Multiple sequence alignment - TraesCS1A01G109200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G109200 chr1A 100.000 3945 0 0 1 3945 108688335 108692279 0.000000e+00 7286.0
1 TraesCS1A01G109200 chr1A 84.696 575 68 9 3328 3882 306638561 306639135 1.240000e-154 556.0
2 TraesCS1A01G109200 chr1A 100.000 110 0 0 182 291 108688624 108688733 1.860000e-48 204.0
3 TraesCS1A01G109200 chr1A 96.429 56 2 0 816 871 179535210 179535265 4.200000e-15 93.5
4 TraesCS1A01G109200 chr1D 94.699 2471 103 19 862 3309 77362136 77364601 0.000000e+00 3812.0
5 TraesCS1A01G109200 chr1D 85.565 575 63 9 3328 3882 62126488 62127062 5.680000e-163 584.0
6 TraesCS1A01G109200 chr1D 99.621 264 1 0 556 819 223524575 223524312 2.130000e-132 483.0
7 TraesCS1A01G109200 chr1B 93.701 1524 62 21 862 2366 120880467 120881975 0.000000e+00 2252.0
8 TraesCS1A01G109200 chr1B 89.912 912 60 20 2399 3304 120882521 120883406 0.000000e+00 1146.0
9 TraesCS1A01G109200 chr1B 92.617 298 14 1 1 290 674380155 674380452 4.710000e-114 422.0
10 TraesCS1A01G109200 chr1B 91.379 58 5 0 3888 3945 120883390 120883447 3.270000e-11 80.5
11 TraesCS1A01G109200 chr2A 86.458 576 56 9 3328 3882 214288880 214289454 2.610000e-171 612.0
12 TraesCS1A01G109200 chr2A 97.509 281 6 1 540 819 552491894 552491614 2.760000e-131 479.0
13 TraesCS1A01G109200 chr2A 97.500 280 6 1 541 819 421219298 421219019 9.920000e-131 477.0
14 TraesCS1A01G109200 chr6D 85.913 575 61 7 3328 3882 242979405 242979979 2.620000e-166 595.0
15 TraesCS1A01G109200 chr5D 85.739 575 62 7 3328 3882 277243686 277243112 1.220000e-164 590.0
16 TraesCS1A01G109200 chr5D 85.565 575 63 8 3328 3882 469490787 469490213 5.680000e-163 584.0
17 TraesCS1A01G109200 chr3D 85.590 576 63 7 3328 3883 228186090 228186665 1.580000e-163 586.0
18 TraesCS1A01G109200 chr3D 85.391 575 64 9 3328 3882 124510598 124510024 2.640000e-161 579.0
19 TraesCS1A01G109200 chr3D 92.784 291 20 1 1 291 415132254 415131965 1.700000e-113 420.0
20 TraesCS1A01G109200 chr3D 94.615 260 14 0 290 549 415132074 415131815 1.710000e-108 403.0
21 TraesCS1A01G109200 chr6B 85.417 576 63 8 3328 3883 559347232 559347806 2.640000e-161 579.0
22 TraesCS1A01G109200 chr6A 85.868 559 59 6 3344 3882 581532708 581533266 9.510000e-161 577.0
23 TraesCS1A01G109200 chr6A 98.201 278 3 1 541 816 410901494 410901771 5.930000e-133 484.0
24 TraesCS1A01G109200 chr3A 85.366 574 64 8 3328 3882 329507893 329507321 9.510000e-161 577.0
25 TraesCS1A01G109200 chr3A 85.064 549 74 3 3342 3882 271959218 271958670 1.600000e-153 553.0
26 TraesCS1A01G109200 chr3A 98.182 275 5 0 545 819 77487674 77487400 7.670000e-132 481.0
27 TraesCS1A01G109200 chr3A 95.516 223 10 0 1 223 13083944 13084166 1.350000e-94 357.0
28 TraesCS1A01G109200 chr3A 92.308 221 11 2 330 549 13084327 13084542 3.830000e-80 309.0
29 TraesCS1A01G109200 chr5A 85.217 575 65 9 3328 3882 11949916 11950490 1.230000e-159 573.0
30 TraesCS1A01G109200 chr5A 93.487 261 16 1 290 549 556735716 556735456 1.720000e-103 387.0
31 TraesCS1A01G109200 chr5A 90.722 291 17 1 1 291 556735887 556735607 2.880000e-101 379.0
32 TraesCS1A01G109200 chr5A 92.748 262 15 3 290 548 557092304 557092564 3.720000e-100 375.0
33 TraesCS1A01G109200 chr2B 85.069 576 66 7 3327 3882 259014552 259013977 1.590000e-158 569.0
34 TraesCS1A01G109200 chr2B 87.059 170 16 5 128 291 309088090 309087921 1.870000e-43 187.0
35 TraesCS1A01G109200 chr3B 84.522 575 69 9 3328 3882 556452909 556453483 5.760000e-153 551.0
36 TraesCS1A01G109200 chr3B 94.521 292 14 2 1 291 703334006 703334296 2.160000e-122 449.0
37 TraesCS1A01G109200 chr3B 95.769 260 10 1 290 549 703334187 703334445 6.100000e-113 418.0
38 TraesCS1A01G109200 chr3B 85.801 331 44 3 3328 3656 406542565 406542894 8.110000e-92 348.0
39 TraesCS1A01G109200 chr3B 94.161 137 6 2 414 549 453508777 453508642 1.440000e-49 207.0
40 TraesCS1A01G109200 chr3B 96.078 51 2 0 816 866 335835769 335835819 2.530000e-12 84.2
41 TraesCS1A01G109200 chr4A 84.348 575 70 5 3328 3882 499220558 499221132 2.680000e-151 545.0
42 TraesCS1A01G109200 chr4A 100.000 264 0 0 556 819 438239439 438239702 4.580000e-134 488.0
43 TraesCS1A01G109200 chr4A 95.918 49 2 0 816 864 467261902 467261854 3.270000e-11 80.5
44 TraesCS1A01G109200 chr4A 94.340 53 2 1 816 867 658237084 658237136 3.270000e-11 80.5
45 TraesCS1A01G109200 chr4D 99.621 264 1 0 556 819 313597748 313597485 2.130000e-132 483.0
46 TraesCS1A01G109200 chr4D 91.837 49 4 0 816 864 205903671 205903719 7.070000e-08 69.4
47 TraesCS1A01G109200 chr2D 99.251 267 2 0 550 816 442879087 442879353 2.130000e-132 483.0
48 TraesCS1A01G109200 chr2D 92.440 291 19 2 1 291 485088106 485088393 2.840000e-111 412.0
49 TraesCS1A01G109200 chr2D 95.000 260 13 0 290 549 485088284 485088543 3.670000e-110 409.0
50 TraesCS1A01G109200 chr2D 90.419 167 13 1 128 291 63381902 63381736 2.390000e-52 217.0
51 TraesCS1A01G109200 chr7D 98.529 272 4 0 548 819 474079619 474079348 7.670000e-132 481.0
52 TraesCS1A01G109200 chrUn 94.845 291 14 1 1 291 359826802 359827091 1.670000e-123 453.0
53 TraesCS1A01G109200 chrUn 95.769 260 10 1 290 549 359826982 359827240 6.100000e-113 418.0
54 TraesCS1A01G109200 chrUn 94.898 196 9 1 1 196 376512641 376512447 4.950000e-79 305.0
55 TraesCS1A01G109200 chr5B 94.502 291 15 1 1 291 442752802 442753091 7.780000e-122 448.0
56 TraesCS1A01G109200 chr5B 95.331 257 11 1 290 546 442752982 442753237 1.320000e-109 407.0
57 TraesCS1A01G109200 chr7A 92.143 140 11 0 290 429 110549117 110548978 8.650000e-47 198.0
58 TraesCS1A01G109200 chr7B 87.059 170 16 1 128 291 270953489 270953658 1.870000e-43 187.0
59 TraesCS1A01G109200 chr7B 95.918 49 2 0 816 864 745284189 745284237 3.270000e-11 80.5
60 TraesCS1A01G109200 chr7B 97.436 39 1 0 816 854 106804417 106804455 2.540000e-07 67.6
61 TraesCS1A01G109200 chr4B 96.078 51 2 0 816 866 299744349 299744299 2.530000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G109200 chr1A 108688335 108692279 3944 False 3745.0 7286 100.000 1 3945 2 chr1A.!!$F3 3944
1 TraesCS1A01G109200 chr1A 306638561 306639135 574 False 556.0 556 84.696 3328 3882 1 chr1A.!!$F2 554
2 TraesCS1A01G109200 chr1D 77362136 77364601 2465 False 3812.0 3812 94.699 862 3309 1 chr1D.!!$F2 2447
3 TraesCS1A01G109200 chr1D 62126488 62127062 574 False 584.0 584 85.565 3328 3882 1 chr1D.!!$F1 554
4 TraesCS1A01G109200 chr1B 120880467 120883447 2980 False 1159.5 2252 91.664 862 3945 3 chr1B.!!$F2 3083
5 TraesCS1A01G109200 chr2A 214288880 214289454 574 False 612.0 612 86.458 3328 3882 1 chr2A.!!$F1 554
6 TraesCS1A01G109200 chr6D 242979405 242979979 574 False 595.0 595 85.913 3328 3882 1 chr6D.!!$F1 554
7 TraesCS1A01G109200 chr5D 277243112 277243686 574 True 590.0 590 85.739 3328 3882 1 chr5D.!!$R1 554
8 TraesCS1A01G109200 chr5D 469490213 469490787 574 True 584.0 584 85.565 3328 3882 1 chr5D.!!$R2 554
9 TraesCS1A01G109200 chr3D 228186090 228186665 575 False 586.0 586 85.590 3328 3883 1 chr3D.!!$F1 555
10 TraesCS1A01G109200 chr3D 124510024 124510598 574 True 579.0 579 85.391 3328 3882 1 chr3D.!!$R1 554
11 TraesCS1A01G109200 chr6B 559347232 559347806 574 False 579.0 579 85.417 3328 3883 1 chr6B.!!$F1 555
12 TraesCS1A01G109200 chr6A 581532708 581533266 558 False 577.0 577 85.868 3344 3882 1 chr6A.!!$F2 538
13 TraesCS1A01G109200 chr3A 329507321 329507893 572 True 577.0 577 85.366 3328 3882 1 chr3A.!!$R3 554
14 TraesCS1A01G109200 chr3A 271958670 271959218 548 True 553.0 553 85.064 3342 3882 1 chr3A.!!$R2 540
15 TraesCS1A01G109200 chr3A 13083944 13084542 598 False 333.0 357 93.912 1 549 2 chr3A.!!$F1 548
16 TraesCS1A01G109200 chr5A 11949916 11950490 574 False 573.0 573 85.217 3328 3882 1 chr5A.!!$F1 554
17 TraesCS1A01G109200 chr2B 259013977 259014552 575 True 569.0 569 85.069 3327 3882 1 chr2B.!!$R1 555
18 TraesCS1A01G109200 chr3B 556452909 556453483 574 False 551.0 551 84.522 3328 3882 1 chr3B.!!$F3 554
19 TraesCS1A01G109200 chr4A 499220558 499221132 574 False 545.0 545 84.348 3328 3882 1 chr4A.!!$F2 554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 852 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.0 0.0 0.0 37.78 3.09 F
817 873 0.108138 GTCCGCTATGCACTGGAGTT 60.108 55.0 0.0 0.0 0.00 3.01 F
818 874 0.613260 TCCGCTATGCACTGGAGTTT 59.387 50.0 0.0 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2758 3351 1.169661 GCCGGACAATGTTGACCACA 61.170 55.000 5.05 0.0 41.99 4.17 R
2770 3363 2.341101 GGAGAAGTCGAGCCGGACA 61.341 63.158 5.05 0.0 39.42 4.02 R
2967 3565 7.824779 ACAGATTAGAATCAACTTGAACCTACC 59.175 37.037 5.11 0.0 37.89 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.768527 TCCTGGTTCTAGCCAATCTCAG 59.231 50.000 0.00 0.00 38.18 3.35
56 57 5.762218 TCAGCCTATTTACGAGTAGTAGGTC 59.238 44.000 17.37 12.68 36.56 3.85
