Multiple sequence alignment - TraesCS1A01G107600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G107600 | chr1A | 100.000 | 4784 | 0 | 0 | 1 | 4784 | 105907285 | 105902502 | 0.000000e+00 | 8835.0 |
1 | TraesCS1A01G107600 | chr1A | 99.482 | 193 | 0 | 1 | 2389 | 2580 | 534541847 | 534541655 | 2.740000e-92 | 350.0 |
2 | TraesCS1A01G107600 | chr1A | 85.470 | 117 | 5 | 10 | 2011 | 2121 | 105905165 | 105905275 | 1.410000e-20 | 111.0 |
3 | TraesCS1A01G107600 | chr1A | 97.619 | 42 | 0 | 1 | 2026 | 2067 | 415637354 | 415637314 | 2.390000e-08 | 71.3 |
4 | TraesCS1A01G107600 | chr1A | 97.436 | 39 | 0 | 1 | 2073 | 2110 | 415637316 | 415637354 | 1.110000e-06 | 65.8 |
5 | TraesCS1A01G107600 | chr1D | 96.341 | 2241 | 55 | 12 | 1 | 2229 | 106954443 | 106956668 | 0.000000e+00 | 3659.0 |
6 | TraesCS1A01G107600 | chr1D | 94.128 | 2231 | 97 | 15 | 2576 | 4784 | 106957871 | 106960089 | 0.000000e+00 | 3363.0 |
7 | TraesCS1A01G107600 | chr1D | 94.595 | 111 | 4 | 2 | 2225 | 2333 | 106957742 | 106957852 | 2.290000e-38 | 171.0 |
8 | TraesCS1A01G107600 | chr1D | 86.275 | 102 | 6 | 6 | 2011 | 2110 | 106956559 | 106956464 | 2.360000e-18 | 104.0 |
9 | TraesCS1A01G107600 | chr1D | 97.500 | 40 | 0 | 1 | 2028 | 2067 | 326158694 | 326158656 | 3.090000e-07 | 67.6 |
10 | TraesCS1A01G107600 | chr1D | 97.297 | 37 | 0 | 1 | 2352 | 2388 | 106957853 | 106957888 | 1.440000e-05 | 62.1 |
11 | TraesCS1A01G107600 | chr1D | 97.297 | 37 | 0 | 1 | 2073 | 2108 | 326158658 | 326158694 | 1.440000e-05 | 62.1 |
12 | TraesCS1A01G107600 | chr1B | 91.914 | 2226 | 110 | 31 | 2576 | 4774 | 159915861 | 159913679 | 0.000000e+00 | 3049.0 |
13 | TraesCS1A01G107600 | chr1B | 97.079 | 1164 | 33 | 1 | 896 | 2059 | 159917283 | 159916121 | 0.000000e+00 | 1960.0 |
14 | TraesCS1A01G107600 | chr1B | 97.351 | 906 | 13 | 4 | 1 | 897 | 159918345 | 159917442 | 0.000000e+00 | 1530.0 |
15 | TraesCS1A01G107600 | chr1B | 92.829 | 251 | 8 | 4 | 2087 | 2333 | 159916125 | 159915881 | 5.890000e-94 | 355.0 |
16 | TraesCS1A01G107600 | chr1B | 93.258 | 89 | 1 | 4 | 2026 | 2110 | 481710715 | 481710802 | 5.030000e-25 | 126.0 |
17 | TraesCS1A01G107600 | chr1B | 89.000 | 100 | 4 | 6 | 2018 | 2111 | 481710812 | 481710714 | 3.030000e-22 | 117.0 |
18 | TraesCS1A01G107600 | chr1B | 95.122 | 41 | 2 | 0 | 2348 | 2388 | 159915884 | 159915844 | 1.110000e-06 | 65.8 |
19 | TraesCS1A01G107600 | chr3A | 96.818 | 220 | 6 | 1 | 2372 | 2591 | 359345748 | 359345966 | 2.720000e-97 | 366.0 |
20 | TraesCS1A01G107600 | chr3A | 100.000 | 190 | 0 | 0 | 2386 | 2575 | 437863750 | 437863561 | 7.620000e-93 | 351.0 |
21 | TraesCS1A01G107600 | chr3A | 84.685 | 111 | 14 | 3 | 4542 | 4651 | 156232088 | 156231980 | 1.820000e-19 | 108.0 |
22 | TraesCS1A01G107600 | chr3A | 87.234 | 94 | 7 | 5 | 2024 | 2114 | 434000981 | 434000890 | 8.470000e-18 | 102.0 |
23 | TraesCS1A01G107600 | chr4A | 100.000 | 192 | 0 | 0 | 2389 | 2580 | 31161982 | 31161791 | 5.890000e-94 | 355.0 |
24 | TraesCS1A01G107600 | chr2A | 98.990 | 198 | 1 | 1 | 2389 | 2586 | 775435555 | 775435359 | 2.120000e-93 | 353.0 |
25 | TraesCS1A01G107600 | chr2A | 84.483 | 116 | 17 | 1 | 4546 | 4660 | 25042412 | 25042527 | 3.910000e-21 | 113.0 |
26 | TraesCS1A01G107600 | chr2B | 100.000 | 190 | 0 | 0 | 2387 | 2576 | 197148792 | 197148603 | 7.620000e-93 | 351.0 |
27 | TraesCS1A01G107600 | chr5B | 96.279 | 215 | 4 | 4 | 2378 | 2589 | 527606175 | 527605962 | 2.740000e-92 | 350.0 |
28 | TraesCS1A01G107600 | chr5A | 99.479 | 192 | 1 | 0 | 2385 | 2576 | 485382281 | 485382090 | 2.740000e-92 | 350.0 |
29 | TraesCS1A01G107600 | chr5A | 87.000 | 100 | 13 | 0 | 4550 | 4649 | 547820771 | 547820672 | 3.910000e-21 | 113.0 |
30 | TraesCS1A01G107600 | chr5A | 89.888 | 89 | 7 | 2 | 2023 | 2110 | 692175876 | 692175963 | 3.910000e-21 | 113.0 |
31 | TraesCS1A01G107600 | chr5A | 85.047 | 107 | 15 | 1 | 4550 | 4655 | 584069252 | 584069146 | 1.820000e-19 | 108.0 |
32 | TraesCS1A01G107600 | chr7A | 98.477 | 197 | 3 | 0 | 2377 | 2573 | 433079869 | 433079673 | 9.850000e-92 | 348.0 |
33 | TraesCS1A01G107600 | chr7A | 88.764 | 89 | 8 | 2 | 2023 | 2110 | 721706001 | 721706088 | 1.820000e-19 | 108.0 |
