Multiple sequence alignment - TraesCS1A01G108000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G108000 chr1A 100.000 7888 0 0 1 7888 107099993 107107880 0.000000e+00 14567.0
1 TraesCS1A01G108000 chr1A 90.840 131 8 4 2608 2734 67827942 67827812 1.050000e-38 172.0
2 TraesCS1A01G108000 chr1A 100.000 40 0 0 7024 7063 107106976 107107015 3.050000e-09 75.0
3 TraesCS1A01G108000 chr1A 100.000 40 0 0 6984 7023 107107016 107107055 3.050000e-09 75.0
4 TraesCS1A01G108000 chr1D 96.419 1899 63 4 2605 4499 106242825 106240928 0.000000e+00 3125.0
5 TraesCS1A01G108000 chr1D 94.118 1785 83 14 836 2604 106244648 106242870 0.000000e+00 2695.0
6 TraesCS1A01G108000 chr1D 96.536 1068 19 6 5162 6216 106240037 106238975 0.000000e+00 1751.0
7 TraesCS1A01G108000 chr1D 92.229 785 26 14 6215 6970 106239010 106238232 0.000000e+00 1079.0
8 TraesCS1A01G108000 chr1D 92.898 704 29 9 4493 5179 106240882 106240183 0.000000e+00 1003.0
9 TraesCS1A01G108000 chr1D 92.143 700 28 9 7205 7888 106238196 106237508 0.000000e+00 963.0
10 TraesCS1A01G108000 chr1D 89.238 604 50 12 46 645 106246288 106245696 0.000000e+00 741.0
11 TraesCS1A01G108000 chr1D 93.382 136 7 2 675 809 106244770 106244636 4.830000e-47 200.0
12 TraesCS1A01G108000 chr1D 91.667 132 7 3 2607 2734 139539234 139539365 6.290000e-41 180.0
13 TraesCS1A01G108000 chr1D 87.407 135 13 3 7042 7173 402722839 402722972 1.370000e-32 152.0
14 TraesCS1A01G108000 chr1D 85.321 109 14 2 101 209 106245966 106245860 2.330000e-20 111.0
15 TraesCS1A01G108000 chr1D 88.889 90 7 1 6059 6148 106239039 106238953 3.010000e-19 108.0
16 TraesCS1A01G108000 chr1B 93.586 1715 89 10 2778 4483 161204772 161206474 0.000000e+00 2538.0
17 TraesCS1A01G108000 chr1B 92.845 1747 56 27 5255 6970 161207932 161209640 0.000000e+00 2470.0
18 TraesCS1A01G108000 chr1B 94.867 1013 45 5 1589 2597 161203509 161204518 0.000000e+00 1576.0
19 TraesCS1A01G108000 chr1B 91.852 675 39 6 892 1551 161202837 161203510 0.000000e+00 928.0
20 TraesCS1A01G108000 chr1B 95.238 567 19 5 7330 7888 161209758 161210324 0.000000e+00 891.0
21 TraesCS1A01G108000 chr1B 95.808 334 11 1 6292 6625 161208948 161209278 3.240000e-148 536.0
22 TraesCS1A01G108000 chr1B 90.549 328 24 5 4656 4976 161206591 161206918 2.030000e-115 427.0
23 TraesCS1A01G108000 chr1B 87.584 298 19 5 4975 5260 161207077 161207368 5.900000e-86 329.0
24 TraesCS1A01G108000 chr1B 85.430 302 28 6 385 674 161201478 161201775 4.630000e-77 300.0
25 TraesCS1A01G108000 chr1B 97.122 139 2 1 4507 4643 458049412 458049274 4.760000e-57 233.0
26 TraesCS1A01G108000 chr1B 91.124 169 5 3 2605 2773 161204567 161204725 3.710000e-53 220.0
27 TraesCS1A01G108000 chr1B 90.291 103 4 5 2655 2752 39685550 39685449 6.420000e-26 130.0
28 TraesCS1A01G108000 chr1B 87.500 112 9 5 2655 2763 540278915 540278806 2.990000e-24 124.0
29 TraesCS1A01G108000 chr1B 88.235 68 8 0 6059 6126 161208806 161208873 1.820000e-11 82.4
30 TraesCS1A01G108000 chr1B 95.238 42 2 0 6175 6216 161208866 161208907 5.110000e-07 67.6
31 TraesCS1A01G108000 chr3D 82.373 295 51 1 4087 4380 281332363 281332069 1.020000e-63 255.0
32 TraesCS1A01G108000 chr3D 97.794 136 1 1 4507 4640 272505104 272504969 4.760000e-57 233.0
33 TraesCS1A01G108000 chr3D 84.722 144 17 2 3670 3813 333754317 333754179 1.070000e-28 139.0
34 TraesCS1A01G108000 chr3D 83.333 144 19 2 3670 3813 281332502 281332364 2.310000e-25 128.0
35 TraesCS1A01G108000 chr3D 97.959 49 1 0 2605 2653 506862061 506862109 1.410000e-12 86.1
36 TraesCS1A01G108000 chr7A 97.794 136 1 1 4507 4640 254417763 254417628 4.760000e-57 233.0
37 TraesCS1A01G108000 chr7A 83.621 116 14 2 3691 3806 711604761 711604871 3.890000e-18 104.0
38 TraesCS1A01G108000 chr7A 91.667 60 4 1 3664 3723 693620909 693620967 1.820000e-11 82.4
39 TraesCS1A01G108000 chr7A 89.474 57 6 0 3667 3723 711604697 711604753 1.100000e-08 73.1
40 TraesCS1A01G108000 chr5A 97.794 136 1 1 4507 4640 366234952 366234817 4.760000e-57 233.0
41 TraesCS1A01G108000 chr4A 97.794 136 1 1 4507 4640 362105813 362105678 4.760000e-57 233.0
42 TraesCS1A01G108000 chr4A 91.176 102 5 3 2637 2734 611113994 611114095 1.380000e-27 135.0
43 TraesCS1A01G108000 chr3A 97.794 136 1 1 4507 4640 308688673 308688538 4.760000e-57 233.0
44 TraesCS1A01G108000 chr2B 97.794 136 1 1 4507 4640 154991807 154991942 4.760000e-57 233.0
45 TraesCS1A01G108000 chr2B 79.661 177 24 5 3670 3845 745441756 745441591 5.000000e-22 117.0
46 TraesCS1A01G108000 chr5B 95.172 145 5 1 4495 4637 305587451 305587595 2.210000e-55 228.0
47 TraesCS1A01G108000 chr6D 92.857 154 7 3 4507 4657 260041553 260041705 3.710000e-53 220.0
48 TraesCS1A01G108000 chr6A 92.308 130 5 4 2605 2731 9480712 9480839 6.290000e-41 180.0
49 TraesCS1A01G108000 chr6A 88.235 119 14 0 3688 3806 477168158 477168040 8.250000e-30 143.0
50 TraesCS1A01G108000 chr4B 89.147 129 13 1 2605 2732 645076754 645076882 8.190000e-35 159.0
51 TraesCS1A01G108000 chr3B 86.466 133 16 1 7042 7172 207205454 207205322 2.290000e-30 145.0
52 TraesCS1A01G108000 chr5D 82.576 132 13 8 7044 7170 170266307 170266433 3.010000e-19 108.0
53 TraesCS1A01G108000 chr5D 96.000 50 2 0 2605 2654 132142069 132142118 1.820000e-11 82.4
54 TraesCS1A01G108000 chr4D 98.000 50 1 0 2605 2654 108862919 108862968 3.920000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G108000 chr1A 107099993 107107880 7887 False 4905.666667 14567 100.0000 1 7888 3 chr1A.!!$F1 7887
1 TraesCS1A01G108000 chr1D 106237508 106246288 8780 True 1177.600000 3125 92.1173 46 7888 10 chr1D.!!$R1 7842
2 TraesCS1A01G108000 chr1B 161201478 161210324 8846 False 863.750000 2538 91.8630 385 7888 12 chr1B.!!$F1 7503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 653 0.036952 CTTGCTGACGATCACCAGGT 60.037 55.000 11.79 0.0 0.00 4.00 F
1263 2233 0.025128 GCTCGTTTCTCGGATTTCGC 59.975 55.000 0.00 0.0 40.32 4.70 F
1514 2484 0.388659 TGGTGCTGTTTGATTGGTGC 59.611 50.000 0.00 0.0 0.00 5.01 F
1567 2544 0.595053 ATTCTCGTCGTGCTATGCCG 60.595 55.000 0.00 0.0 0.00 5.69 F
1869 2846 0.748005 ATGCCGGTCTTGGTGCATAC 60.748 55.000 1.90 0.0 42.30 2.39 F
3234 4304 0.961857 TGTGATGGCTGGTGATGCAC 60.962 55.000 0.00 0.0 0.00 4.57 F
3523 4593 1.134280 CAAGAGATTGATGGGAGCCGT 60.134 52.381 0.00 0.0 0.00 5.68 F
4394 5466 0.550914 GGACCTGATGCACCCCAATA 59.449 55.000 0.00 0.0 0.00 1.90 F
4652 5823 0.108585 GTTGTTGCCTCTCTCCCACA 59.891 55.000 0.00 0.0 0.00 4.17 F
5030 6382 0.454600 TAGGTCAGTTGGATCGACGC 59.545 55.000 0.00 0.0 0.00 5.19 F
6648 8776 0.950555 GAGTGATGGTGAACGCTGCA 60.951 55.000 0.00 0.0 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 2454 0.179029 ACAGCACCAAAGCCGTAGTT 60.179 50.000 0.00 0.00 34.23 2.24 R
2233 3214 0.316772 AGCGATCGTAACGGTCATCG 60.317 55.000 17.81 5.28 36.73 3.84 R
2591 3573 0.322098 TGGCTCGGGTATGTTGTTGG 60.322 55.000 0.00 0.00 0.00 3.77 R
2949 4019 1.448985 TATGCCGCAACAGAAGGAAC 58.551 50.000 0.00 0.00 0.00 3.62 R
