Multiple sequence alignment - TraesCS1A01G109500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G109500 chr1A 100.000 5919 0 0 1 5919 108769384 108775302 0.000000e+00 10931.0
1 TraesCS1A01G109500 chr1A 90.769 130 9 2 357 485 121136239 121136112 2.840000e-38 171.0
2 TraesCS1A01G109500 chr1D 95.818 3348 100 15 2597 5919 77389085 77392417 0.000000e+00 5371.0
3 TraesCS1A01G109500 chr1D 90.635 2125 129 29 514 2604 77386634 77388722 0.000000e+00 2758.0
4 TraesCS1A01G109500 chr1B 93.999 3366 123 45 2597 5919 121007275 121010604 0.000000e+00 5024.0
5 TraesCS1A01G109500 chr1B 91.226 2006 114 25 610 2604 121004957 121006911 0.000000e+00 2673.0
6 TraesCS1A01G109500 chr7A 89.036 757 55 16 4777 5513 477172689 477173437 0.000000e+00 913.0
7 TraesCS1A01G109500 chr7A 84.858 317 22 9 5527 5834 477181781 477182080 4.490000e-76 296.0
8 TraesCS1A01G109500 chr7D 84.615 169 12 5 359 515 590518835 590518669 7.940000e-34 156.0
9 TraesCS1A01G109500 chr5B 83.648 159 10 8 203 352 599656553 599656402 1.030000e-27 135.0
10 TraesCS1A01G109500 chr5D 81.761 159 11 8 203 352 487291912 487291763 3.750000e-22 117.0
11 TraesCS1A01G109500 chr2B 80.745 161 20 5 597 755 743281212 743281363 1.350000e-21 115.0
12 TraesCS1A01G109500 chr4B 92.105 76 4 1 357 432 187734238 187734165 8.110000e-19 106.0
13 TraesCS1A01G109500 chr6B 89.394 66 4 2 357 422 505705759 505705821 4.920000e-11 80.5
14 TraesCS1A01G109500 chr4A 92.857 42 3 0 357 398 446595129 446595170 1.780000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G109500 chr1A 108769384 108775302 5918 False 10931.0 10931 100.0000 1 5919 1 chr1A.!!$F1 5918
1 TraesCS1A01G109500 chr1D 77386634 77392417 5783 False 4064.5 5371 93.2265 514 5919 2 chr1D.!!$F1 5405
2 TraesCS1A01G109500 chr1B 121004957 121010604 5647 False 3848.5 5024 92.6125 610 5919 2 chr1B.!!$F1 5309
3 TraesCS1A01G109500 chr7A 477172689 477173437 748 False 913.0 913 89.0360 4777 5513 1 chr7A.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 991 0.034476 CTCTGACTGAGTGGCAAGCA 59.966 55.00 0.00 0.00 37.99 3.91 F
992 1022 0.467384 AGCGTGGATCAGATTGGAGG 59.533 55.00 0.00 0.00 0.00 4.30 F
1055 1087 0.618458 ATCTTCAGTAAAGGCGGGCA 59.382 50.00 3.78 0.00 35.54 5.36 F
1423 1455 0.817229 GCCTGAGGATAGCCACAAGC 60.817 60.00 0.65 2.22 44.25 4.01 F
2967 3371 0.393537 CCCTTGGTGACAGGATGAGC 60.394 60.00 0.00 0.00 44.54 4.26 F
4028 4438 3.628942 TCTTTTGCATCATAATGAGCGCT 59.371 39.13 11.27 11.27 34.61 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1947 1979 0.607217 TCACTCTCCGGCGTAACAGA 60.607 55.000 6.01 0.42 0.00 3.41 R
2947 3351 1.279496 CTCATCCTGTCACCAAGGGA 58.721 55.000 0.00 0.00 0.00 4.20 R
2967 3371 4.935205 TGATAACCCATCGTCTTTTGAGTG 59.065 41.667 0.00 0.00 36.33 3.51 R
3772 4182 1.654317 CTGCAGGCAAGCAAAAACAA 58.346 45.000 5.57 0.00 45.13 2.83 R
4164 4574 0.538584 TCTCGATCCTGCACAGCAAT 59.461 50.000 0.00 0.00 38.41 3.56 R
5764 6234 0.115152 TCTTCCTCCTGGCTGTCTGA 59.885 55.000 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.181021 CGAGATATACGGGCGCCC 59.819 66.667 36.69 36.69 0.00 6.13
31 32 2.349755 GCCCGTTCCAGTGGCTTA 59.650 61.111 3.51 0.00 42.01 3.09
32 33 1.077716 GCCCGTTCCAGTGGCTTAT 60.078 57.895 3.51 0.00 42.01 1.73
33 34 1.376609 GCCCGTTCCAGTGGCTTATG 61.377 60.000 3.51 0.00 42.01 1.90
34 35 1.376609 CCCGTTCCAGTGGCTTATGC 61.377 60.000 3.51 0.00 38.76 3.14
35 36 1.705337 CCGTTCCAGTGGCTTATGCG 61.705 60.000 3.51 2.39 40.82 4.73
36 37 0.739462 CGTTCCAGTGGCTTATGCGA 60.739 55.000 3.51 0.00 40.82 5.10
37 38 1.448985 GTTCCAGTGGCTTATGCGAA 58.551 50.000 3.51 0.00 40.82 4.70
38 39 1.398390 GTTCCAGTGGCTTATGCGAAG 59.602 52.381 3.51 0.00 40.82 3.79
52 53 4.366684 GAAGCCCACCCACCCCTG 62.367 72.222 0.00 0.00 0.00 4.45
53 54 4.938756 AAGCCCACCCACCCCTGA 62.939 66.667 0.00 0.00 0.00 3.86
54 55 4.938756 AGCCCACCCACCCCTGAA 62.939 66.667 0.00 0.00 0.00 3.02
55 56 3.909651 GCCCACCCACCCCTGAAA 61.910 66.667 0.00 0.00 0.00 2.69
56 57 2.939298 CCCACCCACCCCTGAAAA 59.061 61.111 0.00 0.00 0.00 2.29
57 58 1.234529 CCCACCCACCCCTGAAAAA 59.765 57.895 0.00 0.00 0.00 1.94
76 77 4.551702 AAAATAAATGTGAAGCCCACCC 57.448 40.909 4.63 0.00 45.09 4.61
77 78 1.762708 ATAAATGTGAAGCCCACCCG 58.237 50.000 4.63 0.00 45.09 5.28
78 79 0.402504 TAAATGTGAAGCCCACCCGT 59.597 50.000 4.63 0.00 45.09 5.28
79 80 0.469144 AAATGTGAAGCCCACCCGTT 60.469 50.000 4.63 0.00 45.09 4.44
80 81 0.469144 AATGTGAAGCCCACCCGTTT 60.469 50.000 4.63 0.00 45.09 3.60
81 82 0.469144 ATGTGAAGCCCACCCGTTTT 60.469 50.000 4.63 0.00 45.09 2.43
82 83 0.684805 TGTGAAGCCCACCCGTTTTT 60.685 50.000 4.63 0.00 45.09 1.94
83 84 1.320507 GTGAAGCCCACCCGTTTTTA 58.679 50.000 0.00 0.00 39.86 1.52
84 85 1.890489 GTGAAGCCCACCCGTTTTTAT 59.110 47.619 0.00 0.00 39.86 1.40
85 86 2.297880 GTGAAGCCCACCCGTTTTTATT 59.702 45.455 0.00 0.00 39.86 1.40
86 87 2.966516 TGAAGCCCACCCGTTTTTATTT 59.033 40.909 0.00 0.00 0.00 1.40
87 88 3.006003 TGAAGCCCACCCGTTTTTATTTC 59.994 43.478 0.00 0.00 0.00 2.17
88 89 2.599677 AGCCCACCCGTTTTTATTTCA 58.400 42.857 0.00 0.00 0.00 2.69
89 90 2.297880 AGCCCACCCGTTTTTATTTCAC 59.702 45.455 0.00 0.00 0.00 3.18
90 91 2.036089 GCCCACCCGTTTTTATTTCACA 59.964 45.455 0.00 0.00 0.00 3.58
91 92 3.859252 GCCCACCCGTTTTTATTTCACAG 60.859 47.826 0.00 0.00 0.00 3.66
92 93 3.305744 CCCACCCGTTTTTATTTCACAGG 60.306 47.826 0.00 0.00 0.00 4.00
93 94 3.305744 CCACCCGTTTTTATTTCACAGGG 60.306 47.826 0.00 0.00 43.03 4.45
94 95 2.894765 ACCCGTTTTTATTTCACAGGGG 59.105 45.455 2.09 0.00 41.75 4.79
95 96 2.894765 CCCGTTTTTATTTCACAGGGGT 59.105 45.455 0.00 0.00 34.19 4.95
96 97 4.080687 CCCGTTTTTATTTCACAGGGGTA 58.919 43.478 0.00 0.00 34.19 3.69
97 98 4.707934 CCCGTTTTTATTTCACAGGGGTAT 59.292 41.667 0.00 0.00 34.19 2.73
98 99 5.887035 CCCGTTTTTATTTCACAGGGGTATA 59.113 40.000 0.00 0.00 34.19 1.47
99 100 6.038936 CCCGTTTTTATTTCACAGGGGTATAG 59.961 42.308 0.00 0.00 34.19 1.31
100 101 6.600427 CCGTTTTTATTTCACAGGGGTATAGT 59.400 38.462 0.00 0.00 0.00 2.12
101 102 7.121611 CCGTTTTTATTTCACAGGGGTATAGTT 59.878 37.037 0.00 0.00 0.00 2.24
102 103 8.517056 CGTTTTTATTTCACAGGGGTATAGTTT 58.483 33.333 0.00 0.00 0.00 2.66
106 107 9.675464 TTTATTTCACAGGGGTATAGTTTACAG 57.325 33.333 0.00 0.00 0.00 2.74
107 108 5.687166 TTCACAGGGGTATAGTTTACAGG 57.313 43.478 0.00 0.00 0.00 4.00
108 109 4.691238 TCACAGGGGTATAGTTTACAGGT 58.309 43.478 0.00 0.00 0.00 4.00
109 110 4.468510 TCACAGGGGTATAGTTTACAGGTG 59.531 45.833 0.00 0.00 0.00 4.00
110 111 4.224370 CACAGGGGTATAGTTTACAGGTGT 59.776 45.833 0.00 0.00 0.00 4.16
111 112 5.422970 CACAGGGGTATAGTTTACAGGTGTA 59.577 44.000 0.00 0.00 0.00 2.90
112 113 6.099269 CACAGGGGTATAGTTTACAGGTGTAT 59.901 42.308 0.00 0.00 0.00 2.29
113 114 6.675303 ACAGGGGTATAGTTTACAGGTGTATT 59.325 38.462 0.00 0.00 0.00 1.89
114 115 6.990349 CAGGGGTATAGTTTACAGGTGTATTG 59.010 42.308 0.00 0.00 0.00 1.90
115 116 6.100714 AGGGGTATAGTTTACAGGTGTATTGG 59.899 42.308 0.00 0.00 0.00 3.16
116 117 6.293698 GGGTATAGTTTACAGGTGTATTGGG 58.706 44.000 0.00 0.00 0.00 4.12
117 118 5.761726 GGTATAGTTTACAGGTGTATTGGGC 59.238 44.000 0.00 0.00 0.00 5.36
118 119 3.081710 AGTTTACAGGTGTATTGGGCC 57.918 47.619 0.00 0.00 0.00 5.80