34 | TraesCS1A01G107600 | chr3D | 89.691 | 97 | 10 | 0 | 4550 | 4646 | 574442778 | 574442682 | 1.810000e-24 | 124.0 |
35 | TraesCS1A01G107600 | chr3D | 82.979 | 94 | 6 | 7 | 2024 | 2114 | 301440314 | 301440400 | 5.130000e-10 | 76.8 |
36 | TraesCS1A01G107600 | chr5D | 86.087 | 115 | 14 | 2 | 4534 | 4648 | 530428441 | 530428329 | 6.500000e-24 | 122.0 |
37 | TraesCS1A01G107600 | chr5D | 91.250 | 80 | 5 | 2 | 2032 | 2110 | 184043722 | 184043800 | 1.820000e-19 | 108.0 |
38 | TraesCS1A01G107600 | chr5D | 88.750 | 80 | 7 | 2 | 2026 | 2104 | 184043800 | 184043722 | 3.940000e-16 | 97.1 |
39 | TraesCS1A01G107600 | chr6D | 86.667 | 105 | 14 | 0 | 4545 | 4649 | 345760567 | 345760463 | 3.030000e-22 | 117.0 |
40 | TraesCS1A01G107600 | chr6D | 100.000 | 29 | 0 | 0 | 2079 | 2107 | 242995716 | 242995744 | 2.000000e-03 | 54.7 |
41 | TraesCS1A01G107600 | chr6D | 100.000 | 29 | 0 | 0 | 2029 | 2057 | 242995744 | 242995716 | 2.000000e-03 | 54.7 |
42 | TraesCS1A01G107600 | chr6A | 87.755 | 98 | 12 | 0 | 4550 | 4647 | 442400369 | 442400466 | 1.090000e-21 | 115.0 |
43 | TraesCS1A01G107600 | chr4D | 88.636 | 88 | 8 | 2 | 2024 | 2110 | 36590518 | 36590432 | 6.550000e-19 | 106.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G107600 | chr1A | 105902502 | 105907285 | 4783 | True | 8835.000 | 8835 | 100.00000 | 1 | 4784 | 1 | chr1A.!!$R1 | 4783 |
1 | TraesCS1A01G107600 | chr1D | 106954443 | 106960089 | 5646 | False | 1813.775 | 3659 | 95.59025 | 1 | 4784 | 4 | chr1D.!!$F2 | 4783 |
2 | TraesCS1A01G107600 | chr1B | 159913679 | 159918345 | 4666 | True | 1391.960 | 3049 | 94.85900 | 1 | 4774 | 5 | chr1B.!!$R2 | 4773 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
932 | 1105 | 2.127251 | GCAGCTGCAACTTGTTTAACC | 58.873 | 47.619 | 33.36 | 0.00 | 41.59 | 2.85 | F |
2344 | 3606 | 0.115745 | ACCTACTCCCTCCGTTCCAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 | F |
2425 | 3687 | 0.111253 | AGTGGTAAAGCTGCTGCCTT | 59.889 | 50.000 | 12.44 | 8.34 | 40.80 | 4.35 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2419 | 3681 | 0.037303 | ACCTCATGGTCACAAGGCAG | 59.963 | 55.0 | 0.00 | 0.00 | 44.78 | 4.85 | R |
3780 | 5045 | 0.320374 | CGCACTACTTGGTCCCTCAA | 59.680 | 55.0 | 0.00 | 0.00 | 0.00 | 3.02 | R |
4275 | 5542 | 1.038681 | TGATCACATGCCATGGCCAC | 61.039 | 55.0 | 33.44 | 16.03 | 41.09 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 9.965824 | TTTGTTTCATTTCAAGTTTCTATCCTC | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 3.71 |
665 | 678 | 4.033009 | TGTGGTATCTGAGGACATGTCAT | 58.967 | 43.478 | 26.47 | 20.88 | 0.00 | 3.06 |
812 | 825 | 4.950475 | TCAGATCCGTGTGACTCTAATCTT | 59.050 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
932 | 1105 | 2.127251 | GCAGCTGCAACTTGTTTAACC | 58.873 | 47.619 | 33.36 | 0.00 | 41.59 | 2.85 |
1032 | 1205 | 6.014840 | GGCATCATTATCACAATTCCCAGATT | 60.015 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
1151 | 1327 | 8.628116 | CCAGTTTTGGTGAACTCATTTAGTTGC | 61.628 | 40.741 | 0.00 | 0.00 | 42.95 | 4.17 |
1301 | 1477 | 4.118410 | GTCAGTCTTATGGTCAGCAGATG | 58.882 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
1391 | 1567 | 5.818136 | ATGCACCATACAATACTCAACAC | 57.182 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
1412 | 1588 | 2.540101 | CGTGCCTTCTTTAAGCTATCCG | 59.460 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
1413 | 1589 | 3.737047 | CGTGCCTTCTTTAAGCTATCCGA | 60.737 | 47.826 | 0.00 | 0.00 | 0.00 | 4.55 |
1414 | 1590 | 4.189231 | GTGCCTTCTTTAAGCTATCCGAA | 58.811 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
1566 | 1742 | 6.338146 | TCCAATAATCAGTTCTCTGGTTACG | 58.662 | 40.000 | 3.55 | 0.00 | 46.01 | 3.18 |
1598 | 1774 | 3.228453 | TCCTGTTCCTACTCGTGAAACT | 58.772 | 45.455 | 0.00 | 0.00 | 31.75 | 2.66 |
1799 | 1978 | 7.207454 | TCCAAATGCAAATGCTCCTTTTGGA | 62.207 | 40.000 | 24.51 | 24.51 | 44.19 | 3.53 |
1924 | 2103 | 9.399797 | TGCTTCTAATCTGATGTGTTTTCATAT | 57.600 | 29.630 | 0.00 | 0.00 | 34.41 | 1.78 |
1953 | 2132 | 7.903145 | TCTACTTCTGCTAAGATTTGGTACAA | 58.097 | 34.615 | 6.41 | 0.00 | 36.19 | 2.41 |
2019 | 2198 | 7.418337 | TGGACAGAATAGCTCTTTGTATACA | 57.582 | 36.000 | 0.08 | 0.08 | 29.07 | 2.29 |
