Multiple sequence alignment - TraesCS1A01G109600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G109600 chr1A 100.000 3008 0 0 1 3008 108776683 108773676 0.000000e+00 5555
1 TraesCS1A01G109600 chr1D 93.457 2048 94 19 986 3008 77392814 77390782 0.000000e+00 3003
2 TraesCS1A01G109600 chr1D 78.545 275 18 17 697 946 77393193 77392935 3.130000e-30 143
3 TraesCS1A01G109600 chr1B 90.386 2070 110 47 986 3008 121010996 121008969 0.000000e+00 2638
4 TraesCS1A01G109600 chr1B 99.291 564 4 0 1 564 320782985 320782422 0.000000e+00 1020
5 TraesCS1A01G109600 chr1B 99.291 564 4 0 1 564 503818510 503817947 0.000000e+00 1020
6 TraesCS1A01G109600 chr1B 99.291 564 4 0 1 564 516021018 516021581 0.000000e+00 1020
7 TraesCS1A01G109600 chr1B 77.899 276 19 18 697 946 121011371 121011112 1.880000e-27 134
8 TraesCS1A01G109600 chrUn 99.291 564 4 0 1 564 390253696 390254259 0.000000e+00 1020
9 TraesCS1A01G109600 chr6B 99.291 564 4 0 1 564 404381398 404380835 0.000000e+00 1020
10 TraesCS1A01G109600 chr6A 99.291 564 4 0 1 564 502321181 502320618 0.000000e+00 1020
11 TraesCS1A01G109600 chr5A 99.291 564 4 0 1 564 259068560 259067997 0.000000e+00 1020
12 TraesCS1A01G109600 chr4A 99.291 564 4 0 1 564 178807325 178806762 0.000000e+00 1020
13 TraesCS1A01G109600 chr3B 99.291 564 4 0 1 564 627208180 627208743 0.000000e+00 1020
14 TraesCS1A01G109600 chr7A 89.036 757 55 16 1788 2524 477173437 477172689 0.000000e+00 913
15 TraesCS1A01G109600 chr7A 84.858 317 22 9 1467 1774 477182080 477181781 2.270000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G109600 chr1A 108773676 108776683 3007 True 5555 5555 100.0000 1 3008 1 chr1A.!!$R1 3007
1 TraesCS1A01G109600 chr1D 77390782 77393193 2411 True 1573 3003 86.0010 697 3008 2 chr1D.!!$R1 2311
2 TraesCS1A01G109600 chr1B 121008969 121011371 2402 True 1386 2638 84.1425 697 3008 2 chr1B.!!$R3 2311
3 TraesCS1A01G109600 chr1B 320782422 320782985 563 True 1020 1020 99.2910 1 564 1 chr1B.!!$R1 563
4 TraesCS1A01G109600 chr1B 503817947 503818510 563 True 1020 1020 99.2910 1 564 1 chr1B.!!$R2 563
5 TraesCS1A01G109600 chr1B 516021018 516021581 563 False 1020 1020 99.2910 1 564 1 chr1B.!!$F1 563
6 TraesCS1A01G109600 chrUn 390253696 390254259 563 False 1020 1020 99.2910 1 564 1 chrUn.!!$F1 563
7 TraesCS1A01G109600 chr6B 404380835 404381398 563 True 1020 1020 99.2910 1 564 1 chr6B.!!$R1 563
8 TraesCS1A01G109600 chr6A 502320618 502321181 563 True 1020 1020 99.2910 1 564 1 chr6A.!!$R1 563
9 TraesCS1A01G109600 chr5A 259067997 259068560 563 True 1020 1020 99.2910 1 564 1 chr5A.!!$R1 563
10 TraesCS1A01G109600 chr4A 178806762 178807325 563 True 1020 1020 99.2910 1 564 1 chr4A.!!$R1 563
11 TraesCS1A01G109600 chr3B 627208180 627208743 563 False 1020 1020 99.2910 1 564 1 chr3B.!!$F1 563
12 TraesCS1A01G109600 chr7A 477172689 477173437 748 True 913 913 89.0360 1788 2524 1 chr7A.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 856 0.044092 TTCTACCTCATCCCAGGCCA 59.956 55.0 5.01 0.0 36.98 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2679 2858 0.518636 GTTGCAGAGATGCTCGCAAA 59.481 50.0 19.82 8.72 44.33 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
371 372 5.838521 TGCCTCCTTTCATCCTTTTTAAAGT 59.161 36.000 1.91 0.00 34.20 2.66
374 375 7.255977 GCCTCCTTTCATCCTTTTTAAAGTCTT 60.256 37.037 1.91 0.00 34.20 3.01
410 411 2.050533 GATGCGCCGCACAAAACA 60.051 55.556 16.70 0.00 43.04 2.83
564 565 3.189080 CGTCCTTGATGCATTTGACTTGA 59.811 43.478 0.00 0.00 0.00 3.02
565 566 4.142534 CGTCCTTGATGCATTTGACTTGAT 60.143 41.667 0.00 0.00 0.00 2.57
566 567 5.100259 GTCCTTGATGCATTTGACTTGATG 58.900 41.667 0.00 0.00 0.00 3.07