119 120 2.097036 GTTTACAGGTGTATTGGGCCC 58.903 52.381 17.59 17.59 0.00 5.80
120 121 0.626916 TTACAGGTGTATTGGGCCCC 59.373 55.000 22.27 3.54 0.00 5.80
121 122 0.550393 TACAGGTGTATTGGGCCCCA 60.550 55.000 22.27 9.38 0.00 4.96
133 134 4.351938 GCCCCAAAACGGCGAACC 62.352 66.667 16.62 0.00 36.47 3.62
134 135 2.907917 CCCCAAAACGGCGAACCA 60.908 61.111 16.62 0.00 34.57 3.67
135 136 2.491022 CCCCAAAACGGCGAACCAA 61.491 57.895 16.62 0.00 34.57 3.67
136 137 1.007849 CCCAAAACGGCGAACCAAG 60.008 57.895 16.62 0.00 34.57 3.61
137 138 1.660264 CCAAAACGGCGAACCAAGC 60.660 57.895 16.62 0.00 34.57 4.01
138 139 2.008697 CAAAACGGCGAACCAAGCG 61.009 57.895 16.62 0.00 34.57 4.68
139 140 3.189010 AAAACGGCGAACCAAGCGG 62.189 57.895 16.62 0.00 40.19 5.52
164 165 3.643763 CGAAGGGTTTCTCTATCCATCG 58.356 50.000 0.00 0.00 0.00 3.84
165 166 3.068307 CGAAGGGTTTCTCTATCCATCGT 59.932 47.826 0.00 0.00 31.99 3.73
166 167 4.623002 GAAGGGTTTCTCTATCCATCGTC 58.377 47.826 0.00 0.00 0.00 4.20
167 168 2.966516 AGGGTTTCTCTATCCATCGTCC 59.033 50.000 0.00 0.00 0.00 4.79
168 169 2.037381 GGGTTTCTCTATCCATCGTCCC 59.963 54.545 0.00 0.00 0.00 4.46
169 170 2.037381 GGTTTCTCTATCCATCGTCCCC 59.963 54.545 0.00 0.00 0.00 4.81
170 171 1.617322 TTCTCTATCCATCGTCCCCG 58.383 55.000 0.00 0.00 0.00 5.73
171 172 0.894184 TCTCTATCCATCGTCCCCGC 60.894 60.000 0.00 0.00 0.00 6.13
172 173 1.878656 CTCTATCCATCGTCCCCGCC 61.879 65.000 0.00 0.00 0.00 6.13
173 174 3.282745 CTATCCATCGTCCCCGCCG 62.283 68.421 0.00 0.00 0.00 6.46
191 192 4.148825 CCGCCTGCTCGCTAACCT 62.149 66.667 0.00 0.00 0.00 3.50
192 193 2.125512 CGCCTGCTCGCTAACCTT 60.126 61.111 0.00 0.00 0.00 3.50
193 194 1.741770 CGCCTGCTCGCTAACCTTT 60.742 57.895 0.00 0.00 0.00 3.11
194 195 1.696832 CGCCTGCTCGCTAACCTTTC 61.697 60.000 0.00 0.00 0.00 2.62
195 196 1.696832 GCCTGCTCGCTAACCTTTCG 61.697 60.000 0.00 0.00 0.00 3.46
196 197 0.389948 CCTGCTCGCTAACCTTTCGT 60.390 55.000 0.00 0.00 0.00 3.85
197 198 0.992802 CTGCTCGCTAACCTTTCGTC 59.007 55.000 0.00 0.00 0.00 4.20
198 199 0.389426 TGCTCGCTAACCTTTCGTCC 60.389 55.000 0.00 0.00 0.00 4.79
199 200 0.389426 GCTCGCTAACCTTTCGTCCA 60.389 55.000 0.00 0.00 0.00 4.02
200 201 1.938016 GCTCGCTAACCTTTCGTCCAA 60.938 52.381 0.00 0.00 0.00 3.53
201 202 1.993370 CTCGCTAACCTTTCGTCCAAG 59.007 52.381 0.00 0.00 0.00 3.61
202 203 0.442699 CGCTAACCTTTCGTCCAAGC 59.557 55.000 0.00 0.00 0.00 4.01
203 204 0.803117 GCTAACCTTTCGTCCAAGCC 59.197 55.000 0.00 0.00 0.00 4.35
204 205 1.076332 CTAACCTTTCGTCCAAGCCG 58.924 55.000 0.00 0.00 0.00 5.52
205 206 0.952010 TAACCTTTCGTCCAAGCCGC 60.952 55.000 0.00 0.00 0.00 6.53
206 207 3.431725 CCTTTCGTCCAAGCCGCC 61.432 66.667 0.00 0.00 0.00 6.13
207 208 3.788766 CTTTCGTCCAAGCCGCCG 61.789 66.667 0.00 0.00 0.00 6.46
272 273 4.481112 GGCACAAATCGCCCGCTG 62.481 66.667 0.00 0.00 44.22 5.18
274 275 4.481112 CACAAATCGCCCGCTGCC 62.481 66.667 0.00 0.00 36.24 4.85
342 343 3.998672 GAGTTGGCCGACCCACGA 61.999 66.667 20.18 0.00 45.34 4.35
343 344 4.309950 AGTTGGCCGACCCACGAC 62.310 66.667 20.18 0.00 45.34 4.34
365 366 2.864589 CGCCGCACGTATTTTGGT 59.135 55.556 0.00 0.00 36.87 3.67
366 367 2.079874 CGCCGCACGTATTTTGGTA 58.920 52.632 0.00 0.00 36.87 3.25
367 368 0.653636 CGCCGCACGTATTTTGGTAT 59.346 50.000 0.00 0.00 36.87 2.73
368 369 1.859703 CGCCGCACGTATTTTGGTATA 59.140 47.619 0.00 0.00 36.87 1.47
369 370 2.097104 CGCCGCACGTATTTTGGTATAG 60.097 50.000 0.00 0.00 36.87 1.31
370 371 2.349155 GCCGCACGTATTTTGGTATAGC 60.349 50.000 0.00 0.00 0.00 2.97
371 372 3.128349 CCGCACGTATTTTGGTATAGCT 58.872 45.455 3.20 0.00 0.00 3.32
372 373 3.558418 CCGCACGTATTTTGGTATAGCTT 59.442 43.478 3.20 0.00 0.00 3.74
373 374 4.318546 CCGCACGTATTTTGGTATAGCTTC 60.319 45.833 3.20 0.00 0.00 3.86
374 375 4.506654 CGCACGTATTTTGGTATAGCTTCT 59.493 41.667 3.20 0.00 0.00 2.85
375 376 5.006358 CGCACGTATTTTGGTATAGCTTCTT 59.994 40.000 3.20 0.00 0.00 2.52
376 377 6.456449 CGCACGTATTTTGGTATAGCTTCTTT 60.456 38.462 3.20 0.00 0.00 2.52
377 378 7.248437 GCACGTATTTTGGTATAGCTTCTTTT 58.752 34.615 3.20 0.00 0.00 2.27
378 379 7.218204 GCACGTATTTTGGTATAGCTTCTTTTG 59.782 37.037 3.20 0.00 0.00 2.44
379 380 8.234546 CACGTATTTTGGTATAGCTTCTTTTGT 58.765 33.333 3.20 0.00 0.00 2.83
380 381 8.789762 ACGTATTTTGGTATAGCTTCTTTTGTT 58.210 29.630 3.20 0.00 0.00 2.83
381 382 9.620660 CGTATTTTGGTATAGCTTCTTTTGTTT 57.379 29.630 3.20 0.00 0.00 2.83
410 411 9.778741 ATCTACTCACTTTTCATCTTGTAACAA 57.221 29.630 0.00 0.00 0.00 2.83
411 412 9.607988 TCTACTCACTTTTCATCTTGTAACAAA 57.392 29.630 0.00 0.00 0.00 2.83
414 415 8.137437 ACTCACTTTTCATCTTGTAACAAATGG 58.863 33.333 0.00 0.00 0.00 3.16
415 416 7.432869 TCACTTTTCATCTTGTAACAAATGGG 58.567 34.615 0.00 0.00 0.00 4.00
416 417 7.286546 TCACTTTTCATCTTGTAACAAATGGGA 59.713 33.333 0.00 0.00 0.00 4.37
417 418 7.925483 CACTTTTCATCTTGTAACAAATGGGAA 59.075 33.333 0.00 0.00 0.00 3.97
418 419 7.926018 ACTTTTCATCTTGTAACAAATGGGAAC 59.074 33.333 0.00 0.00 0.00 3.62
436 437 6.942976 TGGGAACAGAGGTTACTTACTAATG 58.057 40.000 0.00 0.00 37.99 1.90
437 438 6.727231 TGGGAACAGAGGTTACTTACTAATGA 59.273 38.462 0.00 0.00 37.99 2.57
438 439 7.040494 GGGAACAGAGGTTACTTACTAATGAC 58.960 42.308 0.00 0.00 37.99 3.06
439 440 7.310237 GGGAACAGAGGTTACTTACTAATGACA 60.310 40.741 0.00 0.00 37.99 3.58
440 441 8.092687 GGAACAGAGGTTACTTACTAATGACAA 58.907 37.037 0.00 0.00 37.36 3.18
441 442 8.828688 AACAGAGGTTACTTACTAATGACAAC 57.171 34.615 0.00 0.00 34.87 3.32
442 443 7.088905 ACAGAGGTTACTTACTAATGACAACG 58.911 38.462 0.00 0.00 0.00 4.10
443 444 7.088905 CAGAGGTTACTTACTAATGACAACGT 58.911 38.462 0.00 0.00 0.00 3.99
444 445 7.597743 CAGAGGTTACTTACTAATGACAACGTT 59.402 37.037 0.00 0.00 0.00 3.99
445 446 7.811713 AGAGGTTACTTACTAATGACAACGTTC 59.188 37.037 0.00 0.00 0.00 3.95
446 447 7.436118 AGGTTACTTACTAATGACAACGTTCA 58.564 34.615 0.00 0.00 0.00 3.18
447 448 7.597743 AGGTTACTTACTAATGACAACGTTCAG 59.402 37.037 0.00 0.00 0.00 3.02
448 449 7.596248 GGTTACTTACTAATGACAACGTTCAGA 59.404 37.037 0.00 0.00 0.00 3.27
449 450 8.971321 GTTACTTACTAATGACAACGTTCAGAA 58.029 33.333 0.00 0.00 0.00 3.02
450 451 9.701098 TTACTTACTAATGACAACGTTCAGAAT 57.299 29.630 0.00 0.00 0.00 2.40
451 452 8.603242 ACTTACTAATGACAACGTTCAGAATT 57.397 30.769 0.00 0.00 0.00 2.17
452 453 9.052759 ACTTACTAATGACAACGTTCAGAATTT 57.947 29.630 0.00 0.00 0.00 1.82
453 454 9.318041 CTTACTAATGACAACGTTCAGAATTTG 57.682 33.333 0.00 6.09 0.00 2.32
454 455 7.490962 ACTAATGACAACGTTCAGAATTTGA 57.509 32.000 0.00 0.00 0.00 2.69
455 456 7.925993 ACTAATGACAACGTTCAGAATTTGAA 58.074 30.769 0.00 0.68 43.40 2.69
456 457 8.402472 ACTAATGACAACGTTCAGAATTTGAAA 58.598 29.630 0.00 3.36 46.85 2.69
457 458 9.232082 CTAATGACAACGTTCAGAATTTGAAAA 57.768 29.630 0.00 1.55 46.85 2.29
458 459 8.647143 AATGACAACGTTCAGAATTTGAAAAT 57.353 26.923 0.00 3.23 46.85 1.82
459 460 8.647143 ATGACAACGTTCAGAATTTGAAAATT 57.353 26.923 0.00 0.68 46.85 1.82
460 461 8.472683 TGACAACGTTCAGAATTTGAAAATTT 57.527 26.923 0.00 0.00 46.85 1.82
461 462 8.930760 TGACAACGTTCAGAATTTGAAAATTTT 58.069 25.926 2.28 2.28 46.85 1.82
462 463 9.408731 GACAACGTTCAGAATTTGAAAATTTTC 57.591 29.630 21.60 21.60 46.85 2.29