2020 | 2199 | 8.023021 | TGGACAGAATAGCTCTTTGTATACAT | 57.977 | 34.615 | 6.36 | 0.00 | 29.07 | 2.29 |
2128 | 2308 | 9.802039 | AGGGAGTAACATTTACAAAAATAGACA | 57.198 | 29.630 | 0.00 | 0.00 | 33.45 | 3.41 |
2284 | 3546 | 1.797635 | GCTCAGTTCTCAGACTTGTGC | 59.202 | 52.381 | 0.00 | 0.00 | 0.00 | 4.57 |
2326 | 3588 | 7.048512 | AGCATAGGACTTTCACCAGTTAATAC | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 1.89 |
2329 | 3591 | 8.701895 | CATAGGACTTTCACCAGTTAATACCTA | 58.298 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2330 | 3592 | 6.944096 | AGGACTTTCACCAGTTAATACCTAC | 58.056 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2331 | 3593 | 6.729569 | AGGACTTTCACCAGTTAATACCTACT | 59.270 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
2332 | 3594 | 7.040494 | GGACTTTCACCAGTTAATACCTACTC | 58.960 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2333 | 3595 | 6.944096 | ACTTTCACCAGTTAATACCTACTCC | 58.056 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2334 | 3596 | 5.945144 | TTCACCAGTTAATACCTACTCCC | 57.055 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
2335 | 3597 | 5.216665 | TCACCAGTTAATACCTACTCCCT | 57.783 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2336 | 3598 | 5.206587 | TCACCAGTTAATACCTACTCCCTC | 58.793 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
2337 | 3599 | 4.344390 | CACCAGTTAATACCTACTCCCTCC | 59.656 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2338 | 3600 | 3.573110 | CCAGTTAATACCTACTCCCTCCG | 59.427 | 52.174 | 0.00 | 0.00 | 0.00 | 4.63 |
2339 | 3601 | 4.213513 | CAGTTAATACCTACTCCCTCCGT | 58.786 | 47.826 | 0.00 | 0.00 | 0.00 | 4.69 |
2340 | 3602 | 4.648307 | CAGTTAATACCTACTCCCTCCGTT | 59.352 | 45.833 | 0.00 | 0.00 | 0.00 | 4.44 |
2341 | 3603 | 4.892345 | AGTTAATACCTACTCCCTCCGTTC | 59.108 | 45.833 | 0.00 | 0.00 | 0.00 | 3.95 |
2342 | 3604 | 2.378378 | ATACCTACTCCCTCCGTTCC | 57.622 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2343 | 3605 | 1.002069 | TACCTACTCCCTCCGTTCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2344 | 3606 | 0.115745 | ACCTACTCCCTCCGTTCCAA | 59.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2345 | 3607 | 1.272807 | CCTACTCCCTCCGTTCCAAA | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2346 | 3608 | 1.626825 | CCTACTCCCTCCGTTCCAAAA | 59.373 | 52.381 | 0.00 | 0.00 | 0.00 | 2.44 |
2350 | 3612 | 2.092049 | ACTCCCTCCGTTCCAAAAACTT | 60.092 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
2382 | 3644 | 7.978975 | CAGTTTAATTGTAATATGGGTTGGTGG | 59.021 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
2383 | 3645 | 7.676468 | AGTTTAATTGTAATATGGGTTGGTGGT | 59.324 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
2384 | 3646 | 8.968969 | GTTTAATTGTAATATGGGTTGGTGGTA | 58.031 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
2385 | 3647 | 9.716556 | TTTAATTGTAATATGGGTTGGTGGTAT | 57.283 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
2386 | 3648 | 7.833285 | AATTGTAATATGGGTTGGTGGTATC | 57.167 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2387 | 3649 | 5.313280 | TGTAATATGGGTTGGTGGTATCC | 57.687 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
2388 | 3650 | 3.502123 | AATATGGGTTGGTGGTATCCG | 57.498 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
2389 | 3651 | 2.177811 | TATGGGTTGGTGGTATCCGA | 57.822 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2390 | 3652 | 1.291109 | ATGGGTTGGTGGTATCCGAA | 58.709 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2391 | 3653 | 0.616371 | TGGGTTGGTGGTATCCGAAG | 59.384 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2412 | 3674 | 3.605749 | GAGCCTTGGCGCAGTGGTA | 62.606 | 63.158 | 10.83 | 0.00 | 0.00 | 3.25 |
2413 | 3675 | 2.671619 | GCCTTGGCGCAGTGGTAA | 60.672 | 61.111 | 10.83 | 0.00 | 0.00 | 2.85 |
2414 | 3676 | 2.265182 | GCCTTGGCGCAGTGGTAAA | 61.265 | 57.895 | 10.83 | 0.00 | 0.00 | 2.01 |
2415 | 3677 | 1.875963 | CCTTGGCGCAGTGGTAAAG | 59.124 | 57.895 | 10.83 | 0.71 | 0.00 | 1.85 |
2416 | 3678 | 1.210155 | CTTGGCGCAGTGGTAAAGC | 59.790 | 57.895 | 10.83 | 0.00 | 0.00 | 3.51 |