3806 4876 2.587322 TAAATGAGACTGGGGCCGCG 62.587 60.000 15.95 12.29 0.00 6.46 R
4297 5369 0.033920 GTTTCAACTACGGTCGGGGT 59.966 55.000 0.00 0.00 0.00 4.95 R
4632 5803 0.108585 GTGGGAGAGAGGCAACAACA 59.891 55.000 0.00 0.00 41.41 3.33 R
6291 8391 1.508632 TACAAAGTTGCCGAGAGTGC 58.491 50.000 0.00 0.00 0.00 4.40 R
6648 8776 3.312736 AATTCAAGTTGAGGGTGGTGT 57.687 42.857 5.56 0.00 0.00 4.16 R
6673 8801 1.081892 CCCAAGAGACGATGCAACAG 58.918 55.000 0.00 0.00 0.00 3.16 R
7649 9809 0.591741 GATCGGTACCGCAGACGAAG 60.592 60.000 29.64 0.00 43.93 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.612472 GTGGTCGACATAGCTCTCTAC 57.388 52.381 18.91 0.00 0.00 2.59
21 22 2.943690 GTGGTCGACATAGCTCTCTACA 59.056 50.000 18.91 0.00 0.00 2.74
22 23 2.943690 TGGTCGACATAGCTCTCTACAC 59.056 50.000 18.91 0.00 0.00 2.90
23 24 2.943690 GGTCGACATAGCTCTCTACACA 59.056 50.000 18.91 0.00 0.00 3.72
24 25 3.002862 GGTCGACATAGCTCTCTACACAG 59.997 52.174 18.91 0.00 0.00 3.66
25 26 2.614520 TCGACATAGCTCTCTACACAGC 59.385 50.000 0.00 0.00 35.73 4.40
26 27 2.356069 CGACATAGCTCTCTACACAGCA 59.644 50.000 0.00 0.00 38.18 4.41
27 28 3.004210 CGACATAGCTCTCTACACAGCAT 59.996 47.826 0.00 0.00 38.18 3.79
28 29 4.297510 GACATAGCTCTCTACACAGCATG 58.702 47.826 0.00 0.00 46.00 4.06
29 30 2.879002 TAGCTCTCTACACAGCATGC 57.121 50.000 10.51 10.51 42.53 4.06
30 31 0.179116 AGCTCTCTACACAGCATGCG 60.179 55.000 13.01 9.99 42.53 4.73
31 32 0.459237 GCTCTCTACACAGCATGCGT 60.459 55.000 13.01 10.68 42.53 5.24
32 33 1.554392 CTCTCTACACAGCATGCGTC 58.446 55.000 13.01 0.00 42.53 5.19
33 34 0.887933 TCTCTACACAGCATGCGTCA 59.112 50.000 13.01 3.17 42.53 4.35
34 35 1.272212 TCTCTACACAGCATGCGTCAA 59.728 47.619 13.01 3.17 42.53 3.18
35 36 1.657594 CTCTACACAGCATGCGTCAAG 59.342 52.381 13.01 11.90 42.53 3.02
36 37 1.000843 TCTACACAGCATGCGTCAAGT 59.999 47.619 13.01 10.40 42.53 3.16
37 38 1.391485 CTACACAGCATGCGTCAAGTC 59.609 52.381 13.01 0.00 42.53 3.01
38 39 0.250038 ACACAGCATGCGTCAAGTCT 60.250 50.000 13.01 0.00 42.53 3.24
39 40 1.000843 ACACAGCATGCGTCAAGTCTA 59.999 47.619 13.01 0.00 42.53 2.59
40 41 1.657594 CACAGCATGCGTCAAGTCTAG 59.342 52.381 13.01 0.00 42.53 2.43
41 42 1.284657 CAGCATGCGTCAAGTCTAGG 58.715 55.000 13.01 0.00 0.00 3.02
42 43 0.176680 AGCATGCGTCAAGTCTAGGG 59.823 55.000 13.01 0.00 0.00 3.53
43 44 0.108138 GCATGCGTCAAGTCTAGGGT 60.108 55.000 0.00 0.00 0.00 4.34
44 45 1.136305 GCATGCGTCAAGTCTAGGGTA 59.864 52.381 0.00 0.00 0.00 3.69
67 68 5.856126 TCAAACAAACGACATAGCTAAGG 57.144 39.130 0.00 0.00 0.00 2.69
92 93 6.849085 TCAAACCTGCATTTACCATAACAT 57.151 33.333 0.00 0.00 0.00 2.71
99 100 7.559533 ACCTGCATTTACCATAACATATGTCAA 59.440 33.333 9.23 0.79 0.00 3.18
122 123 4.971282 AGAACTGACCATTGGGATAGATCA 59.029 41.667 7.78 0.00 38.05 2.92
219 220 8.549548 TGCATGTTGTATGAAAATTTGTCAAAG 58.450 29.630 4.03 0.00 0.00 2.77
227 228 9.914923 GTATGAAAATTTGTCAAAGAAACAACC 57.085 29.630 4.03 0.00 36.41 3.77
229 230 9.883142 ATGAAAATTTGTCAAAGAAACAACCTA 57.117 25.926 4.03 0.00 36.41 3.08
230 231 9.364989 TGAAAATTTGTCAAAGAAACAACCTAG 57.635 29.630 4.03 0.00 36.41 3.02
231 232 7.770801 AAATTTGTCAAAGAAACAACCTAGC 57.229 32.000 4.03 0.00 36.41 3.42
232 233 4.545823 TTGTCAAAGAAACAACCTAGCG 57.454 40.909 0.00 0.00 31.90 4.26
233 234 3.799366 TGTCAAAGAAACAACCTAGCGA 58.201 40.909 0.00 0.00 0.00 4.93
234 235 3.558418 TGTCAAAGAAACAACCTAGCGAC 59.442 43.478 0.00 0.00 0.00 5.19
235 236 3.059120 GTCAAAGAAACAACCTAGCGACC 60.059 47.826 0.00 0.00 0.00 4.79
236 237 2.180432 AAGAAACAACCTAGCGACCC 57.820 50.000 0.00 0.00 0.00 4.46
252 253 2.552031 GACCCAGCTAAGATTCGAACC 58.448 52.381 0.00 0.00 0.00 3.62
290 291 5.304101 ACAGTTGGCATGAATTGACCTTTTA 59.696 36.000 0.00 0.00 29.16 1.52
398 400 7.865820 AGAACTGATTCTTGGGATAGATCAAA 58.134 34.615 0.00 0.00 42.91 2.69
412 414 8.455682 GGGATAGATCAAACGTTTATGTGAAAA 58.544 33.333 14.20 0.00 0.00 2.29
413 415 9.834628 GGATAGATCAAACGTTTATGTGAAAAA 57.165 29.630 14.20 0.00 0.00 1.94
577 590 8.345869 CGAAATTCGAAACCTTGTTTAGGATCG 61.346 40.741 10.18 13.55 44.37 3.69
639 653 0.036952 CTTGCTGACGATCACCAGGT 60.037 55.000 11.79 0.00 0.00 4.00
645 659 1.063190 TGACGATCACCAGGTAGGGAT 60.063 52.381 0.00 0.00 43.89 3.85
646 660 1.341531 GACGATCACCAGGTAGGGATG 59.658 57.143 0.00 0.00 43.89 3.51
647 661 1.343075 ACGATCACCAGGTAGGGATGT 60.343 52.381 0.00 0.00 43.89 3.06
669 683 1.138266 CCAACGTATGATTCGTCCCCT 59.862 52.381 0.00 0.00 40.69 4.79
674 688 1.048601 TATGATTCGTCCCCTGGCTC 58.951 55.000 0.00 0.00 0.00 4.70
676 690 2.285368 ATTCGTCCCCTGGCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
677 691 1.910580 GATTCGTCCCCTGGCTCCAA 61.911 60.000 0.00 0.00 0.00 3.53
678 692 2.198304 ATTCGTCCCCTGGCTCCAAC 62.198 60.000 0.00 0.00 0.00 3.77
696 1648 3.205338 CAACATATCTGATGGACGCCAA 58.795 45.455 0.00 0.00 36.95 4.52
697 1649 2.838736 ACATATCTGATGGACGCCAAC 58.161 47.619 0.00 1.41 36.95 3.77
717 1669 8.779303 CGCCAACTAAAATTTCCCTTAAAATTT 58.221 29.630 0.00 2.38 45.90 1.82
829 1783 5.811399 TTTTCTGAGAAAAGTTTGAGCGA 57.189 34.783 15.81 0.00 0.00 4.93
830 1784 6.377327 TTTTCTGAGAAAAGTTTGAGCGAT 57.623 33.333 15.81 0.00 0.00 4.58
831 1785 7.490962 TTTTCTGAGAAAAGTTTGAGCGATA 57.509 32.000 15.81 0.00 0.00 2.92
832 1786 6.712241 TTCTGAGAAAAGTTTGAGCGATAG 57.288 37.500 0.00 0.00 0.00 2.08
833 1787 5.784177 TCTGAGAAAAGTTTGAGCGATAGT 58.216 37.500 0.00 0.00 39.35 2.12
834 1788 6.223852 TCTGAGAAAAGTTTGAGCGATAGTT 58.776 36.000 0.00 0.00 39.35 2.24
835 1789 6.706270 TCTGAGAAAAGTTTGAGCGATAGTTT 59.294 34.615 0.00 0.00 39.35 2.66
836 1790 7.226720 TCTGAGAAAAGTTTGAGCGATAGTTTT 59.773 33.333 0.00 0.00 39.35 2.43
837 1791 7.703328 TGAGAAAAGTTTGAGCGATAGTTTTT 58.297 30.769 0.00 0.00 39.35 1.94
954 1915 1.286305 ACCCACAACAACTGGACCCT 61.286 55.000 0.00 0.00 0.00 4.34
980 1941 1.153289 CCTCATCCAAGCCCAGACG 60.153 63.158 0.00 0.00 0.00 4.18
1076 2039 3.782443 CGCCGGGCTAGGGTTCTT 61.782 66.667 18.34 0.00 0.00 2.52
1146 2112 0.999406 CGCCACCGTAATTCTGACTG 59.001 55.000 0.00 0.00 0.00 3.51
1162 2128 3.031013 TGACTGGATTATCTCTTCCGCA 58.969 45.455 0.00 0.00 34.58 5.69
1176 2142 1.078426 CCGCAAGATTCCCCGTTCT 60.078 57.895 0.00 0.00 43.02 3.01
1259 2229 1.810030 GCGGCTCGTTTCTCGGATT 60.810 57.895 0.00 0.00 40.32 3.01
1263 2233 0.025128 GCTCGTTTCTCGGATTTCGC 59.975 55.000 0.00 0.00 40.32 4.70
1264 2234 1.346365 CTCGTTTCTCGGATTTCGCA 58.654 50.000 0.00 0.00 40.32 5.10
1267 2237 1.331161 CGTTTCTCGGATTTCGCATCG 60.331 52.381 0.00 0.00 39.05 3.84
1269 2239 1.277326 TTCTCGGATTTCGCATCGTG 58.723 50.000 0.00 0.00 39.05 4.35
1270 2240 1.145759 TCTCGGATTTCGCATCGTGC 61.146 55.000 0.58 0.58 40.69 5.34
1455 2425 4.043561 TGGTAGCCTTTTGATAGGTTTGGA 59.956 41.667 0.00 0.00 37.63 3.53
1484 2454 3.453559 GCTTGCTAGGGTTTAGCGA 57.546 52.632 0.00 0.00 43.13 4.93
1500 2470 1.495951 CGAACTACGGCTTTGGTGC 59.504 57.895 0.00 0.00 38.46 5.01
1514 2484 0.388659 TGGTGCTGTTTGATTGGTGC 59.611 50.000 0.00 0.00 0.00 5.01
1567 2544 0.595053 ATTCTCGTCGTGCTATGCCG 60.595 55.000 0.00 0.00 0.00 5.69
