.40 0.00 46.60 2.43
31 32 7.009448 GCGCAATCAAACTTGATATGATGAAAA 59.991 33.333 0.30 0.00 46.60 2.29
32 33 6.473131 GCGCAATCAAACTTGATATGATGAAA 59.527 34.615 0.30 0.00 46.60 2.69
33 34 5.972973 GCGCAATCAAACTTGATATGATGAA 59.027 36.000 0.30 0.00 46.60 2.57
34 35 5.066246 TGCGCAATCAAACTTGATATGATGA 59.934 36.000 8.16 0.00 46.60 2.92
35 36 5.275494 TGCGCAATCAAACTTGATATGATG 58.725 37.500 8.16 2.18 46.60 3.07
36 37 5.503662 TGCGCAATCAAACTTGATATGAT 57.496 34.783 8.16 0.00 46.60 2.45
37 38 4.961435 TGCGCAATCAAACTTGATATGA 57.039 36.364 8.16 0.00 46.60 2.15
38 39 5.334319 TCTTGCGCAATCAAACTTGATATG 58.666 37.500 25.26 6.60 46.60 1.78
39 40 5.124457 ACTCTTGCGCAATCAAACTTGATAT 59.876 36.000 25.26 3.34 46.60 1.63
40 41 4.455533 ACTCTTGCGCAATCAAACTTGATA 59.544 37.500 25.26 0.00 46.60 2.15
42 43 2.618241 ACTCTTGCGCAATCAAACTTGA 59.382 40.909 25.26 13.46 42.14 3.02
43 44 3.004024 ACTCTTGCGCAATCAAACTTG 57.996 42.857 25.26 9.44 0.00 3.16
44 45 4.829064 TTACTCTTGCGCAATCAAACTT 57.171 36.364 25.26 6.53 0.00 2.66
45 46 5.182001 AGAATTACTCTTGCGCAATCAAACT 59.818 36.000 25.26 12.35 0.00 2.66
46 47 5.393962 AGAATTACTCTTGCGCAATCAAAC 58.606 37.500 25.26 10.36 0.00 2.93
47 48 5.627499 AGAATTACTCTTGCGCAATCAAA 57.373 34.783 25.26 15.48 0.00 2.69
48 49 5.391950 GGAAGAATTACTCTTGCGCAATCAA 60.392 40.000 25.26 14.82 44.82 2.57
49 50 4.094887 GGAAGAATTACTCTTGCGCAATCA 59.905 41.667 25.26 12.49 44.82 2.57
50 51 4.592179 GGAAGAATTACTCTTGCGCAATC 58.408 43.478 25.26 16.12 44.82 2.67
51 52 4.622701 GGAAGAATTACTCTTGCGCAAT 57.377 40.909 25.26 11.95 44.82 3.56
52 53 6.626279 AGGGGAAGAATTACTCTTGCGCAA 62.626 45.833 23.48 23.48 34.63 4.85
53 54 5.204706 AGGGGAAGAATTACTCTTGCGCA 62.205 47.826 19.82 5.66 34.63 6.09
54 55 2.681097 AGGGGAAGAATTACTCTTGCGC 60.681 50.000 12.96 12.96 34.63 6.09
55 56 3.268023 AGGGGAAGAATTACTCTTGCG 57.732 47.619 0.75 0.00 34.63 4.85
59 60 4.041464 GGAGGAAGGGGAAGAATTACTCT 58.959 47.826 0.00 0.00 46.71 3.24
60 61 4.041464 AGGAGGAAGGGGAAGAATTACTC 58.959 47.826 0.00 0.00 33.82 2.59
61 62 4.095616 AGGAGGAAGGGGAAGAATTACT 57.904 45.455 0.00 0.00 0.00 2.24
62 63 4.683671 CGAAGGAGGAAGGGGAAGAATTAC 60.684 50.000 0.00 0.00 0.00 1.89
63 64 3.454812 CGAAGGAGGAAGGGGAAGAATTA 59.545 47.826 0.00 0.00 0.00 1.40
64 65 2.239907 CGAAGGAGGAAGGGGAAGAATT 59.760 50.000 0.00 0.00 0.00 2.17
65 66 1.840635 CGAAGGAGGAAGGGGAAGAAT 59.159 52.381 0.00 0.00 0.00 2.40
66 67 1.276622 CGAAGGAGGAAGGGGAAGAA 58.723 55.000 0.00 0.00 0.00 2.52
67 68 1.265454 GCGAAGGAGGAAGGGGAAGA 61.265 60.000 0.00 0.00 0.00 2.87
68 69 1.222113 GCGAAGGAGGAAGGGGAAG 59.778 63.158 0.00 0.00 0.00 3.46
69 70 2.298661 GGCGAAGGAGGAAGGGGAA 61.299 63.158 0.00 0.00 0.00 3.97
70 71 2.687566 GGCGAAGGAGGAAGGGGA 60.688 66.667 0.00 0.00 0.00 4.81
71 72 4.162690 CGGCGAAGGAGGAAGGGG 62.163 72.222 0.00 0.00 0.00 4.79
72 73 4.840005 GCGGCGAAGGAGGAAGGG 62.840 72.222 12.98 0.00 0.00 3.95
73 74 4.840005 GGCGGCGAAGGAGGAAGG 62.840 72.222 12.98 0.00 0.00 3.46