82 83 4.760047 TCTTCTTCCAGCCGGCGC 62.760 66.667 23.20 0.00 0.00 6.53
121 122 2.125229 CTCTGCAGCGCCATGAGT 60.125 61.111 9.47 0.00 0.00 3.41
124 125 2.435410 TGCAGCGCCATGAGTGAG 60.435 61.111 2.29 0.00 0.00 3.51
172 173 2.818130 TTGAAACCTTCAATGCCAGC 57.182 45.000 0.00 0.00 44.21 4.85
207 208 1.413077 GGTGCATCAGGGGTAGTCTAC 59.587 57.143 0.95 0.95 0.00 2.59
209 210 2.500098 GTGCATCAGGGGTAGTCTACAA 59.500 50.000 12.08 0.00 0.00 2.41
223 224 7.094118 GGGTAGTCTACAAATCCTAGCATCTAG 60.094 44.444 12.08 0.00 31.29 2.43
224 225 6.909550 AGTCTACAAATCCTAGCATCTAGG 57.090 41.667 12.53 12.53 36.06 3.02
225 226 6.377912 AGTCTACAAATCCTAGCATCTAGGT 58.622 40.000 16.86 4.98 36.16 3.08
228 229 3.322254 ACAAATCCTAGCATCTAGGTCCG 59.678 47.826 16.86 8.83 36.16 4.79
229 230 2.223803 ATCCTAGCATCTAGGTCCGG 57.776 55.000 16.86 0.00 36.16 5.14
232 233 1.867919 CTAGCATCTAGGTCCGGCGG 61.868 65.000 22.51 22.51 0.00 6.13
233 234 2.347691 TAGCATCTAGGTCCGGCGGA 62.348 60.000 27.46 27.46 0.00 5.54
234 235 2.574955 GCATCTAGGTCCGGCGGAT 61.575 63.158 33.54 20.02 32.73 4.18
235 236 1.290324 CATCTAGGTCCGGCGGATG 59.710 63.158 33.54 20.95 32.73 3.51
237 238 1.464376 ATCTAGGTCCGGCGGATGTG 61.464 60.000 33.54 21.11 32.73 3.21
238 239 2.363276 TAGGTCCGGCGGATGTGT 60.363 61.111 33.54 18.48 32.73 3.72
239 240 2.629050 CTAGGTCCGGCGGATGTGTG 62.629 65.000 33.54 17.03 32.73 3.82
242 243 4.094646 TCCGGCGGATGTGTGCAT 62.095 61.111 27.46 0.00 38.18 3.96
243 244 3.879682 CCGGCGGATGTGTGCATG 61.880 66.667 24.41 0.00 35.07 4.06
244 245 3.879682 CGGCGGATGTGTGCATGG 61.880 66.667 0.00 0.00 35.07 3.66
245 246 2.438254 GGCGGATGTGTGCATGGA 60.438 61.111 0.00 0.00 35.07 3.41
246 247 2.045708 GGCGGATGTGTGCATGGAA 61.046 57.895 0.00 0.00 35.07 3.53
247 248 1.430632 GCGGATGTGTGCATGGAAG 59.569 57.895 0.00 0.00 35.07 3.46
248 249 1.430632 CGGATGTGTGCATGGAAGC 59.569 57.895 0.00 0.00 35.07 3.86
250 251 0.454600 GGATGTGTGCATGGAAGCTG 59.545 55.000 0.00 0.00 35.07 4.24
252 253 0.896479 ATGTGTGCATGGAAGCTGCA 60.896 50.000 1.02 0.00 46.82 4.41
274 275 4.712425 GCCAGCCGCTGTTTGCAG 62.712 66.667 18.98 3.82 45.23 4.41
285 286 2.785679 CTGTTTGCAGCCGCTAATTAC 58.214 47.619 0.00 0.00 39.64 1.89
286 287 2.420022 CTGTTTGCAGCCGCTAATTACT 59.580 45.455 0.00 0.00 39.64 2.24
287 288 2.418628 TGTTTGCAGCCGCTAATTACTC 59.581 45.455 0.00 0.00 39.64 2.59
289 290 2.225068 TGCAGCCGCTAATTACTCTC 57.775 50.000 0.00 0.00 39.64 3.20
291 292 2.103094 TGCAGCCGCTAATTACTCTCAT 59.897 45.455 0.00 0.00 39.64 2.90
292 293 2.478134 GCAGCCGCTAATTACTCTCATG 59.522 50.000 0.00 0.00 34.30 3.07
293 294 3.722147 CAGCCGCTAATTACTCTCATGT 58.278 45.455 0.00 0.00 0.00 3.21
295 296 4.920340 CAGCCGCTAATTACTCTCATGTAG 59.080 45.833 0.00 0.00 0.00 2.74
296 297 4.021894 AGCCGCTAATTACTCTCATGTAGG 60.022 45.833 0.00 0.00 0.00 3.18
297 298 4.262079 GCCGCTAATTACTCTCATGTAGGT 60.262 45.833 0.00 0.00 0.00 3.08
298 299 5.223382 CCGCTAATTACTCTCATGTAGGTG 58.777 45.833 0.00 0.00 0.00 4.00
299 300 4.681942 CGCTAATTACTCTCATGTAGGTGC 59.318 45.833 0.00 0.00 0.00 5.01
300 301 5.601662 GCTAATTACTCTCATGTAGGTGCA 58.398 41.667 0.00 0.00 0.00 4.57
301 302 6.226787 GCTAATTACTCTCATGTAGGTGCAT 58.773 40.000 0.00 0.00 0.00 3.96
303 304 5.876651 ATTACTCTCATGTAGGTGCATCA 57.123 39.130 0.00 0.00 0.00 3.07
304 305 3.815856 ACTCTCATGTAGGTGCATCAG 57.184 47.619 0.00 0.00 0.00 2.90
305 306 2.433604 ACTCTCATGTAGGTGCATCAGG 59.566 50.000 0.00 0.00 0.00 3.86
306 307 1.764723 TCTCATGTAGGTGCATCAGGG 59.235 52.381 0.00 0.00 0.00 4.45
307 308 0.839277 TCATGTAGGTGCATCAGGGG 59.161 55.000 0.00 0.00 0.00 4.79
308 309 0.548031 CATGTAGGTGCATCAGGGGT 59.452 55.000 0.00 0.00 0.00 4.95
310 311 1.496060 TGTAGGTGCATCAGGGGTAG 58.504 55.000 0.00 0.00 0.00 3.18
311 312 1.273609 TGTAGGTGCATCAGGGGTAGT 60.274 52.381 0.00 0.00 0.00 2.73
312 313 1.413077 GTAGGTGCATCAGGGGTAGTC 59.587 57.143 0.00 0.00 0.00 2.59
313 314 0.043334 AGGTGCATCAGGGGTAGTCT 59.957 55.000 0.00 0.00 0.00 3.24
314 315 1.291033 AGGTGCATCAGGGGTAGTCTA 59.709 52.381 0.00 0.00 0.00 2.59
316 317 2.108168 GTGCATCAGGGGTAGTCTACA 58.892 52.381 12.08 0.00 0.00 2.74
318 319 3.055385 GTGCATCAGGGGTAGTCTACAAA 60.055 47.826 12.08 0.00 0.00 2.83
319 320 3.780294 TGCATCAGGGGTAGTCTACAAAT 59.220 43.478 12.08 0.00 0.00 2.32
320 321 4.141711 TGCATCAGGGGTAGTCTACAAATC 60.142 45.833 12.08 0.00 0.00 2.17
321 322 4.743955 GCATCAGGGGTAGTCTACAAATCC 60.744 50.000 12.08 7.39 0.00 3.01
322 323 4.348020 TCAGGGGTAGTCTACAAATCCT 57.652 45.455 12.08 9.29 0.00 3.24
324 325 5.455872 TCAGGGGTAGTCTACAAATCCTAG 58.544 45.833 12.08 7.67 0.00 3.02
326 327 3.965347 GGGGTAGTCTACAAATCCTAGCA 59.035 47.826 12.08 0.00 31.29 3.49
327 328 4.593634 GGGGTAGTCTACAAATCCTAGCAT 59.406 45.833 12.08 0.00 31.29 3.79
353 408 2.438254 GGCGGATGTGTGCATGGA 60.438 61.111 0.00 0.00 35.07 3.41
404 459 3.552294 GCCGCTAATTACTCTCAGTCAAC 59.448 47.826 0.00 0.00 0.00 3.18
415 470 3.937706 CTCTCAGTCAACCAATCATCCAC 59.062 47.826 0.00 0.00 0.00 4.02
425 480 5.751243 ACCAATCATCCACGCTAAAATAC 57.249 39.130 0.00 0.00 0.00 1.89
449 504 6.871492 ACTTGGTCAAAACTTTGGTAAAACAG 59.129 34.615 2.49 0.00 38.66 3.16
476 531 5.748152 CCAACCAAACACATGTAAAACTGAG 59.252 40.000 0.00 0.00 0.00 3.35
519 575 3.214328 CTGTAGTATTCAATGCCCACCC 58.786 50.000 0.00 0.00 0.00 4.61
522 578 1.063717 AGTATTCAATGCCCACCCAGG 60.064 52.381 0.00 0.00 37.03 4.45
531 587 0.181350 GCCCACCCAGGAGAATACTG 59.819 60.000 0.00 0.00 41.22 2.74
553 609 3.643237 TGGTTTTCAATTACCACCACCA 58.357 40.909 0.00 0.00 39.44 4.17
554 610 3.385111 TGGTTTTCAATTACCACCACCAC 59.615 43.478 0.00 0.00 39.44 4.16
555 611 3.243941 GGTTTTCAATTACCACCACCACC 60.244 47.826 0.00 0.00 34.48 4.61
556 612 3.314307 TTTCAATTACCACCACCACCA 57.686 42.857 0.00 0.00 0.00 4.17
557 613 3.314307 TTCAATTACCACCACCACCAA 57.686 42.857 0.00 0.00 0.00 3.67
558 614 2.588620 TCAATTACCACCACCACCAAC 58.411 47.619 0.00 0.00 0.00 3.77
559 615 2.091830 TCAATTACCACCACCACCAACA 60.092 45.455 0.00 0.00 0.00 3.33
560 616 2.695666 CAATTACCACCACCACCAACAA 59.304 45.455 0.00 0.00 0.00 2.83
561 617 1.765230 TTACCACCACCACCAACAAC 58.235 50.000 0.00 0.00 0.00 3.32
562 618 0.624254 TACCACCACCACCAACAACA 59.376 50.000 0.00 0.00 0.00 3.33
563 619 0.251832 ACCACCACCACCAACAACAA 60.252 50.000 0.00 0.00 0.00 2.83
564 620 0.174617 CCACCACCACCAACAACAAC 59.825 55.000 0.00 0.00 0.00 3.32
565 621 0.891373 CACCACCACCAACAACAACA 59.109 50.000 0.00 0.00 0.00 3.33
566 622 1.273606 CACCACCACCAACAACAACAA 59.726 47.619 0.00 0.00 0.00 2.83
567 623 1.273886 ACCACCACCAACAACAACAAC 59.726 47.619 0.00 0.00 0.00 3.32
568 624 1.273606 CCACCACCAACAACAACAACA 59.726 47.619 0.00 0.00 0.00 3.33
569 625 2.289072 CCACCACCAACAACAACAACAA 60.289 45.455 0.00 0.00 0.00 2.83
570 626 2.734079 CACCACCAACAACAACAACAAC 59.266 45.455 0.00 0.00 0.00 3.32
571 627 2.365617 ACCACCAACAACAACAACAACA 59.634 40.909 0.00 0.00 0.00 3.33
572 628 3.181465 ACCACCAACAACAACAACAACAA 60.181 39.130 0.00 0.00 0.00 2.83
573 629 3.185391 CCACCAACAACAACAACAACAAC 59.815 43.478 0.00 0.00 0.00 3.32
574 630 3.804325 CACCAACAACAACAACAACAACA 59.196 39.130 0.00 0.00 0.00 3.33
575 631 4.271049 CACCAACAACAACAACAACAACAA 59.729 37.500 0.00 0.00 0.00 2.83
576 632 4.876107 ACCAACAACAACAACAACAACAAA 59.124 33.333 0.00 0.00 0.00 2.83
577 633 5.007136 ACCAACAACAACAACAACAACAAAG 59.993 36.000 0.00 0.00 0.00 2.77
578 634 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
579 635 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
580 636 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
581 637 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
582 638 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
583 639 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
584 640 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
585 641 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
586 642 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
587 643 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
588 644 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
589 645 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
590 646 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
591 647 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
592 648 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
593 649 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
594 650 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
595 651 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
596 652 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
597 653 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
598 654 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
607 663 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
608 664 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