1572 2549 1.355796 CGTCGTGCTATGCCGGAAAA 61.356 55.000 5.05 0.00 0.00 2.29
1628 2605 9.071276 GGGAAGCATAATTTGATCTTCAATAGA 57.929 33.333 0.00 0.00 36.11 1.98
1701 2678 5.951747 AGGGCAAATCTAGCTTATTTTGACA 59.048 36.000 17.42 0.00 38.55 3.58
1746 2723 6.595772 AGAAATTGCATAGAAGCGTCTTAG 57.404 37.500 7.67 2.09 37.31 2.18
1851 2828 5.503927 CATGCCCCTGTTAATCTGCTATAT 58.496 41.667 0.00 0.00 0.00 0.86
1869 2846 0.748005 ATGCCGGTCTTGGTGCATAC 60.748 55.000 1.90 0.00 42.30 2.39
1924 2904 5.810587 GCTCAATCTTCTATTGTTCCACGTA 59.189 40.000 0.00 0.00 0.00 3.57
1925 2905 6.480320 GCTCAATCTTCTATTGTTCCACGTAT 59.520 38.462 0.00 0.00 0.00 3.06
1972 2953 2.649331 GCTGTTGCAAAGCATGAGAT 57.351 45.000 21.23 0.00 38.76 2.75
1986 2967 9.053840 CAAAGCATGAGATCACATTCTAGTATT 57.946 33.333 5.79 0.00 0.00 1.89
2021 3002 5.302360 TGTGTTATCTATTATGTTCCGCCC 58.698 41.667 0.00 0.00 0.00 6.13
2233 3214 1.929836 CAGTTGAAGATGCCTCGCTAC 59.070 52.381 0.00 0.00 0.00 3.58
2275 3256 4.863391 CGATGACCGTTATGATCGTTAC 57.137 45.455 0.00 0.00 0.00 2.50
2591 3573 1.207329 AGAACTCCGCCTATGTTGTCC 59.793 52.381 0.00 0.00 0.00 4.02
2639 3665 2.114616 ACTCAGCCACTCTTATGGAGG 58.885 52.381 0.00 0.00 45.83 4.30
2873 3943 7.286087 TCGGTAGAGGTGTCATTTTAGCTATTA 59.714 37.037 0.00 0.00 0.00 0.98
2949 4019 2.814336 AGCAAGCTTCGGAAGTTTAAGG 59.186 45.455 17.66 8.65 30.35 2.69
3005 4075 5.188948 TGACCATTTACATAGTGCTACTGGT 59.811 40.000 0.00 0.00 37.19 4.00
3067 4137 6.942005 TCCAGCTTTGACTTGAATAATCTTGA 59.058 34.615 0.00 0.00 0.00 3.02
3141 4211 2.288395 GGTGGAAATTGGTGTCTTGCTG 60.288 50.000 0.00 0.00 0.00 4.41
3234 4304 0.961857 TGTGATGGCTGGTGATGCAC 60.962 55.000 0.00 0.00 0.00 4.57
3366 4436 4.275936 CCGTGATTTCCATGTTCTATTCCC 59.724 45.833 0.00 0.00 0.00 3.97
3375 4445 5.309543 TCCATGTTCTATTCCCGGAATATGT 59.690 40.000 18.41 0.00 38.49 2.29
3523 4593 1.134280 CAAGAGATTGATGGGAGCCGT 60.134 52.381 0.00 0.00 0.00 5.68
3621 4691 3.282021 TGCCATCTACAAATGAGCCTTC 58.718 45.455 0.00 0.00 0.00 3.46
3645 4715 6.325028 TCGATGGACTGAAAATTCTCCTCTAT 59.675 38.462 3.88 0.00 0.00 1.98
3648 4718 4.509600 GGACTGAAAATTCTCCTCTATGCG 59.490 45.833 0.00 0.00 0.00 4.73
3651 4721 4.260985 TGAAAATTCTCCTCTATGCGCAA 58.739 39.130 17.11 2.72 0.00 4.85
3769 4839 4.597004 TCTAATCTTCACTACCGTCACCT 58.403 43.478 0.00 0.00 0.00 4.00
3806 4876 3.006940 TCAACCTATTCAACGATGGTGC 58.993 45.455 0.00 0.00 0.00 5.01
4005 5075 6.480524 TGATGAACCTTGTTAAGATTCGTG 57.519 37.500 0.00 0.00 0.00 4.35
4134 5204 8.821686 ATGTGACCAGTTAATGATATTCCAAA 57.178 30.769 0.00 0.00 0.00 3.28
4229 5299 4.059304 ATGGGGTTCATGGCGGCA 62.059 61.111 16.34 16.34 34.22 5.69
4257 5327 3.589988 CCGTACTTAGCCATCCATGATC 58.410 50.000 0.00 0.00 0.00 2.92
4322 5394 1.529865 GACCGTAGTTGAAACAGGTGC 59.470 52.381 11.10 0.00 34.96 5.01
4394 5466 0.550914 GGACCTGATGCACCCCAATA 59.449 55.000 0.00 0.00 0.00 1.90
4403 5475 4.160065 TGATGCACCCCAATATTTTGTCAG 59.840 41.667 0.00 0.00 0.00 3.51
4407 5479 4.929211 GCACCCCAATATTTTGTCAGAAAC 59.071 41.667 0.00 0.00 0.00 2.78
4546 5717 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4556 5727 1.101635 CATGTGCCAGAGCCATGAGG 61.102 60.000 0.00 0.00 44.14 3.86
4625 5796 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
4626 5797 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
4627 5798 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
4628 5799 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
4630 5801 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
4632 5803 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
4633 5804 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
4634 5805 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4635 5806 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4636 5807 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
4637 5808 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
4639 5810 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
4652 5823 0.108585 GTTGTTGCCTCTCTCCCACA 59.891 55.000 0.00 0.00 0.00 4.17
4693 5877 3.974871 TCATGCATGTTCAATGGATCG 57.025 42.857 25.43 0.00 0.00 3.69
4774 5959 8.520351 GTTAATTAATTCTAGTTGGCCAACAGT 58.480 33.333 41.88 28.54 43.47 3.55
4844 6029 5.194537 ACCCACTAATTCCTCCATGAATCTT 59.805 40.000 0.00 0.00 33.91 2.40
4947 6138 9.421806 ACATTTATAAATTGGTGACATTGTGTG 57.578 29.630 8.01 0.00 42.32 3.82
5030 6382 0.454600 TAGGTCAGTTGGATCGACGC 59.545 55.000 0.00 0.00 0.00 5.19
5064 6416 1.834263 GGCAGGTAGTGAGTTGGATCT 59.166 52.381 0.00 0.00 0.00 2.75
5067 6419 3.196685 GCAGGTAGTGAGTTGGATCTCTT 59.803 47.826 0.00 0.00 35.68 2.85
5241 6767 5.607939 ACACATGACGGACCAAGAATATA 57.392 39.130 0.00 0.00 0.00 0.86
5402 7497 4.523173 TGTCCTCGACTTCAGTTGATAAGT 59.477 41.667 0.00 0.00 37.77 2.24
5630 7725 6.749923 AGAATCTCAAGTATTTCCTTGCAC 57.250 37.500 0.00 0.00 41.29 4.57
5664 7760 5.010012 AGCTTCCTTGTGATGTTACCTTTTG 59.990 40.000 0.00 0.00 0.00 2.44
5959 8059 9.888878 CTACTATAGATTTGGTCAAATGCAATG 57.111 33.333 12.94 0.00 40.77 2.82
6164 8264 3.560902 TTGTTGAGTCTGTAGAGAGCG 57.439 47.619 0.00 0.00 0.00 5.03
6183 8283 2.548067 GCGGGTATCTGGTGATAAGTGG 60.548 54.545 0.00 0.00 36.97 4.00
6186 8286 3.181454 GGGTATCTGGTGATAAGTGGGTG 60.181 52.174 0.00 0.00 36.97 4.61
6221 8321 4.039609 TGGATGCTACTGATATGTGAGTGG 59.960 45.833 0.00 0.00 0.00 4.00
6291 8391 2.749621 GTGGTGGCATAGTTCAAAGAGG 59.250 50.000 0.00 0.00 0.00 3.69
6318 8419 5.483811 TCTCGGCAACTTTGTATAACATGA 58.516 37.500 0.00 0.00 0.00 3.07
6324 8425 5.677091 GCAACTTTGTATAACATGAGCCTGG 60.677 44.000 0.00 0.00 0.00 4.45
6607 8708 2.753029 GGCAACAGCCTGAGTCCT 59.247 61.111 0.00 0.00 45.21 3.85
6648 8776 0.950555 GAGTGATGGTGAACGCTGCA 60.951 55.000 0.00 0.00 0.00 4.41
6673 8801 5.016831 ACCACCCTCAACTTGAATTAATCC 58.983 41.667 0.00 0.00 0.00 3.01
6708 8836 2.871096 TGGGCCGAACTCTTATGTTT 57.129 45.000 0.00 0.00 0.00 2.83
6818 8946 7.895975 TTTTCATGTTTGACAAATGTTGACA 57.104 28.000 3.49 0.00 33.73 3.58
6842 8970 2.017049 GTTATGCCGCCTTGTCTGAAT 58.983 47.619 0.00 0.00 0.00 2.57
6904 9032 3.354948 TGGCTAGCATGATCAGTGTTT 57.645 42.857 18.24 0.00 0.00 2.83
6905 9033 3.273434 TGGCTAGCATGATCAGTGTTTC 58.727 45.455 18.24 0.00 0.00 2.78
6970 9098 3.521126 ACTACTGTTCTACTCCCTCCGTA 59.479 47.826 0.00 0.00 0.00 4.02
6971 9099 3.002038 ACTGTTCTACTCCCTCCGTAG 57.998 52.381 0.00 0.00 36.53 3.51
6989 9119 3.930848 CGTAGGGAAATGTAAGAGCGTTT 59.069 43.478 0.00 0.00 0.00 3.60
6990 9120 5.104374 CGTAGGGAAATGTAAGAGCGTTTA 58.896 41.667 0.00 0.00 0.00 2.01
6991 9121 5.005107 CGTAGGGAAATGTAAGAGCGTTTAC 59.995 44.000 6.48 6.48 34.78 2.01
7000 9130 6.263516 TGTAAGAGCGTTTACATCACTACT 57.736 37.500 10.73 0.00 38.31 2.57
7002 9132 7.149973 TGTAAGAGCGTTTACATCACTACTTT 58.850 34.615 10.73 0.00 38.31 2.66
7003 9133 8.298854 TGTAAGAGCGTTTACATCACTACTTTA 58.701 33.333 10.73 0.00 38.31 1.85
7005 9135 6.331061 AGAGCGTTTACATCACTACTTTAGG 58.669 40.000 0.00 0.00 0.00 2.69