74 75 3.775654 AGGCGGCGAAGGAGGAAG 61.776 66.667 12.98 0.00 0.00 3.46
75 76 4.082523 CAGGCGGCGAAGGAGGAA 62.083 66.667 12.98 0.00 0.00 3.36
94 95 2.245795 TGCGTTCGAAAGCATTCATG 57.754 45.000 30.55 0.00 38.45 3.07
95 96 2.584791 GTTGCGTTCGAAAGCATTCAT 58.415 42.857 33.50 0.00 42.66 2.57
96 97 1.334599 GGTTGCGTTCGAAAGCATTCA 60.335 47.619 33.50 19.77 42.66 2.57
97 98 1.327507 GGTTGCGTTCGAAAGCATTC 58.672 50.000 33.50 27.27 42.66 2.67
98 99 0.665835 TGGTTGCGTTCGAAAGCATT 59.334 45.000 33.50 0.00 42.66 3.56
99 100 0.665835 TTGGTTGCGTTCGAAAGCAT 59.334 45.000 33.50 0.00 42.66 3.79
100 101 0.452184 TTTGGTTGCGTTCGAAAGCA 59.548 45.000 30.55 30.55 41.51 3.91
101 102 1.254313 GTTTTGGTTGCGTTCGAAAGC 59.746 47.619 26.20 26.20 0.00 3.51
102 103 2.520979 TGTTTTGGTTGCGTTCGAAAG 58.479 42.857 6.73 6.73 0.00 2.62
103 104 2.631418 TGTTTTGGTTGCGTTCGAAA 57.369 40.000 0.00 0.00 0.00 3.46
104 105 2.853731 ATGTTTTGGTTGCGTTCGAA 57.146 40.000 0.00 0.00 0.00 3.71
105 106 2.159366 ACAATGTTTTGGTTGCGTTCGA 60.159 40.909 0.00 0.00 37.15 3.71
106 107 2.189342 ACAATGTTTTGGTTGCGTTCG 58.811 42.857 0.00 0.00 37.15 3.95
107 108 3.182967 TGACAATGTTTTGGTTGCGTTC 58.817 40.909 0.00 0.00 37.15 3.95
108 109 3.186119 CTGACAATGTTTTGGTTGCGTT 58.814 40.909 0.00 0.00 37.15 4.84
109 110 2.165437 ACTGACAATGTTTTGGTTGCGT 59.835 40.909 0.00 0.00 37.15 5.24
110 111 2.808244 ACTGACAATGTTTTGGTTGCG 58.192 42.857 0.00 0.00 37.15 4.85
111 112 5.982516 TCATTACTGACAATGTTTTGGTTGC 59.017 36.000 0.00 0.00 37.23 4.17
112 113 6.642131 CCTCATTACTGACAATGTTTTGGTTG 59.358 38.462 0.00 0.00 37.23 3.77
113 114 6.738453 GCCTCATTACTGACAATGTTTTGGTT 60.738 38.462 0.00 0.00 37.23 3.67
114 115 5.278957 GCCTCATTACTGACAATGTTTTGGT 60.279 40.000 0.00 0.00 37.23 3.67
115 116 5.163513 GCCTCATTACTGACAATGTTTTGG 58.836 41.667 0.00 0.00 37.23 3.28
116 117 4.853196 CGCCTCATTACTGACAATGTTTTG 59.147 41.667 0.00 0.00 37.23 2.44
117 118 4.518970 ACGCCTCATTACTGACAATGTTTT 59.481 37.500 0.00 0.00 37.23 2.43
118 119 4.072131 ACGCCTCATTACTGACAATGTTT 58.928 39.130 0.00 0.00 37.23 2.83
119 120 3.674997 ACGCCTCATTACTGACAATGTT 58.325 40.909 0.00 0.00 37.23 2.71
120 121 3.262420 GACGCCTCATTACTGACAATGT 58.738 45.455 0.00 0.00 37.23 2.71
121 122 2.609459 GGACGCCTCATTACTGACAATG 59.391 50.000 0.00 0.00 37.27 2.82
122 123 2.738643 CGGACGCCTCATTACTGACAAT 60.739 50.000 0.00 0.00 0.00 2.71
123 124 1.403647 CGGACGCCTCATTACTGACAA 60.404 52.381 0.00 0.00 0.00 3.18
124 125 0.172578 CGGACGCCTCATTACTGACA 59.827 55.000 0.00 0.00 0.00 3.58
125 126 0.454600 TCGGACGCCTCATTACTGAC 59.545 55.000 0.00 0.00 0.00 3.51
126 127 0.738975 CTCGGACGCCTCATTACTGA 59.261 55.000 0.00 0.00 0.00 3.41
127 128 0.249073 CCTCGGACGCCTCATTACTG 60.249 60.000 0.00 0.00 0.00 2.74
128 129 0.395311 TCCTCGGACGCCTCATTACT 60.395 55.000 0.00 0.00 0.00 2.24
129 130 0.248949 GTCCTCGGACGCCTCATTAC 60.249 60.000 0.00 0.00 35.30 1.89
130 131 2.112898 GTCCTCGGACGCCTCATTA 58.887 57.895 0.00 0.00 35.30 1.90