567 568 4.158949 TCCTTGATGCATTTGACTTGATGG 59.841 41.667 0.00 0.00 0.00 3.51
568 569 4.081862 CCTTGATGCATTTGACTTGATGGT 60.082 41.667 0.00 0.00 0.00 3.55
569 570 4.707030 TGATGCATTTGACTTGATGGTC 57.293 40.909 0.00 0.00 36.81 4.02
570 571 4.338012 TGATGCATTTGACTTGATGGTCT 58.662 39.130 0.00 0.00 37.16 3.85
571 572 4.397103 TGATGCATTTGACTTGATGGTCTC 59.603 41.667 0.00 0.00 37.16 3.36
572 573 4.025040 TGCATTTGACTTGATGGTCTCT 57.975 40.909 0.00 0.00 37.16 3.10
573 574 4.401022 TGCATTTGACTTGATGGTCTCTT 58.599 39.130 0.00 0.00 37.16 2.85
574 575 4.216902 TGCATTTGACTTGATGGTCTCTTG 59.783 41.667 0.00 0.00 37.16 3.02
575 576 4.217118 GCATTTGACTTGATGGTCTCTTGT 59.783 41.667 0.00 0.00 37.16 3.16
576 577 5.696822 CATTTGACTTGATGGTCTCTTGTG 58.303 41.667 0.00 0.00 37.16 3.33
577 578 4.687901 TTGACTTGATGGTCTCTTGTGA 57.312 40.909 0.00 0.00 37.16 3.58
578 579 4.263018 TGACTTGATGGTCTCTTGTGAG 57.737 45.455 0.00 0.00 41.51 3.51
579 580 3.643320 TGACTTGATGGTCTCTTGTGAGT 59.357 43.478 0.00 0.00 40.98 3.41
580 581 4.241681 GACTTGATGGTCTCTTGTGAGTC 58.758 47.826 0.00 0.00 40.98 3.36
581 582 3.900601 ACTTGATGGTCTCTTGTGAGTCT 59.099 43.478 0.00 0.00 40.98 3.24
582 583 5.080337 ACTTGATGGTCTCTTGTGAGTCTA 58.920 41.667 0.00 0.00 40.98 2.59
583 584 5.719085 ACTTGATGGTCTCTTGTGAGTCTAT 59.281 40.000 0.00 0.00 40.98 1.98
584 585 5.843673 TGATGGTCTCTTGTGAGTCTATC 57.156 43.478 8.68 8.68 42.19 2.08
585 586 5.514169 TGATGGTCTCTTGTGAGTCTATCT 58.486 41.667 13.77 0.00 42.27 1.98
586 587 5.592282 TGATGGTCTCTTGTGAGTCTATCTC 59.408 44.000 13.77 0.00 42.27 2.75
601 602 8.886719 TGAGTCTATCTCACAAAAATAGCATTG 58.113 33.333 0.00 0.00 46.77 2.82
602 603 9.102757 GAGTCTATCTCACAAAAATAGCATTGA 57.897 33.333 0.00 0.00 42.34 2.57
603 604 9.624373 AGTCTATCTCACAAAAATAGCATTGAT 57.376 29.630 0.00 0.00 0.00 2.57
608 609 8.920509 TCTCACAAAAATAGCATTGATTGATG 57.079 30.769 11.21 0.00 0.00 3.07
609 610 7.977293 TCTCACAAAAATAGCATTGATTGATGG 59.023 33.333 11.21 0.00 0.00 3.51
610 611 7.613585 TCACAAAAATAGCATTGATTGATGGT 58.386 30.769 11.21 0.00 40.53 3.55
611 612 7.760794 TCACAAAAATAGCATTGATTGATGGTC 59.239 33.333 11.21 0.00 38.56 4.02
612 613 7.762615 CACAAAAATAGCATTGATTGATGGTCT 59.237 33.333 11.21 0.00 38.56 3.85
613 614 7.977853 ACAAAAATAGCATTGATTGATGGTCTC 59.022 33.333 11.21 0.00 38.56 3.36
614 615 7.893124 AAAATAGCATTGATTGATGGTCTCT 57.107 32.000 0.00 0.00 38.56 3.10
615 616 7.507733 AAATAGCATTGATTGATGGTCTCTC 57.492 36.000 0.00 0.00 38.56 3.20
616 617 4.774660 AGCATTGATTGATGGTCTCTCT 57.225 40.909 0.00 0.00 32.66 3.10
617 618 5.113446 AGCATTGATTGATGGTCTCTCTT 57.887 39.130 0.00 0.00 32.66 2.85
618 619 5.507637 AGCATTGATTGATGGTCTCTCTTT 58.492 37.500 0.00 0.00 32.66 2.52
619 620 5.950549 AGCATTGATTGATGGTCTCTCTTTT 59.049 36.000 0.00 0.00 32.66 2.27
620 621 6.436532 AGCATTGATTGATGGTCTCTCTTTTT 59.563 34.615 0.00 0.00 32.66 1.94
637 638 3.477210 TTTTTGGGGCGTAAAAGCATT 57.523 38.095 0.00 0.00 39.27 3.56
638 639 2.447244 TTTGGGGCGTAAAAGCATTG 57.553 45.000 0.00 0.00 39.27 2.82
639 640 1.621992 TTGGGGCGTAAAAGCATTGA 58.378 45.000 0.00 0.00 39.27 2.57
640 641 1.846007 TGGGGCGTAAAAGCATTGAT 58.154 45.000 0.00 0.00 39.27 2.57
641 642 2.175202 TGGGGCGTAAAAGCATTGATT 58.825 42.857 0.00 0.00 39.27 2.57
642 643 2.094286 TGGGGCGTAAAAGCATTGATTG 60.094 45.455 0.00 0.00 39.27 2.67
658 659 7.679659 CATTGATTGCTGATGATAACACAAG 57.320 36.000 0.00 0.00 0.00 3.16
659 660 5.239359 TGATTGCTGATGATAACACAAGC 57.761 39.130 2.73 2.73 37.92 4.01
660 661 4.701171 TGATTGCTGATGATAACACAAGCA 59.299 37.500 7.18 7.18 42.25 3.91
662 663 4.424061 TGCTGATGATAACACAAGCAAC 57.576 40.909 8.46 0.00 41.56 4.17
663 664 3.819902 TGCTGATGATAACACAAGCAACA 59.180 39.130 8.46 0.00 41.56 3.33