463 464 8.930760 ACAACGTTCAGAATTTGAAAATTTTCA 58.069 25.926 26.01 26.01 46.85 2.69
464 465 9.198065 CAACGTTCAGAATTTGAAAATTTTCAC 57.802 29.630 28.78 18.76 46.85 3.18
465 466 7.608755 ACGTTCAGAATTTGAAAATTTTCACG 58.391 30.769 28.78 25.09 46.85 4.35
466 467 7.274686 ACGTTCAGAATTTGAAAATTTTCACGT 59.725 29.630 28.78 25.62 46.85 4.49
467 468 8.107564 CGTTCAGAATTTGAAAATTTTCACGTT 58.892 29.630 28.78 24.43 46.85 3.99
468 469 9.408731 GTTCAGAATTTGAAAATTTTCACGTTC 57.591 29.630 28.78 28.91 46.85 3.95
469 470 8.925161 TCAGAATTTGAAAATTTTCACGTTCT 57.075 26.923 30.99 30.99 45.99 3.01
470 471 9.364989 TCAGAATTTGAAAATTTTCACGTTCTT 57.635 25.926 32.44 23.44 45.99 2.52
471 472 9.623687 CAGAATTTGAAAATTTTCACGTTCTTC 57.376 29.630 32.44 26.13 45.99 2.87
472 473 9.586435 AGAATTTGAAAATTTTCACGTTCTTCT 57.414 25.926 30.99 26.41 45.99 2.85
477 478 8.335256 TGAAAATTTTCACGTTCTTCTTTAGC 57.665 30.769 26.01 0.00 41.88 3.09
478 479 8.188139 TGAAAATTTTCACGTTCTTCTTTAGCT 58.812 29.630 26.01 0.00 41.88 3.32
479 480 8.926715 AAAATTTTCACGTTCTTCTTTAGCTT 57.073 26.923 0.00 0.00 0.00 3.74
480 481 7.914537 AATTTTCACGTTCTTCTTTAGCTTG 57.085 32.000 0.00 0.00 0.00 4.01
481 482 5.418310 TTTCACGTTCTTCTTTAGCTTGG 57.582 39.130 0.00 0.00 0.00 3.61
482 483 2.806244 TCACGTTCTTCTTTAGCTTGGC 59.194 45.455 0.00 0.00 0.00 4.52
483 484 2.095718 CACGTTCTTCTTTAGCTTGGCC 60.096 50.000 0.00 0.00 0.00 5.36
484 485 1.468914 CGTTCTTCTTTAGCTTGGCCC 59.531 52.381 0.00 0.00 0.00 5.80
485 486 2.514803 GTTCTTCTTTAGCTTGGCCCA 58.485 47.619 0.00 0.00 0.00 5.36
486 487 2.200373 TCTTCTTTAGCTTGGCCCAC 57.800 50.000 0.00 0.00 0.00 4.61
487 488 0.804989 CTTCTTTAGCTTGGCCCACG 59.195 55.000 0.00 0.00 0.00 4.94
488 489 1.241315 TTCTTTAGCTTGGCCCACGC 61.241 55.000 3.59 3.59 0.00 5.34
489 490 1.971167 CTTTAGCTTGGCCCACGCA 60.971 57.895 15.24 0.00 36.38 5.24
490 491 1.523154 CTTTAGCTTGGCCCACGCAA 61.523 55.000 15.24 4.18 36.38 4.85
491 492 1.801309 TTTAGCTTGGCCCACGCAAC 61.801 55.000 15.24 0.00 36.38 4.17
492 493 2.967507 TTAGCTTGGCCCACGCAACA 62.968 55.000 15.24 0.00 36.38 3.33
493 494 4.347453 GCTTGGCCCACGCAACAG 62.347 66.667 7.43 0.00 36.38 3.16
494 495 2.906897 CTTGGCCCACGCAACAGT 60.907 61.111 0.00 0.00 36.38 3.55
495 496 2.441164 TTGGCCCACGCAACAGTT 60.441 55.556 0.00 0.00 36.38 3.16
496 497 2.406452 CTTGGCCCACGCAACAGTTC 62.406 60.000 0.00 0.00 36.38 3.01
497 498 4.025401 GGCCCACGCAACAGTTCG 62.025 66.667 0.00 4.27 36.38 3.95
498 499 3.276846 GCCCACGCAACAGTTCGT 61.277 61.111 5.32 5.32 39.79 3.85
499 500 2.830285 GCCCACGCAACAGTTCGTT 61.830 57.895 7.72 0.00 38.83 3.85
500 501 1.725066 CCCACGCAACAGTTCGTTT 59.275 52.632 7.72 0.00 34.86 3.60
501 502 0.591236 CCCACGCAACAGTTCGTTTG 60.591 55.000 7.72 4.01 34.86 2.93
502 503 0.098025 CCACGCAACAGTTCGTTTGT 59.902 50.000 7.72 0.00 34.86 2.83
503 504 1.328069 CCACGCAACAGTTCGTTTGTA 59.672 47.619 7.72 0.00 34.86 2.41
504 505 2.598907 CCACGCAACAGTTCGTTTGTAG 60.599 50.000 7.72 0.00 34.86 2.74
505 506 1.004292 ACGCAACAGTTCGTTTGTAGC 60.004 47.619 5.32 0.00 34.86 3.58
506 507 1.260561 CGCAACAGTTCGTTTGTAGCT 59.739 47.619 0.00 0.00 34.86 3.32
507 508 2.659291 CGCAACAGTTCGTTTGTAGCTC 60.659 50.000 0.00 0.00 34.86 4.09
508 509 2.349532 GCAACAGTTCGTTTGTAGCTCC 60.350 50.000 0.00 0.00 34.86 4.70
509 510 1.779569 ACAGTTCGTTTGTAGCTCCG 58.220 50.000 0.00 0.00 0.00 4.63
510 511 0.438830 CAGTTCGTTTGTAGCTCCGC 59.561 55.000 0.00 0.00 0.00 5.54
511 512 0.669625 AGTTCGTTTGTAGCTCCGCC 60.670 55.000 0.00 0.00 0.00 6.13
512 513 0.947180 GTTCGTTTGTAGCTCCGCCA 60.947 55.000 0.00 0.00 0.00 5.69
515 516 1.626654 CGTTTGTAGCTCCGCCACTG 61.627 60.000 0.00 0.00 0.00 3.66
531 532 2.846371 CTGCTGTCCAGTAGCCAAC 58.154 57.895 0.00 0.00 40.42 3.77
539 540 0.960364 CCAGTAGCCAACCGTGCAAT 60.960 55.000 0.00 0.00 0.00 3.56
544 545 0.537143 AGCCAACCGTGCAATGAGAA 60.537 50.000 0.00 0.00 0.00 2.87
546 547 1.067635 GCCAACCGTGCAATGAGAAAT 60.068 47.619 0.00 0.00 0.00 2.17
547 548 2.610232 GCCAACCGTGCAATGAGAAATT 60.610 45.455 0.00 0.00 0.00 1.82
549 550 2.988493 CAACCGTGCAATGAGAAATTGG 59.012 45.455 0.00 0.00 0.00 3.16
557 562 5.697633 GTGCAATGAGAAATTGGATGTTTGT 59.302 36.000 0.00 0.00 32.25 2.83
563 568 7.452880 TGAGAAATTGGATGTTTGTAAGAGG 57.547 36.000 0.00 0.00 0.00 3.69
579 584 0.107459 GAGGAGCTCACATGAACCCC 60.107 60.000 17.19 0.00 0.00 4.95
603 618 7.302524 CCAATCAGGCAATTTCAAGAAATTTG 58.697 34.615 15.94 12.73 45.67 2.32
605 620 6.172136 TCAGGCAATTTCAAGAAATTTGGA 57.828 33.333 15.94 9.63 45.67 3.53
607 622 7.225725 TCAGGCAATTTCAAGAAATTTGGAAT 58.774 30.769 15.94 0.00 45.67 3.01
635 659 6.554334 TTCCTAAACTACAATGTTGTGAGC 57.446 37.500 8.57 0.00 42.31 4.26
639 663 4.836125 AACTACAATGTTGTGAGCCTTG 57.164 40.909 8.57 0.00 42.31 3.61
640 664 3.820557 ACTACAATGTTGTGAGCCTTGT 58.179 40.909 8.57 0.00 42.31 3.16
643 668 4.045636 ACAATGTTGTGAGCCTTGTTTC 57.954 40.909 0.00 0.00 40.49 2.78
648 673 1.311859 TGTGAGCCTTGTTTCAGCTG 58.688 50.000 7.63 7.63 36.87 4.24
658 683 6.209391 AGCCTTGTTTCAGCTGTTTATGTTAT 59.791 34.615 14.67 0.00 34.99 1.89
660 685 7.370383 CCTTGTTTCAGCTGTTTATGTTATGT 58.630 34.615 14.67 0.00 0.00 2.29
688 713 6.363577 CCAAATAGTGTAGTATGGCACTTG 57.636 41.667 2.48 0.00 42.61 3.16
689 714 5.296780 CCAAATAGTGTAGTATGGCACTTGG 59.703 44.000 2.48 1.75 42.61 3.61
690 715 5.950544 AATAGTGTAGTATGGCACTTGGA 57.049 39.130 2.48 0.00 42.61 3.53
692 717 4.844349 AGTGTAGTATGGCACTTGGATT 57.156 40.909 0.00 0.00 42.61 3.01
695 720 5.057149 GTGTAGTATGGCACTTGGATTAGG 58.943 45.833 0.00 0.00 38.80 2.69
737 762 1.904287 GTGTGCACACCCTCCATTTA 58.096 50.000 34.94 0.00 40.85 1.40
749 774 3.628257 CCCTCCATTTAATTGCTGGGTCT 60.628 47.826 13.36 0.00 0.00 3.85
754 779 1.544724 TTAATTGCTGGGTCTGCCAC 58.455 50.000 0.00 0.00 36.17 5.01
755 780 0.698238 TAATTGCTGGGTCTGCCACT 59.302 50.000 0.00 0.00 36.17 4.00
756 781 0.698238 AATTGCTGGGTCTGCCACTA 59.302 50.000 0.00 0.00 36.17 2.74
757 782 0.698238 ATTGCTGGGTCTGCCACTAA 59.302 50.000 0.00 0.00 36.17 2.24
758 783 0.250727 TTGCTGGGTCTGCCACTAAC 60.251 55.000 0.00 0.00 36.17 2.34
759 784 1.374947 GCTGGGTCTGCCACTAACA 59.625 57.895 0.00 0.00 36.17 2.41
760 785 0.674895 GCTGGGTCTGCCACTAACAG 60.675 60.000 0.00 0.00 36.17 3.16
761 786 0.036010 CTGGGTCTGCCACTAACAGG 60.036 60.000 0.00 0.00 35.78 4.00
762 787 0.766674 TGGGTCTGCCACTAACAGGT 60.767 55.000 0.00 0.00 35.78 4.00
763 788 0.321653 GGGTCTGCCACTAACAGGTG 60.322 60.000 0.00 0.00 35.78 4.00
764 789 0.396811 GGTCTGCCACTAACAGGTGT 59.603 55.000 0.00 0.00 35.78 4.16
765 790 1.621814 GGTCTGCCACTAACAGGTGTA 59.378 52.381 0.00 0.00 35.78 2.90
766 791 2.038033 GGTCTGCCACTAACAGGTGTAA 59.962 50.000 0.00 0.00 35.78 2.41
767 792 3.495453 GGTCTGCCACTAACAGGTGTAAA 60.495 47.826 0.00 0.00 35.78 2.01
768 793 3.497262 GTCTGCCACTAACAGGTGTAAAC 59.503 47.826 0.00 0.00 35.78 2.01
769 794 3.134985 TCTGCCACTAACAGGTGTAAACA 59.865 43.478 0.00 0.00 35.78 2.83
770 795 3.880490 CTGCCACTAACAGGTGTAAACAA 59.120 43.478 0.00 0.00 35.63 2.83
771 796 3.628487 TGCCACTAACAGGTGTAAACAAC 59.372 43.478 0.00 0.00 35.63 3.32
772 797 3.628487 GCCACTAACAGGTGTAAACAACA 59.372 43.478 0.28 0.00 35.62 3.33