131 132 2.893398 GTCCTCGGACGCCTCATT 59.107 61.111 0.00 0.00 35.30 2.57
139 140 3.179939 GCGCTTTCGTCCTCGGAC 61.180 66.667 0.00 6.01 41.40 4.79
140 141 2.430382 AAAGCGCTTTCGTCCTCGGA 62.430 55.000 29.11 0.00 38.14 4.55
141 142 2.027625 AAAGCGCTTTCGTCCTCGG 61.028 57.895 29.11 0.00 38.14 4.63
142 143 1.130613 CAAAGCGCTTTCGTCCTCG 59.869 57.895 31.63 15.38 38.14 4.63
143 144 1.154395 GCAAAGCGCTTTCGTCCTC 60.154 57.895 31.63 12.93 37.77 3.71
144 145 2.946762 GCAAAGCGCTTTCGTCCT 59.053 55.556 31.63 8.32 37.77 3.85
153 154 0.727398 ATTAACGAGGAGCAAAGCGC 59.273 50.000 0.00 0.00 42.91 5.92
154 155 1.999735 TCATTAACGAGGAGCAAAGCG 59.000 47.619 0.00 0.00 0.00 4.68
155 156 3.665173 CTCATTAACGAGGAGCAAAGC 57.335 47.619 0.00 0.00 0.00 3.51
161 162 3.068732 TGGATGAGCTCATTAACGAGGAG 59.931 47.826 29.26 0.00 36.57 3.69
162 163 3.031013 TGGATGAGCTCATTAACGAGGA 58.969 45.455 29.26 5.81 36.57 3.71
163 164 3.459232 TGGATGAGCTCATTAACGAGG 57.541 47.619 29.26 0.00 36.57 4.63
164 165 4.625028 TCATGGATGAGCTCATTAACGAG 58.375 43.478 29.26 16.89 36.57 4.18
165 166 4.670896 TCATGGATGAGCTCATTAACGA 57.329 40.909 29.26 19.86 36.57 3.85
166 167 5.739752 TTTCATGGATGAGCTCATTAACG 57.260 39.130 29.26 18.08 38.19 3.18
167 168 6.294397 GGGATTTCATGGATGAGCTCATTAAC 60.294 42.308 29.26 21.51 38.19 2.01
168 169 5.771666 GGGATTTCATGGATGAGCTCATTAA 59.228 40.000 29.26 20.35 38.19 1.40
169 170 5.319453 GGGATTTCATGGATGAGCTCATTA 58.681 41.667 29.26 21.12 38.19 1.90
170 171 4.150359 GGGATTTCATGGATGAGCTCATT 58.850 43.478 29.26 12.07 38.19 2.57
171 172 3.764218 GGGATTTCATGGATGAGCTCAT 58.236 45.455 29.09 29.09 38.19 2.90
172 173 2.486013 CGGGATTTCATGGATGAGCTCA 60.486 50.000 20.79 20.79 38.19 4.26
173 174 2.149578 CGGGATTTCATGGATGAGCTC 58.850 52.381 6.82 6.82 38.19 4.09
174 175 1.816961 GCGGGATTTCATGGATGAGCT 60.817 52.381 0.00 0.00 38.19 4.09
175 176 0.595095 GCGGGATTTCATGGATGAGC 59.405 55.000 0.00 0.00 38.19 4.26
176 177 1.971481 TGCGGGATTTCATGGATGAG 58.029 50.000 0.00 0.00 38.19 2.90
177 178 2.507484 GATGCGGGATTTCATGGATGA 58.493 47.619 0.00 0.00 34.44 2.92
178 179 1.542915 GGATGCGGGATTTCATGGATG 59.457 52.381 0.00 0.00 0.00 3.51
179 180 1.426598 AGGATGCGGGATTTCATGGAT 59.573 47.619 0.00 0.00 0.00 3.41
180 181 0.846015 AGGATGCGGGATTTCATGGA 59.154 50.000 0.00 0.00 0.00 3.41
181 182 2.566833 TAGGATGCGGGATTTCATGG 57.433 50.000 0.00 0.00 0.00 3.66
182 183 4.074259 TCAATAGGATGCGGGATTTCATG 58.926 43.478 0.00 0.00 0.00 3.07
183 184 4.371624 TCAATAGGATGCGGGATTTCAT 57.628 40.909 0.00 0.00 0.00 2.57
184 185 3.855255 TCAATAGGATGCGGGATTTCA 57.145 42.857 0.00 0.00 0.00 2.69
185 186 4.691860 CATCAATAGGATGCGGGATTTC 57.308 45.455 0.00 0.00 46.35 2.17
195 196 6.505048 TGTCAAGGTCATCATCAATAGGAT 57.495 37.500 0.00 0.00 36.39 3.24
196 197 5.685861 GCTGTCAAGGTCATCATCAATAGGA 60.686 44.000 0.00 0.00 0.00 2.94
197 198 4.514441 GCTGTCAAGGTCATCATCAATAGG 59.486 45.833 0.00 0.00 0.00 2.57
198 199 4.514441 GGCTGTCAAGGTCATCATCAATAG 59.486 45.833 0.00 0.00 0.00 1.73