7007 9137 4.033702 GCGTTTACATCACTACTTTAGGCC 59.966 45.833 0.00 0.00 0.00 5.19
7008 9138 4.569564 CGTTTACATCACTACTTTAGGCCC 59.430 45.833 0.00 0.00 0.00 5.80
7009 9139 5.626116 CGTTTACATCACTACTTTAGGCCCT 60.626 44.000 0.00 0.00 0.00 5.19
7010 9140 3.914426 ACATCACTACTTTAGGCCCTG 57.086 47.619 0.00 0.00 0.00 4.45
7011 9141 3.182152 ACATCACTACTTTAGGCCCTGT 58.818 45.455 0.00 0.00 0.00 4.00
7012 9142 3.587506 ACATCACTACTTTAGGCCCTGTT 59.412 43.478 0.00 0.00 0.00 3.16
7013 9143 4.042934 ACATCACTACTTTAGGCCCTGTTT 59.957 41.667 0.00 0.00 0.00 2.83
7014 9144 4.015872 TCACTACTTTAGGCCCTGTTTG 57.984 45.455 0.00 0.00 0.00 2.93
7015 9145 3.081804 CACTACTTTAGGCCCTGTTTGG 58.918 50.000 0.00 0.00 0.00 3.28
7027 9157 3.261981 CCTGTTTGGGAATACTAGCGT 57.738 47.619 0.00 0.00 0.00 5.07
7028 9158 3.606687 CCTGTTTGGGAATACTAGCGTT 58.393 45.455 0.00 0.00 0.00 4.84
7029 9159 4.007659 CCTGTTTGGGAATACTAGCGTTT 58.992 43.478 0.00 0.00 0.00 3.60
7030 9160 5.180271 CCTGTTTGGGAATACTAGCGTTTA 58.820 41.667 0.00 0.00 0.00 2.01
7031 9161 5.064325 CCTGTTTGGGAATACTAGCGTTTAC 59.936 44.000 0.00 0.00 0.00 2.01
7032 9162 5.549347 TGTTTGGGAATACTAGCGTTTACA 58.451 37.500 0.00 0.00 0.00 2.41
7033 9163 6.174760 TGTTTGGGAATACTAGCGTTTACAT 58.825 36.000 0.00 0.00 0.00 2.29
7034 9164 6.314400 TGTTTGGGAATACTAGCGTTTACATC 59.686 38.462 0.00 0.00 0.00 3.06
7035 9165 5.601583 TGGGAATACTAGCGTTTACATCA 57.398 39.130 0.00 0.00 0.00 3.07
7036 9166 5.353938 TGGGAATACTAGCGTTTACATCAC 58.646 41.667 0.00 0.00 0.00 3.06
7037 9167 5.128171 TGGGAATACTAGCGTTTACATCACT 59.872 40.000 0.00 0.00 0.00 3.41
7038 9168 6.321945 TGGGAATACTAGCGTTTACATCACTA 59.678 38.462 0.00 0.00 0.00 2.74
7039 9169 6.640092 GGGAATACTAGCGTTTACATCACTAC 59.360 42.308 0.00 0.00 0.00 2.73
7040 9170 7.424001 GGAATACTAGCGTTTACATCACTACT 58.576 38.462 0.00 0.00 0.00 2.57
7041 9171 7.919621 GGAATACTAGCGTTTACATCACTACTT 59.080 37.037 0.00 0.00 0.00 2.24
7042 9172 9.298774 GAATACTAGCGTTTACATCACTACTTT 57.701 33.333 0.00 0.00 0.00 2.66
7044 9174 9.947669 ATACTAGCGTTTACATCACTACTTTAG 57.052 33.333 0.00 0.00 0.00 1.85
7045 9175 7.256286 ACTAGCGTTTACATCACTACTTTAGG 58.744 38.462 0.00 0.00 0.00 2.69
7046 9176 4.868734 AGCGTTTACATCACTACTTTAGGC 59.131 41.667 0.00 0.00 0.00 3.93
7047 9177 4.033702 GCGTTTACATCACTACTTTAGGCC 59.966 45.833 0.00 0.00 0.00 5.19
7048 9178 4.569564 CGTTTACATCACTACTTTAGGCCC 59.430 45.833 0.00 0.00 0.00 5.80
7049 9179 5.626116 CGTTTACATCACTACTTTAGGCCCT 60.626 44.000 0.00 0.00 0.00 5.19
7050 9180 3.914426 ACATCACTACTTTAGGCCCTG 57.086 47.619 0.00 0.00 0.00 4.45
7051 9181 3.182152 ACATCACTACTTTAGGCCCTGT 58.818 45.455 0.00 0.00 0.00 4.00
7052 9182 3.587506 ACATCACTACTTTAGGCCCTGTT 59.412 43.478 0.00 0.00 0.00 3.16
7053 9183 4.042934 ACATCACTACTTTAGGCCCTGTTT 59.957 41.667 0.00 0.00 0.00 2.83
7054 9184 4.015872 TCACTACTTTAGGCCCTGTTTG 57.984 45.455 0.00 0.00 0.00 2.93
7055 9185 3.081804 CACTACTTTAGGCCCTGTTTGG 58.918 50.000 0.00 0.00 0.00 3.28
7067 9197 3.356529 CCTGTTTGGGAATACTCTGCT 57.643 47.619 0.00 0.00 0.00 4.24
7068 9198 3.274288 CCTGTTTGGGAATACTCTGCTC 58.726 50.000 0.00 0.00 0.00 4.26
7069 9199 3.274288 CTGTTTGGGAATACTCTGCTCC 58.726 50.000 0.00 0.00 0.00 4.70
7070 9200 2.280628 GTTTGGGAATACTCTGCTCCG 58.719 52.381 0.00 0.00 0.00 4.63
7071 9201 0.830648 TTGGGAATACTCTGCTCCGG 59.169 55.000 0.00 0.00 0.00 5.14
7072 9202 1.048724 TGGGAATACTCTGCTCCGGG 61.049 60.000 0.00 0.00 0.00 5.73
7073 9203 0.759436 GGGAATACTCTGCTCCGGGA 60.759 60.000 0.00 0.00 0.00 5.14
7074 9204 0.676736 GGAATACTCTGCTCCGGGAG 59.323 60.000 19.95 19.95 35.86 4.30
7100 9230 2.272797 AGCGGACGGAGCTCTAGT 59.727 61.111 14.64 14.08 41.83 2.57
7101 9231 1.525923 AGCGGACGGAGCTCTAGTA 59.474 57.895 14.64 0.00 41.83 1.82
7102 9232 0.814812 AGCGGACGGAGCTCTAGTAC 60.815 60.000 14.64 13.65 41.83 2.73
7103 9233 1.094073 GCGGACGGAGCTCTAGTACA 61.094 60.000 14.64 0.00 0.00 2.90
7104 9234 1.376543 CGGACGGAGCTCTAGTACAA 58.623 55.000 14.64 0.00 0.00 2.41
7105 9235 1.741706 CGGACGGAGCTCTAGTACAAA 59.258 52.381 14.64 0.00 0.00 2.83
7106 9236 2.163010 CGGACGGAGCTCTAGTACAAAA 59.837 50.000 14.64 0.00 0.00 2.44
7107 9237 3.181489 CGGACGGAGCTCTAGTACAAAAT 60.181 47.826 14.64 0.00 0.00 1.82
7108 9238 4.361420 GGACGGAGCTCTAGTACAAAATC 58.639 47.826 14.64 1.05 0.00 2.17
7109 9239 4.098196 GGACGGAGCTCTAGTACAAAATCT 59.902 45.833 14.64 0.00 0.00 2.40
7110 9240 5.298777 GGACGGAGCTCTAGTACAAAATCTA 59.701 44.000 14.64 0.00 0.00 1.98
7111 9241 6.380095 ACGGAGCTCTAGTACAAAATCTAG 57.620 41.667 14.64 0.00 36.10 2.43
7112 9242 5.299782 ACGGAGCTCTAGTACAAAATCTAGG 59.700 44.000 14.64 0.00 35.65 3.02
7113 9243 5.531659 CGGAGCTCTAGTACAAAATCTAGGA 59.468 44.000 14.64 0.00 35.65 2.94
7114 9244 6.293735 CGGAGCTCTAGTACAAAATCTAGGAG 60.294 46.154 14.64 0.00 35.65 3.69
7115 9245 6.399639 AGCTCTAGTACAAAATCTAGGAGC 57.600 41.667 0.00 0.00 37.50 4.70
7116 9246 5.009210 AGCTCTAGTACAAAATCTAGGAGCG 59.991 44.000 0.00 0.00 39.44 5.03
7117 9247 5.008811 GCTCTAGTACAAAATCTAGGAGCGA 59.991 44.000 0.00 0.00 35.65 4.93
7118 9248 6.621316 TCTAGTACAAAATCTAGGAGCGAG 57.379 41.667 0.00 0.00 35.65 5.03
7119 9249 4.048241 AGTACAAAATCTAGGAGCGAGC 57.952 45.455 0.00 0.00 0.00 5.03
7120 9250 3.447586 AGTACAAAATCTAGGAGCGAGCA 59.552 43.478 0.00 0.00 0.00 4.26
7121 9251 3.334583 ACAAAATCTAGGAGCGAGCAA 57.665 42.857 0.00 0.00 0.00 3.91
7122 9252 3.674997 ACAAAATCTAGGAGCGAGCAAA 58.325 40.909 0.00 0.00 0.00 3.68
7123 9253 3.437049 ACAAAATCTAGGAGCGAGCAAAC 59.563 43.478 0.00 0.00 0.00 2.93
7124 9254 2.317530 AATCTAGGAGCGAGCAAACC 57.682 50.000 0.00 0.00 0.00 3.27
7125 9255 0.103208 ATCTAGGAGCGAGCAAACCG 59.897 55.000 0.00 0.00 0.00 4.44
7141 9271 4.228097 CGCCGCTCCGCAAATCTG 62.228 66.667 0.00 0.00 0.00 2.90
7142 9272 4.543084 GCCGCTCCGCAAATCTGC 62.543 66.667 0.00 0.00 45.75 4.26
7160 9290 2.772739 CGGAGCTGGTGAATTCCTG 58.227 57.895 2.27 0.00 0.00 3.86
7161 9291 0.250234 CGGAGCTGGTGAATTCCTGA 59.750 55.000 2.27 0.00 0.00 3.86
7162 9292 1.339055 CGGAGCTGGTGAATTCCTGAA 60.339 52.381 2.27 0.00 0.00 3.02
7163 9293 2.087646 GGAGCTGGTGAATTCCTGAAC 58.912 52.381 2.27 0.00 0.00 3.18
7164 9294 1.734465 GAGCTGGTGAATTCCTGAACG 59.266 52.381 2.27 0.00 0.00 3.95
7165 9295 0.169009 GCTGGTGAATTCCTGAACGC 59.831 55.000 2.27 0.00 0.00 4.84
7166 9296 0.443869 CTGGTGAATTCCTGAACGCG 59.556 55.000 3.53 3.53 0.00 6.01
7167 9297 0.953471 TGGTGAATTCCTGAACGCGG 60.953 55.000 12.47 0.00 0.00 6.46
7168 9298 1.644786 GGTGAATTCCTGAACGCGGG 61.645 60.000 12.47 0.89 42.30 6.13
7169 9299 2.038269 TGAATTCCTGAACGCGGGC 61.038 57.895 12.47 1.50 40.61 6.13
7170 9300 1.745489 GAATTCCTGAACGCGGGCT 60.745 57.895 12.47 0.00 40.61 5.19
7171 9301 1.303317 AATTCCTGAACGCGGGCTT 60.303 52.632 12.47 0.00 40.61 4.35
7172 9302 1.586154 AATTCCTGAACGCGGGCTTG 61.586 55.000 12.47 0.00 40.61 4.01
7173 9303 4.697756 TCCTGAACGCGGGCTTGG 62.698 66.667 12.47 6.06 40.61 3.61
7175 9305 3.726517 CTGAACGCGGGCTTGGTG 61.727 66.667 12.47 0.00 0.00 4.17