2417 | 3679 | 1.228124 | TTGGCGCAGTGGTAAAGCT | 60.228 | 52.632 | 10.83 | 0.00 | 0.00 | 3.74 |
2418 | 3680 | 1.514678 | TTGGCGCAGTGGTAAAGCTG | 61.515 | 55.000 | 10.83 | 0.00 | 35.93 | 4.24 |
2423 | 3685 | 1.878775 | CAGTGGTAAAGCTGCTGCC | 59.121 | 57.895 | 12.44 | 7.07 | 40.80 | 4.85 |
2424 | 3686 | 0.607489 | CAGTGGTAAAGCTGCTGCCT | 60.607 | 55.000 | 12.44 | 2.45 | 40.80 | 4.75 |
2425 | 3687 | 0.111253 | AGTGGTAAAGCTGCTGCCTT | 59.889 | 50.000 | 12.44 | 8.34 | 40.80 | 4.35 |
2426 | 3688 | 0.242017 | GTGGTAAAGCTGCTGCCTTG | 59.758 | 55.000 | 12.44 | 0.00 | 40.80 | 3.61 |
2427 | 3689 | 0.178992 | TGGTAAAGCTGCTGCCTTGT | 60.179 | 50.000 | 12.44 | 0.00 | 40.80 | 3.16 |
2428 | 3690 | 0.242017 | GGTAAAGCTGCTGCCTTGTG | 59.758 | 55.000 | 12.44 | 0.00 | 40.80 | 3.33 |
2429 | 3691 | 1.238439 | GTAAAGCTGCTGCCTTGTGA | 58.762 | 50.000 | 12.44 | 0.00 | 40.80 | 3.58 |
2430 | 3692 | 1.068954 | GTAAAGCTGCTGCCTTGTGAC | 60.069 | 52.381 | 12.44 | 0.00 | 40.80 | 3.67 |
2431 | 3693 | 1.458639 | AAAGCTGCTGCCTTGTGACC | 61.459 | 55.000 | 12.44 | 0.00 | 40.80 | 4.02 |
2432 | 3694 | 2.595463 | GCTGCTGCCTTGTGACCA | 60.595 | 61.111 | 3.85 | 0.00 | 0.00 | 4.02 |
2433 | 3695 | 1.975407 | GCTGCTGCCTTGTGACCAT | 60.975 | 57.895 | 3.85 | 0.00 | 0.00 | 3.55 |
2434 | 3696 | 1.880894 | CTGCTGCCTTGTGACCATG | 59.119 | 57.895 | 0.00 | 0.00 | 0.00 | 3.66 |
2435 | 3697 | 0.607217 | CTGCTGCCTTGTGACCATGA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2436 | 3698 | 0.607217 | TGCTGCCTTGTGACCATGAG | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2437 | 3699 | 1.310933 | GCTGCCTTGTGACCATGAGG | 61.311 | 60.000 | 0.00 | 0.00 | 42.21 | 3.86 |
2452 | 3714 | 2.859165 | TGAGGTCATGGGTTCAAGTC | 57.141 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2453 | 3715 | 1.351017 | TGAGGTCATGGGTTCAAGTCC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2454 | 3716 | 1.630878 | GAGGTCATGGGTTCAAGTCCT | 59.369 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2455 | 3717 | 1.352352 | AGGTCATGGGTTCAAGTCCTG | 59.648 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2456 | 3718 | 1.614317 | GGTCATGGGTTCAAGTCCTGG | 60.614 | 57.143 | 0.00 | 0.00 | 0.00 | 4.45 |
2457 | 3719 | 1.351017 | GTCATGGGTTCAAGTCCTGGA | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
2458 | 3720 | 2.061848 | TCATGGGTTCAAGTCCTGGAA | 58.938 | 47.619 | 0.00 | 0.00 | 0.00 | 3.53 |
2459 | 3721 | 2.445145 | TCATGGGTTCAAGTCCTGGAAA | 59.555 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
2460 | 3722 | 2.358322 | TGGGTTCAAGTCCTGGAAAC | 57.642 | 50.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2461 | 3723 | 1.566703 | TGGGTTCAAGTCCTGGAAACA | 59.433 | 47.619 | 0.00 | 0.00 | 32.36 | 2.83 |
2475 | 3737 | 4.431416 | TGGAAACAGCCTCTTACAGAAA | 57.569 | 40.909 | 0.00 | 0.00 | 35.01 | 2.52 |
2476 | 3738 | 4.985538 | TGGAAACAGCCTCTTACAGAAAT | 58.014 | 39.130 | 0.00 | 0.00 | 35.01 | 2.17 |
2477 | 3739 | 4.761739 | TGGAAACAGCCTCTTACAGAAATG | 59.238 | 41.667 | 0.00 | 0.00 | 35.01 | 2.32 |
2478 | 3740 | 4.762251 | GGAAACAGCCTCTTACAGAAATGT | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 2.71 |
2479 | 3741 | 5.938125 | GGAAACAGCCTCTTACAGAAATGTA | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2480 | 3742 | 6.092807 | GGAAACAGCCTCTTACAGAAATGTAG | 59.907 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
2481 | 3743 | 5.091261 | ACAGCCTCTTACAGAAATGTAGG | 57.909 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
2482 | 3744 | 4.080863 | ACAGCCTCTTACAGAAATGTAGGG | 60.081 | 45.833 | 0.00 | 0.66 | 0.00 | 3.53 |
2483 | 3745 | 4.162320 | CAGCCTCTTACAGAAATGTAGGGA | 59.838 | 45.833 | 0.00 | 0.00 | 0.00 | 4.20 |
2484 | 3746 | 4.783227 | AGCCTCTTACAGAAATGTAGGGAA | 59.217 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
2485 | 3747 | 5.250774 | AGCCTCTTACAGAAATGTAGGGAAA | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 3.13 |
2486 | 3748 | 5.586643 | GCCTCTTACAGAAATGTAGGGAAAG | 59.413 | 44.000 | 0.00 | 0.00 | 0.00 | 2.62 |