199 200 4.080413 TGGCTGTCAAGGTCATCATCAATA 60.080 41.667 0.00 0.00 0.00 1.90
200 201 3.285484 GGCTGTCAAGGTCATCATCAAT 58.715 45.455 0.00 0.00 0.00 2.57
201 202 2.040145 TGGCTGTCAAGGTCATCATCAA 59.960 45.455 0.00 0.00 0.00 2.57
202 203 1.629861 TGGCTGTCAAGGTCATCATCA 59.370 47.619 0.00 0.00 0.00 3.07
203 204 2.408271 TGGCTGTCAAGGTCATCATC 57.592 50.000 0.00 0.00 0.00 2.92
204 205 2.885135 TTGGCTGTCAAGGTCATCAT 57.115 45.000 0.00 0.00 0.00 2.45
205 206 2.885135 ATTGGCTGTCAAGGTCATCA 57.115 45.000 0.00 0.00 38.95 3.07
206 207 3.256631 ACAAATTGGCTGTCAAGGTCATC 59.743 43.478 0.00 0.00 38.95 2.92
207 208 3.233507 ACAAATTGGCTGTCAAGGTCAT 58.766 40.909 0.00 0.00 38.95 3.06
208 209 2.665165 ACAAATTGGCTGTCAAGGTCA 58.335 42.857 0.00 0.00 38.95 4.02
209 210 3.568007 TGTACAAATTGGCTGTCAAGGTC 59.432 43.478 0.00 0.00 38.95 3.85
210 211 3.561143 TGTACAAATTGGCTGTCAAGGT 58.439 40.909 0.00 1.72 38.95 3.50
211 212 3.820467 TCTGTACAAATTGGCTGTCAAGG 59.180 43.478 0.00 0.00 38.95 3.61
212 213 5.215160 GTTCTGTACAAATTGGCTGTCAAG 58.785 41.667 0.00 0.00 38.95 3.02
213 214 4.037446 GGTTCTGTACAAATTGGCTGTCAA 59.963 41.667 0.00 0.00 40.01 3.18
214 215 3.568007 GGTTCTGTACAAATTGGCTGTCA 59.432 43.478 0.00 0.00 0.00 3.58
215 216 3.568007 TGGTTCTGTACAAATTGGCTGTC 59.432 43.478 0.00 0.00 0.00 3.51
216 217 3.561143 TGGTTCTGTACAAATTGGCTGT 58.439 40.909 0.00 0.00 0.00 4.40
217 218 3.057315 CCTGGTTCTGTACAAATTGGCTG 60.057 47.826 0.00 0.00 0.00 4.85
218 219 3.157087 CCTGGTTCTGTACAAATTGGCT 58.843 45.455 0.00 0.00 0.00 4.75
219 220 2.352715 GCCTGGTTCTGTACAAATTGGC 60.353 50.000 0.00 2.96 0.00 4.52
220 221 2.890311 TGCCTGGTTCTGTACAAATTGG 59.110 45.455 0.00 0.00 0.00 3.16
221 222 4.789012 ATGCCTGGTTCTGTACAAATTG 57.211 40.909 0.00 0.00 0.00 2.32
222 223 5.106317 CGTTATGCCTGGTTCTGTACAAATT 60.106 40.000 0.00 0.00 0.00 1.82
223 224 4.394920 CGTTATGCCTGGTTCTGTACAAAT 59.605 41.667 0.00 0.00 0.00 2.32
224 225 3.749088 CGTTATGCCTGGTTCTGTACAAA 59.251 43.478 0.00 0.00 0.00 2.83
225 226 3.007074 TCGTTATGCCTGGTTCTGTACAA 59.993 43.478 0.00 0.00 0.00 2.41
226 227 2.563620 TCGTTATGCCTGGTTCTGTACA 59.436 45.455 0.00 0.00 0.00 2.90
227 228 3.119245 TCTCGTTATGCCTGGTTCTGTAC 60.119 47.826 0.00 0.00 0.00 2.90
228 229 3.093814 TCTCGTTATGCCTGGTTCTGTA 58.906 45.455 0.00 0.00 0.00 2.74
229 230 1.899814 TCTCGTTATGCCTGGTTCTGT 59.100 47.619 0.00 0.00 0.00 3.41
230 231 2.672961 TCTCGTTATGCCTGGTTCTG 57.327 50.000 0.00 0.00 0.00 3.02
231 232 3.322254 CCTATCTCGTTATGCCTGGTTCT 59.678 47.826 0.00 0.00 0.00 3.01
232 233 3.069729 ACCTATCTCGTTATGCCTGGTTC 59.930 47.826 0.00 0.00 0.00 3.62
233 234 3.039011 ACCTATCTCGTTATGCCTGGTT 58.961 45.455 0.00 0.00 0.00 3.67
234 235 2.628657 GACCTATCTCGTTATGCCTGGT 59.371 50.000 0.00 0.00 0.00 4.00
235 236 2.351835 CGACCTATCTCGTTATGCCTGG 60.352 54.545 0.00 0.00 0.00 4.45
236 237 2.552743 TCGACCTATCTCGTTATGCCTG 59.447 50.000 0.00 0.00 35.10 4.85
237 238 2.860009 TCGACCTATCTCGTTATGCCT 58.140 47.619 0.00 0.00 35.10 4.75