7176 9306 4.243008 TGAACGCGGGCTTGGTGA 62.243 61.111 12.47 0.00 0.00 4.02
7177 9307 2.746277 GAACGCGGGCTTGGTGAT 60.746 61.111 12.47 0.00 0.00 3.06
7178 9308 2.746277 AACGCGGGCTTGGTGATC 60.746 61.111 12.47 0.00 0.00 2.92
7179 9309 3.254024 AACGCGGGCTTGGTGATCT 62.254 57.895 12.47 0.00 0.00 2.75
7180 9310 1.895020 AACGCGGGCTTGGTGATCTA 61.895 55.000 12.47 0.00 0.00 1.98
7181 9311 1.069765 CGCGGGCTTGGTGATCTAT 59.930 57.895 0.00 0.00 0.00 1.98
7182 9312 0.317160 CGCGGGCTTGGTGATCTATA 59.683 55.000 0.00 0.00 0.00 1.31
7183 9313 1.270094 CGCGGGCTTGGTGATCTATAA 60.270 52.381 0.00 0.00 0.00 0.98
7184 9314 2.805295 CGCGGGCTTGGTGATCTATAAA 60.805 50.000 0.00 0.00 0.00 1.40
7185 9315 2.548480 GCGGGCTTGGTGATCTATAAAC 59.452 50.000 0.00 0.00 0.00 2.01
7186 9316 3.804036 CGGGCTTGGTGATCTATAAACA 58.196 45.455 0.00 0.00 0.00 2.83
7187 9317 3.560068 CGGGCTTGGTGATCTATAAACAC 59.440 47.826 0.00 0.00 0.00 3.32
7188 9318 4.683400 CGGGCTTGGTGATCTATAAACACT 60.683 45.833 0.00 0.00 35.28 3.55
7189 9319 4.816925 GGGCTTGGTGATCTATAAACACTC 59.183 45.833 0.00 0.00 35.28 3.51
7190 9320 5.396884 GGGCTTGGTGATCTATAAACACTCT 60.397 44.000 0.00 0.00 35.28 3.24
7191 9321 6.116126 GGCTTGGTGATCTATAAACACTCTT 58.884 40.000 0.00 0.00 35.28 2.85
7192 9322 7.272978 GGCTTGGTGATCTATAAACACTCTTA 58.727 38.462 0.00 0.00 35.28 2.10
7193 9323 7.934120 GGCTTGGTGATCTATAAACACTCTTAT 59.066 37.037 0.00 0.00 35.28 1.73
7194 9324 9.982651 GCTTGGTGATCTATAAACACTCTTATA 57.017 33.333 0.00 0.00 35.28 0.98
7230 9360 4.501071 GAGTACCTTTTAGGCATCGTGAA 58.499 43.478 0.00 0.00 39.63 3.18
7258 9388 1.334243 GAATCAGGATCAGCAAGCTGC 59.666 52.381 16.89 4.30 45.46 5.25
7269 9399 0.100146 GCAAGCTGCTTATGGTCTGC 59.900 55.000 15.51 9.52 40.96 4.26
7270 9400 1.456296 CAAGCTGCTTATGGTCTGCA 58.544 50.000 15.51 0.00 35.30 4.41
7282 9412 1.064758 TGGTCTGCAAAGTGTTCCTGT 60.065 47.619 0.00 0.00 0.00 4.00
7285 9415 3.202906 GTCTGCAAAGTGTTCCTGTACA 58.797 45.455 0.00 0.00 0.00 2.90
7299 9442 7.920682 GTGTTCCTGTACAAATTTTCTGTCAAT 59.079 33.333 0.00 0.00 0.00 2.57
7302 9445 9.883142 TTCCTGTACAAATTTTCTGTCAATTTT 57.117 25.926 0.00 0.00 32.57 1.82
7326 9469 6.825610 TGTAAGGAATTGTTTTTGGCTGAAT 58.174 32.000 0.00 0.00 0.00 2.57
7328 9471 8.592809 TGTAAGGAATTGTTTTTGGCTGAATAT 58.407 29.630 0.00 0.00 0.00 1.28
7399 9542 6.238320 GCTGACAAACATCTAACAGATCATCC 60.238 42.308 0.00 0.00 31.32 3.51
7459 9610 3.831333 TGAATGCAATTAAGGGCTTGTCA 59.169 39.130 0.00 1.93 36.07 3.58
7461 9612 1.545582 TGCAATTAAGGGCTTGTCAGC 59.454 47.619 3.22 0.00 46.52 4.26
7631 9782 4.981054 CGACATCTGAGAGTAATCCATGTG 59.019 45.833 0.00 0.00 0.00 3.21
7651 9811 4.314440 TGCGGCCTTCGTCTGCTT 62.314 61.111 0.00 0.00 41.72 3.91
7652 9812 3.491652 GCGGCCTTCGTCTGCTTC 61.492 66.667 0.00 0.00 41.72 3.86
7653 9813 3.181967 CGGCCTTCGTCTGCTTCG 61.182 66.667 0.00 0.00 0.00 3.79
7673 9833 0.681887 TCTGCGGTACCGATCTCCAA 60.682 55.000 37.62 11.73 42.83 3.53
7800 9960 1.371467 TCCACAGGACATCACCCATT 58.629 50.000 0.00 0.00 0.00 3.16
7812 9972 2.994699 CCCATTGTAGGGCGGTCA 59.005 61.111 0.00 0.00 43.10 4.02
7825 9985 1.446445 CGGTCAACGCCGTAATCCA 60.446 57.895 0.00 0.00 46.11 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.943690 TGTAGAGAGCTATGTCGACCAC 59.056 50.000 14.12 0.00 0.00 4.16
1 2 2.943690 GTGTAGAGAGCTATGTCGACCA 59.056 50.000 14.12 1.26 0.00 4.02
2 3 2.943690 TGTGTAGAGAGCTATGTCGACC 59.056 50.000 14.12 0.00 0.00 4.79
3 4 3.547214 GCTGTGTAGAGAGCTATGTCGAC 60.547 52.174 9.11 9.11 35.56 4.20
4 5 2.614520 GCTGTGTAGAGAGCTATGTCGA 59.385 50.000 1.25 0.00 35.56 4.20
5 6 2.356069 TGCTGTGTAGAGAGCTATGTCG 59.644 50.000 10.49 0.00 39.29 4.35
6 7 4.297510 CATGCTGTGTAGAGAGCTATGTC 58.702 47.826 10.49 0.00 39.29 3.06
7 8 3.492309 GCATGCTGTGTAGAGAGCTATGT 60.492 47.826 11.37 0.00 39.29 2.29
8 9 3.058450 GCATGCTGTGTAGAGAGCTATG 58.942 50.000 11.37 12.15 39.29 2.23
9 10 2.288091 CGCATGCTGTGTAGAGAGCTAT 60.288 50.000 17.13 0.09 39.29 2.97
10 11 1.066152 CGCATGCTGTGTAGAGAGCTA 59.934 52.381 17.13 0.00 39.29 3.32
11 12 0.179116 CGCATGCTGTGTAGAGAGCT 60.179 55.000 17.13 0.00 39.29 4.09
12 13 0.459237 ACGCATGCTGTGTAGAGAGC 60.459 55.000 17.13 1.53 39.63 4.09
13 14 1.135286 TGACGCATGCTGTGTAGAGAG 60.135 52.381 17.13 0.00 41.77 3.20
14 15 0.887933 TGACGCATGCTGTGTAGAGA 59.112 50.000 17.13 0.00 41.77 3.10
15 16 1.657594 CTTGACGCATGCTGTGTAGAG 59.342 52.381 17.13 4.34 41.77 2.43
16 17 1.000843 ACTTGACGCATGCTGTGTAGA 59.999 47.619 17.13 0.00 41.77 2.59
17 18 1.391485 GACTTGACGCATGCTGTGTAG 59.609 52.381 17.13 14.90 41.77 2.74
18 19 1.000843 AGACTTGACGCATGCTGTGTA 59.999 47.619 17.13 4.43 41.77 2.90
19 20 0.250038 AGACTTGACGCATGCTGTGT 60.250 50.000 17.13 6.24 44.78 3.72
20 21 1.657594 CTAGACTTGACGCATGCTGTG 59.342 52.381 17.13 2.44 0.00 3.66
21 22 1.404717 CCTAGACTTGACGCATGCTGT 60.405 52.381 17.13 15.17 0.00 4.40
22 23 1.284657 CCTAGACTTGACGCATGCTG 58.715 55.000 17.13 11.87 0.00 4.41
23 24 0.176680 CCCTAGACTTGACGCATGCT 59.823 55.000 17.13 2.38 0.00 3.79
24 25 0.108138 ACCCTAGACTTGACGCATGC 60.108 55.000 7.91 7.91 0.00 4.06
25 26 3.068165 TGATACCCTAGACTTGACGCATG 59.932 47.826 0.00 0.00 0.00 4.06
26 27 3.296854 TGATACCCTAGACTTGACGCAT 58.703 45.455 0.00 0.00 0.00 4.73
27 28 2.730382 TGATACCCTAGACTTGACGCA 58.270 47.619 0.00 0.00 0.00 5.24
28 29 3.795623 TTGATACCCTAGACTTGACGC 57.204 47.619 0.00 0.00 0.00 5.19
29 30 5.068234 TGTTTGATACCCTAGACTTGACG 57.932 43.478 0.00 0.00 0.00 4.35
30 31 6.128634 CGTTTGTTTGATACCCTAGACTTGAC 60.129 42.308 0.00 0.00 0.00 3.18
31 32 5.929992 CGTTTGTTTGATACCCTAGACTTGA 59.070 40.000 0.00 0.00 0.00 3.02
32 33 5.929992 TCGTTTGTTTGATACCCTAGACTTG 59.070 40.000 0.00 0.00 0.00 3.16
33 34 5.930569 GTCGTTTGTTTGATACCCTAGACTT 59.069 40.000 0.00 0.00 0.00 3.01
34 35 5.011329 TGTCGTTTGTTTGATACCCTAGACT 59.989 40.000 0.00 0.00 0.00 3.24
35 36 5.232463 TGTCGTTTGTTTGATACCCTAGAC 58.768 41.667 0.00 0.00 0.00 2.59
36 37 5.471556 TGTCGTTTGTTTGATACCCTAGA 57.528 39.130 0.00 0.00 0.00 2.43
37 38 6.018994 GCTATGTCGTTTGTTTGATACCCTAG 60.019 42.308 0.00 0.00 0.00 3.02
38 39 5.813672 GCTATGTCGTTTGTTTGATACCCTA 59.186 40.000 0.00 0.00 0.00 3.53
39 40 4.634443 GCTATGTCGTTTGTTTGATACCCT 59.366 41.667 0.00 0.00 0.00 4.34
40 41 4.634443 AGCTATGTCGTTTGTTTGATACCC 59.366 41.667 0.00 0.00 0.00 3.69
41 42 5.796350 AGCTATGTCGTTTGTTTGATACC 57.204 39.130 0.00 0.00 0.00 2.73
42 43 7.064253 ACCTTAGCTATGTCGTTTGTTTGATAC 59.936 37.037 0.00 0.00 0.00 2.24
43 44 7.101054 ACCTTAGCTATGTCGTTTGTTTGATA 58.899 34.615 0.00 0.00 0.00 2.15
44 45 5.938125 ACCTTAGCTATGTCGTTTGTTTGAT 59.062 36.000 0.00 0.00 0.00 2.57
67 68 6.451393 TGTTATGGTAAATGCAGGTTTGAAC 58.549 36.000 0.00 0.00 0.00 3.18
99 100 4.971282 TGATCTATCCCAATGGTCAGTTCT 59.029 41.667 0.00 0.00 0.00 3.01
122 123 7.551262 TGTGGCTATAGTTTCACATAAACGATT 59.449 33.333 16.22 0.00 35.52 3.34
205 206 8.328146 GCTAGGTTGTTTCTTTGACAAATTTTC 58.672 33.333 0.05 0.00 38.60 2.29
208 209 5.977129 CGCTAGGTTGTTTCTTTGACAAATT 59.023 36.000 0.05 0.00 38.60 1.82