773 798 4.261031 GCCACTAACAGGTGTAAACAACAG 60.261 45.833 0.28 0.00 39.29 3.16
774 799 4.879545 CCACTAACAGGTGTAAACAACAGT 59.120 41.667 0.28 0.00 39.29 3.55
778 803 7.439955 CACTAACAGGTGTAAACAACAGTATGA 59.560 37.037 0.28 0.00 39.29 2.15
794 819 6.591935 ACAGTATGAAATCATGTATCCGGTT 58.408 36.000 0.00 0.00 39.69 4.44
804 829 1.092921 GTATCCGGTTTGCGGCATCA 61.093 55.000 2.28 0.00 0.00 3.07
806 831 1.727511 ATCCGGTTTGCGGCATCATG 61.728 55.000 2.28 0.00 0.00 3.07
807 832 2.699768 CCGGTTTGCGGCATCATGT 61.700 57.895 2.28 0.00 0.00 3.21
808 833 1.514657 CGGTTTGCGGCATCATGTG 60.515 57.895 2.28 0.00 0.00 3.21
810 835 0.456653 GGTTTGCGGCATCATGTGAC 60.457 55.000 2.28 0.00 0.00 3.67
811 836 0.240678 GTTTGCGGCATCATGTGACA 59.759 50.000 2.28 0.00 34.57 3.58
812 837 0.240678 TTTGCGGCATCATGTGACAC 59.759 50.000 2.28 0.00 34.57 3.67
814 839 0.888285 TGCGGCATCATGTGACACAA 60.888 50.000 13.23 0.00 34.57 3.33
815 840 0.240678 GCGGCATCATGTGACACAAA 59.759 50.000 13.23 4.38 34.57 2.83
816 841 1.135315 GCGGCATCATGTGACACAAAT 60.135 47.619 13.23 6.68 34.57 2.32
817 842 2.789208 CGGCATCATGTGACACAAATC 58.211 47.619 13.23 0.70 34.57 2.17
818 843 2.162008 CGGCATCATGTGACACAAATCA 59.838 45.455 13.23 0.00 34.57 2.57
819 844 3.181494 CGGCATCATGTGACACAAATCAT 60.181 43.478 13.23 0.00 34.57 2.45
820 845 4.109766 GGCATCATGTGACACAAATCATG 58.890 43.478 13.23 12.43 38.96 3.07
821 846 3.550275 GCATCATGTGACACAAATCATGC 59.450 43.478 13.23 17.58 37.95 4.06
836 864 8.407832 CACAAATCATGCTTTCTACATTATGGA 58.592 33.333 0.00 0.00 0.00 3.41
846 874 7.068716 GCTTTCTACATTATGGAAAACCTGGAT 59.931 37.037 0.00 0.00 37.34 3.41
854 882 8.927411 CATTATGGAAAACCTGGATAAAGGAAT 58.073 33.333 0.00 0.00 40.02 3.01
856 884 5.269189 TGGAAAACCTGGATAAAGGAATCC 58.731 41.667 0.00 0.00 44.96 3.01
860 888 6.347061 AAACCTGGATAAAGGAATCCTGAT 57.653 37.500 0.90 0.00 44.98 2.90
893 923 9.122613 GAAAGTGATTTCAGCAGAAGAAATAAC 57.877 33.333 7.69 7.69 43.60 1.89
895 925 7.814642 AGTGATTTCAGCAGAAGAAATAACAG 58.185 34.615 15.03 0.00 44.18 3.16
901 931 5.013079 TCAGCAGAAGAAATAACAGGGAGAA 59.987 40.000 0.00 0.00 0.00 2.87
902 932 5.707298 CAGCAGAAGAAATAACAGGGAGAAA 59.293 40.000 0.00 0.00 0.00 2.52
903 933 6.207417 CAGCAGAAGAAATAACAGGGAGAAAA 59.793 38.462 0.00 0.00 0.00 2.29
904 934 6.777580 AGCAGAAGAAATAACAGGGAGAAAAA 59.222 34.615 0.00 0.00 0.00 1.94
938 968 6.908825 TGCTAATCATCTGTGGTTGTTTTAC 58.091 36.000 0.00 0.00 29.74 2.01
948 978 3.211045 TGGTTGTTTTACCAGCTCTGAC 58.789 45.455 0.00 0.00 43.14 3.51
949 979 3.118038 TGGTTGTTTTACCAGCTCTGACT 60.118 43.478 0.00 0.00 43.14 3.41
961 991 0.034476 CTCTGACTGAGTGGCAAGCA 59.966 55.000 0.00 0.00 37.99 3.91
970 1000 3.900862 TGGCAAGCAAGGAGGGCA 61.901 61.111 0.00 0.00 0.00 5.36
992 1022 0.467384 AGCGTGGATCAGATTGGAGG 59.533 55.000 0.00 0.00 0.00 4.30
1011 1041 5.250543 TGGAGGAGAAATCATGACTGGTAAA 59.749 40.000 0.00 0.00 0.00 2.01
1017 1047 8.743714 GGAGAAATCATGACTGGTAAATTTCTT 58.256 33.333 14.59 3.44 41.22 2.52
1026 1056 7.466804 TGACTGGTAAATTTCTTCCTGGTATT 58.533 34.615 0.00 0.00 0.00 1.89
1033 1065 7.775053 AAATTTCTTCCTGGTATTGTTGCTA 57.225 32.000 0.00 0.00 0.00 3.49
1044 1076 7.716998 CCTGGTATTGTTGCTATAATCTTCAGT 59.283 37.037 0.00 0.00 0.00 3.41
1055 1087 0.618458 ATCTTCAGTAAAGGCGGGCA 59.382 50.000 3.78 0.00 35.54 5.36
1088 1120 1.076332 ATTTACAGCGCCGTCTGTTC 58.924 50.000 16.82 0.00 44.26 3.18
1233 1265 3.500680 AGCGCACCGAAATCTTTAAAAGA 59.499 39.130 11.47 0.00 42.69 2.52
1257 1289 9.474313 AGAAAGTAGAGAAGAGTATCAGTCATT 57.526 33.333 0.00 0.00 37.82 2.57
1330 1362 3.504520 GGGTGGCAAAAATAAGAAGACGA 59.495 43.478 0.00 0.00 0.00 4.20
1423 1455 0.817229 GCCTGAGGATAGCCACAAGC 60.817 60.000 0.65 2.22 44.25 4.01
1473 1505 2.439156 GAGATGGGTGGTGCTGCC 60.439 66.667 0.00 0.00 37.90 4.85
1505 1537 2.521841 AGGAGGATCTGGAGATGGAGAA 59.478 50.000 0.00 0.00 34.37 2.87
1672 1704 5.567138 ACGGAGCAGGAAAAATAAGAATG 57.433 39.130 0.00 0.00 0.00 2.67
1677 1709 7.378181 GGAGCAGGAAAAATAAGAATGTGAAA 58.622 34.615 0.00 0.00 0.00 2.69
1686 1718 8.937634 AAAATAAGAATGTGAAAGATGATGCC 57.062 30.769 0.00 0.00 0.00 4.40
1713 1745 1.201429 AGGGCAGTGGGAAGGTAGTG 61.201 60.000 0.00 0.00 0.00 2.74
1721 1753 4.408921 CAGTGGGAAGGTAGTGGATGATAA 59.591 45.833 0.00 0.00 0.00 1.75
1788 1820 1.218047 CGATGCTTCGGAGGAACCA 59.782 57.895 13.82 0.00 41.74 3.67
1836 1868 7.623089 GCTGAAGAAAGTGATGTATCAGTTCAC 60.623 40.741 13.64 11.26 46.64 3.18
1856 1888 2.102252 ACGAATCTGAGGATGAAGAGCC 59.898 50.000 0.00 0.00 31.75 4.70
1862 1894 4.293494 TCTGAGGATGAAGAGCCTAATGT 58.707 43.478 0.00 0.00 38.46 2.71
1872 1904 4.098914 AGAGCCTAATGTGGTTGAAACA 57.901 40.909 0.00 0.00 0.00 2.83
1947 1979 9.253832 TCTAGTTCAGAATCAGAAGAAATCTCT 57.746 33.333 0.00 0.00 35.73 3.10
2028 2060 7.887996 TTTATGCAACACATTTCTGATTTCC 57.112 32.000 0.00 0.00 40.38 3.13
2083 2116 5.920193 TTCTCATGGATGGTTTCATTTCC 57.080 39.130 0.00 0.00 32.98 3.13
2163 2196 3.123050 GGAAGTTGCTGCAATTTTTCGT 58.877 40.909 21.52 6.36 0.00 3.85
2171 2204 5.627172 TGCTGCAATTTTTCGTGTATAGTC 58.373 37.500 0.00 0.00 0.00 2.59
2185 2218 5.593502 CGTGTATAGTCCTATATCTTCCCCC 59.406 48.000 0.00 0.00 31.45 5.40
2189 2222 8.246615 TGTATAGTCCTATATCTTCCCCCTTTT 58.753 37.037 0.00 0.00 31.45 2.27
2190 2223 9.113797 GTATAGTCCTATATCTTCCCCCTTTTT 57.886 37.037 0.00 0.00 31.45 1.94
2399 2432 7.341256 AGTTAAGGATCTTCCGTATAAGTCACA 59.659 37.037 0.00 0.00 42.75 3.58
2439 2472 3.844577 AGCATGCTCACAGCTTAAAAG 57.155 42.857 16.30 0.00 42.97 2.27
2528 2561 4.030913 TCGAGGGATCAACCTTAAGACAT 58.969 43.478 3.36 0.00 42.10 3.06
2557 2590 4.530875 AGGCAGATGATAAACTGGAAAGG 58.469 43.478 0.00 0.00 35.05 3.11
2610 3014 5.438761 ACCTTCTGTTCTGTTTGTTATGC 57.561 39.130 0.00 0.00 0.00 3.14
2637 3041 3.555117 ACTAAGGTAGGAGGTTGGTGA 57.445 47.619 0.00 0.00 0.00 4.02
2822 3226 5.765182 CACAAGGACCTTTTACATGTCTCTT 59.235 40.000 3.21 0.00 0.00 2.85
2967 3371 0.393537 CCCTTGGTGACAGGATGAGC 60.394 60.000 0.00 0.00 44.54 4.26
3248 3652 8.015185 AGCATTTATAATGTCTTTCCATGCTT 57.985 30.769 8.86 0.00 41.55 3.91
4028 4438 3.628942 TCTTTTGCATCATAATGAGCGCT 59.371 39.130 11.27 11.27 34.61 5.92
4310 4722 6.149474 AGTTCAGTTTACAGGTATGACATTGC 59.851 38.462 0.00 0.00 0.00 3.56
4575 4992 4.022068 GGAGCTAGATGAGATGGAGTTGAG 60.022 50.000 0.00 0.00 0.00 3.02
4594 5011 0.605319 GTCGGTCCATGAACCTTGCA 60.605 55.000 0.00 0.00 37.15 4.08
4620 5037 0.518636 GTTGCAGAGATGCTCGCAAA 59.481 50.000 19.82 8.72 44.33 3.68
4636 5053 2.413837 GCAAACTTCTCCTTGTCGCTA 58.586 47.619 0.00 0.00 0.00 4.26
4771 5188 1.098050 ACGTCTTTACCCGTATCGCT 58.902 50.000 0.00 0.00 35.16 4.93
4939 5367 3.692406 GTCCGGCGTGTCTTCCCT 61.692 66.667 6.01 0.00 0.00 4.20
4951 5379 1.891150 GTCTTCCCTGTCTCGGTTACA 59.109 52.381 0.00 0.00 0.00 2.41
5170 5608 2.019984 GTTCCATCTGCCCTGAACATC 58.980 52.381 0.00 0.00 37.60 3.06
5187 5626 7.278868 CCTGAACATCTGAGGTTAACTAATGAC 59.721 40.741 7.77 0.00 0.00 3.06
5188 5627 7.676004 TGAACATCTGAGGTTAACTAATGACA 58.324 34.615 7.77 0.00 0.00 3.58
5219 5659 4.518970 AGACGGTGCTTTGTCATAAAACAT 59.481 37.500 5.76 0.00 37.58 2.71
5287 5728 3.054361 TGATGAGGGGAAGAAGCCTAAAC 60.054 47.826 0.00 0.00 0.00 2.01