238 239 3.851976 ATCGACCTATCTCGTTATGCC 57.148 47.619 0.00 0.00 35.10 4.40
239 240 6.251589 CACATTATCGACCTATCTCGTTATGC 59.748 42.308 0.00 0.00 35.10 3.14
240 241 7.527457 TCACATTATCGACCTATCTCGTTATG 58.473 38.462 0.00 0.00 35.10 1.90
241 242 7.606839 TCTCACATTATCGACCTATCTCGTTAT 59.393 37.037 0.00 0.00 35.10 1.89
242 243 6.932960 TCTCACATTATCGACCTATCTCGTTA 59.067 38.462 0.00 0.00 35.10 3.18
243 244 5.763698 TCTCACATTATCGACCTATCTCGTT 59.236 40.000 0.00 0.00 35.10 3.85
244 245 5.306394 TCTCACATTATCGACCTATCTCGT 58.694 41.667 0.00 0.00 35.10 4.18
245 246 5.864628 TCTCACATTATCGACCTATCTCG 57.135 43.478 0.00 0.00 34.83 4.04
246 247 6.151985 ACCATCTCACATTATCGACCTATCTC 59.848 42.308 0.00 0.00 0.00 2.75
247 248 6.013379 ACCATCTCACATTATCGACCTATCT 58.987 40.000 0.00 0.00 0.00 1.98
248 249 6.274157 ACCATCTCACATTATCGACCTATC 57.726 41.667 0.00 0.00 0.00 2.08
249 250 6.672266 AACCATCTCACATTATCGACCTAT 57.328 37.500 0.00 0.00 0.00 2.57
250 251 6.127168 ACAAACCATCTCACATTATCGACCTA 60.127 38.462 0.00 0.00 0.00 3.08
251 252 5.118990 CAAACCATCTCACATTATCGACCT 58.881 41.667 0.00 0.00 0.00 3.85
252 253 4.876107 ACAAACCATCTCACATTATCGACC 59.124 41.667 0.00 0.00 0.00 4.79
253 254 5.220662 CCACAAACCATCTCACATTATCGAC 60.221 44.000 0.00 0.00 0.00 4.20
254 255 4.875536 CCACAAACCATCTCACATTATCGA 59.124 41.667 0.00 0.00 0.00 3.59
255 256 4.035558 CCCACAAACCATCTCACATTATCG 59.964 45.833 0.00 0.00 0.00 2.92
256 257 4.949856 ACCCACAAACCATCTCACATTATC 59.050 41.667 0.00 0.00 0.00 1.75
257 258 4.934356 ACCCACAAACCATCTCACATTAT 58.066 39.130 0.00 0.00 0.00 1.28
258 259 4.380843 ACCCACAAACCATCTCACATTA 57.619 40.909 0.00 0.00 0.00 1.90
259 260 3.243359 ACCCACAAACCATCTCACATT 57.757 42.857 0.00 0.00 0.00 2.71
260 261 2.978156 ACCCACAAACCATCTCACAT 57.022 45.000 0.00 0.00 0.00 3.21
261 262 2.746279 AACCCACAAACCATCTCACA 57.254 45.000 0.00 0.00 0.00 3.58
262 263 2.482721 CGTAACCCACAAACCATCTCAC 59.517 50.000 0.00 0.00 0.00 3.51
263 264 2.773487 CGTAACCCACAAACCATCTCA 58.227 47.619 0.00 0.00 0.00 3.27
264 265 1.467342 GCGTAACCCACAAACCATCTC 59.533 52.381 0.00 0.00 0.00 2.75
265 266 1.202830 TGCGTAACCCACAAACCATCT 60.203 47.619 0.00 0.00 0.00 2.90
266 267 1.068816 GTGCGTAACCCACAAACCATC 60.069 52.381 0.00 0.00 33.50 3.51
267 268 0.955905 GTGCGTAACCCACAAACCAT 59.044 50.000 0.00 0.00 33.50 3.55
268 269 1.102222 GGTGCGTAACCCACAAACCA 61.102 55.000 0.00 0.00 44.02 3.67
269 270 1.655885 GGTGCGTAACCCACAAACC 59.344 57.895 0.00 0.00 44.02 3.27
295 296 8.691797 TGTTCTTCTGCTAGTAAAATGGTTTTT 58.308 29.630 0.00 0.00 38.56 1.94
362 363 2.595386 GCAGCCGGTTGAATGTTTTAG 58.405 47.619 23.83 0.00 0.00 1.85
363 364 1.271102 GGCAGCCGGTTGAATGTTTTA 59.729 47.619 23.83 0.00 0.00 1.52
364 365 0.033366 GGCAGCCGGTTGAATGTTTT 59.967 50.000 23.83 0.00 0.00 2.43
413 418 1.717032 AACTAGTGGCAGGTGTCAGA 58.283 50.000 0.00 0.00 0.00 3.27
420 425 4.496341 CGATGCAAATTAACTAGTGGCAGG 60.496 45.833 0.00 0.00 32.84 4.85