609 665 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
610 666 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
611 667 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
612 668 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
613 669 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
614 670 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
615 671 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
616 672 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
617 673 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
618 674 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
633 689 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
634 690 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
635 691 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
636 692 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
637 693 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
638 694 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
639 695 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
640 696 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
641 697 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
642 698 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
643 699 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
644 700 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
652 708 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
653 709 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
654 710 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
655 711 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
656 712 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
657 713 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
658 714 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
659 715 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
660 716 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
661 717 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
662 718 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
663 719 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
664 720 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
665 721 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
666 722 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
667 723 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
668 724 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
669 725 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
670 726 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
671 727 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
672 728 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
673 729 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
674 730 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
675 731 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
676 732 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
677 733 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
678 734 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
679 735 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
680 736 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
681 737 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
682 738 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
683 739 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
684 740 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
685 741 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
687 743 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
688 744 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
689 745 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
690 746 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
691 747 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
692 748 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
693 749 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
694 750 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
695 751 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
696 752 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
697 753 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
698 754 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
699 755 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
700 756 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
701 757 3.494048 CCTGTCCATAGCTAGCTCTTTGG 60.494 52.174 23.26 24.37 36.78 3.28
702 758 3.107601 TGTCCATAGCTAGCTCTTTGGT 58.892 45.455 27.50 8.05 36.79 3.67
703 759 3.118629 TGTCCATAGCTAGCTCTTTGGTG 60.119 47.826 27.50 16.61 36.79 4.17
704 760 3.133003 GTCCATAGCTAGCTCTTTGGTGA 59.867 47.826 27.50 15.24 36.79 4.02
705 761 3.969976 TCCATAGCTAGCTCTTTGGTGAT 59.030 43.478 27.50 12.14 36.79 3.06
706 762 5.011125 GTCCATAGCTAGCTCTTTGGTGATA 59.989 44.000 27.50 14.48 36.79 2.15
707 763 5.011125 TCCATAGCTAGCTCTTTGGTGATAC 59.989 44.000 27.50 0.00 36.79 2.24
708 764 5.011533 CCATAGCTAGCTCTTTGGTGATACT 59.988 44.000 23.26 0.00 32.65 2.12
709 765 4.664150 AGCTAGCTCTTTGGTGATACTC 57.336 45.455 12.68 0.00 0.00 2.59
710 766 3.386402 AGCTAGCTCTTTGGTGATACTCC 59.614 47.826 12.68 0.00 0.00 3.85
711 767 3.133003 GCTAGCTCTTTGGTGATACTCCA 59.867 47.826 7.70 0.00 0.00 3.86
712 768 4.383118 GCTAGCTCTTTGGTGATACTCCAA 60.383 45.833 7.70 0.00 42.29 3.53
713 769 4.851639 AGCTCTTTGGTGATACTCCAAT 57.148 40.909 6.20 0.00 43.25 3.16
714 770 4.775236 AGCTCTTTGGTGATACTCCAATC 58.225 43.478 6.20 0.00 43.25 2.67
715 771 3.879892 GCTCTTTGGTGATACTCCAATCC 59.120 47.826 6.20 0.00 43.25 3.01
716 772 4.384647 GCTCTTTGGTGATACTCCAATCCT 60.385 45.833 6.20 0.00 43.25 3.24
717 773 5.749462 CTCTTTGGTGATACTCCAATCCTT 58.251 41.667 6.20 0.00 43.25 3.36
718 774 5.745227 TCTTTGGTGATACTCCAATCCTTC 58.255 41.667 6.20 0.00 43.25 3.46
719 775 5.250543 TCTTTGGTGATACTCCAATCCTTCA 59.749 40.000 6.20 0.00 43.25 3.02
720 776 4.760530 TGGTGATACTCCAATCCTTCAG 57.239 45.455 0.00 0.00 31.50 3.02
721 777 3.455910 TGGTGATACTCCAATCCTTCAGG 59.544 47.826 0.00 0.00 31.50 3.86
722 778 3.456277 GGTGATACTCCAATCCTTCAGGT 59.544 47.826 0.00 0.00 36.34 4.00
723 779 4.443598 GGTGATACTCCAATCCTTCAGGTC 60.444 50.000 0.00 0.00 36.34 3.85
724 780 4.407296 GTGATACTCCAATCCTTCAGGTCT 59.593 45.833 0.00 0.00 36.34 3.85
725 781 4.651503 TGATACTCCAATCCTTCAGGTCTC 59.348 45.833 0.00 0.00 36.34 3.36
726 782 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
727 783 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
728 784 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
729 785 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
730 786 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
731 787 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
732 788 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
733 789 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
734 790 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
735 791 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
736 792 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
737 793 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
738 794 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
739 795 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
740 796 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
741 797 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
742 798 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
743 799 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
744 800 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
745 801 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
746 802 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
747 803 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
748 804 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
749 805 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
750 806 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
751 807 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
752 808 1.210478 CGGACTCCTCCCATGTCAAAT 59.790 52.381 0.00 0.00 31.93 2.32
753 809 2.356125 CGGACTCCTCCCATGTCAAATT 60.356 50.000 0.00 0.00 31.93 1.82
754 810 3.282885 GGACTCCTCCCATGTCAAATTC 58.717 50.000 0.00 0.00 32.84 2.17
755 811 2.939103 GACTCCTCCCATGTCAAATTCG 59.061 50.000 0.00 0.00 0.00 3.34
756 812 2.292267 CTCCTCCCATGTCAAATTCGG 58.708 52.381 0.00 0.00 0.00 4.30
757 813 1.633432 TCCTCCCATGTCAAATTCGGT 59.367 47.619 0.00 0.00 0.00 4.69
758 814 2.017049 CCTCCCATGTCAAATTCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
759 815 2.356125 CCTCCCATGTCAAATTCGGTCT 60.356 50.000 0.00 0.00 0.00 3.85
760 816 3.118408 CCTCCCATGTCAAATTCGGTCTA 60.118 47.826 0.00 0.00 0.00 2.59