5290 5731 3.518303 TGAGGGGAAGAAGCCTAAACTAC 59.482 47.826 0.00 0.00 0.00 2.73
5296 5739 5.046807 GGGAAGAAGCCTAAACTACACTACA 60.047 44.000 0.00 0.00 0.00 2.74
5441 5887 5.031066 AGGTACACGCACCAACATATTAT 57.969 39.130 0.00 0.00 41.40 1.28
5448 5894 4.750098 ACGCACCAACATATTATAGTCTGC 59.250 41.667 0.00 0.00 0.00 4.26
5488 5944 8.354426 TCACATGAATCTTGTTTATATGCATGG 58.646 33.333 10.16 0.00 36.00 3.66
5489 5945 8.354426 CACATGAATCTTGTTTATATGCATGGA 58.646 33.333 10.16 0.00 36.00 3.41
5490 5946 8.916062 ACATGAATCTTGTTTATATGCATGGAA 58.084 29.630 10.16 0.00 36.00 3.53
5491 5947 9.752961 CATGAATCTTGTTTATATGCATGGAAA 57.247 29.630 10.16 6.60 0.00 3.13
5704 6167 1.000607 CTCGAACTCGGAAACCTGACA 60.001 52.381 0.00 0.00 40.29 3.58
5711 6174 2.018515 TCGGAAACCTGACAACAAACC 58.981 47.619 0.00 0.00 0.00 3.27
5738 6208 3.817647 AGAACAAGCTTCATCAGTGAACC 59.182 43.478 0.00 0.00 39.36 3.62
5746 6216 4.217118 GCTTCATCAGTGAACCATTGAAGT 59.783 41.667 24.20 0.00 41.18 3.01
5749 6219 4.999311 TCATCAGTGAACCATTGAAGTCAG 59.001 41.667 0.00 0.00 34.05 3.51
5789 6259 0.548682 AGCCAGGAGGAAGATGTGGT 60.549 55.000 0.00 0.00 36.89 4.16
5797 6267 1.499007 AGGAAGATGTGGTTGGTTGGT 59.501 47.619 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.181021 GGGCGCCCGTATATCTCG 59.819 66.667 33.60 0.00 0.00 4.04
15 16 1.376609 GCATAAGCCACTGGAACGGG 61.377 60.000 0.00 0.00 34.52 5.28
16 17 1.705337 CGCATAAGCCACTGGAACGG 61.705 60.000 0.00 0.00 38.08 4.44
17 18 0.739462 TCGCATAAGCCACTGGAACG 60.739 55.000 0.00 0.00 37.52 3.95
18 19 1.398390 CTTCGCATAAGCCACTGGAAC 59.602 52.381 0.00 0.00 37.52 3.62
19 20 1.737838 CTTCGCATAAGCCACTGGAA 58.262 50.000 0.00 0.00 37.52 3.53
20 21 0.744414 GCTTCGCATAAGCCACTGGA 60.744 55.000 9.16 0.00 37.30 3.86
21 22 1.723870 GCTTCGCATAAGCCACTGG 59.276 57.895 9.16 0.00 37.30 4.00
27 28 2.481471 GGGTGGGCTTCGCATAAGC 61.481 63.158 11.42 11.42 42.30 3.09
28 29 1.077787 TGGGTGGGCTTCGCATAAG 60.078 57.895 0.00 0.00 0.00 1.73
29 30 1.377987 GTGGGTGGGCTTCGCATAA 60.378 57.895 3.30 0.00 0.00 1.90
30 31 2.270850 GTGGGTGGGCTTCGCATA 59.729 61.111 3.30 0.00 0.00 3.14
31 32 4.740822 GGTGGGTGGGCTTCGCAT 62.741 66.667 3.30 0.00 0.00 4.73
35 36 4.366684 CAGGGGTGGGTGGGCTTC 62.367 72.222 0.00 0.00 0.00 3.86
36 37 4.938756 TCAGGGGTGGGTGGGCTT 62.939 66.667 0.00 0.00 0.00 4.35
37 38 4.938756 TTCAGGGGTGGGTGGGCT 62.939 66.667 0.00 0.00 0.00 5.19
38 39 2.956077 TTTTTCAGGGGTGGGTGGGC 62.956 60.000 0.00 0.00 0.00 5.36
39 40 1.234529 TTTTTCAGGGGTGGGTGGG 59.765 57.895 0.00 0.00 0.00 4.61
64 65 1.320507 TAAAAACGGGTGGGCTTCAC 58.679 50.000 2.81 2.81 45.34 3.18
65 66 2.296073 ATAAAAACGGGTGGGCTTCA 57.704 45.000 0.00 0.00 0.00 3.02
66 67 3.006003 TGAAATAAAAACGGGTGGGCTTC 59.994 43.478 0.00 0.00 0.00 3.86
67 68 2.966516 TGAAATAAAAACGGGTGGGCTT 59.033 40.909 0.00 0.00 0.00 4.35
68 69 2.297880 GTGAAATAAAAACGGGTGGGCT 59.702 45.455 0.00 0.00 0.00 5.19
69 70 2.036089 TGTGAAATAAAAACGGGTGGGC 59.964 45.455 0.00 0.00 0.00 5.36
70 71 3.305744 CCTGTGAAATAAAAACGGGTGGG 60.306 47.826 0.00 0.00 35.89 4.61
71 72 3.305744 CCCTGTGAAATAAAAACGGGTGG 60.306 47.826 0.00 0.00 38.48 4.61
72 73 3.305744 CCCCTGTGAAATAAAAACGGGTG 60.306 47.826 0.00 0.00 38.48 4.61
73 74 2.894765 CCCCTGTGAAATAAAAACGGGT 59.105 45.455 0.00 0.00 38.48 5.28
74 75 2.894765 ACCCCTGTGAAATAAAAACGGG 59.105 45.455 0.00 0.00 39.64 5.28
75 76 5.907866 ATACCCCTGTGAAATAAAAACGG 57.092 39.130 0.00 0.00 0.00 4.44
76 77 7.619964 ACTATACCCCTGTGAAATAAAAACG 57.380 36.000 0.00 0.00 0.00 3.60
80 81 9.675464 CTGTAAACTATACCCCTGTGAAATAAA 57.325 33.333 0.00 0.00 0.00 1.40
81 82 8.269317 CCTGTAAACTATACCCCTGTGAAATAA 58.731 37.037 0.00 0.00 0.00 1.40
82 83 7.403813 ACCTGTAAACTATACCCCTGTGAAATA 59.596 37.037 0.00 0.00 0.00 1.40
83 84 6.216868 ACCTGTAAACTATACCCCTGTGAAAT 59.783 38.462 0.00 0.00 0.00 2.17
84 85 5.548836 ACCTGTAAACTATACCCCTGTGAAA 59.451 40.000 0.00 0.00 0.00 2.69
85 86 5.046159 CACCTGTAAACTATACCCCTGTGAA 60.046 44.000 0.00 0.00 0.00 3.18
86 87 4.468510 CACCTGTAAACTATACCCCTGTGA 59.531 45.833 0.00 0.00 0.00 3.58
87 88 4.224370 ACACCTGTAAACTATACCCCTGTG 59.776 45.833 0.00 0.00 0.00 3.66
88 89 4.432316 ACACCTGTAAACTATACCCCTGT 58.568 43.478 0.00 0.00 0.00 4.00
89 90 6.742559 ATACACCTGTAAACTATACCCCTG 57.257 41.667 0.00 0.00 33.76 4.45
90 91 6.100714 CCAATACACCTGTAAACTATACCCCT 59.899 42.308 0.00 0.00 33.76 4.79
91 92 6.293698 CCAATACACCTGTAAACTATACCCC 58.706 44.000 0.00 0.00 33.76 4.95
92 93 6.293698 CCCAATACACCTGTAAACTATACCC 58.706 44.000 0.00 0.00 33.76 3.69
93 94 5.761726 GCCCAATACACCTGTAAACTATACC 59.238 44.000 0.00 0.00 33.76 2.73
94 95 5.761726 GGCCCAATACACCTGTAAACTATAC 59.238 44.000 0.00 0.00 33.76 1.47
95 96 5.163174 GGGCCCAATACACCTGTAAACTATA 60.163 44.000 19.95 0.00 33.76 1.31
96 97 4.385977 GGGCCCAATACACCTGTAAACTAT 60.386 45.833 19.95 0.00 33.76 2.12
97 98 3.054213 GGGCCCAATACACCTGTAAACTA 60.054 47.826 19.95 0.00 33.76 2.24
98 99 2.291346 GGGCCCAATACACCTGTAAACT 60.291 50.000 19.95 0.00 33.76 2.66
99 100 2.097036 GGGCCCAATACACCTGTAAAC 58.903 52.381 19.95 0.00 33.76 2.01
100 101 1.006162 GGGGCCCAATACACCTGTAAA 59.994 52.381 26.86 0.00 33.76 2.01
101 102 0.626916 GGGGCCCAATACACCTGTAA 59.373 55.000 26.86 0.00 33.76 2.41
102 103 0.550393 TGGGGCCCAATACACCTGTA 60.550 55.000 26.55 0.00 34.67 2.74
103 104 1.439524 TTGGGGCCCAATACACCTGT 61.440 55.000 34.01 0.00 38.75 4.00
104 105 0.252012 TTTGGGGCCCAATACACCTG 60.252 55.000 37.27 0.00 43.55 4.00
105 106 0.489567 TTTTGGGGCCCAATACACCT 59.510 50.000 37.27 0.00 43.55 4.00
106 107 0.611200 GTTTTGGGGCCCAATACACC 59.389 55.000 38.22 21.41 43.55 4.16
107 108 0.245266 CGTTTTGGGGCCCAATACAC 59.755 55.000 39.78 31.86 43.55 2.90
108 109 0.900647 CCGTTTTGGGGCCCAATACA 60.901 55.000 39.78 26.28 43.55 2.29
109 110 1.894512 CCGTTTTGGGGCCCAATAC 59.105 57.895 35.51 35.51 43.55 1.89
110 111 1.985116 GCCGTTTTGGGGCCCAATA 60.985 57.895 37.27 29.77 43.55 1.90
111 112 3.318384 GCCGTTTTGGGGCCCAAT 61.318 61.111 37.27 0.00 43.55 3.16
118 119 1.007849 CTTGGTTCGCCGTTTTGGG 60.008 57.895 0.00 0.00 41.18 4.12
119 120 1.660264 GCTTGGTTCGCCGTTTTGG 60.660 57.895 0.00 0.00 41.18 3.28
120 121 2.008697 CGCTTGGTTCGCCGTTTTG 61.009 57.895 0.00 0.00 41.18 2.44
121 122 2.330041 CGCTTGGTTCGCCGTTTT 59.670 55.556 0.00 0.00 41.18 2.43
122 123 3.656045 CCGCTTGGTTCGCCGTTT 61.656 61.111 0.00 0.00 41.18 3.60
137 138 3.971109 GAGAAACCCTTCGGCCCCG 62.971 68.421 0.00 0.00 36.61 5.73
138 139 1.269703 TAGAGAAACCCTTCGGCCCC 61.270 60.000 0.00 0.00 36.61 5.80
139 140 0.837940 ATAGAGAAACCCTTCGGCCC 59.162 55.000 0.00 0.00 36.61 5.80
140 141 1.202663 GGATAGAGAAACCCTTCGGCC 60.203 57.143 0.00 0.00 36.61 6.13
141 142 1.485066 TGGATAGAGAAACCCTTCGGC 59.515 52.381 0.00 0.00 36.61 5.54
142 143 3.553096 CGATGGATAGAGAAACCCTTCGG 60.553 52.174 0.00 0.00 40.45 4.30
143 144 3.068307 ACGATGGATAGAGAAACCCTTCG 59.932 47.826 0.00 0.00 45.73 3.79
144 145 4.501743 GGACGATGGATAGAGAAACCCTTC 60.502 50.000 0.00 0.00 0.00 3.46
145 146 3.388350 GGACGATGGATAGAGAAACCCTT 59.612 47.826 0.00 0.00 0.00 3.95
146 147 2.966516 GGACGATGGATAGAGAAACCCT 59.033 50.000 0.00 0.00 0.00 4.34
147 148 2.037381 GGGACGATGGATAGAGAAACCC 59.963 54.545 0.00 0.00 0.00 4.11