209 210 5.298276 TCGCTAGGTTGTTTCTTTGACAAAT 59.702 36.000 0.05 0.00 38.60 2.32
219 220 1.439679 CTGGGTCGCTAGGTTGTTTC 58.560 55.000 0.00 0.00 0.00 2.78
224 225 0.824759 CTTAGCTGGGTCGCTAGGTT 59.175 55.000 0.00 0.00 42.85 3.50
227 228 2.605823 CGAATCTTAGCTGGGTCGCTAG 60.606 54.545 0.00 0.00 42.85 3.42
229 230 0.103208 CGAATCTTAGCTGGGTCGCT 59.897 55.000 0.00 0.00 43.83 4.93
230 231 0.102481 TCGAATCTTAGCTGGGTCGC 59.898 55.000 0.00 0.00 0.00 5.19
231 232 2.194271 GTTCGAATCTTAGCTGGGTCG 58.806 52.381 0.00 0.00 0.00 4.79
232 233 2.168728 AGGTTCGAATCTTAGCTGGGTC 59.831 50.000 4.73 0.00 0.00 4.46
233 234 2.093447 CAGGTTCGAATCTTAGCTGGGT 60.093 50.000 8.58 0.00 34.62 4.51
234 235 2.555199 CAGGTTCGAATCTTAGCTGGG 58.445 52.381 8.58 0.00 34.62 4.45
236 237 2.093447 ACCCAGGTTCGAATCTTAGCTG 60.093 50.000 8.58 7.24 37.20 4.24
268 269 4.961438 AAAAGGTCAATTCATGCCAACT 57.039 36.364 0.00 0.00 0.00 3.16
270 271 6.418057 AACTAAAAGGTCAATTCATGCCAA 57.582 33.333 0.00 0.00 0.00 4.52
290 291 9.383519 ACATTCACATAAACGATTGATCTAACT 57.616 29.630 0.00 0.00 0.00 2.24
373 375 7.443302 TTGATCTATCCCAAGAATCAGTTCT 57.557 36.000 0.00 0.00 46.50 3.01
381 383 7.827236 ACATAAACGTTTGATCTATCCCAAGAA 59.173 33.333 23.46 0.00 0.00 2.52
382 384 7.279981 CACATAAACGTTTGATCTATCCCAAGA 59.720 37.037 23.46 0.00 0.00 3.02
383 385 7.279981 TCACATAAACGTTTGATCTATCCCAAG 59.720 37.037 23.46 0.00 0.00 3.61
509 521 5.237048 CACCATCGAAACCATTGGAATTTT 58.763 37.500 10.37 0.00 33.36 1.82
515 527 1.472480 GACCACCATCGAAACCATTGG 59.528 52.381 0.00 0.00 35.31 3.16
552 565 6.741358 CGATCCTAAACAAGGTTTCGAATTTC 59.259 38.462 0.00 0.00 46.18 2.17
577 590 3.172471 AGGGATAGGAATCGGACTACC 57.828 52.381 0.00 0.00 32.44 3.18
639 653 5.607477 GAATCATACGTTGGAACATCCCTA 58.393 41.667 0.00 0.00 39.30 3.53
645 659 3.255725 GGACGAATCATACGTTGGAACA 58.744 45.455 0.00 0.00 43.97 3.18
646 660 2.606272 GGGACGAATCATACGTTGGAAC 59.394 50.000 0.00 0.00 43.97 3.62
647 661 2.419021 GGGGACGAATCATACGTTGGAA 60.419 50.000 0.00 0.00 43.97 3.53
669 683 3.047857 TCCATCAGATATGTTGGAGCCA 58.952 45.455 14.74 0.00 33.97 4.75
674 688 2.146342 GGCGTCCATCAGATATGTTGG 58.854 52.381 10.63 10.63 0.00 3.77
676 690 3.118261 AGTTGGCGTCCATCAGATATGTT 60.118 43.478 8.86 0.00 31.53 2.71
677 691 2.435805 AGTTGGCGTCCATCAGATATGT 59.564 45.455 8.86 0.00 31.53 2.29
678 692 3.117491 AGTTGGCGTCCATCAGATATG 57.883 47.619 8.86 0.00 31.53 1.78
808 1762 6.706270 ACTATCGCTCAAACTTTTCTCAGAAA 59.294 34.615 0.00 0.00 0.00 2.52
809 1763 6.223852 ACTATCGCTCAAACTTTTCTCAGAA 58.776 36.000 0.00 0.00 0.00 3.02
810 1764 5.784177 ACTATCGCTCAAACTTTTCTCAGA 58.216 37.500 0.00 0.00 0.00 3.27
811 1765 6.473397 AACTATCGCTCAAACTTTTCTCAG 57.527 37.500 0.00 0.00 0.00 3.35
812 1766 6.861065 AAACTATCGCTCAAACTTTTCTCA 57.139 33.333 0.00 0.00 0.00 3.27
896 1850 0.976641 GGGAGAGTGATGTGACCACA 59.023 55.000 5.22 5.22 46.44 4.17
954 1915 1.993653 CTTGGATGAGGCCTGTCCA 59.006 57.895 25.66 25.66 40.13 4.02
980 1941 4.006319 GAGGAGCAGTTTATATGATGGCC 58.994 47.826 0.00 0.00 0.00 5.36
1014 1975 1.446966 GCCACGGAGAGAGAGCAAC 60.447 63.158 0.00 0.00 0.00 4.17
1110 2076 1.964608 GCGTCCACCTACTTACCCCC 61.965 65.000 0.00 0.00 0.00 5.40
1146 2112 4.693095 GGAATCTTGCGGAAGAGATAATCC 59.307 45.833 23.92 19.44 41.62 3.01
1162 2128 3.751698 CGAAGAAAAGAACGGGGAATCTT 59.248 43.478 0.00 0.00 37.49 2.40
1176 2142 2.740826 CCGAGCGGCCGAAGAAAA 60.741 61.111 33.48 0.00 0.00 2.29
1263 2233 2.887568 GCACGGGAGAGCACGATG 60.888 66.667 0.00 0.00 45.89 3.84
1288 2258 1.425428 GCGAACAGAATCAAGCCGG 59.575 57.895 0.00 0.00 0.00 6.13
1455 2425 1.398390 CCTAGCAAGCGCGAATCTTTT 59.602 47.619 12.10 0.00 45.49 2.27
1484 2454 0.179029 ACAGCACCAAAGCCGTAGTT 60.179 50.000 0.00 0.00 34.23 2.24
1500 2470 1.884579 AGAGCAGCACCAATCAAACAG 59.115 47.619 0.00 0.00 0.00 3.16
1514 2484 3.683822 GGTTTGAGATGAACAGAGAGCAG 59.316 47.826 0.00 0.00 0.00 4.24
1572 2549 7.285401 AGCATTATCAACTCGAATACCCATTTT 59.715 33.333 0.00 0.00 0.00 1.82
1577 2554 5.057149 ACAGCATTATCAACTCGAATACCC 58.943 41.667 0.00 0.00 0.00 3.69
1584 2561 3.270027 TCCCAACAGCATTATCAACTCG 58.730 45.455 0.00 0.00 0.00 4.18
1635 2612 6.348868 GCTGGAATTTAAAGGAGAACACAGAG 60.349 42.308 0.00 0.00 0.00 3.35
1701 2678 4.722700 AGGCGGCAGCGGAATTGT 62.723 61.111 13.08 0.00 46.35 2.71
1851 2828 1.376683 GTATGCACCAAGACCGGCA 60.377 57.895 0.00 0.00 41.00 5.69
1894 2872 6.238593 GGAACAATAGAAGATTGAGCACATCC 60.239 42.308 4.36 0.00 33.51 3.51
2056 3037 0.320073 TACAAACGGCAAGGGAGTCG 60.320 55.000 0.00 0.00 0.00 4.18
2218 3199 1.001268 TCATCGTAGCGAGGCATCTTC 60.001 52.381 0.00 0.00 39.91 2.87
2233 3214 0.316772 AGCGATCGTAACGGTCATCG 60.317 55.000 17.81 5.28 36.73 3.84
2275 3256 0.316772 AGCGATCATAACGGTCGTCG 60.317 55.000 0.00 0.00 45.88 5.12
2591 3573 0.322098 TGGCTCGGGTATGTTGTTGG 60.322 55.000 0.00 0.00 0.00 3.77
2639 3665 2.098443 TCGCAACTCTTTTGGGTTTCAC 59.902 45.455 1.58 0.00 40.96 3.18
2949 4019 1.448985 TATGCCGCAACAGAAGGAAC 58.551 50.000 0.00 0.00 0.00 3.62
3067 4137 5.014228 GGTAATAGCCCCTCAATACCTTCAT 59.986 44.000 0.00 0.00 32.06 2.57
3141 4211 4.382754 CGCCAAAATCTTCTGTAACTTTGC 59.617 41.667 0.00 0.00 0.00 3.68
3366 4436 4.512944 AGACAATTAGCTGCACATATTCCG 59.487 41.667 1.02 0.00 0.00 4.30
3375 4445 7.158697 TCTAACAAAGTAGACAATTAGCTGCA 58.841 34.615 1.02 0.00 0.00 4.41
3523 4593 5.183713 CCCTCTTGCAAACTCAACAATGATA 59.816 40.000 0.00 0.00 34.37 2.15
3621 4691 4.764172 AGAGGAGAATTTTCAGTCCATCG 58.236 43.478 0.00 0.00 0.00 3.84
3645 4715 8.301002 AGTAATAAAAGGATTAAACTTTGCGCA 58.699 29.630 5.66 5.66 38.13 6.09
3769 4839 3.268334 AGGTTGATAACTTGGCCACCATA 59.732 43.478 3.88 0.00 31.53 2.74
3806 4876 2.587322 TAAATGAGACTGGGGCCGCG 62.587 60.000 15.95 12.29 0.00 6.46
4052 5122 7.692908 TTCAAAGGAACATTCGAAAATTCAC 57.307 32.000 20.22 12.65 0.00 3.18
4134 5204 1.025812 TTCCGTGTTTTGCGTGGAAT 58.974 45.000 0.00 0.00 33.95 3.01
4229 5299 3.258622 GGATGGCTAAGTACGGCTTATCT 59.741 47.826 16.30 0.00 38.82 1.98
4242 5312 2.373169 GGTCAGGATCATGGATGGCTAA 59.627 50.000 7.64 0.00 0.00 3.09
4257 5327 3.708631 ACACCATTGAGATAGAGGTCAGG 59.291 47.826 0.00 0.00 0.00 3.86
4297 5369 0.033920 GTTTCAACTACGGTCGGGGT 59.966 55.000 0.00 0.00 0.00 4.95
4303 5375 1.589803 GCACCTGTTTCAACTACGGT 58.410 50.000 0.00 0.00 0.00 4.83
4412 5484 8.548880 ACCACACATATAATACCTACAGACTT 57.451 34.615 0.00 0.00 0.00 3.01
4556 5727 1.603172 CCCATAAGATCTCGCGACCAC 60.603 57.143 3.71 0.00 0.00 4.16
4625 5796 3.088532 AGAGAGGCAACAACAACAACAA 58.911 40.909 0.00 0.00 41.41 2.83
4626 5797 2.682856 GAGAGAGGCAACAACAACAACA 59.317 45.455 0.00 0.00 41.41 3.33
4627 5798 2.033424 GGAGAGAGGCAACAACAACAAC 59.967 50.000 0.00 0.00 41.41 3.32
4628 5799 2.297701 GGAGAGAGGCAACAACAACAA 58.702 47.619 0.00 0.00 41.41 2.83
4630 5801 1.239347 GGGAGAGAGGCAACAACAAC 58.761 55.000 0.00 0.00 41.41 3.32
4632 5803 0.108585 GTGGGAGAGAGGCAACAACA 59.891 55.000 0.00 0.00 41.41 3.33
4633 5804 0.108585 TGTGGGAGAGAGGCAACAAC 59.891 55.000 0.00 0.00 41.41 3.32