664 665 4.277921 TGCTGATGATAACACAAGCAACAA 59.722 37.500 8.46 0.00 41.56 2.83
665 666 5.221204 TGCTGATGATAACACAAGCAACAAA 60.221 36.000 8.46 0.00 41.56 2.83
666 667 5.691305 GCTGATGATAACACAAGCAACAAAA 59.309 36.000 4.44 0.00 37.59 2.44
667 668 6.366877 GCTGATGATAACACAAGCAACAAAAT 59.633 34.615 4.44 0.00 37.59 1.82
668 669 7.095523 GCTGATGATAACACAAGCAACAAAATT 60.096 33.333 4.44 0.00 37.59 1.82
669 670 8.074474 TGATGATAACACAAGCAACAAAATTG 57.926 30.769 0.00 0.00 0.00 2.32
670 671 6.841443 TGATAACACAAGCAACAAAATTGG 57.159 33.333 0.00 0.00 0.00 3.16
671 672 5.757320 TGATAACACAAGCAACAAAATTGGG 59.243 36.000 0.00 0.00 33.50 4.12
672 673 3.625649 ACACAAGCAACAAAATTGGGT 57.374 38.095 0.00 0.00 35.77 4.51
673 674 3.530535 ACACAAGCAACAAAATTGGGTC 58.469 40.909 0.00 0.00 35.74 4.46
674 675 3.055530 ACACAAGCAACAAAATTGGGTCA 60.056 39.130 0.00 0.00 35.74 4.02
675 676 3.937706 CACAAGCAACAAAATTGGGTCAA 59.062 39.130 0.00 0.00 0.00 3.18
676 677 4.034279 CACAAGCAACAAAATTGGGTCAAG 59.966 41.667 0.00 0.00 0.00 3.02
677 678 2.837498 AGCAACAAAATTGGGTCAAGC 58.163 42.857 0.00 0.00 0.00 4.01
678 679 2.170187 AGCAACAAAATTGGGTCAAGCA 59.830 40.909 0.00 0.00 0.00 3.91
679 680 2.545106 GCAACAAAATTGGGTCAAGCAG 59.455 45.455 0.00 0.00 0.00 4.24
680 681 3.740764 GCAACAAAATTGGGTCAAGCAGA 60.741 43.478 0.00 0.00 0.00 4.26
681 682 4.440880 CAACAAAATTGGGTCAAGCAGAA 58.559 39.130 0.00 0.00 0.00 3.02
682 683 4.751767 ACAAAATTGGGTCAAGCAGAAA 57.248 36.364 0.00 0.00 0.00 2.52
683 684 5.096443 ACAAAATTGGGTCAAGCAGAAAA 57.904 34.783 0.00 0.00 0.00 2.29
684 685 5.118286 ACAAAATTGGGTCAAGCAGAAAAG 58.882 37.500 0.00 0.00 0.00 2.27
685 686 5.104982 ACAAAATTGGGTCAAGCAGAAAAGA 60.105 36.000 0.00 0.00 0.00 2.52
686 687 4.861102 AATTGGGTCAAGCAGAAAAGAG 57.139 40.909 0.00 0.00 0.00 2.85
687 688 3.576078 TTGGGTCAAGCAGAAAAGAGA 57.424 42.857 0.00 0.00 0.00 3.10
688 689 3.131709 TGGGTCAAGCAGAAAAGAGAG 57.868 47.619 0.00 0.00 0.00 3.20
689 690 1.809547 GGGTCAAGCAGAAAAGAGAGC 59.190 52.381 0.00 0.00 0.00 4.09
690 691 1.462670 GGTCAAGCAGAAAAGAGAGCG 59.537 52.381 0.00 0.00 0.00 5.03
691 692 1.136113 GTCAAGCAGAAAAGAGAGCGC 60.136 52.381 0.00 0.00 0.00 5.92
692 693 0.870393 CAAGCAGAAAAGAGAGCGCA 59.130 50.000 11.47 0.00 0.00 6.09
693 694 1.265095 CAAGCAGAAAAGAGAGCGCAA 59.735 47.619 11.47 0.00 0.00 4.85
694 695 0.871057 AGCAGAAAAGAGAGCGCAAC 59.129 50.000 11.47 2.78 0.00 4.17
695 696 0.451792 GCAGAAAAGAGAGCGCAACG 60.452 55.000 11.47 0.00 0.00 4.10
703 704 3.423154 GAGCGCAACGGACAAGGG 61.423 66.667 11.47 0.00 0.00 3.95
704 705 3.876589 GAGCGCAACGGACAAGGGA 62.877 63.158 11.47 0.00 0.00 4.20
733 734 3.760684 GGACCAAATCTCTTTCATGCAGT 59.239 43.478 0.00 0.00 0.00 4.40
749 761 0.537188 CAGTCGGTAGTGGGAGCATT 59.463 55.000 0.00 0.00 0.00 3.56
757 769 3.891366 GGTAGTGGGAGCATTTGCATATT 59.109 43.478 5.20 0.00 45.16 1.28
759 771 3.634504 AGTGGGAGCATTTGCATATTCA 58.365 40.909 5.20 0.00 45.16 2.57
778 796 4.152625 GCACGCATGGCAGACGTC 62.153 66.667 13.81 7.70 38.09 4.34
779 797 3.490759 CACGCATGGCAGACGTCC 61.491 66.667 13.01 0.00 38.09 4.79
780 798 3.695606 ACGCATGGCAGACGTCCT 61.696 61.111 13.01 0.00 34.35 3.85
789 807 4.385405 AGACGTCCTGCTGCTGCC 62.385 66.667 13.01 0.00 38.71 4.85
808 826 2.674357 GCCGCGTCCACTTCTATTTTTA 59.326 45.455 4.92 0.00 0.00 1.52
832 850 3.307339 GGCATCAGATTCTACCTCATCCC 60.307 52.174 0.00 0.00 0.00 3.85
833 851 3.326006 GCATCAGATTCTACCTCATCCCA 59.674 47.826 0.00 0.00 0.00 4.37
834 852 4.563168 GCATCAGATTCTACCTCATCCCAG 60.563 50.000 0.00 0.00 0.00 4.45
838 856 0.044092 TTCTACCTCATCCCAGGCCA 59.956 55.000 5.01 0.00 36.98 5.36
850 880 1.397390 CCAGGCCAATGGAGATTGCC 61.397 60.000 5.01 0.00 43.57 4.52
875 905 1.080354 AGACGGATTCCCCCACTCA 59.920 57.895 0.00 0.00 0.00 3.41