148 149 2.037381 GGGGACGATGGATAGAGAAACC 59.963 54.545 0.00 0.00 0.00 3.27
149 150 3.388345 GGGGACGATGGATAGAGAAAC 57.612 52.381 0.00 0.00 0.00 2.78
174 175 3.665675 AAGGTTAGCGAGCAGGCGG 62.666 63.158 0.00 0.00 38.18 6.13
175 176 1.696832 GAAAGGTTAGCGAGCAGGCG 61.697 60.000 0.00 0.00 38.18 5.52
176 177 1.696832 CGAAAGGTTAGCGAGCAGGC 61.697 60.000 0.00 0.00 0.00 4.85
177 178 0.389948 ACGAAAGGTTAGCGAGCAGG 60.390 55.000 0.00 0.00 0.00 4.85
178 179 0.992802 GACGAAAGGTTAGCGAGCAG 59.007 55.000 0.00 0.00 0.00 4.24
179 180 0.389426 GGACGAAAGGTTAGCGAGCA 60.389 55.000 0.00 0.00 0.00 4.26
180 181 0.389426 TGGACGAAAGGTTAGCGAGC 60.389 55.000 0.00 0.00 0.00 5.03
181 182 1.993370 CTTGGACGAAAGGTTAGCGAG 59.007 52.381 0.00 0.00 0.00 5.03
182 183 1.938016 GCTTGGACGAAAGGTTAGCGA 60.938 52.381 0.00 0.00 0.00 4.93
183 184 0.442699 GCTTGGACGAAAGGTTAGCG 59.557 55.000 0.00 0.00 0.00 4.26
184 185 0.803117 GGCTTGGACGAAAGGTTAGC 59.197 55.000 0.00 0.00 0.00 3.09
185 186 1.076332 CGGCTTGGACGAAAGGTTAG 58.924 55.000 0.00 0.00 35.20 2.34
186 187 0.952010 GCGGCTTGGACGAAAGGTTA 60.952 55.000 0.00 0.00 35.20 2.85
187 188 2.258726 GCGGCTTGGACGAAAGGTT 61.259 57.895 0.00 0.00 35.20 3.50
188 189 2.668550 GCGGCTTGGACGAAAGGT 60.669 61.111 0.00 0.00 35.20 3.50
189 190 3.431725 GGCGGCTTGGACGAAAGG 61.432 66.667 0.00 0.00 35.20 3.11
190 191 3.788766 CGGCGGCTTGGACGAAAG 61.789 66.667 7.61 0.00 42.31 2.62
257 258 4.481112 GGCAGCGGGCGATTTGTG 62.481 66.667 0.00 0.00 46.16 3.33
325 326 3.998672 TCGTGGGTCGGCCAACTC 61.999 66.667 12.77 0.00 36.53 3.01
326 327 4.309950 GTCGTGGGTCGGCCAACT 62.310 66.667 12.77 0.00 36.53 3.16
349 350 2.349155 GCTATACCAAAATACGTGCGGC 60.349 50.000 0.00 0.00 0.00 6.53
350 351 3.128349 AGCTATACCAAAATACGTGCGG 58.872 45.455 0.00 0.00 0.00 5.69
351 352 4.506654 AGAAGCTATACCAAAATACGTGCG 59.493 41.667 0.00 0.00 0.00 5.34
352 353 5.986004 AGAAGCTATACCAAAATACGTGC 57.014 39.130 0.00 0.00 0.00 5.34
353 354 8.234546 ACAAAAGAAGCTATACCAAAATACGTG 58.765 33.333 0.00 0.00 0.00 4.49
354 355 8.331730 ACAAAAGAAGCTATACCAAAATACGT 57.668 30.769 0.00 0.00 0.00 3.57
355 356 9.620660 AAACAAAAGAAGCTATACCAAAATACG 57.379 29.630 0.00 0.00 0.00 3.06
384 385 9.778741 TTGTTACAAGATGAAAAGTGAGTAGAT 57.221 29.630 0.00 0.00 0.00 1.98
385 386 9.607988 TTTGTTACAAGATGAAAAGTGAGTAGA 57.392 29.630 0.00 0.00 0.00 2.59
388 389 8.137437 CCATTTGTTACAAGATGAAAAGTGAGT 58.863 33.333 16.12 0.00 0.00 3.41
389 390 7.596248 CCCATTTGTTACAAGATGAAAAGTGAG 59.404 37.037 16.12 3.71 0.00 3.51
390 391 7.286546 TCCCATTTGTTACAAGATGAAAAGTGA 59.713 33.333 16.12 5.79 0.00 3.41
391 392 7.432869 TCCCATTTGTTACAAGATGAAAAGTG 58.567 34.615 16.12 4.64 0.00 3.16
392 393 7.595819 TCCCATTTGTTACAAGATGAAAAGT 57.404 32.000 16.12 0.00 0.00 2.66
393 394 7.925483 TGTTCCCATTTGTTACAAGATGAAAAG 59.075 33.333 16.12 5.34 0.00 2.27
394 395 7.786030 TGTTCCCATTTGTTACAAGATGAAAA 58.214 30.769 16.12 10.00 0.00 2.29
395 396 7.286546 TCTGTTCCCATTTGTTACAAGATGAAA 59.713 33.333 16.12 10.23 0.00 2.69
396 397 6.775142 TCTGTTCCCATTTGTTACAAGATGAA 59.225 34.615 16.12 8.59 0.00 2.57
397 398 6.303054 TCTGTTCCCATTTGTTACAAGATGA 58.697 36.000 16.12 4.18 0.00 2.92
398 399 6.349611 CCTCTGTTCCCATTTGTTACAAGATG 60.350 42.308 0.00 5.76 0.00 2.90
399 400 5.711976 CCTCTGTTCCCATTTGTTACAAGAT 59.288 40.000 0.00 0.00 0.00 2.40
400 401 5.070001 CCTCTGTTCCCATTTGTTACAAGA 58.930 41.667 0.00 0.00 0.00 3.02
401 402 4.827284 ACCTCTGTTCCCATTTGTTACAAG 59.173 41.667 0.00 0.00 0.00 3.16
402 403 4.798882 ACCTCTGTTCCCATTTGTTACAA 58.201 39.130 0.00 0.00 0.00 2.41
403 404 4.447138 ACCTCTGTTCCCATTTGTTACA 57.553 40.909 0.00 0.00 0.00 2.41
404 405 6.002082 AGTAACCTCTGTTCCCATTTGTTAC 58.998 40.000 0.00 0.00 37.90 2.50
405 406 6.195600 AGTAACCTCTGTTCCCATTTGTTA 57.804 37.500 0.00 0.00 35.87 2.41
406 407 5.061721 AGTAACCTCTGTTCCCATTTGTT 57.938 39.130 0.00 0.00 35.87 2.83
407 408 4.724279 AGTAACCTCTGTTCCCATTTGT 57.276 40.909 0.00 0.00 35.87 2.83
408 409 6.238648 AGTAAGTAACCTCTGTTCCCATTTG 58.761 40.000 0.00 0.00 35.87 2.32
409 410 6.449830 AGTAAGTAACCTCTGTTCCCATTT 57.550 37.500 0.00 0.00 35.87 2.32
410 411 7.563724 TTAGTAAGTAACCTCTGTTCCCATT 57.436 36.000 0.00 0.00 35.87 3.16
411 412 7.402071 TCATTAGTAAGTAACCTCTGTTCCCAT 59.598 37.037 0.00 0.00 35.87 4.00
412 413 6.727231 TCATTAGTAAGTAACCTCTGTTCCCA 59.273 38.462 0.00 0.00 35.87 4.37
413 414 7.040494 GTCATTAGTAAGTAACCTCTGTTCCC 58.960 42.308 0.00 0.00 35.87 3.97
414 415 7.609056 TGTCATTAGTAAGTAACCTCTGTTCC 58.391 38.462 0.00 0.00 35.87 3.62
415 416 8.923683 GTTGTCATTAGTAAGTAACCTCTGTTC 58.076 37.037 0.00 0.00 35.87 3.18
416 417 7.597743 CGTTGTCATTAGTAAGTAACCTCTGTT 59.402 37.037 0.00 0.00 38.52 3.16
417 418 7.088905 CGTTGTCATTAGTAAGTAACCTCTGT 58.911 38.462 0.00 0.00 0.00 3.41
418 419 7.088905 ACGTTGTCATTAGTAAGTAACCTCTG 58.911 38.462 0.00 0.00 0.00 3.35
419 420 7.224522 ACGTTGTCATTAGTAAGTAACCTCT 57.775 36.000 0.00 0.00 0.00 3.69
420 421 7.596248 TGAACGTTGTCATTAGTAAGTAACCTC 59.404 37.037 5.00 0.00 0.00 3.85
421 422 7.436118 TGAACGTTGTCATTAGTAAGTAACCT 58.564 34.615 5.00 0.00 0.00 3.50
422 423 7.596248 TCTGAACGTTGTCATTAGTAAGTAACC 59.404 37.037 5.00 0.00 0.00 2.85
423 424 8.511465 TCTGAACGTTGTCATTAGTAAGTAAC 57.489 34.615 5.00 0.00 0.00 2.50
424 425 9.701098 ATTCTGAACGTTGTCATTAGTAAGTAA 57.299 29.630 5.00 0.00 0.00 2.24
425 426 9.701098 AATTCTGAACGTTGTCATTAGTAAGTA 57.299 29.630 5.00 0.00 0.00 2.24
426 427 8.603242 AATTCTGAACGTTGTCATTAGTAAGT 57.397 30.769 5.00 0.00 0.00 2.24
427 428 9.318041 CAAATTCTGAACGTTGTCATTAGTAAG 57.682 33.333 5.00 0.00 0.00 2.34
428 429 9.047371 TCAAATTCTGAACGTTGTCATTAGTAA 57.953 29.630 5.00 0.00 0.00 2.24
429 430 8.596271 TCAAATTCTGAACGTTGTCATTAGTA 57.404 30.769 5.00 0.00 0.00 1.82
430 431 7.490962 TCAAATTCTGAACGTTGTCATTAGT 57.509 32.000 5.00 0.00 0.00 2.24
431 432 8.781067 TTTCAAATTCTGAACGTTGTCATTAG 57.219 30.769 5.00 0.00 43.90 1.73
432 433 9.743057 ATTTTCAAATTCTGAACGTTGTCATTA 57.257 25.926 5.00 0.00 43.90 1.90
433 434 8.647143 ATTTTCAAATTCTGAACGTTGTCATT 57.353 26.923 5.00 0.00 43.90 2.57
434 435 8.647143 AATTTTCAAATTCTGAACGTTGTCAT 57.353 26.923 5.00 0.00 43.90 3.06
435 436 8.472683 AAATTTTCAAATTCTGAACGTTGTCA 57.527 26.923 5.00 0.00 43.90 3.58
436 437 9.408731 GAAAATTTTCAAATTCTGAACGTTGTC 57.591 29.630 23.06 0.00 43.90 3.18
437 438 8.930760 TGAAAATTTTCAAATTCTGAACGTTGT 58.069 25.926 27.22 0.00 43.90 3.32
452 453 8.188139 AGCTAAAGAAGAACGTGAAAATTTTCA 58.812 29.630 26.01 26.01 44.31 2.69
453 454 8.561932 AGCTAAAGAAGAACGTGAAAATTTTC 57.438 30.769 21.60 21.60 37.69 2.29
454 455 8.807581 CAAGCTAAAGAAGAACGTGAAAATTTT 58.192 29.630 2.28 2.28 0.00 1.82
455 456 7.435192 CCAAGCTAAAGAAGAACGTGAAAATTT 59.565 33.333 0.00 0.00 0.00 1.82
456 457 6.918022 CCAAGCTAAAGAAGAACGTGAAAATT 59.082 34.615 0.00 0.00 0.00 1.82
457 458 6.438763 CCAAGCTAAAGAAGAACGTGAAAAT 58.561 36.000 0.00 0.00 0.00 1.82
458 459 5.732247 GCCAAGCTAAAGAAGAACGTGAAAA 60.732 40.000 0.00 0.00 0.00 2.29
459 460 4.261031 GCCAAGCTAAAGAAGAACGTGAAA 60.261 41.667 0.00 0.00 0.00 2.69
460 461 3.250040 GCCAAGCTAAAGAAGAACGTGAA 59.750 43.478 0.00 0.00 0.00 3.18