4634 5805 0.843309 TTGTGGGAGAGAGGCAACAA 59.157 50.000 0.00 0.00 41.41 2.83
4635 5806 0.843309 TTTGTGGGAGAGAGGCAACA 59.157 50.000 0.00 0.00 41.41 3.33
4636 5807 2.206576 ATTTGTGGGAGAGAGGCAAC 57.793 50.000 0.00 0.00 0.00 4.17
4637 5808 2.978156 AATTTGTGGGAGAGAGGCAA 57.022 45.000 0.00 0.00 0.00 4.52
4639 5810 4.526970 TGATTAATTTGTGGGAGAGAGGC 58.473 43.478 0.00 0.00 0.00 4.70
4774 5959 3.124270 CACAATGCCACGCCGCTA 61.124 61.111 0.00 0.00 0.00 4.26
4844 6029 2.438021 CCGGAATTAATGGAGAGACCCA 59.562 50.000 0.00 0.00 41.05 4.51
4947 6138 0.727398 GTACCACATCGCTCCTTTGC 59.273 55.000 0.00 0.00 0.00 3.68
5272 7367 8.180267 GCTGCAAAAATGCATATCTATACCTAG 58.820 37.037 0.00 0.00 44.47 3.02
5353 7448 7.390440 AGCAACATTAAGAATACAGCAACAGTA 59.610 33.333 0.00 0.00 0.00 2.74
5356 7451 6.016360 ACAGCAACATTAAGAATACAGCAACA 60.016 34.615 0.00 0.00 0.00 3.33
5402 7497 4.579869 GGGATCTAGAAAAGCAACACAGA 58.420 43.478 0.00 0.00 0.00 3.41
5630 7725 4.335416 TCACAAGGAAGCTCATTAAAGGG 58.665 43.478 0.00 0.00 0.00 3.95
5664 7760 7.873739 AGCTAAAAATCAAATGTGCACTAAC 57.126 32.000 19.41 0.00 0.00 2.34
5791 7887 5.355071 GGAGATTGCACAAACATCAGTCATA 59.645 40.000 0.00 0.00 0.00 2.15
5959 8059 2.525368 ACATGGCTGAAAGGTAAACCC 58.475 47.619 0.00 0.00 36.42 4.11
6008 8108 9.384849 AGTGGCAGGCATGAATAGATATATATA 57.615 33.333 0.62 0.00 0.00 0.86
6164 8264 3.046374 ACCCACTTATCACCAGATACCC 58.954 50.000 0.00 0.00 36.49 3.69
6183 8283 3.322828 AGCATCCATCAAATTATGGCACC 59.677 43.478 2.73 0.00 45.21 5.01
6186 8286 5.474532 TCAGTAGCATCCATCAAATTATGGC 59.525 40.000 2.73 0.00 45.21 4.40
6221 8321 6.564709 TCAGTAGCATCCATCAAATTATGC 57.435 37.500 0.00 0.00 43.97 3.14
6260 8360 4.854173 ACTATGCCACCACAATATTCACA 58.146 39.130 0.00 0.00 0.00 3.58
6291 8391 1.508632 TACAAAGTTGCCGAGAGTGC 58.491 50.000 0.00 0.00 0.00 4.40
6301 8401 5.415701 ACCAGGCTCATGTTATACAAAGTTG 59.584 40.000 0.00 0.00 0.00 3.16
6318 8419 4.729868 AGAAGAATGTAAAACACCAGGCT 58.270 39.130 0.00 0.00 0.00 4.58
6324 8425 6.203723 ACTCAGCAGAGAAGAATGTAAAACAC 59.796 38.462 13.73 0.00 44.98 3.32
6648 8776 3.312736 AATTCAAGTTGAGGGTGGTGT 57.687 42.857 5.56 0.00 0.00 4.16
6673 8801 1.081892 CCCAAGAGACGATGCAACAG 58.918 55.000 0.00 0.00 0.00 3.16
6708 8836 8.949177 TCGACAAACATACTAACATAGTCTACA 58.051 33.333 0.00 0.00 40.14 2.74
6818 8946 1.094785 GACAAGGCGGCATAACACAT 58.905 50.000 13.08 0.00 0.00 3.21
6866 8994 6.316390 GCTAGCCAAGTCTACATAACATTGTT 59.684 38.462 2.29 7.30 0.00 2.83
6877 9005 4.202202 ACTGATCATGCTAGCCAAGTCTAC 60.202 45.833 13.29 0.00 0.00 2.59
6904 9032 2.502142 TTAGCTAGTGACGTCTGGGA 57.498 50.000 17.92 0.00 0.00 4.37
6905 9033 3.802948 ATTTAGCTAGTGACGTCTGGG 57.197 47.619 17.92 5.65 0.00 4.45
6970 9098 4.901868 TGTAAACGCTCTTACATTTCCCT 58.098 39.130 3.99 0.00 36.97 4.20
6971 9099 5.813080 ATGTAAACGCTCTTACATTTCCC 57.187 39.130 12.21 0.00 45.83 3.97
6978 9108 7.578169 AAAGTAGTGATGTAAACGCTCTTAC 57.422 36.000 0.00 0.00 29.98 2.34
6989 9119 4.359105 ACAGGGCCTAAAGTAGTGATGTA 58.641 43.478 5.28 0.00 0.00 2.29
6990 9120 3.182152 ACAGGGCCTAAAGTAGTGATGT 58.818 45.455 5.28 0.00 0.00 3.06
6991 9121 3.914426 ACAGGGCCTAAAGTAGTGATG 57.086 47.619 5.28 0.00 0.00 3.07
6994 9124 3.081804 CCAAACAGGGCCTAAAGTAGTG 58.918 50.000 5.28 2.55 0.00 2.74
7007 9137 3.261981 ACGCTAGTATTCCCAAACAGG 57.738 47.619 0.00 0.00 37.03 4.00
7008 9138 5.640357 TGTAAACGCTAGTATTCCCAAACAG 59.360 40.000 0.00 0.00 0.00 3.16
7009 9139 5.549347 TGTAAACGCTAGTATTCCCAAACA 58.451 37.500 0.00 0.00 0.00 2.83
7010 9140 6.314400 TGATGTAAACGCTAGTATTCCCAAAC 59.686 38.462 0.00 0.00 0.00 2.93
7011 9141 6.314400 GTGATGTAAACGCTAGTATTCCCAAA 59.686 38.462 0.00 0.00 0.00 3.28
7012 9142 5.813672 GTGATGTAAACGCTAGTATTCCCAA 59.186 40.000 0.00 0.00 0.00 4.12
7013 9143 5.128171 AGTGATGTAAACGCTAGTATTCCCA 59.872 40.000 0.00 0.00 0.00 4.37
7014 9144 5.598769 AGTGATGTAAACGCTAGTATTCCC 58.401 41.667 0.00 0.00 0.00 3.97
7015 9145 7.424001 AGTAGTGATGTAAACGCTAGTATTCC 58.576 38.462 0.00 0.00 34.19 3.01
7016 9146 8.853469 AAGTAGTGATGTAAACGCTAGTATTC 57.147 34.615 0.00 0.00 34.77 1.75
7018 9148 9.947669 CTAAAGTAGTGATGTAAACGCTAGTAT 57.052 33.333 0.00 0.00 34.77 2.12
7019 9149 8.400947 CCTAAAGTAGTGATGTAAACGCTAGTA 58.599 37.037 0.00 0.00 34.77 1.82
7020 9150 7.256286 CCTAAAGTAGTGATGTAAACGCTAGT 58.744 38.462 0.00 0.00 37.01 2.57
7021 9151 6.198591 GCCTAAAGTAGTGATGTAAACGCTAG 59.801 42.308 0.00 0.00 32.16 3.42
7022 9152 6.038356 GCCTAAAGTAGTGATGTAAACGCTA 58.962 40.000 0.00 0.00 29.98 4.26
7023 9153 4.868734 GCCTAAAGTAGTGATGTAAACGCT 59.131 41.667 0.00 0.00 32.78 5.07
7024 9154 4.033702 GGCCTAAAGTAGTGATGTAAACGC 59.966 45.833 0.00 0.00 0.00 4.84
7025 9155 4.569564 GGGCCTAAAGTAGTGATGTAAACG 59.430 45.833 0.84 0.00 0.00 3.60
7026 9156 5.585047 CAGGGCCTAAAGTAGTGATGTAAAC 59.415 44.000 5.28 0.00 0.00 2.01
7027 9157 5.249852 ACAGGGCCTAAAGTAGTGATGTAAA 59.750 40.000 5.28 0.00 0.00 2.01
7028 9158 4.781087 ACAGGGCCTAAAGTAGTGATGTAA 59.219 41.667 5.28 0.00 0.00 2.41
7029 9159 4.359105 ACAGGGCCTAAAGTAGTGATGTA 58.641 43.478 5.28 0.00 0.00 2.29
7030 9160 3.182152 ACAGGGCCTAAAGTAGTGATGT 58.818 45.455 5.28 0.00 0.00 3.06
7031 9161 3.914426 ACAGGGCCTAAAGTAGTGATG 57.086 47.619 5.28 0.00 0.00 3.07
7032 9162 4.567747 CCAAACAGGGCCTAAAGTAGTGAT 60.568 45.833 5.28 0.00 0.00 3.06
7033 9163 3.244770 CCAAACAGGGCCTAAAGTAGTGA 60.245 47.826 5.28 0.00 0.00 3.41
7034 9164 3.081804 CCAAACAGGGCCTAAAGTAGTG 58.918 50.000 5.28 2.55 0.00 2.74
7035 9165 3.434940 CCAAACAGGGCCTAAAGTAGT 57.565 47.619 5.28 0.00 0.00 2.73
7047 9177 3.274288 GAGCAGAGTATTCCCAAACAGG 58.726 50.000 0.00 0.00 37.03 4.00
7048 9178 3.274288 GGAGCAGAGTATTCCCAAACAG 58.726 50.000 0.00 0.00 0.00 3.16
7049 9179 2.354704 CGGAGCAGAGTATTCCCAAACA 60.355 50.000 0.00 0.00 0.00 2.83
7050 9180 2.280628 CGGAGCAGAGTATTCCCAAAC 58.719 52.381 0.00 0.00 0.00 2.93
7051 9181 1.209504 CCGGAGCAGAGTATTCCCAAA 59.790 52.381 0.00 0.00 0.00 3.28
7052 9182 0.830648 CCGGAGCAGAGTATTCCCAA 59.169 55.000 0.00 0.00 0.00 4.12
7053 9183 1.048724 CCCGGAGCAGAGTATTCCCA 61.049 60.000 0.73 0.00 0.00 4.37
7054 9184 0.759436 TCCCGGAGCAGAGTATTCCC 60.759 60.000 0.73 0.00 0.00 3.97
7055 9185 0.676736 CTCCCGGAGCAGAGTATTCC 59.323 60.000 0.73 0.00 0.00 3.01
7083 9213 0.814812 GTACTAGAGCTCCGTCCGCT 60.815 60.000 10.93 0.00 41.15 5.52
7084 9214 1.094073 TGTACTAGAGCTCCGTCCGC 61.094 60.000 10.93 3.54 0.00 5.54
7085 9215 1.376543 TTGTACTAGAGCTCCGTCCG 58.623 55.000 10.93 0.00 0.00 4.79
7086 9216 3.863142 TTTTGTACTAGAGCTCCGTCC 57.137 47.619 10.93 0.00 0.00 4.79
7087 9217 5.251601 AGATTTTGTACTAGAGCTCCGTC 57.748 43.478 10.93 3.66 0.00 4.79
7088 9218 5.299782 CCTAGATTTTGTACTAGAGCTCCGT 59.700 44.000 10.93 10.77 38.53 4.69
7089 9219 5.531659 TCCTAGATTTTGTACTAGAGCTCCG 59.468 44.000 10.93 4.43 38.53 4.63
7090 9220 6.516028 GCTCCTAGATTTTGTACTAGAGCTCC 60.516 46.154 10.93 0.00 38.53 4.70
7091 9221 6.443792 GCTCCTAGATTTTGTACTAGAGCTC 58.556 44.000 5.27 5.27 38.53 4.09