446 451 0.744414 CTGGCCGTGATTGACCGATT 60.744 55.000 0.00 0.00 0.00 3.34
482 487 0.756442 TTGAAGCAGGGGCCATATGC 60.756 55.000 17.05 17.05 42.56 3.14
483 488 1.325355 CTTGAAGCAGGGGCCATATG 58.675 55.000 4.39 1.50 42.56 1.78
484 489 0.468771 GCTTGAAGCAGGGGCCATAT 60.469 55.000 13.09 0.00 41.89 1.78
485 490 1.076777 GCTTGAAGCAGGGGCCATA 60.077 57.895 13.09 0.00 41.89 2.74
486 491 2.363406 GCTTGAAGCAGGGGCCAT 60.363 61.111 13.09 0.00 41.89 4.40
576 581 2.158957 GGTAATCTGGAATCTGGTGCGA 60.159 50.000 0.00 0.00 0.00 5.10
645 650 1.070914 CTATTCCCGCCTTCCTTCCTC 59.929 57.143 0.00 0.00 0.00 3.71
646 651 1.132500 CTATTCCCGCCTTCCTTCCT 58.868 55.000 0.00 0.00 0.00 3.36
648 653 1.485066 TGACTATTCCCGCCTTCCTTC 59.515 52.381 0.00 0.00 0.00 3.46
649 654 1.580059 TGACTATTCCCGCCTTCCTT 58.420 50.000 0.00 0.00 0.00 3.36
657 662 1.148498 GGGGGCTTGACTATTCCCG 59.852 63.158 0.00 0.00 39.66 5.14
659 664 1.148498 CCGGGGGCTTGACTATTCC 59.852 63.158 0.00 0.00 0.00 3.01
674 679 1.801913 CGAGTCGTTGAGCTTCCGG 60.802 63.158 3.82 0.00 0.00 5.14
675 680 1.066114 GACGAGTCGTTGAGCTTCCG 61.066 60.000 20.91 0.00 41.37 4.30
699 708 1.234615 GCGGGCAGTAGCAAACAAGA 61.235 55.000 0.00 0.00 44.61 3.02
703 718 4.460873 GCGCGGGCAGTAGCAAAC 62.461 66.667 20.76 0.00 44.61 2.93
779 812 2.248835 CGTGGTGGTGGAACGGAAC 61.249 63.158 0.00 0.00 38.12 3.62
786 819 1.567208 ATAATGGCCGTGGTGGTGGA 61.567 55.000 0.00 0.00 41.21 4.02
789 822 4.080751 GGTATATATAATGGCCGTGGTGGT 60.081 45.833 0.00 0.00 41.21 4.16
790 823 4.448210 GGTATATATAATGGCCGTGGTGG 58.552 47.826 0.00 0.00 42.50 4.61
792 825 3.133362 CGGGTATATATAATGGCCGTGGT 59.867 47.826 0.00 0.00 0.00 4.16
793 826 3.724374 CGGGTATATATAATGGCCGTGG 58.276 50.000 0.00 0.00 0.00 4.94
794 827 3.128349 GCGGGTATATATAATGGCCGTG 58.872 50.000 0.00 0.00 0.00 4.94
795 828 2.103601 GGCGGGTATATATAATGGCCGT 59.896 50.000 11.33 0.00 0.00 5.68
796 829 2.762745 GGCGGGTATATATAATGGCCG 58.237 52.381 11.33 0.00 0.00 6.13
797 830 2.103601 ACGGCGGGTATATATAATGGCC 59.896 50.000 13.24 14.69 36.01 5.36
798 831 3.387397 GACGGCGGGTATATATAATGGC 58.613 50.000 13.24 0.00 0.00 4.40
799 832 3.635331 CGACGGCGGGTATATATAATGG 58.365 50.000 13.24 0.00 0.00 3.16
800 833 3.047796 GCGACGGCGGGTATATATAATG 58.952 50.000 15.06 0.00 38.16 1.90
801 834 2.035066 GGCGACGGCGGGTATATATAAT 59.965 50.000 15.06 0.00 41.24 1.28
802 835 1.405105 GGCGACGGCGGGTATATATAA 59.595 52.381 15.06 0.00 41.24 0.98
803 836 1.024271 GGCGACGGCGGGTATATATA 58.976 55.000 15.06 0.00 41.24 0.86
804 837 1.669999 GGGCGACGGCGGGTATATAT 61.670 60.000 15.06 0.00 41.24 0.86
852 890 3.012274 AGTTGAAGAGGAGATGGGAGAGA 59.988 47.826 0.00 0.00 0.00 3.10
856 894 2.472029 GGAGTTGAAGAGGAGATGGGA 58.528 52.381 0.00 0.00 0.00 4.37
881 919 2.513026 CTTGGTCGAGCTGTGAGGGG 62.513 65.000 16.64 0.00 0.00 4.79
890 928 0.591659 GGTTGGTTTCTTGGTCGAGC 59.408 55.000 7.89 7.89 0.00 5.03
892 930 2.421751 TTGGTTGGTTTCTTGGTCGA 57.578 45.000 0.00 0.00 0.00 4.20
894 932 3.552890 GCAGATTGGTTGGTTTCTTGGTC 60.553 47.826 0.00 0.00 0.00 4.02