461 462 2.806244 GCCAAGCTAAAGAAGAACGTGA 59.194 45.455 0.00 0.00 0.00 4.35
462 463 2.095718 GGCCAAGCTAAAGAAGAACGTG 60.096 50.000 0.00 0.00 0.00 4.49
463 464 2.152016 GGCCAAGCTAAAGAAGAACGT 58.848 47.619 0.00 0.00 0.00 3.99
464 465 1.468914 GGGCCAAGCTAAAGAAGAACG 59.531 52.381 4.39 0.00 0.00 3.95
465 466 2.229062 GTGGGCCAAGCTAAAGAAGAAC 59.771 50.000 8.40 0.00 0.00 3.01
466 467 2.514803 GTGGGCCAAGCTAAAGAAGAA 58.485 47.619 8.40 0.00 0.00 2.52
467 468 1.610624 CGTGGGCCAAGCTAAAGAAGA 60.611 52.381 8.40 0.00 0.00 2.87
468 469 0.804989 CGTGGGCCAAGCTAAAGAAG 59.195 55.000 8.40 0.00 0.00 2.85
469 470 1.241315 GCGTGGGCCAAGCTAAAGAA 61.241 55.000 32.91 0.00 36.06 2.52
470 471 1.674322 GCGTGGGCCAAGCTAAAGA 60.674 57.895 32.91 0.00 36.06 2.52
471 472 1.523154 TTGCGTGGGCCAAGCTAAAG 61.523 55.000 37.39 12.75 39.43 1.85
472 473 1.529478 TTGCGTGGGCCAAGCTAAA 60.529 52.632 37.39 25.14 39.43 1.85
473 474 2.114199 TTGCGTGGGCCAAGCTAA 59.886 55.556 37.39 27.64 39.43 3.09
474 475 2.671619 GTTGCGTGGGCCAAGCTA 60.672 61.111 37.39 30.38 39.43 3.32
475 476 4.892965 TGTTGCGTGGGCCAAGCT 62.893 61.111 37.39 0.00 39.43 3.74
476 477 4.347453 CTGTTGCGTGGGCCAAGC 62.347 66.667 33.41 33.41 39.17 4.01
477 478 2.406452 GAACTGTTGCGTGGGCCAAG 62.406 60.000 15.62 15.62 38.85 3.61
478 479 2.441164 AACTGTTGCGTGGGCCAA 60.441 55.556 8.40 0.00 38.85 4.52
479 480 2.904866 GAACTGTTGCGTGGGCCA 60.905 61.111 0.00 0.00 38.85 5.36
480 481 4.025401 CGAACTGTTGCGTGGGCC 62.025 66.667 0.00 0.00 38.85 5.80
481 482 2.331019 AAACGAACTGTTGCGTGGGC 62.331 55.000 15.14 0.00 40.84 5.36
482 483 0.591236 CAAACGAACTGTTGCGTGGG 60.591 55.000 15.14 9.14 40.84 4.61
483 484 0.098025 ACAAACGAACTGTTGCGTGG 59.902 50.000 15.14 13.23 40.84 4.94
484 485 2.624766 CTACAAACGAACTGTTGCGTG 58.375 47.619 15.14 8.92 40.84 5.34
485 486 1.004292 GCTACAAACGAACTGTTGCGT 60.004 47.619 0.00 5.04 40.84 5.24
486 487 1.260561 AGCTACAAACGAACTGTTGCG 59.739 47.619 0.00 4.39 46.03 4.85
487 488 2.349532 GGAGCTACAAACGAACTGTTGC 60.350 50.000 0.00 11.99 43.17 4.17
488 489 2.096909 CGGAGCTACAAACGAACTGTTG 60.097 50.000 0.00 0.00 40.84 3.33
489 490 2.132762 CGGAGCTACAAACGAACTGTT 58.867 47.619 0.00 0.00 44.59 3.16
490 491 1.779569 CGGAGCTACAAACGAACTGT 58.220 50.000 0.00 0.00 0.00 3.55
509 510 1.743252 GCTACTGGACAGCAGTGGC 60.743 63.158 0.00 0.00 46.63 5.01
510 511 1.078848 GGCTACTGGACAGCAGTGG 60.079 63.158 0.00 0.00 40.95 4.00
511 512 0.035317 TTGGCTACTGGACAGCAGTG 59.965 55.000 0.00 0.00 40.95 3.66
512 513 0.035458 GTTGGCTACTGGACAGCAGT 59.965 55.000 0.00 0.00 40.95 4.40
515 516 1.741770 CGGTTGGCTACTGGACAGC 60.742 63.158 0.00 0.00 38.35 4.40
524 525 0.323302 TCTCATTGCACGGTTGGCTA 59.677 50.000 0.00 0.00 0.00 3.93
529 530 2.890311 TCCAATTTCTCATTGCACGGTT 59.110 40.909 0.00 0.00 0.00 4.44
530 531 2.513753 TCCAATTTCTCATTGCACGGT 58.486 42.857 0.00 0.00 0.00 4.83
531 532 3.119388 ACATCCAATTTCTCATTGCACGG 60.119 43.478 0.00 0.00 0.00 4.94
539 540 7.230747 TCCTCTTACAAACATCCAATTTCTCA 58.769 34.615 0.00 0.00 0.00 3.27
544 545 5.574188 AGCTCCTCTTACAAACATCCAATT 58.426 37.500 0.00 0.00 0.00 2.32
546 547 4.041567 TGAGCTCCTCTTACAAACATCCAA 59.958 41.667 12.15 0.00 0.00 3.53
547 548 3.582647 TGAGCTCCTCTTACAAACATCCA 59.417 43.478 12.15 0.00 0.00 3.41
549 550 4.569943 TGTGAGCTCCTCTTACAAACATC 58.430 43.478 12.15 0.00 38.21 3.06
557 562 2.501723 GGGTTCATGTGAGCTCCTCTTA 59.498 50.000 12.15 0.00 0.00 2.10
563 568 2.019984 GATTGGGGTTCATGTGAGCTC 58.980 52.381 6.82 6.82 0.00 4.09
579 584 7.173562 TCCAAATTTCTTGAAATTGCCTGATTG 59.826 33.333 18.37 12.16 33.08 2.67
635 659 7.370383 ACATAACATAAACAGCTGAAACAAGG 58.630 34.615 23.35 5.90 0.00 3.61
639 663 8.003784 GCAAAACATAACATAAACAGCTGAAAC 58.996 33.333 23.35 0.00 0.00 2.78
640 664 7.170658 GGCAAAACATAACATAAACAGCTGAAA 59.829 33.333 23.35 5.21 0.00 2.69
643 668 5.925397 TGGCAAAACATAACATAAACAGCTG 59.075 36.000 13.48 13.48 0.00 4.24
658 683 6.349777 GCCATACTACACTATTTGGCAAAACA 60.350 38.462 17.70 7.09 46.87 2.83
660 685 6.202516 GCCATACTACACTATTTGGCAAAA 57.797 37.500 17.70 5.78 46.87 2.44
672 697 5.057149 CCTAATCCAAGTGCCATACTACAC 58.943 45.833 0.00 0.00 39.18 2.90
681 706 5.405935 AAAATCAACCTAATCCAAGTGCC 57.594 39.130 0.00 0.00 0.00 5.01
709 734 1.388547 GGTGTGCACACTCCAAAAGA 58.611 50.000 40.20 6.00 45.73 2.52
710 735 0.385390 GGGTGTGCACACTCCAAAAG 59.615 55.000 40.20 0.00 44.45 2.27
711 736 2.499214 GGGTGTGCACACTCCAAAA 58.501 52.632 40.20 7.56 44.45 2.44
712 737 4.251246 GGGTGTGCACACTCCAAA 57.749 55.556 40.20 8.35 44.45 3.28
737 762 0.698238 TAGTGGCAGACCCAGCAATT 59.302 50.000 0.00 0.00 46.54 2.32
749 774 3.562343 TGTTTACACCTGTTAGTGGCA 57.438 42.857 0.00 0.00 42.28 4.92
754 779 7.956420 TCATACTGTTGTTTACACCTGTTAG 57.044 36.000 0.00 0.00 32.10 2.34
755 780 8.734218 TTTCATACTGTTGTTTACACCTGTTA 57.266 30.769 0.00 0.00 32.10 2.41
756 781 7.633193 TTTCATACTGTTGTTTACACCTGTT 57.367 32.000 0.00 0.00 32.10 3.16
757 782 7.500892 TGATTTCATACTGTTGTTTACACCTGT 59.499 33.333 0.00 0.00 32.10 4.00
758 783 7.870826 TGATTTCATACTGTTGTTTACACCTG 58.129 34.615 0.00 0.00 32.10 4.00
759 784 8.514594 CATGATTTCATACTGTTGTTTACACCT 58.485 33.333 0.00 0.00 34.26 4.00
760 785 8.296713 ACATGATTTCATACTGTTGTTTACACC 58.703 33.333 0.00 0.00 34.26 4.16
765 790 8.397906 CGGATACATGATTTCATACTGTTGTTT 58.602 33.333 0.00 0.00 34.26 2.83
766 791 7.012327 CCGGATACATGATTTCATACTGTTGTT 59.988 37.037 0.00 0.00 34.26 2.83
767 792 6.483307 CCGGATACATGATTTCATACTGTTGT 59.517 38.462 0.00 0.00 34.26 3.32
768 793 6.483307 ACCGGATACATGATTTCATACTGTTG 59.517 38.462 9.46 0.00 34.26 3.33
769 794 6.591935 ACCGGATACATGATTTCATACTGTT 58.408 36.000 9.46 0.00 34.26 3.16
770 795 6.174720 ACCGGATACATGATTTCATACTGT 57.825 37.500 9.46 0.00 34.26 3.55
771 796 7.355017 CAAACCGGATACATGATTTCATACTG 58.645 38.462 9.46 0.00 34.26 2.74
772 797 6.017109 GCAAACCGGATACATGATTTCATACT 60.017 38.462 9.46 0.00 34.26 2.12
773 798 6.142817 GCAAACCGGATACATGATTTCATAC 58.857 40.000 9.46 0.00 34.26 2.39
774 799 5.049749 CGCAAACCGGATACATGATTTCATA 60.050 40.000 9.46 0.00 34.26 2.15
778 803 3.691049 CGCAAACCGGATACATGATTT 57.309 42.857 9.46 0.00 0.00 2.17
790 815 1.514657 CACATGATGCCGCAAACCG 60.515 57.895 0.00 0.00 0.00 4.44
794 819 0.888285 TGTGTCACATGATGCCGCAA 60.888 50.000 0.18 0.00 0.00 4.85
804 829 5.717078 AGAAAGCATGATTTGTGTCACAT 57.283 34.783 14.71 0.00 0.00 3.21
806 831 6.000891 TGTAGAAAGCATGATTTGTGTCAC 57.999 37.500 14.71 5.88 0.00 3.67
807 832 6.822667 ATGTAGAAAGCATGATTTGTGTCA 57.177 33.333 14.71 13.40 0.00 3.58
808 833 9.229784 CATAATGTAGAAAGCATGATTTGTGTC 57.770 33.333 14.71 8.39 0.00 3.67
810 835 8.407832 TCCATAATGTAGAAAGCATGATTTGTG 58.592 33.333 14.71 0.00 0.00 3.33
811 836 8.523915 TCCATAATGTAGAAAGCATGATTTGT 57.476 30.769 14.71 12.73 0.00 2.83
812 837 9.806203 TTTCCATAATGTAGAAAGCATGATTTG 57.194 29.630 14.71 0.00 0.00 2.32
814 839 9.807649 GTTTTCCATAATGTAGAAAGCATGATT 57.192 29.630 0.00 0.00 32.81 2.57
815 840 8.416329 GGTTTTCCATAATGTAGAAAGCATGAT 58.584 33.333 0.00 0.00 40.31 2.45
816 841 7.615365 AGGTTTTCCATAATGTAGAAAGCATGA 59.385 33.333 0.00 0.00 43.73 3.07
817 842 7.703621 CAGGTTTTCCATAATGTAGAAAGCATG 59.296 37.037 0.00 0.00 43.73 4.06