876 906 0.978146 AGACGGATTCCCCCACTCAG 60.978 60.000 0.00 0.00 0.00 3.35
877 907 0.976073 GACGGATTCCCCCACTCAGA 60.976 60.000 0.00 0.00 0.00 3.27
878 908 0.546747 ACGGATTCCCCCACTCAGAA 60.547 55.000 0.00 0.00 0.00 3.02
879 909 0.839946 CGGATTCCCCCACTCAGAAT 59.160 55.000 0.00 0.00 33.01 2.40
880 910 1.202698 CGGATTCCCCCACTCAGAATC 60.203 57.143 0.00 3.87 43.30 2.52
881 911 2.647683 GATTCCCCCACTCAGAATCC 57.352 55.000 0.00 0.00 39.87 3.01
892 922 4.523943 CCACTCAGAATCCAATCCAACAAA 59.476 41.667 0.00 0.00 0.00 2.83
894 924 4.216257 ACTCAGAATCCAATCCAACAAACG 59.784 41.667 0.00 0.00 0.00 3.60
895 925 4.141287 TCAGAATCCAATCCAACAAACGT 58.859 39.130 0.00 0.00 0.00 3.99
896 926 5.309638 TCAGAATCCAATCCAACAAACGTA 58.690 37.500 0.00 0.00 0.00 3.57
897 927 5.180492 TCAGAATCCAATCCAACAAACGTAC 59.820 40.000 0.00 0.00 0.00 3.67
899 929 6.370442 CAGAATCCAATCCAACAAACGTACTA 59.630 38.462 0.00 0.00 0.00 1.82
900 930 6.370718 AGAATCCAATCCAACAAACGTACTAC 59.629 38.462 0.00 0.00 0.00 2.73
903 933 4.083696 CCAATCCAACAAACGTACTACACC 60.084 45.833 0.00 0.00 0.00 4.16
904 934 3.815856 TCCAACAAACGTACTACACCA 57.184 42.857 0.00 0.00 0.00 4.17
905 935 4.134379 TCCAACAAACGTACTACACCAA 57.866 40.909 0.00 0.00 0.00 3.67
906 936 4.511527 TCCAACAAACGTACTACACCAAA 58.488 39.130 0.00 0.00 0.00 3.28
907 937 4.332268 TCCAACAAACGTACTACACCAAAC 59.668 41.667 0.00 0.00 0.00 2.93
908 938 4.094590 CCAACAAACGTACTACACCAAACA 59.905 41.667 0.00 0.00 0.00 2.83
909 939 5.391736 CCAACAAACGTACTACACCAAACAA 60.392 40.000 0.00 0.00 0.00 2.83
910 940 5.220557 ACAAACGTACTACACCAAACAAC 57.779 39.130 0.00 0.00 0.00 3.32
929 959 2.325484 ACAAAACCCTCAATTCCACCC 58.675 47.619 0.00 0.00 0.00 4.61
978 1100 2.030027 TCAGGTCTGGGTGTGATCTT 57.970 50.000 0.00 0.00 0.00 2.40
985 1107 1.912043 CTGGGTGTGATCTTTCTCCCT 59.088 52.381 17.28 0.00 36.23 4.20
986 1108 1.909302 TGGGTGTGATCTTTCTCCCTC 59.091 52.381 17.28 1.96 36.23 4.30
987 1109 2.192263 GGGTGTGATCTTTCTCCCTCT 58.808 52.381 12.52 0.00 32.89 3.69
988 1110 2.573915 GGGTGTGATCTTTCTCCCTCTT 59.426 50.000 12.52 0.00 32.89 2.85
989 1111 3.009584 GGGTGTGATCTTTCTCCCTCTTT 59.990 47.826 12.52 0.00 32.89 2.52
990 1112 4.257731 GGTGTGATCTTTCTCCCTCTTTC 58.742 47.826 0.00 0.00 0.00 2.62
991 1113 4.019771 GGTGTGATCTTTCTCCCTCTTTCT 60.020 45.833 0.00 0.00 0.00 2.52
992 1114 5.175127 GTGTGATCTTTCTCCCTCTTTCTC 58.825 45.833 0.00 0.00 0.00 2.87
993 1115 5.046663 GTGTGATCTTTCTCCCTCTTTCTCT 60.047 44.000 0.00 0.00 0.00 3.10
994 1116 5.046735 TGTGATCTTTCTCCCTCTTTCTCTG 60.047 44.000 0.00 0.00 0.00 3.35
1202 1324 0.373024 GACGTCTTCGACCTCTACGG 59.627 60.000 8.70 0.00 40.62 4.02
1252 1377 0.107703 TTAGCACCCATGGAGCTTCG 60.108 55.000 28.83 9.11 46.83 3.79
1269 1396 3.688272 CTTCGGAGTTTGCATGCATTAG 58.312 45.455 23.37 10.15 0.00 1.73
1279 1406 2.421073 TGCATGCATTAGAAGTGTGAGC 59.579 45.455 18.46 0.00 0.00 4.26
1280 1407 2.681848 GCATGCATTAGAAGTGTGAGCT 59.318 45.455 14.21 0.00 0.00 4.09
1281 1408 3.487042 GCATGCATTAGAAGTGTGAGCTG 60.487 47.826 14.21 0.00 0.00 4.24
1283 1410 3.329386 TGCATTAGAAGTGTGAGCTGTC 58.671 45.455 0.00 0.00 0.00 3.51
1376 1503 1.254975 TGCGGATGTCGGAGAAGGAA 61.255 55.000 0.00 0.00 39.69 3.36
1478 1605 2.284331 TACCTGCTCTTCGGCCCA 60.284 61.111 0.00 0.00 0.00 5.36
1535 1662 0.115152 TCTTCCTCCTGGCTGTCTGA 59.885 55.000 0.00 0.00 0.00 3.27
1550 1677 4.502962 CTGTCTGACAGGAGAATTCTTCC 58.497 47.826 26.36 11.93 42.35 3.46
1560 1687 6.385766 AGGAGAATTCTTCCTGACTTCAAT 57.614 37.500 19.56 0.00 36.97 2.57
1561 1688 6.179040 AGGAGAATTCTTCCTGACTTCAATG 58.821 40.000 19.56 0.00 36.97 2.82
1588 1722 6.104665 TCACTGATGAAGCTTGTTCTATCTG 58.895 40.000 2.10 6.63 0.00 2.90