761 817 3.869065 TCCCATGTCAAATTCGGTCTAC 58.131 45.455 0.00 0.00 0.00 2.59
762 818 2.943033 CCCATGTCAAATTCGGTCTACC 59.057 50.000 0.00 0.00 0.00 3.18
763 819 2.943033 CCATGTCAAATTCGGTCTACCC 59.057 50.000 0.00 0.00 0.00 3.69
764 820 2.773993 TGTCAAATTCGGTCTACCCC 57.226 50.000 0.00 0.00 0.00 4.95
771 827 4.835891 CGGTCTACCCCGCCCTCT 62.836 72.222 0.00 0.00 41.78 3.69
772 828 2.838693 GGTCTACCCCGCCCTCTC 60.839 72.222 0.00 0.00 0.00 3.20
773 829 2.279408 GTCTACCCCGCCCTCTCT 59.721 66.667 0.00 0.00 0.00 3.10
774 830 1.381463 GTCTACCCCGCCCTCTCTT 60.381 63.158 0.00 0.00 0.00 2.85
775 831 1.381327 TCTACCCCGCCCTCTCTTG 60.381 63.158 0.00 0.00 0.00 3.02
776 832 1.381327 CTACCCCGCCCTCTCTTGA 60.381 63.158 0.00 0.00 0.00 3.02
777 833 1.677637 CTACCCCGCCCTCTCTTGAC 61.678 65.000 0.00 0.00 0.00 3.18
778 834 2.449967 TACCCCGCCCTCTCTTGACA 62.450 60.000 0.00 0.00 0.00 3.58
779 835 2.370445 CCCCGCCCTCTCTTGACAT 61.370 63.158 0.00 0.00 0.00 3.06
780 836 1.604378 CCCGCCCTCTCTTGACATT 59.396 57.895 0.00 0.00 0.00 2.71
781 837 0.462759 CCCGCCCTCTCTTGACATTC 60.463 60.000 0.00 0.00 0.00 2.67
782 838 0.539051 CCGCCCTCTCTTGACATTCT 59.461 55.000 0.00 0.00 0.00 2.40
783 839 1.472376 CCGCCCTCTCTTGACATTCTC 60.472 57.143 0.00 0.00 0.00 2.87
784 840 1.472376 CGCCCTCTCTTGACATTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
785 841 1.472376 GCCCTCTCTTGACATTCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
786 842 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
787 843 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
788 844 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
789 845 0.994995 CTCTTGACATTCTCCGCACG 59.005 55.000 0.00 0.00 0.00 5.34
790 846 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
791 847 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
792 848 0.602638 TTGACATTCTCCGCACGCTT 60.603 50.000 0.00 0.00 0.00 4.68
793 849 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
794 850 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
795 851 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
796 852 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
797 853 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
798 854 3.554692 CTCCGCACGCTTTAGCCG 61.555 66.667 0.00 0.00 37.91 5.52
799 855 4.367023 TCCGCACGCTTTAGCCGT 62.367 61.111 0.00 0.00 37.91 5.68
800 856 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
801 857 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
802 858 3.849953 GCACGCTTTAGCCGTCCG 61.850 66.667 0.00 0.00 37.91 4.79
803 859 3.849953 CACGCTTTAGCCGTCCGC 61.850 66.667 0.00 0.00 37.91 5.54
812 868 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
813 869 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
814 870 2.494445 CGTCCGCTATGCACTGGA 59.506 61.111 0.00 0.00 0.00 3.86
815 871 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
816 872 1.517832 GTCCGCTATGCACTGGAGT 59.482 57.895 0.00 0.00 0.00 3.85
817 873 0.108138 GTCCGCTATGCACTGGAGTT 60.108 55.000 0.00 0.00 0.00 3.01
818 874 0.613260 TCCGCTATGCACTGGAGTTT 59.387 50.000 0.00 0.00 0.00 2.66
819 875 1.003118 TCCGCTATGCACTGGAGTTTT 59.997 47.619 0.00 0.00 0.00 2.43
820 876 1.398390 CCGCTATGCACTGGAGTTTTC 59.602 52.381 0.00 0.00 0.00 2.29
821 877 2.076100 CGCTATGCACTGGAGTTTTCA 58.924 47.619 0.00 0.00 0.00 2.69
822 878 2.483877 CGCTATGCACTGGAGTTTTCAA 59.516 45.455 0.00 0.00 0.00 2.69
823 879 3.127548 CGCTATGCACTGGAGTTTTCAAT 59.872 43.478 0.00 0.00 0.00 2.57
824 880 4.379813 CGCTATGCACTGGAGTTTTCAATT 60.380 41.667 0.00 0.00 0.00 2.32
825 881 5.163764 CGCTATGCACTGGAGTTTTCAATTA 60.164 40.000 0.00 0.00 0.00 1.40
826 882 6.030228 GCTATGCACTGGAGTTTTCAATTAC 58.970 40.000 0.00 0.00 0.00 1.89
827 883 4.846779 TGCACTGGAGTTTTCAATTACC 57.153 40.909 0.00 0.00 0.00 2.85
828 884 4.211125 TGCACTGGAGTTTTCAATTACCA 58.789 39.130 0.00 0.00 0.00 3.25
829 885 4.037446 TGCACTGGAGTTTTCAATTACCAC 59.963 41.667 0.00 0.00 0.00 4.16
830 886 4.037446 GCACTGGAGTTTTCAATTACCACA 59.963 41.667 0.00 0.00 0.00 4.17
831 887 5.762045 CACTGGAGTTTTCAATTACCACAG 58.238 41.667 0.00 0.00 0.00 3.66
832 888 5.299279 CACTGGAGTTTTCAATTACCACAGT 59.701 40.000 0.00 0.00 34.26 3.55
833 889 5.891551 ACTGGAGTTTTCAATTACCACAGTT 59.108 36.000 0.00 0.00 31.71 3.16
834 890 6.379988 ACTGGAGTTTTCAATTACCACAGTTT 59.620 34.615 0.00 0.00 31.71 2.66
835 891 7.558444 ACTGGAGTTTTCAATTACCACAGTTTA 59.442 33.333 0.00 0.00 31.71 2.01
836 892 8.294954 TGGAGTTTTCAATTACCACAGTTTAA 57.705 30.769 0.00 0.00 0.00 1.52
837 893 8.750298 TGGAGTTTTCAATTACCACAGTTTAAA 58.250 29.630 0.00 0.00 0.00 1.52
838 894 9.589111 GGAGTTTTCAATTACCACAGTTTAAAA 57.411 29.630 0.00 0.00 0.00 1.52
865 921 2.577606 TGCTGCCAAACTAAGCCTTA 57.422 45.000 0.00 0.00 36.05 2.69
891 947 6.639563 TGTTACTCTGCACAGATTTATAGCA 58.360 36.000 0.00 0.00 36.76 3.49
938 995 3.694072 TCATTTTCTGGTGCCTTATTCCG 59.306 43.478 0.00 0.00 0.00 4.30
1027 1084 4.393155 CTGCTGCAGTACCGGCCA 62.393 66.667 21.21 1.46 36.26 5.36
1113 1173 4.490160 CGAACGGTTGTTGCAAAGAAAAAG 60.490 41.667 0.00 0.00 38.78 2.27
1176 1236 6.325286 GGGTCTCAGATGATAAGGTTTCTAGT 59.675 42.308 0.00 0.00 0.00 2.57
1227 1290 3.834610 AGAGTCAGTTATCGACAAACCG 58.165 45.455 8.46 0.23 35.77 4.44
1244 1307 5.590259 ACAAACCGAAATATTCATCTGAGGG 59.410 40.000 0.00 0.00 0.00 4.30
1258 1321 3.679389 TCTGAGGGAAGAAAAGATGCAC 58.321 45.455 0.00 0.00 0.00 4.57
1266 1329 3.795688 AGAAAAGATGCACTTCCTCCA 57.204 42.857 0.00 0.00 37.93 3.86
1417 1480 1.051008 GGGATGGCAAAATGGGGATC 58.949 55.000 0.00 0.00 0.00 3.36
1657 1720 3.827008 AGTCACTTGCTGAACTGAGAA 57.173 42.857 0.00 0.00 0.00 2.87
1779 1842 8.050778 ACGATGTAAGAATATTTGCCAAAGAA 57.949 30.769 0.00 0.00 0.00 2.52
1878 1941 2.556622 CAAAGTGGTTAAGCATTCGGGT 59.443 45.455 11.06 0.00 0.00 5.28
2068 2131 3.704566 TGTCGACAAGGTATGGCTATTCT 59.295 43.478 17.62 0.00 33.51 2.40
2073 2136 5.178252 CGACAAGGTATGGCTATTCTTCATG 59.822 44.000 0.00 0.00 33.51 3.07
2102 2165 8.701895 ACCATAATTCGATACTCCTACTTCAAA 58.298 33.333 0.00 0.00 0.00 2.69
2155 2218 5.533903 CCATGCTGTAGCTCATTATTTTCCT 59.466 40.000 5.38 0.00 42.66 3.36
2173 2236 6.441093 TTTCCTTGCTACATGCTCTTAATG 57.559 37.500 0.00 0.00 43.37 1.90
2176 2239 5.586243 TCCTTGCTACATGCTCTTAATGTTC 59.414 40.000 0.00 0.00 43.37 3.18
2459 3043 5.254842 GTTCTTCCATTTTGTTTGTTTGCG 58.745 37.500 0.00 0.00 0.00 4.85
2529 3121 4.381292 CCCATGAATCACTTTTCTGCTTCC 60.381 45.833 0.00 0.00 0.00 3.46
2558 3150 6.650427 TCCAGTGTACTATCTTATGCGAAT 57.350 37.500 0.00 0.00 0.00 3.34
2593 3186 4.681978 AGTGTGGCCTTCGACCGC 62.682 66.667 3.32 0.00 38.22 5.68
2770 3363 1.806542 GACGCATCTGTGGTCAACATT 59.193 47.619 0.00 0.00 38.39 2.71
2797 3390 1.746220 CTCGACTTCTCCTCGAACCAT 59.254 52.381 0.00 0.00 39.58 3.55
2839 3432 1.741770 CTACCGCTTCAGGGTGCAC 60.742 63.158 8.80 8.80 38.50 4.57
2967 3565 3.589654 TTGAAGCCCCTGCGAGACG 62.590 63.158 0.00 0.00 44.33 4.18
3062 3660 3.322254 TCCTAGCTAGAGGTGCTAATTGC 59.678 47.826 22.70 0.00 41.70 3.56
3064 3662 3.922171 AGCTAGAGGTGCTAATTGCTT 57.078 42.857 0.00 0.00 43.37 3.91
3065 3663 3.539604 AGCTAGAGGTGCTAATTGCTTG 58.460 45.455 0.00 0.00 43.37 4.01
3078 3676 5.296780 GCTAATTGCTTGTATCTGGCAACTA 59.703 40.000 1.72 0.00 46.39 2.24
3079 3677 5.567138 AATTGCTTGTATCTGGCAACTAC 57.433 39.130 1.72 0.00 46.39 2.73
3107 3705 1.132643 CTCTGTACTCTACCGTGGCAC 59.867 57.143 7.79 7.79 0.00 5.01
3149 3747 0.035439 ATTAGGGCGTGAACTGGTGG 60.035 55.000 0.00 0.00 0.00 4.61
3158 3758 0.828022 TGAACTGGTGGTGTTCTCGT 59.172 50.000 7.89 0.00 42.86 4.18
3182 3783 5.293079 TGTGTTTGGAGTTTTTATTTGCTGC 59.707 36.000 0.00 0.00 0.00 5.25
3232 3835 6.814146 TCAACTATTATGTACATGACGTGCAA 59.186 34.615 18.81 3.05 43.90 4.08
3272 3876 2.025155 TGTCCTAGTCGCATCTCCTTC 58.975 52.381 0.00 0.00 0.00 3.46
3337 3941 0.537143 AACACTTGCAAGCCGGATGA 60.537 50.000 26.27 0.00 0.00 2.92
3339 3943 0.109597 CACTTGCAAGCCGGATGAAC 60.110 55.000 26.27 0.00 0.00 3.18
3340 3944 0.537143 ACTTGCAAGCCGGATGAACA 60.537 50.000 26.27 0.00 0.00 3.18
3376 3980 5.766670 AGCTTCTGACATTCTTCATGACAAA 59.233 36.000 0.00 0.00 37.15 2.83
3378 3982 6.919662 GCTTCTGACATTCTTCATGACAAAAA 59.080 34.615 0.00 0.00 37.15 1.94
3422 4026 4.694037 GCAAGTTCTATAGGACAACGGTTT 59.306 41.667 13.81 0.00 0.00 3.27
3439 4043 3.567530 GGTTTAACCCGCAATGTTGTAC 58.432 45.455 2.04 0.00 30.04 2.90
3449 4053 2.789092 GCAATGTTGTACGATGCTGAGC 60.789 50.000 0.00 0.00 32.00 4.26
3474 4078 1.202076 GCTGACTAAAAGGCGACATGC 60.202 52.381 0.00 0.00 45.38 4.06
3481 4085 1.317613 AAAGGCGACATGCTCAACAA 58.682 45.000 0.00 0.00 45.43 2.83
3490 4094 4.629634 CGACATGCTCAACAATTAGGTGTA 59.370 41.667 0.00 0.00 35.97 2.90
3503 4121 2.677542 AGGTGTAGCGGAGATGGATA 57.322 50.000 0.00 0.00 0.00 2.59