2487 | 3749 | 6.116126 | CCTCTTACAGAAATGTAGGGAAAGG | 58.884 | 44.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2488 | 3750 | 5.497474 | TCTTACAGAAATGTAGGGAAAGGC | 58.503 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2489 | 3751 | 5.250774 | TCTTACAGAAATGTAGGGAAAGGCT | 59.749 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2490 | 3752 | 3.690460 | ACAGAAATGTAGGGAAAGGCTG | 58.310 | 45.455 | 0.00 | 0.00 | 0.00 | 4.85 |
2491 | 3753 | 2.424956 | CAGAAATGTAGGGAAAGGCTGC | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2492 | 3754 | 1.401905 | GAAATGTAGGGAAAGGCTGCG | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
2493 | 3755 | 0.328258 | AATGTAGGGAAAGGCTGCGT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
2494 | 3756 | 1.200519 | ATGTAGGGAAAGGCTGCGTA | 58.799 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
2495 | 3757 | 0.248289 | TGTAGGGAAAGGCTGCGTAC | 59.752 | 55.000 | 0.00 | 0.00 | 37.28 | 3.67 |
2496 | 3758 | 0.535797 | GTAGGGAAAGGCTGCGTACT | 59.464 | 55.000 | 0.00 | 0.00 | 34.81 | 2.73 |
2497 | 3759 | 1.753073 | GTAGGGAAAGGCTGCGTACTA | 59.247 | 52.381 | 0.00 | 0.00 | 34.81 | 1.82 |
2498 | 3760 | 1.497161 | AGGGAAAGGCTGCGTACTAT | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2499 | 3761 | 2.674420 | AGGGAAAGGCTGCGTACTATA | 58.326 | 47.619 | 0.00 | 0.00 | 0.00 | 1.31 |
2500 | 3762 | 2.628657 | AGGGAAAGGCTGCGTACTATAG | 59.371 | 50.000 | 0.00 | 0.00 | 0.00 | 1.31 |
2501 | 3763 | 2.626743 | GGGAAAGGCTGCGTACTATAGA | 59.373 | 50.000 | 6.78 | 0.00 | 0.00 | 1.98 |
2502 | 3764 | 3.552478 | GGGAAAGGCTGCGTACTATAGAC | 60.552 | 52.174 | 6.78 | 0.00 | 0.00 | 2.59 |
2503 | 3765 | 3.552478 | GGAAAGGCTGCGTACTATAGACC | 60.552 | 52.174 | 6.78 | 0.00 | 0.00 | 3.85 |
2504 | 3766 | 1.618487 | AGGCTGCGTACTATAGACCC | 58.382 | 55.000 | 6.78 | 0.00 | 0.00 | 4.46 |
2505 | 3767 | 1.133575 | AGGCTGCGTACTATAGACCCA | 60.134 | 52.381 | 6.78 | 0.00 | 0.00 | 4.51 |
2506 | 3768 | 1.684983 | GGCTGCGTACTATAGACCCAA | 59.315 | 52.381 | 6.78 | 0.00 | 0.00 | 4.12 |
2507 | 3769 | 2.101917 | GGCTGCGTACTATAGACCCAAA | 59.898 | 50.000 | 6.78 | 0.00 | 0.00 | 3.28 |
2508 | 3770 | 3.381949 | GCTGCGTACTATAGACCCAAAG | 58.618 | 50.000 | 6.78 | 0.00 | 0.00 | 2.77 |
2509 | 3771 | 3.181478 | GCTGCGTACTATAGACCCAAAGT | 60.181 | 47.826 | 6.78 | 0.00 | 0.00 | 2.66 |
2510 | 3772 | 4.360563 | CTGCGTACTATAGACCCAAAGTG | 58.639 | 47.826 | 6.78 | 0.00 | 0.00 | 3.16 |
2511 | 3773 | 3.131577 | TGCGTACTATAGACCCAAAGTGG | 59.868 | 47.826 | 6.78 | 0.00 | 37.25 | 4.00 |
2512 | 3774 | 3.131755 | GCGTACTATAGACCCAAAGTGGT | 59.868 | 47.826 | 6.78 | 0.00 | 42.79 | 4.16 |
2517 | 3779 | 4.373771 | GACCCAAAGTGGTCGGAC | 57.626 | 61.111 | 0.00 | 0.00 | 44.98 | 4.79 |
2518 | 3780 | 1.302271 | GACCCAAAGTGGTCGGACC | 60.302 | 63.158 | 20.36 | 20.36 | 44.98 | 4.46 |
2519 | 3781 | 2.033602 | CCCAAAGTGGTCGGACCC | 59.966 | 66.667 | 23.81 | 14.91 | 37.50 | 4.46 |
2520 | 3782 | 2.526046 | CCCAAAGTGGTCGGACCCT | 61.526 | 63.158 | 23.81 | 16.82 | 37.50 | 4.34 |
2521 | 3783 | 1.454539 | CCAAAGTGGTCGGACCCTT | 59.545 | 57.895 | 23.81 | 21.08 | 37.50 | 3.95 |
2522 | 3784 | 0.605589 | CCAAAGTGGTCGGACCCTTC | 60.606 | 60.000 | 23.81 | 13.97 | 37.50 | 3.46 |
2523 | 3785 | 0.605589 | CAAAGTGGTCGGACCCTTCC | 60.606 | 60.000 | 23.81 | 9.51 | 37.50 | 3.46 |
2524 | 3786 | 1.775934 | AAAGTGGTCGGACCCTTCCC | 61.776 | 60.000 | 23.81 | 7.17 | 38.99 | 3.97 |
2525 | 3787 | 2.606826 | GTGGTCGGACCCTTCCCT | 60.607 | 66.667 | 23.81 | 0.00 | 38.99 | 4.20 |
2526 | 3788 | 2.606519 | TGGTCGGACCCTTCCCTG | 60.607 | 66.667 | 23.81 | 0.00 | 38.99 | 4.45 |
2527 | 3789 | 3.400054 | GGTCGGACCCTTCCCTGG | 61.400 | 72.222 | 16.55 | 0.00 | 38.99 | 4.45 |
2528 | 3790 | 2.284405 | GTCGGACCCTTCCCTGGA | 60.284 | 66.667 | 0.00 | 0.00 | 38.99 | 3.86 |
2529 | 3791 | 2.284405 | TCGGACCCTTCCCTGGAC | 60.284 | 66.667 | 0.00 | 0.00 | 38.99 | 4.02 |
2530 | 3792 | 3.400054 | CGGACCCTTCCCTGGACC | 61.400 | 72.222 | 0.00 | 0.00 | 38.99 | 4.46 |
2531 | 3793 | 3.015753 | GGACCCTTCCCTGGACCC | 61.016 | 72.222 | 0.00 | 0.00 | 35.57 | 4.46 |
2532 | 3794 | 2.125225 | GACCCTTCCCTGGACCCT | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2533 | 3795 | 2.204151 | ACCCTTCCCTGGACCCTG | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.45 |
2534 | 3796 | 3.732849 | CCCTTCCCTGGACCCTGC | 61.733 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