1595 1729 5.827797 TGAAGCTTGTTCTATCTGGTTTGTT 59.172 36.000 2.10 0.00 0.00 2.83
1809 1950 2.567169 GTGCTGCCCCCTTTATTTCTTT 59.433 45.455 0.00 0.00 0.00 2.52
1811 1952 3.260632 TGCTGCCCCCTTTATTTCTTTTC 59.739 43.478 0.00 0.00 0.00 2.29
1818 1960 5.104402 CCCCCTTTATTTCTTTTCCATGCAT 60.104 40.000 0.00 0.00 0.00 3.96
1851 2001 9.472361 AAGATTCATGTGAAATTCAAACAGAAG 57.528 29.630 0.00 0.00 36.35 2.85
1858 2008 6.542005 TGTGAAATTCAAACAGAAGCAGACTA 59.458 34.615 0.00 0.00 40.15 2.59
2003 2156 3.179443 TGAAAGCAACGACACTTCTCT 57.821 42.857 0.00 0.00 0.00 3.10
2009 2162 2.726760 GCAACGACACTTCTCTGTAGTG 59.273 50.000 0.00 0.00 46.56 2.74
2080 2236 6.007076 TCACCATTTGCAAGTTAATCCTACA 58.993 36.000 0.00 0.00 0.00 2.74
2128 2285 7.681679 TGTTATGGTGTCATTAGTTAACCTCA 58.318 34.615 0.88 0.00 34.96 3.86
2129 2287 7.822334 TGTTATGGTGTCATTAGTTAACCTCAG 59.178 37.037 0.88 0.00 34.96 3.35
2195 2359 1.028868 GTGGCCAAGAGACTGCATCC 61.029 60.000 7.24 0.00 0.00 3.51
2197 2361 1.817099 GCCAAGAGACTGCATCCCG 60.817 63.158 0.00 0.00 0.00 5.14
2213 2377 6.588204 TGCATCCCGAAAGTTTGTATAGTAT 58.412 36.000 0.00 0.00 0.00 2.12
2348 2516 3.362399 CTGAGAGCCCGCGTGTCAT 62.362 63.158 4.92 0.00 0.00 3.06
2360 2528 1.667756 GCGTGTCATGTAACCGAGACA 60.668 52.381 0.00 0.00 38.56 3.41
2459 2638 1.674057 CAACTCCTTCCCTGCGTCT 59.326 57.895 0.00 0.00 0.00 4.18
2528 2707 4.689549 TCGAGCTCCGGGTTCCCA 62.690 66.667 8.47 0.00 39.14 4.37
2663 2842 2.418368 TGACAACCTTCAGTGTTGCT 57.582 45.000 3.23 0.00 45.42 3.91
2679 2858 1.257743 TGCTAGCGACAAGGAGAAGT 58.742 50.000 10.77 0.00 0.00 3.01
2724 2903 0.605319 TGCAAGGTTCATGGACCGAC 60.605 55.000 17.87 11.38 44.62 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
371 372 3.161067 CAGGAGTCTGAGGTGAAGAAGA 58.839 50.000 0.00 0.00 43.49 2.87
374 375 1.429299 TCCAGGAGTCTGAGGTGAAGA 59.571 52.381 0.00 0.00 43.49 2.87
410 411 2.306805 TCCTTTGATGAGACCAGCATGT 59.693 45.455 0.00 0.00 38.62 3.21
576 577 9.102757 TCAATGCTATTTTTGTGAGATAGACTC 57.897 33.333 0.00 0.00 45.11 3.36
577 578 9.624373 ATCAATGCTATTTTTGTGAGATAGACT 57.376 29.630 0.00 0.00 0.00 3.24
582 583 9.529325 CATCAATCAATGCTATTTTTGTGAGAT 57.471 29.630 0.00 0.00 0.00 2.75
583 584 7.977293 CCATCAATCAATGCTATTTTTGTGAGA 59.023 33.333 0.00 0.00 0.00 3.27
584 585 7.762615 ACCATCAATCAATGCTATTTTTGTGAG 59.237 33.333 0.00 0.00 0.00 3.51
585 586 7.613585 ACCATCAATCAATGCTATTTTTGTGA 58.386 30.769 0.00 0.00 0.00 3.58
586 587 7.762615 AGACCATCAATCAATGCTATTTTTGTG 59.237 33.333 0.00 0.00 0.00 3.33
587 588 7.844009 AGACCATCAATCAATGCTATTTTTGT 58.156 30.769 0.00 0.00 0.00 2.83
588 589 8.195436 AGAGACCATCAATCAATGCTATTTTTG 58.805 33.333 0.00 0.00 0.00 2.44
589 590 8.302515 AGAGACCATCAATCAATGCTATTTTT 57.697 30.769 0.00 0.00 0.00 1.94
590 591 7.778853 AGAGAGACCATCAATCAATGCTATTTT 59.221 33.333 0.00 0.00 0.00 1.82
591 592 7.288560 AGAGAGACCATCAATCAATGCTATTT 58.711 34.615 0.00 0.00 0.00 1.40
592 593 6.839454 AGAGAGACCATCAATCAATGCTATT 58.161 36.000 0.00 0.00 0.00 1.73
593 594 6.436738 AGAGAGACCATCAATCAATGCTAT 57.563 37.500 0.00 0.00 0.00 2.97
594 595 5.883685 AGAGAGACCATCAATCAATGCTA 57.116 39.130 0.00 0.00 0.00 3.49
595 596 4.774660 AGAGAGACCATCAATCAATGCT 57.225 40.909 0.00 0.00 0.00 3.79
596 597 5.831702 AAAGAGAGACCATCAATCAATGC 57.168 39.130 0.00 0.00 0.00 3.56
617 618 3.134458 CAATGCTTTTACGCCCCAAAAA 58.866 40.909 0.00 0.00 0.00 1.94
618 619 2.365617 TCAATGCTTTTACGCCCCAAAA 59.634 40.909 0.00 0.00 0.00 2.44
619 620 1.964223 TCAATGCTTTTACGCCCCAAA 59.036 42.857 0.00 0.00 0.00 3.28
620 621 1.621992 TCAATGCTTTTACGCCCCAA 58.378 45.000 0.00 0.00 0.00 4.12
621 622 1.846007 ATCAATGCTTTTACGCCCCA 58.154 45.000 0.00 0.00 0.00 4.96