3508 4126 3.255888 GTGTAGCGGAGATGGATATGTGA 59.744 47.826 0.00 0.00 0.00 3.58
3518 4136 5.325239 AGATGGATATGTGACCATACGAGA 58.675 41.667 0.00 0.00 45.41 4.04
3533 4151 2.712709 ACGAGAAAGGATCGAGTCTGA 58.287 47.619 1.94 0.00 42.76 3.27
3534 4152 2.680841 ACGAGAAAGGATCGAGTCTGAG 59.319 50.000 1.94 0.00 42.76 3.35
3581 4199 4.273318 GGGTAGCACCAATTGAAGAGAAT 58.727 43.478 7.12 0.00 41.02 2.40
3630 4248 0.107017 ACATATTCAGCGCAGGCCTT 60.107 50.000 11.47 0.00 41.24 4.35
3639 4257 0.249447 GCGCAGGCCTTCAAAAGTTT 60.249 50.000 0.00 0.00 0.00 2.66
3644 4262 3.317993 GCAGGCCTTCAAAAGTTTCAGTA 59.682 43.478 0.00 0.00 0.00 2.74
3649 4267 6.775629 AGGCCTTCAAAAGTTTCAGTACATAA 59.224 34.615 0.00 0.00 0.00 1.90
3669 4287 0.666274 CAGACGGCTAAAGTGTGCGA 60.666 55.000 0.00 0.00 0.00 5.10
3671 4289 0.863144 GACGGCTAAAGTGTGCGAAA 59.137 50.000 0.00 0.00 0.00 3.46
3677 4295 4.048504 GGCTAAAGTGTGCGAAAAATGTT 58.951 39.130 0.00 0.00 0.00 2.71
3714 4332 5.293079 GGTAGACTGAATTTGACATGAGAGC 59.707 44.000 0.00 0.00 0.00 4.09
3739 4360 6.296145 CCTGTTAAGAGAGACCTGAAGGATTT 60.296 42.308 2.62 0.00 38.94 2.17
3753 4374 7.947890 ACCTGAAGGATTTGAGTATTACCAAAA 59.052 33.333 2.62 4.93 35.97 2.44
3791 4412 1.672881 GATGCGTGGAAGCTTGCTATT 59.327 47.619 19.34 0.00 38.13 1.73
3833 4454 1.865340 GGTCGCGAGATTTTATGGGTC 59.135 52.381 10.24 0.00 45.19 4.46
3840 4461 4.770795 CGAGATTTTATGGGTCTCACCTT 58.229 43.478 0.00 0.00 38.59 3.50
3883 4507 7.393796 TGGGACTAAAGACTTTGTTGTTGTTTA 59.606 33.333 10.80 0.00 0.00 2.01
3884 4508 7.699391 GGGACTAAAGACTTTGTTGTTGTTTAC 59.301 37.037 10.80 0.00 0.00 2.01
3885 4509 8.238631 GGACTAAAGACTTTGTTGTTGTTTACA 58.761 33.333 10.80 0.00 34.12 2.41
3886 4510 8.959734 ACTAAAGACTTTGTTGTTGTTTACAC 57.040 30.769 10.80 0.00 36.21 2.90
3887 4511 8.789762 ACTAAAGACTTTGTTGTTGTTTACACT 58.210 29.630 10.80 0.00 36.21 3.55
3888 4512 9.620660 CTAAAGACTTTGTTGTTGTTTACACTT 57.379 29.630 10.80 0.00 36.21 3.16
3889 4513 8.515473 AAAGACTTTGTTGTTGTTTACACTTC 57.485 30.769 0.00 0.00 36.21 3.01
3890 4514 6.311723 AGACTTTGTTGTTGTTTACACTTCG 58.688 36.000 0.00 0.00 36.21 3.79
3891 4515 5.395642 ACTTTGTTGTTGTTTACACTTCGG 58.604 37.500 0.00 0.00 36.21 4.30
3892 4516 3.408288 TGTTGTTGTTTACACTTCGGC 57.592 42.857 0.00 0.00 36.21 5.54
3893 4517 2.747989 TGTTGTTGTTTACACTTCGGCA 59.252 40.909 0.00 0.00 36.21 5.69
3894 4518 3.190744 TGTTGTTGTTTACACTTCGGCAA 59.809 39.130 0.00 0.00 36.21 4.52
3895 4519 3.684103 TGTTGTTTACACTTCGGCAAG 57.316 42.857 0.00 0.00 35.50 4.01
3896 4520 2.356382 TGTTGTTTACACTTCGGCAAGG 59.644 45.455 0.00 0.00 33.37 3.61
3897 4521 1.600023 TGTTTACACTTCGGCAAGGG 58.400 50.000 0.00 0.00 39.22 3.95
3898 4522 0.879090 GTTTACACTTCGGCAAGGGG 59.121 55.000 4.41 0.00 37.35 4.79
3899 4523 0.766131 TTTACACTTCGGCAAGGGGA 59.234 50.000 4.41 0.00 37.35 4.81
3900 4524 0.988832 TTACACTTCGGCAAGGGGAT 59.011 50.000 4.41 0.00 37.35 3.85
3901 4525 0.988832 TACACTTCGGCAAGGGGATT 59.011 50.000 4.41 0.00 37.35 3.01
3902 4526 0.112412 ACACTTCGGCAAGGGGATTT 59.888 50.000 4.41 0.00 37.35 2.17
3903 4527 1.256812 CACTTCGGCAAGGGGATTTT 58.743 50.000 0.00 0.00 33.37 1.82
3909 4533 2.559231 TCGGCAAGGGGATTTTACAAAC 59.441 45.455 0.00 0.00 0.00 2.93
3940 4564 4.946478 AACGCTGAGATAGGAATAGCTT 57.054 40.909 0.00 0.00 32.43 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.997129 AGAGACCTACTACTCGTAAATAGGC 59.003 44.000 11.34 6.95 36.63 3.93
56 57 2.354604 GGCTGGAAGAAGAACCTGAGAG 60.355 54.545 0.00 0.00 34.07 3.20
97 98 1.809209 GGCGCTGCAGAGAAGAGAC 60.809 63.158 22.55 1.61 0.00 3.36
121 122 6.321435 CACCTATATATATCCCGCTTGACTCA 59.679 42.308 0.00 0.00 0.00 3.41
124 125 5.597182 TCCACCTATATATATCCCGCTTGAC 59.403 44.000 0.00 0.00 0.00 3.18
172 173 1.731433 GCACCTACATGCATGGGCTG 61.731 60.000 29.41 20.23 45.39 4.85
196 197 3.965347 TGCTAGGATTTGTAGACTACCCC 59.035 47.826 10.14 6.32 0.00 4.95
207 208 3.306364 CCGGACCTAGATGCTAGGATTTG 60.306 52.174 23.47 11.62 38.09 2.32
209 210 2.530701 CCGGACCTAGATGCTAGGATT 58.469 52.381 23.47 5.57 38.09 3.01
225 226 4.094646 ATGCACACATCCGCCGGA 62.095 61.111 8.97 8.97 35.55 5.14
228 229 1.996786 CTTCCATGCACACATCCGCC 61.997 60.000 0.00 0.00 32.87 6.13
229 230 1.430632 CTTCCATGCACACATCCGC 59.569 57.895 0.00 0.00 32.87 5.54
232 233 0.179145 GCAGCTTCCATGCACACATC 60.179 55.000 0.00 0.00 43.31 3.06
233 234 1.888018 GCAGCTTCCATGCACACAT 59.112 52.632 0.00 0.00 43.31 3.21
234 235 3.357919 GCAGCTTCCATGCACACA 58.642 55.556 0.00 0.00 43.31 3.72
266 267 2.418628 GAGTAATTAGCGGCTGCAAACA 59.581 45.455 21.93 0.00 46.23 2.83
267 268 2.678336 AGAGTAATTAGCGGCTGCAAAC 59.322 45.455 21.93 9.73 46.23 2.93
269 270 2.093711 TGAGAGTAATTAGCGGCTGCAA 60.094 45.455 21.93 12.37 46.23 4.08
270 271 1.480545 TGAGAGTAATTAGCGGCTGCA 59.519 47.619 21.93 0.00 46.23 4.41
271 272 2.225068 TGAGAGTAATTAGCGGCTGC 57.775 50.000 13.86 10.33 43.24 5.25
272 273 3.722147 ACATGAGAGTAATTAGCGGCTG 58.278 45.455 13.86 0.00 0.00 4.85
274 275 4.238514 CCTACATGAGAGTAATTAGCGGC 58.761 47.826 0.00 0.00 0.00 6.53
275 276 5.223382 CACCTACATGAGAGTAATTAGCGG 58.777 45.833 0.00 0.00 0.00 5.52
276 277 4.681942 GCACCTACATGAGAGTAATTAGCG 59.318 45.833 0.00 0.00 0.00 4.26
277 278 5.601662 TGCACCTACATGAGAGTAATTAGC 58.398 41.667 0.00 0.00 0.00 3.09
279 280 7.360113 TGATGCACCTACATGAGAGTAATTA 57.640 36.000 0.00 0.00 0.00 1.40
280 281 6.239217 TGATGCACCTACATGAGAGTAATT 57.761 37.500 0.00 0.00 0.00 1.40
281 282 5.221601 CCTGATGCACCTACATGAGAGTAAT 60.222 44.000 0.00 0.00 33.61 1.89
282 283 4.100035 CCTGATGCACCTACATGAGAGTAA 59.900 45.833 0.00 0.00 33.61 2.24
283 284 3.638627 CCTGATGCACCTACATGAGAGTA 59.361 47.826 0.00 0.00 33.61 2.59
285 286 2.224233 CCCTGATGCACCTACATGAGAG 60.224 54.545 0.00 0.00 33.61 3.20
286 287 1.764723 CCCTGATGCACCTACATGAGA 59.235 52.381 0.00 0.00 33.61 3.27
287 288 1.202734 CCCCTGATGCACCTACATGAG 60.203 57.143 0.00 0.00 31.81 2.90
289 290 0.548031 ACCCCTGATGCACCTACATG 59.452 55.000 0.00 0.00 0.00 3.21
291 292 1.273609 ACTACCCCTGATGCACCTACA 60.274 52.381 0.00 0.00 0.00 2.74
292 293 1.413077 GACTACCCCTGATGCACCTAC 59.587 57.143 0.00 0.00 0.00 3.18
293 294 1.291033 AGACTACCCCTGATGCACCTA 59.709 52.381 0.00 0.00 0.00 3.08
295 296 1.413077 GTAGACTACCCCTGATGCACC 59.587 57.143 0.72 0.00 0.00 5.01
296 297 2.108168 TGTAGACTACCCCTGATGCAC 58.892 52.381 10.14 0.00 0.00 4.57
297 298 2.543037 TGTAGACTACCCCTGATGCA 57.457 50.000 10.14 0.00 0.00 3.96
298 299 3.906720 TTTGTAGACTACCCCTGATGC 57.093 47.619 10.14 0.00 0.00 3.91
299 300 4.656112 AGGATTTGTAGACTACCCCTGATG 59.344 45.833 10.14 0.00 0.00 3.07
300 301 4.897051 AGGATTTGTAGACTACCCCTGAT 58.103 43.478 10.14 0.00 0.00 2.90
301 302 4.348020 AGGATTTGTAGACTACCCCTGA 57.652 45.455 10.14 0.00 0.00 3.86
303 304 4.224762 GCTAGGATTTGTAGACTACCCCT 58.775 47.826 10.14 12.37 0.00 4.79
304 305 3.965347 TGCTAGGATTTGTAGACTACCCC 59.035 47.826 10.14 6.32 0.00 4.95
305 306 5.540719 AGATGCTAGGATTTGTAGACTACCC 59.459 44.000 10.14 4.09 0.00 3.69
306 307 6.658188 AGATGCTAGGATTTGTAGACTACC 57.342 41.667 10.14 0.00 0.00 3.18
307 308 7.449086 ACCTAGATGCTAGGATTTGTAGACTAC 59.551 40.741 23.47 5.62 38.09 2.73
308 309 7.527796 ACCTAGATGCTAGGATTTGTAGACTA 58.472 38.462 23.47 0.00 38.09 2.59
310 311 6.294843 GGACCTAGATGCTAGGATTTGTAGAC 60.295 46.154 23.47 6.33 38.09 2.59
311 312 5.775701 GGACCTAGATGCTAGGATTTGTAGA 59.224 44.000 23.47 0.00 38.09 2.59
312 313 5.336055 CGGACCTAGATGCTAGGATTTGTAG 60.336 48.000 23.47 0.81 38.09 2.74
313 314 4.523173 CGGACCTAGATGCTAGGATTTGTA 59.477 45.833 23.47 0.00 38.09 2.41
314 315 3.322254 CGGACCTAGATGCTAGGATTTGT 59.678 47.826 23.47 4.24 38.09 2.83
316 317 2.900546 CCGGACCTAGATGCTAGGATTT 59.099 50.000 23.47 4.91 38.09 2.17
318 319 1.893210 GCCGGACCTAGATGCTAGGAT 60.893 57.143 23.47 0.00 38.09 3.24
319 320 0.539901 GCCGGACCTAGATGCTAGGA 60.540 60.000 23.47 0.00 38.09 2.94
320 321 1.867919 CGCCGGACCTAGATGCTAGG 61.868 65.000 16.84 16.84 40.49 3.02
321 322 1.581954 CGCCGGACCTAGATGCTAG 59.418 63.158 5.05 0.00 0.00 3.42
322 323 1.901948 CCGCCGGACCTAGATGCTA 60.902 63.158 5.05 0.00 0.00 3.49
324 325 2.574955 ATCCGCCGGACCTAGATGC 61.575 63.158 8.62 0.00 32.98 3.91
326 327 1.152525 ACATCCGCCGGACCTAGAT 60.153 57.895 8.62 0.00 32.98 1.98
327 328 2.125326 CACATCCGCCGGACCTAGA 61.125 63.158 8.62 0.00 32.98 2.43
388 443 6.825721 GGATGATTGGTTGACTGAGAGTAATT 59.174 38.462 0.00 0.00 0.00 1.40
389 444 6.070021 TGGATGATTGGTTGACTGAGAGTAAT 60.070 38.462 0.00 0.00 0.00 1.89
390 445 5.248248 TGGATGATTGGTTGACTGAGAGTAA 59.752 40.000 0.00 0.00 0.00 2.24
391 446 4.777366 TGGATGATTGGTTGACTGAGAGTA 59.223 41.667 0.00 0.00 0.00 2.59
392 447 3.584406 TGGATGATTGGTTGACTGAGAGT 59.416 43.478 0.00 0.00 0.00 3.24
404 459 6.201517 CAAGTATTTTAGCGTGGATGATTGG 58.798 40.000 0.00 0.00 0.00 3.16
415 470 7.096230 CCAAAGTTTTGACCAAGTATTTTAGCG 60.096 37.037 6.18 0.00 40.55 4.26