911 962 0.105593 ACGATCTTGGCGATGCAGAT 59.894 50.000 0.00 0.00 30.84 2.90
921 972 2.376808 AGAGCTGACAACGATCTTGG 57.623 50.000 0.00 0.00 0.00 3.61
922 973 2.343843 CGAAGAGCTGACAACGATCTTG 59.656 50.000 0.00 0.00 30.62 3.02
924 975 1.813178 TCGAAGAGCTGACAACGATCT 59.187 47.619 0.00 0.00 0.00 2.75
933 984 2.749280 TGCAAGAATCGAAGAGCTGA 57.251 45.000 0.00 0.00 43.63 4.26
937 988 2.701807 CGCAATGCAAGAATCGAAGAG 58.298 47.619 5.91 0.00 43.63 2.85
943 994 0.863119 GACCGCGCAATGCAAGAATC 60.863 55.000 8.75 0.00 46.97 2.52
944 995 1.137404 GACCGCGCAATGCAAGAAT 59.863 52.632 8.75 0.00 46.97 2.40
993 1051 1.522355 CGCTGAAGCCATCGGTGAT 60.522 57.895 0.00 0.00 46.01 3.06
1011 1069 1.227380 CATAGACCTCCACGGCTGC 60.227 63.158 0.00 0.00 35.61 5.25
1165 1229 2.365586 CCAGGCTGGACAGGGAGAG 61.366 68.421 29.96 0.00 40.96 3.20
1227 1291 4.020617 TGCAGGTTGGAGCCGGAG 62.021 66.667 5.05 0.00 0.00 4.63
1639 1710 0.248907 CGGTGCCCATGTACTCGTAG 60.249 60.000 0.00 0.00 0.00 3.51
1659 1730 2.045536 GGTGCTTCTCCAGGCTGG 60.046 66.667 28.01 28.01 39.43 4.85
1841 1917 4.970662 AAATGGTGAGATGGTTCGATTG 57.029 40.909 0.00 0.00 0.00 2.67
1846 1922 4.336713 GGCTAGAAAATGGTGAGATGGTTC 59.663 45.833 0.00 0.00 0.00 3.62
1849 1925 4.162040 AGGCTAGAAAATGGTGAGATGG 57.838 45.455 0.00 0.00 0.00 3.51
1864 1940 1.000955 ACAACTCGTGGTCAAGGCTAG 59.999 52.381 0.00 0.00 0.00 3.42
1865 1941 1.000506 GACAACTCGTGGTCAAGGCTA 59.999 52.381 0.00 0.00 34.22 3.93
1868 1944 0.031585 TCGACAACTCGTGGTCAAGG 59.968 55.000 5.51 0.00 41.02 3.61
1894 1970 1.003355 ATTCAGCCGTCCACAGGTG 60.003 57.895 0.00 0.00 0.00 4.00
1897 1973 0.320683 TGACATTCAGCCGTCCACAG 60.321 55.000 0.00 0.00 0.00 3.66
1907 1983 2.227388 GGTGCCAGACTTTGACATTCAG 59.773 50.000 0.00 0.00 0.00 3.02
1981 2138 3.371702 GGAACCTTCCTATTCCAAGTCCC 60.372 52.174 0.00 0.00 43.40 4.46
2017 2174 9.250624 GATTGTGAGTAGTAGGATTTATGTGAC 57.749 37.037 0.00 0.00 0.00 3.67
2093 2250 2.275318 GTATCTGTCAGGCTGTTGCTC 58.725 52.381 15.27 2.41 39.59 4.26
2383 2552 1.813859 CCGACCCGATAACAGCTCA 59.186 57.895 0.00 0.00 0.00 4.26
2389 2558 2.279054 GACCGCCGACCCGATAAC 60.279 66.667 0.00 0.00 0.00 1.89
2461 2630 3.807209 GCTTGTCCTGCTTCTTGAGGTAA 60.807 47.826 0.00 0.00 0.00 2.85
2488 2657 3.546543 GCCGGATCCATGACCCGA 61.547 66.667 13.41 0.00 45.58 5.14
2551 2720 2.415168 GCTCAAGCATTTGTACGCTACA 59.585 45.455 0.00 0.00 37.54 2.74
2632 2801 6.276847 CACTTGTAGGTAGTCATCCATCTTC 58.723 44.000 0.00 0.00 0.00 2.87
2641 2810 2.158279 TGGACCCACTTGTAGGTAGTCA 60.158 50.000 0.00 0.00 36.17 3.41
2697 2866 6.258899 AGCTTTTCTTTCTTCTCAACGTTTC 58.741 36.000 0.00 0.00 0.00 2.78
2710 2879 9.286946 CACTCATCATCAATAAGCTTTTCTTTC 57.713 33.333 3.20 0.00 36.25 2.62
2715 2884 7.147949 CCTTCCACTCATCATCAATAAGCTTTT 60.148 37.037 3.20 0.00 0.00 2.27
2731 2900 1.351076 TCATGTCAGCCTTCCACTCA 58.649 50.000 0.00 0.00 0.00 3.41
2823 2992 1.129624 GCAAAATGTCGGCGTGTATCA 59.870 47.619 6.85 0.44 0.00 2.15