622 623 2.539476 CAATCAATGCTTTTACGCCCC 58.461 47.619 0.00 0.00 0.00 5.80
634 635 6.198403 GCTTGTGTTATCATCAGCAATCAATG 59.802 38.462 0.00 0.00 34.02 2.82
635 636 6.127563 TGCTTGTGTTATCATCAGCAATCAAT 60.128 34.615 7.18 0.00 38.02 2.57
636 637 5.183522 TGCTTGTGTTATCATCAGCAATCAA 59.816 36.000 7.18 0.00 38.02 2.57
637 638 4.701171 TGCTTGTGTTATCATCAGCAATCA 59.299 37.500 7.18 0.00 38.02 2.57
638 639 5.239359 TGCTTGTGTTATCATCAGCAATC 57.761 39.130 7.18 0.00 38.02 2.67
639 640 5.047872 TGTTGCTTGTGTTATCATCAGCAAT 60.048 36.000 18.36 0.00 44.92 3.56
640 641 4.277921 TGTTGCTTGTGTTATCATCAGCAA 59.722 37.500 14.24 14.24 43.10 3.91
641 642 3.819902 TGTTGCTTGTGTTATCATCAGCA 59.180 39.130 5.99 5.99 38.68 4.41
642 643 4.424061 TGTTGCTTGTGTTATCATCAGC 57.576 40.909 0.00 0.00 34.26 4.26
643 644 7.878477 ATTTTGTTGCTTGTGTTATCATCAG 57.122 32.000 0.00 0.00 0.00 2.90
644 645 7.171167 CCAATTTTGTTGCTTGTGTTATCATCA 59.829 33.333 0.00 0.00 0.00 3.07
645 646 7.360269 CCCAATTTTGTTGCTTGTGTTATCATC 60.360 37.037 0.00 0.00 0.00 2.92
646 647 6.427547 CCCAATTTTGTTGCTTGTGTTATCAT 59.572 34.615 0.00 0.00 0.00 2.45
647 648 5.757320 CCCAATTTTGTTGCTTGTGTTATCA 59.243 36.000 0.00 0.00 0.00 2.15
648 649 5.757808 ACCCAATTTTGTTGCTTGTGTTATC 59.242 36.000 0.00 0.00 0.00 1.75
649 650 5.679601 ACCCAATTTTGTTGCTTGTGTTAT 58.320 33.333 0.00 0.00 0.00 1.89
650 651 5.091261 ACCCAATTTTGTTGCTTGTGTTA 57.909 34.783 0.00 0.00 0.00 2.41
651 652 3.938334 GACCCAATTTTGTTGCTTGTGTT 59.062 39.130 0.00 0.00 0.00 3.32
652 653 3.055530 TGACCCAATTTTGTTGCTTGTGT 60.056 39.130 0.00 0.00 0.00 3.72
653 654 3.529533 TGACCCAATTTTGTTGCTTGTG 58.470 40.909 0.00 0.00 0.00 3.33
654 655 3.902881 TGACCCAATTTTGTTGCTTGT 57.097 38.095 0.00 0.00 0.00 3.16
655 656 3.002553 GCTTGACCCAATTTTGTTGCTTG 59.997 43.478 0.00 0.00 0.00 4.01
656 657 3.205338 GCTTGACCCAATTTTGTTGCTT 58.795 40.909 0.00 0.00 0.00 3.91
657 658 2.170187 TGCTTGACCCAATTTTGTTGCT 59.830 40.909 0.00 0.00 0.00 3.91
658 659 2.545106 CTGCTTGACCCAATTTTGTTGC 59.455 45.455 0.00 0.00 0.00 4.17
659 660 4.057406 TCTGCTTGACCCAATTTTGTTG 57.943 40.909 0.00 0.00 0.00 3.33
660 661 4.751767 TTCTGCTTGACCCAATTTTGTT 57.248 36.364 0.00 0.00 0.00 2.83
661 662 4.751767 TTTCTGCTTGACCCAATTTTGT 57.248 36.364 0.00 0.00 0.00 2.83
662 663 5.358922 TCTTTTCTGCTTGACCCAATTTTG 58.641 37.500 0.00 0.00 0.00 2.44
663 664 5.363580 TCTCTTTTCTGCTTGACCCAATTTT 59.636 36.000 0.00 0.00 0.00 1.82
664 665 4.895297 TCTCTTTTCTGCTTGACCCAATTT 59.105 37.500 0.00 0.00 0.00 1.82
665 666 4.473444 TCTCTTTTCTGCTTGACCCAATT 58.527 39.130 0.00 0.00 0.00 2.32
666 667 4.077822 CTCTCTTTTCTGCTTGACCCAAT 58.922 43.478 0.00 0.00 0.00 3.16
667 668 3.480470 CTCTCTTTTCTGCTTGACCCAA 58.520 45.455 0.00 0.00 0.00 4.12
668 669 2.811873 GCTCTCTTTTCTGCTTGACCCA 60.812 50.000 0.00 0.00 0.00 4.51
669 670 1.809547 GCTCTCTTTTCTGCTTGACCC 59.190 52.381 0.00 0.00 0.00 4.46
670 671 1.462670 CGCTCTCTTTTCTGCTTGACC 59.537 52.381 0.00 0.00 0.00 4.02
671 672 1.136113 GCGCTCTCTTTTCTGCTTGAC 60.136 52.381 0.00 0.00 0.00 3.18
672 673 1.151668 GCGCTCTCTTTTCTGCTTGA 58.848 50.000 0.00 0.00 0.00 3.02
673 674 0.870393 TGCGCTCTCTTTTCTGCTTG 59.130 50.000 9.73 0.00 0.00 4.01
674 675 1.265365 GTTGCGCTCTCTTTTCTGCTT 59.735 47.619 9.73 0.00 0.00 3.91
675 676 0.871057 GTTGCGCTCTCTTTTCTGCT 59.129 50.000 9.73 0.00 0.00 4.24
676 677 0.451792 CGTTGCGCTCTCTTTTCTGC 60.452 55.000 9.73 0.00 0.00 4.26
677 678 0.164647 CCGTTGCGCTCTCTTTTCTG 59.835 55.000 9.73 0.00 0.00 3.02
678 679 0.033504 TCCGTTGCGCTCTCTTTTCT 59.966 50.000 9.73 0.00 0.00 2.52
679 680 0.164002 GTCCGTTGCGCTCTCTTTTC 59.836 55.000 9.73 0.00 0.00 2.29
680 681 0.531974 TGTCCGTTGCGCTCTCTTTT 60.532 50.000 9.73 0.00 0.00 2.27