425 480 6.183360 GCTGTTTTACCAAAGTTTTGACCAAG 60.183 38.462 6.18 0.00 40.55 3.61
449 504 3.444703 TTACATGTGTTTGGTTGGTGC 57.555 42.857 9.11 0.00 0.00 5.01
508 564 0.032813 ATTCTCCTGGGTGGGCATTG 60.033 55.000 0.00 0.00 36.20 2.82
519 575 6.824305 ATTGAAAACCACAGTATTCTCCTG 57.176 37.500 0.00 0.00 36.01 3.86
522 578 8.106247 TGGTAATTGAAAACCACAGTATTCTC 57.894 34.615 0.00 0.00 40.84 2.87
549 605 2.732412 TGTTGTTGTTGTTGGTGGTG 57.268 45.000 0.00 0.00 0.00 4.17
550 606 2.365617 TGTTGTTGTTGTTGTTGGTGGT 59.634 40.909 0.00 0.00 0.00 4.16
551 607 3.032017 TGTTGTTGTTGTTGTTGGTGG 57.968 42.857 0.00 0.00 0.00 4.61
552 608 3.804325 TGTTGTTGTTGTTGTTGTTGGTG 59.196 39.130 0.00 0.00 0.00 4.17
553 609 4.060038 TGTTGTTGTTGTTGTTGTTGGT 57.940 36.364 0.00 0.00 0.00 3.67
554 610 5.409643 TTTGTTGTTGTTGTTGTTGTTGG 57.590 34.783 0.00 0.00 0.00 3.77
555 611 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
556 612 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
557 613 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
558 614 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
559 615 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
560 616 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
561 617 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
562 618 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
563 619 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
564 620 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
565 621 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
566 622 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
567 623 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
568 624 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
569 625 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
570 626 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
571 627 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
572 628 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
573 629 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
574 630 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
575 631 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
576 632 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
577 633 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
588 644 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
589 645 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
590 646 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
591 647 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
592 648 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
593 649 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
594 650 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
595 651 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
596 652 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
597 653 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
598 654 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
599 655 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
600 656 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
601 657 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
602 658 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
603 659 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
604 660 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
605 661 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
606 662 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
607 663 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
608 664 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
609 665 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
610 666 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
611 667 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
612 668 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
613 669 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
614 670 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
615 671 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
616 672 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
617 673 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
618 674 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
619 675 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
620 676 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
621 677 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
622 678 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
623 679 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
624 680 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
625 681 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
626 682 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
627 683 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
636 692 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
637 693 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
638 694 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
639 695 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
640 696 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
641 697 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
642 698 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
643 699 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
644 700 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
645 701 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
646 702 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
647 703 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
648 704 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
649 705 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
650 706 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
651 707 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
652 708 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
653 709 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
654 710 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
655 711 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
656 712 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
657 713 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
658 714 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
659 715 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
660 716 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
661 717 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
662 718 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
663 719 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
664 720 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
665 721 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
666 722 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
667 723 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
668 724 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
670 726 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
671 727 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
672 728 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
673 729 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
674 730 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
675 731 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
676 732 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
677 733 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
678 734 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
679 735 3.494048 CCAAAGAGCTAGCTATGGACAGG 60.494 52.174 27.69 15.84 30.53 4.00
680 736 3.133721 ACCAAAGAGCTAGCTATGGACAG 59.866 47.826 33.71 17.94 32.26 3.51
681 737 3.107601 ACCAAAGAGCTAGCTATGGACA 58.892 45.455 33.71 0.00 32.26 4.02
682 738 3.133003 TCACCAAAGAGCTAGCTATGGAC 59.867 47.826 33.71 18.05 32.26 4.02
683 739 3.374764 TCACCAAAGAGCTAGCTATGGA 58.625 45.455 33.71 19.25 32.26 3.41
684 740 3.827008 TCACCAAAGAGCTAGCTATGG 57.173 47.619 28.91 28.91 33.36 2.74
685 741 6.095432 AGTATCACCAAAGAGCTAGCTATG 57.905 41.667 19.38 16.41 0.00 2.23
686 742 5.245075 GGAGTATCACCAAAGAGCTAGCTAT 59.755 44.000 19.38 12.73 36.25 2.97
687 743 4.585162 GGAGTATCACCAAAGAGCTAGCTA 59.415 45.833 19.38 0.00 36.25 3.32
688 744 3.386402 GGAGTATCACCAAAGAGCTAGCT 59.614 47.826 19.45 19.45 36.25 3.32
689 745 3.133003 TGGAGTATCACCAAAGAGCTAGC 59.867 47.826 6.62 6.62 36.25 3.42
690 746 5.344743 TTGGAGTATCACCAAAGAGCTAG 57.655 43.478 0.00 0.00 43.22 3.42
696 752 9.647145 ACCTGAAGGATTGGAGTATCACCAAAG 62.647 44.444 2.62 0.00 43.17 2.77
697 753 7.950045 ACCTGAAGGATTGGAGTATCACCAAA 61.950 42.308 2.62 0.00 43.17 3.28
698 754 6.527086 ACCTGAAGGATTGGAGTATCACCAA 61.527 44.000 2.62 0.00 43.61 3.67
699 755 3.455910 CCTGAAGGATTGGAGTATCACCA 59.544 47.826 0.00 0.00 34.60 4.17