2962 3131 6.659745 TGCTACTCTTACTCCTTTACAACA 57.340 37.500 0.00 0.00 0.00 3.33
3010 3179 0.977395 ACGCCCCTATTGGATCTAGC 59.023 55.000 0.00 0.00 35.39 3.42
3019 3188 2.303600 TGACTTGTGTTACGCCCCTATT 59.696 45.455 0.00 0.00 0.00 1.73
3020 3189 1.903860 TGACTTGTGTTACGCCCCTAT 59.096 47.619 0.00 0.00 0.00 2.57
3027 3196 3.428870 GGTGATCTGTGACTTGTGTTACG 59.571 47.826 0.00 0.00 35.72 3.18
3133 3358 4.333926 GCAAAACTTTTGGCATTTACACCA 59.666 37.500 14.68 0.00 37.08 4.17
3232 3458 7.791029 AGGTAACAAAAACACCATTTCAGAAT 58.209 30.769 0.00 0.00 41.41 2.40
3246 3472 9.810545 CCTTTTCTAACATGAAGGTAACAAAAA 57.189 29.630 0.00 0.00 41.41 1.94
3271 3497 2.736670 ACTGGATTATGGGAGCAACC 57.263 50.000 0.00 0.00 38.08 3.77
3288 3514 0.871057 GAGAGCAAAGCGCAGAAACT 59.129 50.000 11.47 0.00 46.13 2.66
3325 3552 3.861886 GCCACCAAAATGACATGAGGTTG 60.862 47.826 0.00 3.47 0.00 3.77
3347 3574 6.870965 GGATGGTATACTAGAAGCTCACAATG 59.129 42.308 2.25 0.00 0.00 2.82
3427 3654 7.732222 TTCATACCATAAAGGCTTTCCAAAT 57.268 32.000 17.13 1.04 43.14 2.32
3496 3723 3.009473 AGCATAGAAGTTTGCCTCCTCAA 59.991 43.478 0.00 0.00 39.72 3.02
3501 3728 5.573337 AAATGAGCATAGAAGTTTGCCTC 57.427 39.130 0.00 0.00 39.72 4.70
3544 3771 5.849475 ACCCCCAAATTCTTGAAAGGTAATT 59.151 36.000 0.00 0.00 34.14 1.40
3548 3775 3.344535 ACCCCCAAATTCTTGAAAGGT 57.655 42.857 0.00 0.00 34.14 3.50
3605 3832 2.343484 ATCTGTCCATGACATGCTGG 57.657 50.000 10.10 0.00 41.94 4.85
3665 3892 4.331159 AAGGTGTGTTTGCCCCTATAAT 57.669 40.909 0.00 0.00 0.00 1.28
3689 3916 7.232737 AGGTATACTGGTGATACATGATCGAAA 59.767 37.037 0.00 0.00 37.38 3.46
3770 3997 7.832503 CCAAAAGAAATGATACATTTGGGAC 57.167 36.000 13.25 1.30 41.80 4.46
3784 4011 8.566109 AGACACCTATATTACCCCAAAAGAAAT 58.434 33.333 0.00 0.00 0.00 2.17
3785 4012 7.935405 AGACACCTATATTACCCCAAAAGAAA 58.065 34.615 0.00 0.00 0.00 2.52
3786 4013 7.366191 GGAGACACCTATATTACCCCAAAAGAA 60.366 40.741 0.00 0.00 35.41 2.52
3787 4014 6.100714 GGAGACACCTATATTACCCCAAAAGA 59.899 42.308 0.00 0.00 35.41 2.52
3788 4015 6.296803 GGAGACACCTATATTACCCCAAAAG 58.703 44.000 0.00 0.00 35.41 2.27
3789 4016 5.133153 GGGAGACACCTATATTACCCCAAAA 59.867 44.000 0.00 0.00 38.98 2.44
3790 4017 4.661709 GGGAGACACCTATATTACCCCAAA 59.338 45.833 0.00 0.00 38.98 3.28
3794 4021 3.504375 ACGGGAGACACCTATATTACCC 58.496 50.000 0.00 0.00 38.98 3.69
3808 4035 2.682563 GCCAAATGGTATTGACGGGAGA 60.683 50.000 0.71 0.00 37.57 3.71
3829 4056 2.364972 AGAAACCAAACCCCAGTCAG 57.635 50.000 0.00 0.00 0.00 3.51
3830 4057 2.107552 CCTAGAAACCAAACCCCAGTCA 59.892 50.000 0.00 0.00 0.00 3.41
3831 4058 2.374170 TCCTAGAAACCAAACCCCAGTC 59.626 50.000 0.00 0.00 0.00 3.51
3832 4059 2.424793 TCCTAGAAACCAAACCCCAGT 58.575 47.619 0.00 0.00 0.00 4.00
3833 4060 3.518992 TTCCTAGAAACCAAACCCCAG 57.481 47.619 0.00 0.00 0.00 4.45
3884 4111 7.809546 AGAAGGGTGCTATTAAATTCTAAGC 57.190 36.000 0.00 0.00 0.00 3.09
3891 4118 8.306761 CAAGAAACAAGAAGGGTGCTATTAAAT 58.693 33.333 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.