681 682 0.531974 TTGTCCGTTGCGCTCTCTTT 60.532 50.000 9.73 0.00 0.00 2.52
682 683 0.946221 CTTGTCCGTTGCGCTCTCTT 60.946 55.000 9.73 0.00 0.00 2.85
683 684 1.373497 CTTGTCCGTTGCGCTCTCT 60.373 57.895 9.73 0.00 0.00 3.10
684 685 2.383527 CCTTGTCCGTTGCGCTCTC 61.384 63.158 9.73 0.00 0.00 3.20
685 686 2.357517 CCTTGTCCGTTGCGCTCT 60.358 61.111 9.73 0.00 0.00 4.09
686 687 3.423154 CCCTTGTCCGTTGCGCTC 61.423 66.667 9.73 0.35 0.00 5.03
687 688 2.748058 ATTCCCTTGTCCGTTGCGCT 62.748 55.000 9.73 0.00 0.00 5.92
688 689 2.332654 ATTCCCTTGTCCGTTGCGC 61.333 57.895 0.00 0.00 0.00 6.09
689 690 0.953471 TCATTCCCTTGTCCGTTGCG 60.953 55.000 0.00 0.00 0.00 4.85
690 691 1.243902 TTCATTCCCTTGTCCGTTGC 58.756 50.000 0.00 0.00 0.00 4.17
691 692 2.228822 CCTTTCATTCCCTTGTCCGTTG 59.771 50.000 0.00 0.00 0.00 4.10
692 693 2.107552 TCCTTTCATTCCCTTGTCCGTT 59.892 45.455 0.00 0.00 0.00 4.44
693 694 1.702957 TCCTTTCATTCCCTTGTCCGT 59.297 47.619 0.00 0.00 0.00 4.69
694 695 2.084546 GTCCTTTCATTCCCTTGTCCG 58.915 52.381 0.00 0.00 0.00 4.79
695 696 2.225017 TGGTCCTTTCATTCCCTTGTCC 60.225 50.000 0.00 0.00 0.00 4.02
703 704 7.219484 TGAAAGAGATTTGGTCCTTTCATTC 57.781 36.000 11.05 0.00 42.54 2.67
733 734 0.392461 GCAAATGCTCCCACTACCGA 60.392 55.000 0.00 0.00 38.21 4.69
749 761 1.065851 CATGCGTGCCTGAATATGCAA 59.934 47.619 0.00 0.00 41.61 4.08
757 769 4.019312 TCTGCCATGCGTGCCTGA 62.019 61.111 0.00 0.00 0.00 3.86
789 807 3.308866 CCCTAAAAATAGAAGTGGACGCG 59.691 47.826 3.53 3.53 0.00 6.01
808 826 3.051940 TGAGGTAGAATCTGATGCCCT 57.948 47.619 0.00 0.00 0.00 5.19
838 856 2.238646 TCTGGTTACGGCAATCTCCATT 59.761 45.455 0.00 0.00 0.00 3.16
850 880 0.179092 GGGGAATCCGTCTGGTTACG 60.179 60.000 0.00 0.00 42.49 3.18
875 905 5.313712 AGTACGTTTGTTGGATTGGATTCT 58.686 37.500 0.00 0.00 0.00 2.40
876 906 5.622770 AGTACGTTTGTTGGATTGGATTC 57.377 39.130 0.00 0.00 0.00 2.52
877 907 5.998981 TGTAGTACGTTTGTTGGATTGGATT 59.001 36.000 0.00 0.00 0.00 3.01
878 908 5.410439 GTGTAGTACGTTTGTTGGATTGGAT 59.590 40.000 0.00 0.00 0.00 3.41
879 909 4.751098 GTGTAGTACGTTTGTTGGATTGGA 59.249 41.667 0.00 0.00 0.00 3.53
880 910 4.083696 GGTGTAGTACGTTTGTTGGATTGG 60.084 45.833 0.00 0.00 0.00 3.16
881 911 4.512198 TGGTGTAGTACGTTTGTTGGATTG 59.488 41.667 0.00 0.00 0.00 2.67
892 922 5.391843 GGTTTTGTTGTTTGGTGTAGTACGT 60.392 40.000 0.00 0.00 0.00 3.57
894 924 5.125900 AGGGTTTTGTTGTTTGGTGTAGTAC 59.874 40.000 0.00 0.00 0.00 2.73
895 925 5.262804 AGGGTTTTGTTGTTTGGTGTAGTA 58.737 37.500 0.00 0.00 0.00 1.82
896 926 4.090819 AGGGTTTTGTTGTTTGGTGTAGT 58.909 39.130 0.00 0.00 0.00 2.73
897 927 4.158764 TGAGGGTTTTGTTGTTTGGTGTAG 59.841 41.667 0.00 0.00 0.00 2.74
899 929 2.900546 TGAGGGTTTTGTTGTTTGGTGT 59.099 40.909 0.00 0.00 0.00 4.16
900 930 3.601443 TGAGGGTTTTGTTGTTTGGTG 57.399 42.857 0.00 0.00 0.00 4.17
903 933 5.064579 GTGGAATTGAGGGTTTTGTTGTTTG 59.935 40.000 0.00 0.00 0.00 2.93
904 934 5.182487 GTGGAATTGAGGGTTTTGTTGTTT 58.818 37.500 0.00 0.00 0.00 2.83
905 935 4.383661 GGTGGAATTGAGGGTTTTGTTGTT 60.384 41.667 0.00 0.00 0.00 2.83
906 936 3.133901 GGTGGAATTGAGGGTTTTGTTGT 59.866 43.478 0.00 0.00 0.00 3.32
907 937 3.494223 GGGTGGAATTGAGGGTTTTGTTG 60.494 47.826 0.00 0.00 0.00 3.33
908 938 2.703536 GGGTGGAATTGAGGGTTTTGTT 59.296 45.455 0.00 0.00 0.00 2.83
909 939 2.325484 GGGTGGAATTGAGGGTTTTGT 58.675 47.619 0.00 0.00 0.00 2.83
910 940 1.623311 GGGGTGGAATTGAGGGTTTTG 59.377 52.381 0.00 0.00 0.00 2.44
941 971 1.986575 GAATCAGCCTTGACGCCTGC 61.987 60.000 0.00 0.00 35.83 4.85
942 972 0.674581 TGAATCAGCCTTGACGCCTG 60.675 55.000 0.00 0.00 35.83 4.85
943 973 0.392193 CTGAATCAGCCTTGACGCCT 60.392 55.000 0.00 0.00 35.83 5.52
944 974 1.372087 CCTGAATCAGCCTTGACGCC 61.372 60.000 4.40 0.00 35.83 5.68