700 756 3.456277 ACCTGAAGGATTGGAGTATCACC 59.544 47.826 2.62 0.00 38.94 4.02
701 757 4.407296 AGACCTGAAGGATTGGAGTATCAC 59.593 45.833 2.62 0.00 38.94 3.06
702 758 4.624913 AGACCTGAAGGATTGGAGTATCA 58.375 43.478 2.62 0.00 38.94 2.15
703 759 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
704 760 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
705 761 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
706 762 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
707 763 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
708 764 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
709 765 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
710 766 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
711 767 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
712 768 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
713 769 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
714 770 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
715 771 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
716 772 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
717 773 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
718 774 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
719 775 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
720 776 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
721 777 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
722 778 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
723 779 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
724 780 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
725 781 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
726 782 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
727 783 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
728 784 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
729 785 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
730 786 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
731 787 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
732 788 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
733 789 3.282885 GAATTTGACATGGGAGGAGTCC 58.717 50.000 0.00 0.00 43.05 3.85
734 790 2.939103 CGAATTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
735 791 2.356125 CCGAATTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
736 792 2.292267 CCGAATTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
737 793 1.633432 ACCGAATTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
738 794 2.017049 GACCGAATTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
739 795 2.991250 AGACCGAATTTGACATGGGAG 58.009 47.619 0.00 0.00 0.00 4.30
740 796 3.370103 GGTAGACCGAATTTGACATGGGA 60.370 47.826 0.00 0.00 0.00 4.37
741 797 2.943033 GGTAGACCGAATTTGACATGGG 59.057 50.000 0.00 0.00 0.00 4.00
742 798 2.943033 GGGTAGACCGAATTTGACATGG 59.057 50.000 0.00 0.00 36.71 3.66
743 799 2.943033 GGGGTAGACCGAATTTGACATG 59.057 50.000 0.00 0.00 41.60 3.21
744 800 3.277142 GGGGTAGACCGAATTTGACAT 57.723 47.619 0.00 0.00 41.60 3.06
745 801 2.773993 GGGGTAGACCGAATTTGACA 57.226 50.000 0.00 0.00 41.60 3.58
755 811 2.838693 GAGAGGGCGGGGTAGACC 60.839 72.222 0.00 0.00 40.48 3.85
756 812 1.381463 AAGAGAGGGCGGGGTAGAC 60.381 63.158 0.00 0.00 0.00 2.59
757 813 1.381327 CAAGAGAGGGCGGGGTAGA 60.381 63.158 0.00 0.00 0.00 2.59
758 814 1.381327 TCAAGAGAGGGCGGGGTAG 60.381 63.158 0.00 0.00 0.00 3.18
759 815 1.684734 GTCAAGAGAGGGCGGGGTA 60.685 63.158 0.00 0.00 0.00 3.69
760 816 3.003763 GTCAAGAGAGGGCGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
761 817 1.915078 AATGTCAAGAGAGGGCGGGG 61.915 60.000 0.00 0.00 0.00 5.73
762 818 0.462759 GAATGTCAAGAGAGGGCGGG 60.463 60.000 0.00 0.00 0.00 6.13
763 819 0.539051 AGAATGTCAAGAGAGGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
764 820 1.472376 GGAGAATGTCAAGAGAGGGCG 60.472 57.143 0.00 0.00 0.00 6.13
765 821 1.472376 CGGAGAATGTCAAGAGAGGGC 60.472 57.143 0.00 0.00 0.00 5.19
766 822 1.472376 GCGGAGAATGTCAAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
767 823 1.205655 TGCGGAGAATGTCAAGAGAGG 59.794 52.381 0.00 0.00 0.00 3.69
768 824 2.266554 GTGCGGAGAATGTCAAGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
769 825 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
770 826 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
771 827 1.014044 GCGTGCGGAGAATGTCAAGA 61.014 55.000 0.00 0.00 0.00 3.02
772 828 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
773 829 0.602638 AAGCGTGCGGAGAATGTCAA 60.603 50.000 0.00 0.00 0.00 3.18
774 830 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
775 831 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
776 832 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
777 833 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
778 834 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
779 835 1.740296 GGCTAAAGCGTGCGGAGAA 60.740 57.895 0.00 0.00 43.26 2.87
780 836 2.125673 GGCTAAAGCGTGCGGAGA 60.126 61.111 0.00 0.00 43.26 3.71
781 837 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
782 838 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
783 839 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
784 840 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
785 841 3.849953 CGGACGGCTAAAGCGTGC 61.850 66.667 0.00 0.00 43.26 5.34
786 842 3.849953 GCGGACGGCTAAAGCGTG 61.850 66.667 0.00 0.00 43.26 5.34
795 851 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
796 852 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
797 853 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
798 854 0.108138 AACTCCAGTGCATAGCGGAC 60.108 55.000 0.00 0.00 35.88 4.79
799 855 0.613260 AAACTCCAGTGCATAGCGGA 59.387 50.000 0.00 0.00 0.00 5.54
800 856 1.398390 GAAAACTCCAGTGCATAGCGG 59.602 52.381 0.00 0.00 0.00 5.52
801 857 2.076100 TGAAAACTCCAGTGCATAGCG 58.924 47.619 0.00 0.00 0.00 4.26
802 858 4.708726 ATTGAAAACTCCAGTGCATAGC 57.291 40.909 0.00 0.00 0.00 2.97
803 859 6.150976 TGGTAATTGAAAACTCCAGTGCATAG 59.849 38.462 0.00 0.00 0.00 2.23
804 860 6.007076 TGGTAATTGAAAACTCCAGTGCATA 58.993 36.000 0.00 0.00 0.00 3.14
805 861 4.832266 TGGTAATTGAAAACTCCAGTGCAT 59.168 37.500 0.00 0.00 0.00 3.96
806 862 4.037446 GTGGTAATTGAAAACTCCAGTGCA 59.963 41.667 0.00 0.00 0.00 4.57
807 863 4.037446 TGTGGTAATTGAAAACTCCAGTGC 59.963 41.667 0.00 0.00 0.00 4.40
808 864 5.299279 ACTGTGGTAATTGAAAACTCCAGTG 59.701 40.000 0.00 0.00 30.69 3.66
809 865 5.445964 ACTGTGGTAATTGAAAACTCCAGT 58.554 37.500 0.00 0.00 0.00 4.00
810 866 6.391227 AACTGTGGTAATTGAAAACTCCAG 57.609 37.500 0.00 0.00 0.00 3.86
811 867 6.783708 AAACTGTGGTAATTGAAAACTCCA 57.216 33.333 0.00 0.00 0.00 3.86
812 868 9.589111 TTTTAAACTGTGGTAATTGAAAACTCC 57.411 29.630 0.00 0.00 0.00 3.85
836 892 7.308529 GGCTTAGTTTGGCAGCAAAATATTTTT 60.309 33.333 10.77 0.00 35.05 1.94
837 893 6.149308 GGCTTAGTTTGGCAGCAAAATATTTT 59.851 34.615 7.64 7.64 35.05 1.82
838 894 5.643348 GGCTTAGTTTGGCAGCAAAATATTT 59.357 36.000 0.00 0.00 35.05 1.40
839 895 5.046376 AGGCTTAGTTTGGCAGCAAAATATT 60.046 36.000 0.00 0.00 35.05 1.28
840 896 4.467438 AGGCTTAGTTTGGCAGCAAAATAT 59.533 37.500 0.00 0.00 35.05 1.28
841 897 3.831911 AGGCTTAGTTTGGCAGCAAAATA 59.168 39.130 0.00 0.00 35.05 1.40
842 898 2.634453 AGGCTTAGTTTGGCAGCAAAAT 59.366 40.909 0.00 0.00 35.05 1.82
843 899 2.038659 AGGCTTAGTTTGGCAGCAAAA 58.961 42.857 0.00 0.00 35.05 2.44
844 900 1.703411 AGGCTTAGTTTGGCAGCAAA 58.297 45.000 0.00 0.00 35.05 3.68
845 901 1.703411 AAGGCTTAGTTTGGCAGCAA 58.297 45.000 0.00 0.00 35.05 3.91
846 902 2.577606 TAAGGCTTAGTTTGGCAGCA 57.422 45.000 2.04 0.00 35.05 4.41
847 903 3.193479 ACATTAAGGCTTAGTTTGGCAGC 59.807 43.478 7.09 0.00 0.00 5.25
848 904 5.391312 AACATTAAGGCTTAGTTTGGCAG 57.609 39.130 7.09 0.00 0.00 4.85
849 905 6.007703 AGTAACATTAAGGCTTAGTTTGGCA 58.992 36.000 14.67 0.00 0.00 4.92
850 906 6.374613 AGAGTAACATTAAGGCTTAGTTTGGC 59.625 38.462 14.67 7.99 0.00 4.52
851 907 7.626452 GCAGAGTAACATTAAGGCTTAGTTTGG 60.626 40.741 14.67 1.70 0.00 3.28
852 908 7.094805 TGCAGAGTAACATTAAGGCTTAGTTTG 60.095 37.037 14.67 12.49 0.00 2.93
853 909 6.940298 TGCAGAGTAACATTAAGGCTTAGTTT 59.060 34.615 14.67 8.94 0.00 2.66
854 910 6.371825 GTGCAGAGTAACATTAAGGCTTAGTT 59.628 38.462 14.10 14.10 0.00 2.24
855 911 5.875359 GTGCAGAGTAACATTAAGGCTTAGT 59.125 40.000 7.09 1.28 0.00 2.24
856 912 5.874810 TGTGCAGAGTAACATTAAGGCTTAG 59.125 40.000 7.09 0.00 0.00 2.18
857 913 5.800296 TGTGCAGAGTAACATTAAGGCTTA 58.200 37.500 2.04 2.04 0.00 3.09
858 914 4.651778 TGTGCAGAGTAACATTAAGGCTT 58.348 39.130 4.58 4.58 0.00 4.35
859 915 4.020218 TCTGTGCAGAGTAACATTAAGGCT 60.020 41.667 11.09 0.00 32.82 4.58
860 916 4.253685 TCTGTGCAGAGTAACATTAAGGC 58.746 43.478 11.09 0.00 32.82 4.35