2535 | 3797 | 4.101448 | CCTTCCCTGGACCCTGCG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 5.18 |
2536 | 3798 | 4.785453 | CTTCCCTGGACCCTGCGC | 62.785 | 72.222 | 0.00 | 0.00 | 0.00 | 6.09 |
2561 | 3823 | 3.558674 | GAGCTACATGCACCAGGTT | 57.441 | 52.632 | 0.00 | 0.00 | 45.94 | 3.50 |
2562 | 3824 | 1.089920 | GAGCTACATGCACCAGGTTG | 58.910 | 55.000 | 0.00 | 0.00 | 45.94 | 3.77 |
2563 | 3825 | 0.962356 | AGCTACATGCACCAGGTTGC | 60.962 | 55.000 | 8.03 | 8.03 | 44.17 | 4.17 |
2564 | 3826 | 1.937546 | GCTACATGCACCAGGTTGCC | 61.938 | 60.000 | 10.46 | 0.00 | 39.88 | 4.52 |
2565 | 3827 | 1.304052 | TACATGCACCAGGTTGCCC | 60.304 | 57.895 | 10.46 | 0.00 | 42.25 | 5.36 |
2566 | 3828 | 1.788518 | TACATGCACCAGGTTGCCCT | 61.789 | 55.000 | 10.46 | 0.00 | 42.25 | 5.19 |
2567 | 3829 | 1.909781 | CATGCACCAGGTTGCCCTT | 60.910 | 57.895 | 10.46 | 0.00 | 42.25 | 3.95 |
2568 | 3830 | 1.152269 | ATGCACCAGGTTGCCCTTT | 60.152 | 52.632 | 10.46 | 0.00 | 42.25 | 3.11 |
2569 | 3831 | 0.763986 | ATGCACCAGGTTGCCCTTTT | 60.764 | 50.000 | 10.46 | 0.00 | 42.25 | 2.27 |
2570 | 3832 | 0.980231 | TGCACCAGGTTGCCCTTTTT | 60.980 | 50.000 | 10.46 | 0.00 | 42.25 | 1.94 |
2645 | 3908 | 8.804912 | AGATTGTCATCAAAGAAGCTAAGAAT | 57.195 | 30.769 | 0.00 | 0.00 | 37.11 | 2.40 |
2773 | 4038 | 2.040178 | ACTTCCTGGTTCTTCTGACGT | 58.960 | 47.619 | 0.00 | 0.00 | 0.00 | 4.34 |
2819 | 4084 | 3.511934 | ACACTCCTAGACCAGTTCATCAC | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
2913 | 4178 | 2.158943 | GCTAACCCTCGCTATCAACCTT | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2919 | 4184 | 2.103094 | CCTCGCTATCAACCTTCCATGA | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2939 | 4204 | 1.219213 | ACCAGCTATCCTCCTGCTACT | 59.781 | 52.381 | 0.00 | 0.00 | 35.05 | 2.57 |
3002 | 4267 | 2.363683 | GCTGCATCTTTTAGACAGCCT | 58.636 | 47.619 | 1.93 | 0.00 | 46.21 | 4.58 |
3033 | 4298 | 2.023791 | TCTGTAGGGCATGGTGGTAGTA | 60.024 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3357 | 4622 | 1.709147 | CCGCCTACAGCTGCATCAAC | 61.709 | 60.000 | 15.27 | 0.00 | 40.39 | 3.18 |
3558 | 4823 | 4.901197 | TTTGCCTGGTAAGATGACACTA | 57.099 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
3567 | 4832 | 6.192044 | TGGTAAGATGACACTACTATGTGGA | 58.808 | 40.000 | 0.00 | 0.00 | 41.84 | 4.02 |
3586 | 4851 | 6.339730 | TGTGGAATCATAATTGCCAACAATC | 58.660 | 36.000 | 0.00 | 0.00 | 45.90 | 2.67 |
3588 | 4853 | 7.043565 | GTGGAATCATAATTGCCAACAATCTT | 58.956 | 34.615 | 0.00 | 0.00 | 45.90 | 2.40 |
3780 | 5045 | 1.285641 | CGCCGCAAATGAAACCACT | 59.714 | 52.632 | 0.00 | 0.00 | 0.00 | 4.00 |
3816 | 5081 | 0.465460 | GCGCCCCTCCACATTTATCA | 60.465 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
3853 | 5118 | 5.059161 | TCAGTTATATCTGCTCATTGTGCC | 58.941 | 41.667 | 8.14 | 0.00 | 35.63 | 5.01 |
3996 | 5261 | 3.648545 | AGCCTCTGATCCCCAGTAATTAC | 59.351 | 47.826 | 7.57 | 7.57 | 43.38 | 1.89 |
4022 | 5289 | 1.470098 | CGCAAGATGTCCCTCCTTTTG | 59.530 | 52.381 | 0.00 | 0.00 | 43.02 | 2.44 |
4031 | 5298 | 0.593128 | CCCTCCTTTTGCTGTTGACG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4033 | 5300 | 1.264288 | CCTCCTTTTGCTGTTGACGTC | 59.736 | 52.381 | 9.11 | 9.11 | 0.00 | 4.34 |
4099 | 5366 | 4.399395 | CCTGCCAGCTTCGCCTCA | 62.399 | 66.667 | 0.17 | 0.00 | 0.00 | 3.86 |
4201 | 5468 | 2.428925 | GCCTTGCATGGGTGATGGG | 61.429 | 63.158 | 19.47 | 0.00 | 31.99 | 4.00 |
4239 | 5506 | 2.750237 | GATGGTTGGGTCCGGTGC | 60.750 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
4275 | 5542 | 1.238439 | GTGGTGAACTCATGTGGTGG | 58.762 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
4337 | 5605 | 2.223595 | ACGTGAGAGCCGTGAGATAATG | 60.224 | 50.000 | 0.00 | 0.00 | 37.12 | 1.90 |
4423 | 5703 | 0.527817 | GCAGTCGTTATGTCCCCTCG | 60.528 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4447 | 5727 | 9.439461 | TCGGGGATTCATCTCAATAATATATCT | 57.561 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
4482 | 5763 | 6.502138 | AGATCCCAACCCTTCATTTTGAATA | 58.498 | 36.000 | 0.00 | 0.00 | 35.59 | 1.75 |
4490 | 5771 | 6.949715 | ACCCTTCATTTTGAATATTGCACAT | 58.050 | 32.000 | 0.00 | 0.00 | 35.59 | 3.21 |