946 976 1.066573 AGACCTGAATCAGCCTTGACG 60.067 52.381 4.40 0.00 35.83 4.35
947 977 2.354259 CAGACCTGAATCAGCCTTGAC 58.646 52.381 4.40 0.00 35.83 3.18
948 978 1.280133 CCAGACCTGAATCAGCCTTGA 59.720 52.381 4.40 0.00 37.81 3.02
949 979 1.681166 CCCAGACCTGAATCAGCCTTG 60.681 57.143 4.40 2.33 0.00 3.61
950 980 0.622665 CCCAGACCTGAATCAGCCTT 59.377 55.000 4.40 0.00 0.00 4.35
952 982 0.393537 CACCCAGACCTGAATCAGCC 60.394 60.000 4.40 0.00 0.00 4.85
953 983 0.326264 ACACCCAGACCTGAATCAGC 59.674 55.000 4.40 0.00 0.00 4.26
954 984 1.625315 TCACACCCAGACCTGAATCAG 59.375 52.381 2.68 2.68 0.00 2.90
955 985 1.728323 TCACACCCAGACCTGAATCA 58.272 50.000 0.00 0.00 0.00 2.57
956 986 2.503356 AGATCACACCCAGACCTGAATC 59.497 50.000 0.00 0.00 0.00 2.52
957 987 2.555664 AGATCACACCCAGACCTGAAT 58.444 47.619 0.00 0.00 0.00 2.57
1196 1318 3.251479 TCTGCTCTTACGTACCGTAGA 57.749 47.619 0.00 0.00 43.21 2.59
1202 1324 2.260481 GTGGCTTCTGCTCTTACGTAC 58.740 52.381 0.00 0.00 39.59 3.67
1203 1325 1.203994 GGTGGCTTCTGCTCTTACGTA 59.796 52.381 0.00 0.00 39.59 3.57
1204 1326 0.037232 GGTGGCTTCTGCTCTTACGT 60.037 55.000 0.00 0.00 39.59 3.57
1205 1327 0.037326 TGGTGGCTTCTGCTCTTACG 60.037 55.000 0.00 0.00 39.59 3.18
1252 1377 4.082571 ACACTTCTAATGCATGCAAACTCC 60.083 41.667 26.68 0.00 0.00 3.85
1269 1396 2.246719 AGTTGGACAGCTCACACTTC 57.753 50.000 0.00 0.00 0.00 3.01
1279 1406 1.867233 CCGTGTCTGAAAGTTGGACAG 59.133 52.381 6.78 0.00 40.06 3.51
1280 1407 1.483004 TCCGTGTCTGAAAGTTGGACA 59.517 47.619 0.00 0.00 37.60 4.02
1281 1408 1.865340 GTCCGTGTCTGAAAGTTGGAC 59.135 52.381 0.00 0.00 35.80 4.02
1283 1410 2.135933 GAGTCCGTGTCTGAAAGTTGG 58.864 52.381 0.00 0.00 33.76 3.77
1502 1629 1.499007 AGGAAGATGTGGTTGGTTGGT 59.501 47.619 0.00 0.00 0.00 3.67
1510 1637 0.548682 AGCCAGGAGGAAGATGTGGT 60.549 55.000 0.00 0.00 36.89 4.16
1550 1677 4.999311 TCATCAGTGAACCATTGAAGTCAG 59.001 41.667 0.00 0.00 34.05 3.51
1560 1687 3.213206 ACAAGCTTCATCAGTGAACCA 57.787 42.857 0.00 0.00 39.36 3.67
1561 1688 3.817647 AGAACAAGCTTCATCAGTGAACC 59.182 43.478 0.00 0.00 39.36 3.62
1588 1722 2.018515 TCGGAAACCTGACAACAAACC 58.981 47.619 0.00 0.00 0.00 3.27
1595 1729 1.000607 CTCGAACTCGGAAACCTGACA 60.001 52.381 0.00 0.00 40.29 3.58
1809 1950 8.916062 ACATGAATCTTGTTTATATGCATGGAA 58.084 29.630 10.16 0.00 36.00 3.53
1811 1952 8.354426 TCACATGAATCTTGTTTATATGCATGG 58.646 33.333 10.16 0.00 36.00 3.66
1851 2001 4.750098 ACGCACCAACATATTATAGTCTGC 59.250 41.667 0.00 0.00 0.00 4.26
1858 2008 5.031066 AGGTACACGCACCAACATATTAT 57.969 39.130 0.00 0.00 41.40 1.28
2003 2156 5.046807 GGGAAGAAGCCTAAACTACACTACA 60.047 44.000 0.00 0.00 0.00 2.74
2009 2162 3.518303 TGAGGGGAAGAAGCCTAAACTAC 59.482 47.826 0.00 0.00 0.00 2.73
2080 2236 4.518970 AGACGGTGCTTTGTCATAAAACAT 59.481 37.500 5.76 0.00 37.58 2.71
2111 2268 7.676004 TGAACATCTGAGGTTAACTAATGACA 58.324 34.615 7.77 0.00 0.00 3.58
2112 2269 7.278868 CCTGAACATCTGAGGTTAACTAATGAC 59.721 40.741 7.77 0.00 0.00 3.06
2128 2285 1.588239 TCCATCTGCCCTGAACATCT 58.412 50.000 0.00 0.00 0.00 2.90
2129 2287 2.019984 GTTCCATCTGCCCTGAACATC 58.980 52.381 0.00 0.00 37.60 3.06
2348 2516 1.891150 GTCTTCCCTGTCTCGGTTACA 59.109 52.381 0.00 0.00 0.00 2.41
2360 2528 3.692406 GTCCGGCGTGTCTTCCCT 61.692 66.667 6.01 0.00 0.00 4.20
2528 2707 1.098050 ACGTCTTTACCCGTATCGCT 58.902 50.000 0.00 0.00 35.16 4.93
2663 2842 2.413837 GCAAACTTCTCCTTGTCGCTA 58.586 47.619 0.00 0.00 0.00 4.26
2679 2858 0.518636 GTTGCAGAGATGCTCGCAAA 59.481 50.000 19.82 8.72 44.33 3.68
2705 2884 0.605319 GTCGGTCCATGAACCTTGCA 60.605 55.000 0.00 0.00 37.15 4.08
2724 2903 4.022068 GGAGCTAGATGAGATGGAGTTGAG 60.022 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.