865 921 7.770433 TGCTATAAATCTGTGCAGAGTAACATT 59.230 33.333 11.09 0.20 41.33 2.71
938 995 7.656707 ACAAACTGGAAATAATGATGCAAAC 57.343 32.000 0.00 0.00 0.00 2.93
1027 1084 4.285517 TGCATGGTTCCCATTTGTATTTGT 59.714 37.500 0.00 0.00 42.23 2.83
1095 1152 3.270027 AGGCTTTTTCTTTGCAACAACC 58.730 40.909 0.00 0.00 0.00 3.77
1113 1173 2.498078 AGTAAGAAGCTCAGGTGTAGGC 59.502 50.000 0.00 0.00 0.00 3.93
1176 1236 7.224297 GGCTTGTATGACCAATATCCTTCTTA 58.776 38.462 0.00 0.00 0.00 2.10
1227 1290 9.401058 TCTTTTCTTCCCTCAGATGAATATTTC 57.599 33.333 0.00 0.00 38.17 2.17
1244 1307 4.074970 TGGAGGAAGTGCATCTTTTCTTC 58.925 43.478 4.37 4.37 36.40 2.87
1258 1321 3.547567 CAGAAGGTGCTGGAGGAAG 57.452 57.895 0.00 0.00 32.26 3.46
1299 1362 6.183360 CCCACTTGGCTTTTTCTTGTTTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
1308 1371 3.132824 CAGTTTCCCACTTGGCTTTTTCT 59.867 43.478 0.00 0.00 30.92 2.52
1441 1504 4.873010 TCTACCTTGGATAGTCTGCTCTT 58.127 43.478 0.00 0.00 0.00 2.85
1779 1842 4.756564 TGGCTATCTCCATCTCCACTATT 58.243 43.478 0.00 0.00 0.00 1.73
1818 1881 3.298619 TGCATAATCCACCATTCCAAGG 58.701 45.455 0.00 0.00 0.00 3.61
1950 2013 1.615392 GCAAAACATTCTCCTGGCTGT 59.385 47.619 0.00 0.00 0.00 4.40
2073 2136 9.623350 GAAGTAGGAGTATCGAATTATGGTAAC 57.377 37.037 0.00 0.00 34.37 2.50
2173 2236 6.146184 TCTCAAATCAGAAATGTCGACAGAAC 59.854 38.462 24.41 15.92 0.00 3.01
2176 2239 6.659361 ATCTCAAATCAGAAATGTCGACAG 57.341 37.500 24.41 9.88 0.00 3.51
2289 2354 2.889045 AGAGCTGCATGTTGTTTGATGT 59.111 40.909 1.02 0.00 0.00 3.06
2333 2405 4.336280 AGCCTAATTGAGGGAAAGAACAC 58.664 43.478 0.00 0.00 46.81 3.32
2529 3121 7.115520 CGCATAAGATAGTACACTGGAATGAAG 59.884 40.741 0.00 0.00 0.00 3.02
2593 3186 2.262774 AATCCTTGGGAGCGCTGGAG 62.263 60.000 18.48 6.80 34.05 3.86
2755 3348 2.426522 CGGACAATGTTGACCACAGAT 58.573 47.619 13.17 0.00 41.99 2.90
2758 3351 1.169661 GCCGGACAATGTTGACCACA 61.170 55.000 5.05 0.00 41.99 4.17
2770 3363 2.341101 GGAGAAGTCGAGCCGGACA 61.341 63.158 5.05 0.00 39.42 4.02
2967 3565 7.824779 ACAGATTAGAATCAACTTGAACCTACC 59.175 37.037 5.11 0.00 37.89 3.18
3062 3660 4.260375 GCAATCGTAGTTGCCAGATACAAG 60.260 45.833 10.38 0.00 46.69 3.16
3064 3662 3.194861 GCAATCGTAGTTGCCAGATACA 58.805 45.455 10.38 0.00 46.69 2.29
3065 3663 3.861569 GCAATCGTAGTTGCCAGATAC 57.138 47.619 10.38 0.00 46.69 2.24
3078 3676 3.628487 GGTAGAGTACAGAGAGCAATCGT 59.372 47.826 0.00 0.00 0.00 3.73
3079 3677 3.303461 CGGTAGAGTACAGAGAGCAATCG 60.303 52.174 0.00 0.00 0.00 3.34
3137 3735 1.217882 GAGAACACCACCAGTTCACG 58.782 55.000 8.54 0.00 45.93 4.35
3149 3747 2.277084 ACTCCAAACACACGAGAACAC 58.723 47.619 0.00 0.00 0.00 3.32
3158 3758 5.293079 GCAGCAAATAAAAACTCCAAACACA 59.707 36.000 0.00 0.00 0.00 3.72
3182 3783 4.900635 AAACAAATATAGGGCAAGCTCG 57.099 40.909 0.00 0.00 0.00 5.03
3214 3817 2.668945 CCGTTGCACGTCATGTACATAA 59.331 45.455 8.32 0.00 40.58 1.90
3232 3835 7.166167 AGGACAGTTTTAATCTTGATAACCGT 58.834 34.615 0.00 0.00 0.00 4.83
3272 3876 3.497118 TGCAGAAACGAAAAATATGGCG 58.503 40.909 0.00 0.00 0.00 5.69
3311 3915 2.626840 GGCTTGCAAGTGTTCCAAAAA 58.373 42.857 26.55 0.00 0.00 1.94
3312 3916 1.470632 CGGCTTGCAAGTGTTCCAAAA 60.471 47.619 26.55 0.00 0.00 2.44
3313 3917 0.102120 CGGCTTGCAAGTGTTCCAAA 59.898 50.000 26.55 0.00 0.00 3.28
3314 3918 1.732917 CGGCTTGCAAGTGTTCCAA 59.267 52.632 26.55 0.00 0.00 3.53
3315 3919 2.192861 CCGGCTTGCAAGTGTTCCA 61.193 57.895 26.55 0.00 0.00 3.53
3316 3920 1.244019 ATCCGGCTTGCAAGTGTTCC 61.244 55.000 26.55 17.78 0.00 3.62
3317 3921 0.109597 CATCCGGCTTGCAAGTGTTC 60.110 55.000 26.55 10.52 0.00 3.18
3318 3922 0.537143 TCATCCGGCTTGCAAGTGTT 60.537 50.000 26.55 8.97 0.00 3.32
3319 3923 0.537143 TTCATCCGGCTTGCAAGTGT 60.537 50.000 26.55 6.81 0.00 3.55
3320 3924 0.109597 GTTCATCCGGCTTGCAAGTG 60.110 55.000 26.55 18.84 0.00 3.16
3321 3925 0.537143 TGTTCATCCGGCTTGCAAGT 60.537 50.000 26.55 4.42 0.00 3.16
3322 3926 0.597568 TTGTTCATCCGGCTTGCAAG 59.402 50.000 22.44 22.44 0.00 4.01
3323 3927 1.000385 CTTTGTTCATCCGGCTTGCAA 60.000 47.619 0.00 0.00 0.00 4.08
3324 3928 0.597568 CTTTGTTCATCCGGCTTGCA 59.402 50.000 0.00 0.00 0.00 4.08
3325 3929 0.598065 ACTTTGTTCATCCGGCTTGC 59.402 50.000 0.00 0.00 0.00 4.01
3337 3941 1.675720 AAGCTTGGCGCCACTTTGTT 61.676 50.000 32.95 15.59 40.39 2.83
3339 3943 1.372128 GAAGCTTGGCGCCACTTTG 60.372 57.895 32.95 20.20 40.39 2.77
3340 3944 1.529244 AGAAGCTTGGCGCCACTTT 60.529 52.632 32.95 23.16 40.39 2.66
3376 3980 5.182487 CCTTTTACCTTTTGTGGCACTTTT 58.818 37.500 19.83 0.00 0.00 2.27
3378 3982 3.431626 GCCTTTTACCTTTTGTGGCACTT 60.432 43.478 19.83 0.00 38.79 3.16
3422 4026 2.452295 TCGTACAACATTGCGGGTTA 57.548 45.000 0.00 0.00 0.00 2.85
3439 4043 2.816958 AGCCAACGCTCAGCATCG 60.817 61.111 0.00 0.00 43.95 3.84
3449 4053 0.165944 CGCCTTTTAGTCAGCCAACG 59.834 55.000 0.00 0.00 0.00 4.10
3456 4060 2.289382 TGAGCATGTCGCCTTTTAGTCA 60.289 45.455 0.00 0.00 44.04 3.41
3474 4078 3.857052 TCCGCTACACCTAATTGTTGAG 58.143 45.455 0.00 0.00 0.00 3.02
3481 4085 2.958818 TCCATCTCCGCTACACCTAAT 58.041 47.619 0.00 0.00 0.00 1.73
3490 4094 1.620819 GGTCACATATCCATCTCCGCT 59.379 52.381 0.00 0.00 0.00 5.52
3503 4121 4.499865 CGATCCTTTCTCGTATGGTCACAT 60.500 45.833 0.00 0.00 41.13 3.21
3508 4126 3.288964 ACTCGATCCTTTCTCGTATGGT 58.711 45.455 0.00 0.00 37.40 3.55
3512 4130 3.870274 TCAGACTCGATCCTTTCTCGTA 58.130 45.455 0.00 0.00 37.40 3.43
3518 4136 4.892345 TCATCATCTCAGACTCGATCCTTT 59.108 41.667 0.00 0.00 0.00 3.11
3533 4151 9.119418 CCAACTCTATCTCGTATATCATCATCT 57.881 37.037 0.00 0.00 0.00 2.90
3534 4152 8.349245 CCCAACTCTATCTCGTATATCATCATC 58.651 40.741 0.00 0.00 0.00 2.92
3581 4199 6.126681 ACCATCTCATATGATGTTGGACAAGA 60.127 38.462 24.55 9.89 41.47 3.02
3597 4215 5.533903 GCTGAATATGTCCAAACCATCTCAT 59.466 40.000 0.00 0.00 0.00 2.90
3630 4248 7.042321 CCGTCTGTTATGTACTGAAACTTTTGA 60.042 37.037 0.00 0.00 36.60 2.69
3639 4257 5.184479 ACTTTAGCCGTCTGTTATGTACTGA 59.816 40.000 0.00 0.00 32.93 3.41
3644 4262 3.994392 CACACTTTAGCCGTCTGTTATGT 59.006 43.478 0.00 0.00 0.00 2.29
3649 4267 0.944311 CGCACACTTTAGCCGTCTGT 60.944 55.000 0.00 0.00 0.00 3.41
3669 4287 4.202535 ACCCCGACCTCTCTTAACATTTTT 60.203 41.667 0.00 0.00 0.00 1.94
3671 4289 2.910977 ACCCCGACCTCTCTTAACATTT 59.089 45.455 0.00 0.00 0.00 2.32
3677 4295 2.092538 CAGTCTACCCCGACCTCTCTTA 60.093 54.545 0.00 0.00 34.46 2.10
3714 4332 4.090090 TCCTTCAGGTCTCTCTTAACAGG 58.910 47.826 0.00 0.00 36.34 4.00
3753 4374 4.683400 CGCATCCCTGTCCATAACTAGTTT 60.683 45.833 14.49 0.00 0.00 2.66
3760 4381 0.180171 CCACGCATCCCTGTCCATAA 59.820 55.000 0.00 0.00 0.00 1.90
3772 4393 1.672881 GAATAGCAAGCTTCCACGCAT 59.327 47.619 8.96 0.00 0.00 4.73
3791 4412 0.107361 CTCATGGCTCTGGCACATGA 60.107 55.000 15.19 15.19 45.03 3.07
3833 4454 4.137543 ACAAGTTGAAGGCTAAAGGTGAG 58.862 43.478 10.54 0.00 0.00 3.51
3840 4461 3.634910 GTCCCAAACAAGTTGAAGGCTAA 59.365 43.478 10.54 0.00 39.87 3.09
3883 4507 0.112412 AAATCCCCTTGCCGAAGTGT 59.888 50.000 0.00 0.00 0.00 3.55
3884 4508 1.256812 AAAATCCCCTTGCCGAAGTG 58.743 50.000 0.00 0.00 0.00 3.16
3885 4509 2.224917 TGTAAAATCCCCTTGCCGAAGT 60.225 45.455 0.00 0.00 0.00 3.01
3886 4510 2.442413 TGTAAAATCCCCTTGCCGAAG 58.558 47.619 0.00 0.00 0.00 3.79
3887 4511 2.588464 TGTAAAATCCCCTTGCCGAA 57.412 45.000 0.00 0.00 0.00 4.30
3888 4512 2.559231 GTTTGTAAAATCCCCTTGCCGA 59.441 45.455 0.00 0.00 0.00 5.54
3889 4513 2.297597 TGTTTGTAAAATCCCCTTGCCG 59.702 45.455 0.00 0.00 0.00 5.69
3890 4514 4.551702 ATGTTTGTAAAATCCCCTTGCC 57.448 40.909 0.00 0.00 0.00 4.52
3891 4515 6.538381 CCAATATGTTTGTAAAATCCCCTTGC 59.462 38.462 0.00 0.00 0.00 4.01
3892 4516 7.619965 ACCAATATGTTTGTAAAATCCCCTTG 58.380 34.615 0.00 0.00 0.00 3.61
3893 4517 7.806680 ACCAATATGTTTGTAAAATCCCCTT 57.193 32.000 0.00 0.00 0.00 3.95
3894 4518 8.903059 TTACCAATATGTTTGTAAAATCCCCT 57.097 30.769 0.00 0.00 0.00 4.79
3895 4519 9.373603 GTTTACCAATATGTTTGTAAAATCCCC 57.626 33.333 11.53 0.00 37.25 4.81
3896 4520 9.078753 CGTTTACCAATATGTTTGTAAAATCCC 57.921 33.333 11.53 2.06 37.25 3.85
3897 4521 8.588789 GCGTTTACCAATATGTTTGTAAAATCC 58.411 33.333 11.53 2.33 37.25 3.01
3898 4522 9.349145 AGCGTTTACCAATATGTTTGTAAAATC 57.651 29.630 11.53 7.77 37.25 2.17
3899 4523 9.134734 CAGCGTTTACCAATATGTTTGTAAAAT 57.865 29.630 11.53 1.92 37.25 1.82
3900 4524 8.350722 TCAGCGTTTACCAATATGTTTGTAAAA 58.649 29.630 11.53 0.00 37.25 1.52
3901 4525 7.872881 TCAGCGTTTACCAATATGTTTGTAAA 58.127 30.769 7.30 7.30 34.76 2.01
3902 4526 7.388224 TCTCAGCGTTTACCAATATGTTTGTAA 59.612 33.333 0.00 0.00 0.00 2.41
3903 4527 6.874664 TCTCAGCGTTTACCAATATGTTTGTA 59.125 34.615 0.00 0.00 0.00 2.41
3909 4533 6.455647 TCCTATCTCAGCGTTTACCAATATG 58.544 40.000 0.00 0.00 0.00 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.