4531 | 5814 | 1.168714 | GAATCCTGCACGCTTTTCCT | 58.831 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4535 | 5818 | 0.734889 | CCTGCACGCTTTTCCTATGG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4539 | 5822 | 2.290387 | TGCACGCTTTTCCTATGGGTTA | 60.290 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4558 | 5844 | 8.808240 | TGGGTTAATTACATTATACTCCCTCT | 57.192 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
4587 | 5873 | 9.349713 | TCCAAAATAAGTGTCTCAACTTTGTAT | 57.650 | 29.630 | 0.00 | 0.00 | 40.77 | 2.29 |
4625 | 5911 | 8.589629 | CAAAATTACATTAAGCTTGATGCACTC | 58.410 | 33.333 | 26.25 | 0.00 | 45.94 | 3.51 |
4633 | 5919 | 4.978083 | AGCTTGATGCACTCATTTTAGG | 57.022 | 40.909 | 0.00 | 0.00 | 45.94 | 2.69 |
4637 | 5923 | 5.735354 | GCTTGATGCACTCATTTTAGGATGG | 60.735 | 44.000 | 0.00 | 0.00 | 42.31 | 3.51 |
4639 | 5925 | 5.508567 | TGATGCACTCATTTTAGGATGGAA | 58.491 | 37.500 | 0.00 | 0.00 | 31.96 | 3.53 |
4640 | 5926 | 5.591472 | TGATGCACTCATTTTAGGATGGAAG | 59.409 | 40.000 | 0.00 | 0.00 | 31.96 | 3.46 |
4642 | 5928 | 4.018506 | TGCACTCATTTTAGGATGGAAGGA | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
4644 | 5930 | 5.749462 | CACTCATTTTAGGATGGAAGGAGT | 58.251 | 41.667 | 0.00 | 0.00 | 42.89 | 3.85 |
4645 | 5931 | 6.632672 | GCACTCATTTTAGGATGGAAGGAGTA | 60.633 | 42.308 | 2.86 | 0.00 | 40.98 | 2.59 |
4647 | 5933 | 7.995488 | CACTCATTTTAGGATGGAAGGAGTATT | 59.005 | 37.037 | 2.86 | 0.00 | 40.98 | 1.89 |
4648 | 5934 | 9.225682 | ACTCATTTTAGGATGGAAGGAGTATTA | 57.774 | 33.333 | 1.38 | 0.00 | 41.08 | 0.98 |
4722 | 6008 | 1.486310 | TCGAGGGTATGCATGCTTTCT | 59.514 | 47.619 | 20.33 | 10.75 | 0.00 | 2.52 |
4739 | 6025 | 5.238432 | TGCTTTCTGTCATGTTTCGTATGTT | 59.762 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4749 | 6035 | 5.219226 | TGTTTCGTATGTTGTTTGTTCGT | 57.781 | 34.783 | 0.00 | 0.00 | 0.00 | 3.85 |
4774 | 6062 | 5.114780 | TGCATTTACCCGTAGCGTAAATTA | 58.885 | 37.500 | 3.77 | 0.00 | 41.43 | 1.40 |
4775 | 6063 | 5.583854 | TGCATTTACCCGTAGCGTAAATTAA | 59.416 | 36.000 | 3.77 | 0.00 | 41.43 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
16 | 17 | 7.499232 | AGTGCAGTCAGTTAAAGTGATAACTTT | 59.501 | 33.333 | 12.92 | 12.92 | 42.06 | 2.66 |
68 | 69 | 7.408756 | TTCAAAGATAATGAAAGATGGTGGG | 57.591 | 36.000 | 0.00 | 0.00 | 34.04 | 4.61 |
283 | 286 | 9.185192 | CTGGTTAAAACAATCTGAAGTTTCATC | 57.815 | 33.333 | 10.65 | 4.38 | 36.98 | 2.92 |
406 | 417 | 5.537295 | TCAGTTAAGGTACAGTTACTGCTCA | 59.463 | 40.000 | 12.80 | 0.00 | 34.37 | 4.26 |
619 | 632 | 9.168451 | ACATGTCATCCTTATACTAGTCGATAG | 57.832 | 37.037 | 0.00 | 0.00 | 37.53 | 2.08 |
625 | 638 | 8.958060 | ATACCACATGTCATCCTTATACTAGT | 57.042 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
812 | 825 | 4.527038 | CAGACCTTAGAACTGTGGGAAGTA | 59.473 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
932 | 1105 | 5.244785 | TGAGGCACAGTATTAGTACTTCG | 57.755 | 43.478 | 0.00 | 0.00 | 39.12 | 3.79 |
1032 | 1205 | 4.178540 | GGTTCGTACGATCCATTCTTGAA | 58.821 | 43.478 | 31.20 | 7.08 | 34.89 | 2.69 |
1125 | 1301 | 6.391227 | ACTAAATGAGTTCACCAAAACTGG | 57.609 | 37.500 | 0.00 | 0.00 | 39.55 | 4.00 |
1301 | 1477 | 2.941583 | AAGGTTCCAGGGGCTCCC | 60.942 | 66.667 | 0.00 | 0.00 | 45.90 | 4.30 |
1391 | 1567 | 2.540101 | CGGATAGCTTAAAGAAGGCACG | 59.460 | 50.000 | 0.00 | 0.00 | 32.84 | 5.34 |
1412 | 1588 | 9.589111 | GGAATAAAACTATCCTCCGATCTATTC | 57.411 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
1413 | 1589 | 9.327731 | AGGAATAAAACTATCCTCCGATCTATT | 57.672 | 33.333 | 0.00 | 0.00 | 39.36 | 1.73 |
1414 | 1590 | 8.754080 | CAGGAATAAAACTATCCTCCGATCTAT | 58.246 | 37.037 | 0.00 | 0.00 | 41.63 | 1.98 |
1421 | 1597 | 6.464607 | GGACTCCAGGAATAAAACTATCCTCC | 60.465 | 46.154 | 0.00 | 0.00 | 41.63 | 4.30 |
1566 | 1742 | 0.681243 | GGAACAGGATTCAGGGGCAC | 60.681 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1598 | 1774 | 3.838565 | TGAACTTATTTGTGGAGGGCAA | 58.161 | 40.909 | 0.00 | 0.00 | 0.00 | 4.52 |
1799 | 1978 | 1.301716 | CCGCTGTACTGGTGCACTT | 60.302 | 57.895 | 17.98 | 4.07 | 0.00 | 3.16 |
1800 | 1979 | 2.343758 | CCGCTGTACTGGTGCACT | 59.656 | 61.111 | 17.98 | 0.00 | 0.00 | 4.40 |