7092 9222 5.009210 CGCTCCTAGATTTTGTACTAGAGCT 59.991 44.000 0.00 0.00 38.53 4.09
7093 9223 5.008811 TCGCTCCTAGATTTTGTACTAGAGC 59.991 44.000 0.00 0.05 38.53 4.09
7094 9224 6.621316 TCGCTCCTAGATTTTGTACTAGAG 57.379 41.667 0.00 0.00 38.53 2.43
7095 9225 5.008811 GCTCGCTCCTAGATTTTGTACTAGA 59.991 44.000 0.00 0.00 38.53 2.43
7096 9226 5.216648 GCTCGCTCCTAGATTTTGTACTAG 58.783 45.833 0.00 0.00 36.73 2.57
7097 9227 4.643334 TGCTCGCTCCTAGATTTTGTACTA 59.357 41.667 0.00 0.00 0.00 1.82
7098 9228 3.447586 TGCTCGCTCCTAGATTTTGTACT 59.552 43.478 0.00 0.00 0.00 2.73
7099 9229 3.782046 TGCTCGCTCCTAGATTTTGTAC 58.218 45.455 0.00 0.00 0.00 2.90
7100 9230 4.465632 TTGCTCGCTCCTAGATTTTGTA 57.534 40.909 0.00 0.00 0.00 2.41
7101 9231 3.334583 TTGCTCGCTCCTAGATTTTGT 57.665 42.857 0.00 0.00 0.00 2.83
7102 9232 3.181506 GGTTTGCTCGCTCCTAGATTTTG 60.182 47.826 0.00 0.00 0.00 2.44
7103 9233 3.010420 GGTTTGCTCGCTCCTAGATTTT 58.990 45.455 0.00 0.00 0.00 1.82
7104 9234 2.633488 GGTTTGCTCGCTCCTAGATTT 58.367 47.619 0.00 0.00 0.00 2.17
7105 9235 1.471676 CGGTTTGCTCGCTCCTAGATT 60.472 52.381 0.00 0.00 0.00 2.40
7106 9236 0.103208 CGGTTTGCTCGCTCCTAGAT 59.897 55.000 0.00 0.00 0.00 1.98
7107 9237 1.511305 CGGTTTGCTCGCTCCTAGA 59.489 57.895 0.00 0.00 0.00 2.43
7108 9238 4.094684 CGGTTTGCTCGCTCCTAG 57.905 61.111 0.00 0.00 0.00 3.02
7134 9264 0.674581 TCACCAGCTCCGCAGATTTG 60.675 55.000 0.00 0.00 0.00 2.32
7135 9265 0.036732 TTCACCAGCTCCGCAGATTT 59.963 50.000 0.00 0.00 0.00 2.17
7136 9266 0.254178 ATTCACCAGCTCCGCAGATT 59.746 50.000 0.00 0.00 0.00 2.40
7137 9267 0.254178 AATTCACCAGCTCCGCAGAT 59.746 50.000 0.00 0.00 0.00 2.90
7138 9268 0.391661 GAATTCACCAGCTCCGCAGA 60.392 55.000 0.00 0.00 0.00 4.26
7139 9269 1.372087 GGAATTCACCAGCTCCGCAG 61.372 60.000 7.93 0.00 0.00 5.18
7140 9270 1.377202 GGAATTCACCAGCTCCGCA 60.377 57.895 7.93 0.00 0.00 5.69
7141 9271 1.078143 AGGAATTCACCAGCTCCGC 60.078 57.895 7.93 0.00 32.91 5.54
7142 9272 0.250234 TCAGGAATTCACCAGCTCCG 59.750 55.000 7.93 0.00 32.91 4.63
7143 9273 2.087646 GTTCAGGAATTCACCAGCTCC 58.912 52.381 7.93 0.00 0.00 4.70
7144 9274 1.734465 CGTTCAGGAATTCACCAGCTC 59.266 52.381 7.93 0.00 0.00 4.09
7145 9275 1.813513 CGTTCAGGAATTCACCAGCT 58.186 50.000 7.93 0.00 0.00 4.24
7146 9276 0.169009 GCGTTCAGGAATTCACCAGC 59.831 55.000 7.93 1.27 0.00 4.85
7147 9277 0.443869 CGCGTTCAGGAATTCACCAG 59.556 55.000 7.93 0.00 0.00 4.00
7148 9278 0.953471 CCGCGTTCAGGAATTCACCA 60.953 55.000 4.92 0.00 0.00 4.17
7149 9279 1.644786 CCCGCGTTCAGGAATTCACC 61.645 60.000 4.92 0.00 0.00 4.02
7150 9280 1.794222 CCCGCGTTCAGGAATTCAC 59.206 57.895 4.92 0.00 0.00 3.18
7151 9281 2.038269 GCCCGCGTTCAGGAATTCA 61.038 57.895 4.92 0.00 0.00 2.57
7152 9282 1.305930 AAGCCCGCGTTCAGGAATTC 61.306 55.000 4.92 0.00 0.00 2.17
7153 9283 1.303317 AAGCCCGCGTTCAGGAATT 60.303 52.632 4.92 0.00 0.00 2.17
7154 9284 2.040544 CAAGCCCGCGTTCAGGAAT 61.041 57.895 4.92 0.00 0.00 3.01
7155 9285 2.668212 CAAGCCCGCGTTCAGGAA 60.668 61.111 4.92 0.00 0.00 3.36
7156 9286 4.697756 CCAAGCCCGCGTTCAGGA 62.698 66.667 4.92 0.00 0.00 3.86
7158 9288 3.726517 CACCAAGCCCGCGTTCAG 61.727 66.667 4.92 0.00 0.00 3.02
7159 9289 3.545124 ATCACCAAGCCCGCGTTCA 62.545 57.895 4.92 0.00 0.00 3.18
7160 9290 2.746277 ATCACCAAGCCCGCGTTC 60.746 61.111 4.92 0.00 0.00 3.95
7161 9291 1.895020 TAGATCACCAAGCCCGCGTT 61.895 55.000 4.92 0.00 0.00 4.84
7162 9292 1.686325 ATAGATCACCAAGCCCGCGT 61.686 55.000 4.92 0.00 0.00 6.01
7163 9293 0.317160 TATAGATCACCAAGCCCGCG 59.683 55.000 0.00 0.00 0.00 6.46
7164 9294 2.543777 TTATAGATCACCAAGCCCGC 57.456 50.000 0.00 0.00 0.00 6.13
7165 9295 3.560068 GTGTTTATAGATCACCAAGCCCG 59.440 47.826 0.00 0.00 0.00 6.13
7166 9296 4.781934 AGTGTTTATAGATCACCAAGCCC 58.218 43.478 0.00 0.00 33.21 5.19
7167 9297 5.675538 AGAGTGTTTATAGATCACCAAGCC 58.324 41.667 0.00 0.00 33.21 4.35
7168 9298 8.894768 ATAAGAGTGTTTATAGATCACCAAGC 57.105 34.615 0.00 0.00 33.21 4.01
7188 9318 9.810870 GGTACTCCCTCTTAGAGAAATATAAGA 57.189 37.037 11.32 0.00 36.04 2.10
7189 9319 9.816787 AGGTACTCCCTCTTAGAGAAATATAAG 57.183 37.037 11.32 0.39 40.71 1.73
7192 9322 9.508721 AAAAGGTACTCCCTCTTAGAGAAATAT 57.491 33.333 11.32 0.00 45.47 1.28
7193 9323 8.912614 AAAAGGTACTCCCTCTTAGAGAAATA 57.087 34.615 11.32 0.00 45.47 1.40
7194 9324 7.816300 AAAAGGTACTCCCTCTTAGAGAAAT 57.184 36.000 11.32 0.00 45.47 2.17
7195 9325 7.399478 CCTAAAAGGTACTCCCTCTTAGAGAAA 59.601 40.741 11.32 0.00 45.47 2.52
7196 9326 6.896307 CCTAAAAGGTACTCCCTCTTAGAGAA 59.104 42.308 11.32 0.00 45.47 2.87
7197 9327 6.433441 CCTAAAAGGTACTCCCTCTTAGAGA 58.567 44.000 11.32 0.00 45.47 3.10
7198 9328 5.069383 GCCTAAAAGGTACTCCCTCTTAGAG 59.931 48.000 1.56 1.56 45.47 2.43
7199 9329 4.961099 GCCTAAAAGGTACTCCCTCTTAGA 59.039 45.833 3.56 0.00 45.47 2.10
7200 9330 4.715297 TGCCTAAAAGGTACTCCCTCTTAG 59.285 45.833 0.00 0.00 45.47 2.18
7201 9331 4.691238 TGCCTAAAAGGTACTCCCTCTTA 58.309 43.478 0.00 0.00 45.47 2.10
7202 9332 3.527937 TGCCTAAAAGGTACTCCCTCTT 58.472 45.455 0.00 0.00 45.47 2.85
7203 9333 3.200958 TGCCTAAAAGGTACTCCCTCT 57.799 47.619 0.00 0.00 45.47 3.69
7258 9388 4.074970 AGGAACACTTTGCAGACCATAAG 58.925 43.478 0.00 0.00 0.00 1.73
7269 9399 7.759433 ACAGAAAATTTGTACAGGAACACTTTG 59.241 33.333 0.00 0.00 0.00 2.77
7270 9400 7.836842 ACAGAAAATTTGTACAGGAACACTTT 58.163 30.769 0.00 0.00 0.00 2.66
7299 9442 7.106239 TCAGCCAAAAACAATTCCTTACAAAA 58.894 30.769 0.00 0.00 0.00 2.44
7302 9445 5.860941 TCAGCCAAAAACAATTCCTTACA 57.139 34.783 0.00 0.00 0.00 2.41
7305 9448 8.922931 AAATATTCAGCCAAAAACAATTCCTT 57.077 26.923 0.00 0.00 0.00 3.36
7328 9471 8.472007 ACCTATTTGGAACACATGAACTTAAA 57.528 30.769 0.00 0.00 39.29 1.52
7459 9610 4.009675 CCATACCATGTACTGTTGTTGCT 58.990 43.478 0.00 0.00 0.00 3.91
7461 9612 4.092821 CGTCCATACCATGTACTGTTGTTG 59.907 45.833 0.00 0.00 0.00 3.33
7469 9620 2.864343 GTTGCTCGTCCATACCATGTAC 59.136 50.000 0.00 0.00 0.00 2.90
7484 9635 4.391523 GGAGAAAAGAGATGTCTGTTGCTC 59.608 45.833 0.00 7.03 29.49 4.26
7645 9805 1.211969 GTACCGCAGACGAAGCAGA 59.788 57.895 0.00 0.00 43.93 4.26
7646 9806 1.805945 GGTACCGCAGACGAAGCAG 60.806 63.158 0.00 0.00 43.93 4.24
7647 9807 2.260434 GGTACCGCAGACGAAGCA 59.740 61.111 0.00 0.00 43.93 3.91
7648 9808 2.609183 ATCGGTACCGCAGACGAAGC 62.609 60.000 29.64 0.00 43.93 3.86
7649 9809 0.591741 GATCGGTACCGCAGACGAAG 60.592 60.000 29.64 0.00 43.93 3.79
7650 9810 1.028330 AGATCGGTACCGCAGACGAA 61.028 55.000 29.64 10.92 43.93 3.85
7651 9811 1.434622 GAGATCGGTACCGCAGACGA 61.435 60.000 29.64 11.72 43.93 4.20
7652 9812 1.009900 GAGATCGGTACCGCAGACG 60.010 63.158 29.64 4.93 39.59 4.18
7653 9813 1.359475 GGAGATCGGTACCGCAGAC 59.641 63.158 29.64 18.71 39.59 3.51
7673 9833 1.611965 GCCAGAAGGATGGGCTCTT 59.388 57.895 0.00 0.00 44.32 2.85
7812 9972 1.270412 TGTCTTGTGGATTACGGCGTT 60.270 47.619 21.24 0.00 0.00 4.84
7825 9985 1.001597 GACGGTCGAGAAGTGTCTTGT 60.002 52.381 0.00 0.00 36.71 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.