818 843 7.147846 CCAGGTTTTCCATAATGTAGAAAGCAT 60.148 37.037 0.00 0.00 43.73 3.79
819 844 6.152661 CCAGGTTTTCCATAATGTAGAAAGCA 59.847 38.462 0.00 0.00 43.73 3.91
820 845 6.377146 TCCAGGTTTTCCATAATGTAGAAAGC 59.623 38.462 0.00 0.00 43.73 3.51
821 846 7.938140 TCCAGGTTTTCCATAATGTAGAAAG 57.062 36.000 0.00 0.00 43.73 2.62
836 864 6.152638 TCAGGATTCCTTTATCCAGGTTTT 57.847 37.500 1.28 0.00 45.45 2.43
922 952 3.821033 GAGCTGGTAAAACAACCACAGAT 59.179 43.478 0.00 0.00 44.68 2.90
930 960 4.380531 CTCAGTCAGAGCTGGTAAAACAA 58.619 43.478 0.00 0.00 37.59 2.83
948 978 0.959372 CCTCCTTGCTTGCCACTCAG 60.959 60.000 0.00 0.00 0.00 3.35
949 979 1.073722 CCTCCTTGCTTGCCACTCA 59.926 57.895 0.00 0.00 0.00 3.41
961 991 3.710722 CACGCTCCTGCCCTCCTT 61.711 66.667 0.00 0.00 35.36 3.36
970 1000 0.467384 CCAATCTGATCCACGCTCCT 59.533 55.000 0.00 0.00 0.00 3.69
992 1022 9.780413 GAAGAAATTTACCAGTCATGATTTCTC 57.220 33.333 14.03 7.17 40.79 2.87
1011 1041 9.646522 ATTATAGCAACAATACCAGGAAGAAAT 57.353 29.630 0.00 0.00 0.00 2.17
1017 1047 7.801104 TGAAGATTATAGCAACAATACCAGGA 58.199 34.615 0.00 0.00 0.00 3.86
1026 1056 6.257849 CGCCTTTACTGAAGATTATAGCAACA 59.742 38.462 0.00 0.00 37.57 3.33
1033 1065 3.118038 TGCCCGCCTTTACTGAAGATTAT 60.118 43.478 0.00 0.00 37.57 1.28
1044 1076 1.077787 CAGGACATGCCCGCCTTTA 60.078 57.895 0.00 0.00 37.37 1.85
1049 1081 4.722700 ACCACAGGACATGCCCGC 62.723 66.667 0.00 0.00 37.37 6.13
1055 1087 3.758554 GCTGTAAATTCACCACAGGACAT 59.241 43.478 3.41 0.00 40.03 3.06
1117 1149 2.611722 GCGAGACTTCTGCTCTTCCTTT 60.612 50.000 0.00 0.00 0.00 3.11
1271 1303 6.658188 TTCCACCCGTCAAAATTAAAATCT 57.342 33.333 0.00 0.00 0.00 2.40
1330 1362 0.110486 GGTTCCATGGACACCACTGT 59.890 55.000 27.65 0.00 35.80 3.55
1423 1455 2.225117 ACTCCTGGAATTTGGACTTGGG 60.225 50.000 0.00 0.00 0.00 4.12
1473 1505 1.743321 GATCCTCCTCTCTGCCCACG 61.743 65.000 0.00 0.00 0.00 4.94
1533 1565 1.203063 GGACCTCCCAGCTTTCCTTTT 60.203 52.381 0.00 0.00 34.14 2.27
1672 1704 2.621998 CCTCCATGGCATCATCTTTCAC 59.378 50.000 6.96 0.00 0.00 3.18
1677 1709 1.065647 CCTCCTCCATGGCATCATCT 58.934 55.000 6.96 0.00 35.26 2.90
1686 1718 2.593978 CCACTGCCCTCCTCCATG 59.406 66.667 0.00 0.00 0.00 3.66
1743 1775 9.421399 TCCTTCACTTTCTTATTTTTCCTCTTT 57.579 29.630 0.00 0.00 0.00 2.52
1788 1820 0.991355 TTTCCACACCTCCACCACCT 60.991 55.000 0.00 0.00 0.00 4.00
1836 1868 2.364970 AGGCTCTTCATCCTCAGATTCG 59.635 50.000 0.00 0.00 0.00 3.34
1856 1888 2.560981 GGGGGTGTTTCAACCACATTAG 59.439 50.000 6.17 0.00 45.48 1.73
1862 1894 2.196229 CCGGGGGTGTTTCAACCA 59.804 61.111 6.17 0.00 44.30 3.67
1872 1904 4.280019 GCCTTTGACACCGGGGGT 62.280 66.667 9.50 0.00 35.62 4.95
1947 1979 0.607217 TCACTCTCCGGCGTAACAGA 60.607 55.000 6.01 0.42 0.00 3.41
1998 2030 7.487484 TCAGAAATGTGTTGCATAAAACTGAA 58.513 30.769 0.00 0.00 36.67 3.02
1999 2031 7.036996 TCAGAAATGTGTTGCATAAAACTGA 57.963 32.000 0.00 0.00 36.67 3.41
2000 2032 7.878477 ATCAGAAATGTGTTGCATAAAACTG 57.122 32.000 0.00 0.00 36.67 3.16
2001 2033 8.891671 AAATCAGAAATGTGTTGCATAAAACT 57.108 26.923 0.00 0.00 36.67 2.66
2002 2034 8.223100 GGAAATCAGAAATGTGTTGCATAAAAC 58.777 33.333 0.00 0.00 36.67 2.43
2037 2069 9.533253 GAATATGGTTCCAAACAAAATGGATAG 57.467 33.333 0.00 0.00 45.99 2.08
2047 2080 5.825532 TCCATGAGAATATGGTTCCAAACA 58.174 37.500 0.00 0.00 46.23 2.83
2163 2196 7.372060 AAGGGGGAAGATATAGGACTATACA 57.628 40.000 1.38 0.00 31.52 2.29
2189 2222 9.204570 GCTTCGCAATATAGTATTAGAAGGAAA 57.795 33.333 18.24 0.00 35.66 3.13
2190 2223 8.585881 AGCTTCGCAATATAGTATTAGAAGGAA 58.414 33.333 18.24 5.46 35.66 3.36
2198 2231 8.662781 TGAAAGAAGCTTCGCAATATAGTATT 57.337 30.769 20.43 2.27 0.00 1.89
2286 2319 1.366366 CCTCGTGGAACCGACTGTT 59.634 57.895 0.00 0.00 40.81 3.16
2365 2398 4.689345 CGGAAGATCCTTAACTGTTCGTTT 59.311 41.667 0.00 0.00 33.99 3.60
2368 2401 3.846360 ACGGAAGATCCTTAACTGTTCG 58.154 45.455 0.00 0.00 33.30 3.95
2415 2448 2.189594 AAGCTGTGAGCATGCTAACA 57.810 45.000 31.64 31.64 45.56 2.41
2421 2454 4.022935 TGGAACTTTTAAGCTGTGAGCATG 60.023 41.667 0.00 0.00 45.56 4.06
2425 2458 9.132521 CAAATATTGGAACTTTTAAGCTGTGAG 57.867 33.333 0.00 0.00 0.00 3.51
2528 2561 6.326323 TCCAGTTTATCATCTGCCTACACATA 59.674 38.462 0.00 0.00 0.00 2.29
2557 2590 7.922811 CCAAATGAAAGCTTTAGGATACCAATC 59.077 37.037 12.68 0.00 37.17 2.67
2929 3333 6.349033 CCAAGGGACGAAAAACTAACATAAGG 60.349 42.308 0.00 0.00 0.00 2.69
2935 3339 3.878699 TCACCAAGGGACGAAAAACTAAC 59.121 43.478 0.00 0.00 0.00 2.34
2947 3351 1.279496 CTCATCCTGTCACCAAGGGA 58.721 55.000 0.00 0.00 0.00 4.20
2967 3371 4.935205 TGATAACCCATCGTCTTTTGAGTG 59.065 41.667 0.00 0.00 36.33 3.51
3772 4182 1.654317 CTGCAGGCAAGCAAAAACAA 58.346 45.000 5.57 0.00 45.13 2.83
4028 4438 5.862323 GTCAAAAGCGTCTACATAGTCTTCA 59.138 40.000 0.00 0.00 0.00 3.02
4163 4573 1.756538 TCTCGATCCTGCACAGCAATA 59.243 47.619 0.00 0.00 38.41 1.90
4164 4574 0.538584 TCTCGATCCTGCACAGCAAT 59.461 50.000 0.00 0.00 38.41 3.56
4575 4992 0.605319 TGCAAGGTTCATGGACCGAC 60.605 55.000 17.87 11.38 44.62 4.79
4620 5037 1.257743 TGCTAGCGACAAGGAGAAGT 58.742 50.000 10.77 0.00 0.00 3.01
4636 5053 2.418368 TGACAACCTTCAGTGTTGCT 57.582 45.000 3.23 0.00 45.42 3.91
4771 5188 4.689549 TCGAGCTCCGGGTTCCCA 62.690 66.667 8.47 0.00 39.14 4.37
4840 5257 1.674057 CAACTCCTTCCCTGCGTCT 59.326 57.895 0.00 0.00 0.00 4.18
4939 5367 1.667756 GCGTGTCATGTAACCGAGACA 60.668 52.381 0.00 0.00 38.56 3.41
4951 5379 3.362399 CTGAGAGCCCGCGTGTCAT 62.362 63.158 4.92 0.00 0.00 3.06
5086 5518 6.588204 TGCATCCCGAAAGTTTGTATAGTAT 58.412 36.000 0.00 0.00 0.00 2.12
5102 5534 1.817099 GCCAAGAGACTGCATCCCG 60.817 63.158 0.00 0.00 0.00 5.14
5104 5536 1.028868 GTGGCCAAGAGACTGCATCC 61.029 60.000 7.24 0.00 0.00 3.51
5170 5608 7.822334 TGTTATGGTGTCATTAGTTAACCTCAG 59.178 37.037 0.88 0.00 34.96 3.35
5219 5659 6.007076 TCACCATTTGCAAGTTAATCCTACA 58.993 36.000 0.00 0.00 0.00 2.74
5290 5731 2.726760 GCAACGACACTTCTCTGTAGTG 59.273 50.000 0.00 0.00 46.56 2.74
5296 5739 3.179443 TGAAAGCAACGACACTTCTCT 57.821 42.857 0.00 0.00 0.00 3.10
5441 5887 6.542005 TGTGAAATTCAAACAGAAGCAGACTA 59.458 34.615 0.00 0.00 40.15 2.59
5448 5894 9.472361 AAGATTCATGTGAAATTCAAACAGAAG 57.528 29.630 0.00 0.00 36.35 2.85
5481 5935 5.104402 CCCCCTTTATTTCTTTTCCATGCAT 60.104 40.000 0.00 0.00 0.00 3.96
5488 5944 3.260632 TGCTGCCCCCTTTATTTCTTTTC 59.739 43.478 0.00 0.00 0.00 2.29
5489 5945 3.007940 GTGCTGCCCCCTTTATTTCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
5490 5946 2.567169 GTGCTGCCCCCTTTATTTCTTT 59.433 45.455 0.00 0.00 0.00 2.52
5491 5947 2.179427 GTGCTGCCCCCTTTATTTCTT 58.821 47.619 0.00 0.00 0.00 2.52
5704 6167 5.827797 TGAAGCTTGTTCTATCTGGTTTGTT 59.172 36.000 2.10 0.00 0.00 2.83
5711 6174 6.104665 TCACTGATGAAGCTTGTTCTATCTG 58.895 40.000 2.10 6.63 0.00 2.90
5738 6208 6.179040 AGGAGAATTCTTCCTGACTTCAATG 58.821 40.000 19.56 0.00 36.97 2.82
5749 6219 4.502962 CTGTCTGACAGGAGAATTCTTCC 58.497 47.826 26.36 11.93 42.35 3.46
5764 6234 0.115152 TCTTCCTCCTGGCTGTCTGA 59.885 55.000 0.00 0.00 0.00 3.27
5821 6291 2.284331 TACCTGCTCTTCGGCCCA 60.284 61.111 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.