1801 | 1980 | 2.725203 | TTCCCGCTGTACTGGTGCAC | 62.725 | 60.000 | 8.80 | 8.80 | 0.00 | 4.57 |
1924 | 2103 | 7.224297 | ACCAAATCTTAGCAGAAGTAGAACAA | 58.776 | 34.615 | 0.00 | 0.00 | 30.76 | 2.83 |
1953 | 2132 | 4.513406 | TTCACCTGACTACCCAAAAGTT | 57.487 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
2128 | 2308 | 0.325272 | GAAGGCTTTTCCTCCCTCGT | 59.675 | 55.000 | 0.00 | 0.00 | 46.94 | 4.18 |
2284 | 3546 | 5.760253 | CCTATGCTTGAAACTAGTGGTATGG | 59.240 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2326 | 3588 | 1.272807 | TTTGGAACGGAGGGAGTAGG | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2329 | 3591 | 1.493446 | AGTTTTTGGAACGGAGGGAGT | 59.507 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2330 | 3592 | 2.271944 | AGTTTTTGGAACGGAGGGAG | 57.728 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2331 | 3593 | 2.740506 | AAGTTTTTGGAACGGAGGGA | 57.259 | 45.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2332 | 3594 | 5.462530 | AATAAAGTTTTTGGAACGGAGGG | 57.537 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
2333 | 3595 | 5.010213 | TGGAATAAAGTTTTTGGAACGGAGG | 59.990 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2334 | 3596 | 6.079424 | TGGAATAAAGTTTTTGGAACGGAG | 57.921 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
2335 | 3597 | 5.595133 | ACTGGAATAAAGTTTTTGGAACGGA | 59.405 | 36.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2336 | 3598 | 5.838529 | ACTGGAATAAAGTTTTTGGAACGG | 58.161 | 37.500 | 0.00 | 0.00 | 0.00 | 4.44 |
2337 | 3599 | 7.764695 | AAACTGGAATAAAGTTTTTGGAACG | 57.235 | 32.000 | 0.00 | 0.00 | 43.60 | 3.95 |
2382 | 3644 | 4.297207 | AGGCTCCCCTTCGGATAC | 57.703 | 61.111 | 0.00 | 0.00 | 41.00 | 2.24 |
2394 | 3656 | 3.605749 | TACCACTGCGCCAAGGCTC | 62.606 | 63.158 | 4.18 | 1.20 | 39.32 | 4.70 |
2395 | 3657 | 2.690653 | TTTACCACTGCGCCAAGGCT | 62.691 | 55.000 | 4.18 | 0.00 | 39.32 | 4.58 |
2396 | 3658 | 2.200170 | CTTTACCACTGCGCCAAGGC | 62.200 | 60.000 | 4.18 | 0.00 | 37.85 | 4.35 |
2397 | 3659 | 1.875963 | CTTTACCACTGCGCCAAGG | 59.124 | 57.895 | 4.18 | 6.21 | 0.00 | 3.61 |
2398 | 3660 | 1.210155 | GCTTTACCACTGCGCCAAG | 59.790 | 57.895 | 4.18 | 0.00 | 0.00 | 3.61 |
2399 | 3661 | 1.228124 | AGCTTTACCACTGCGCCAA | 60.228 | 52.632 | 4.18 | 0.00 | 0.00 | 4.52 |
2400 | 3662 | 1.965930 | CAGCTTTACCACTGCGCCA | 60.966 | 57.895 | 4.18 | 0.00 | 0.00 | 5.69 |
2401 | 3663 | 2.870372 | CAGCTTTACCACTGCGCC | 59.130 | 61.111 | 4.18 | 0.00 | 0.00 | 6.53 |
2405 | 3667 | 0.607489 | AGGCAGCAGCTTTACCACTG | 60.607 | 55.000 | 0.00 | 0.00 | 41.70 | 3.66 |
2406 | 3668 | 0.111253 | AAGGCAGCAGCTTTACCACT | 59.889 | 50.000 | 0.00 | 0.00 | 38.40 | 4.00 |
2407 | 3669 | 0.242017 | CAAGGCAGCAGCTTTACCAC | 59.758 | 55.000 | 0.00 | 0.00 | 38.07 | 4.16 |
2408 | 3670 | 0.178992 | ACAAGGCAGCAGCTTTACCA | 60.179 | 50.000 | 0.00 | 0.00 | 38.07 | 3.25 |
2409 | 3671 | 0.242017 | CACAAGGCAGCAGCTTTACC | 59.758 | 55.000 | 0.00 | 0.00 | 38.07 | 2.85 |
2410 | 3672 | 1.068954 | GTCACAAGGCAGCAGCTTTAC | 60.069 | 52.381 | 0.00 | 0.00 | 38.07 | 2.01 |
2411 | 3673 | 1.238439 | GTCACAAGGCAGCAGCTTTA | 58.762 | 50.000 | 0.00 | 0.00 | 38.07 | 1.85 |
2412 | 3674 | 1.458639 | GGTCACAAGGCAGCAGCTTT | 61.459 | 55.000 | 0.00 | 0.00 | 41.17 | 3.51 |
2413 | 3675 | 1.900498 | GGTCACAAGGCAGCAGCTT | 60.900 | 57.895 | 0.00 | 0.00 | 41.70 | 3.74 |
2414 | 3676 | 2.282040 | GGTCACAAGGCAGCAGCT | 60.282 | 61.111 | 0.00 | 0.00 | 41.70 | 4.24 |
2415 | 3677 | 1.975407 | ATGGTCACAAGGCAGCAGC | 60.975 | 57.895 | 0.00 | 0.00 | 41.10 | 5.25 |
2416 | 3678 | 0.607217 | TCATGGTCACAAGGCAGCAG | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.24 |
2417 | 3679 | 0.607217 | CTCATGGTCACAAGGCAGCA | 60.607 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2418 | 3680 | 1.310933 | CCTCATGGTCACAAGGCAGC | 61.311 | 60.000 | 0.00 | 0.00 | 0.00 | 5.25 |
2419 | 3681 | 0.037303 | ACCTCATGGTCACAAGGCAG | 59.963 | 55.000 | 0.00 | 0.00 | 44.78 | 4.85 |
2420 | 3682 | 2.154139 | ACCTCATGGTCACAAGGCA | 58.846 | 52.632 | 0.00 | 0.00 | 44.78 | 4.75 |
2432 | 3694 | 2.025887 | GGACTTGAACCCATGACCTCAT | 60.026 | 50.000 | 0.00 | 0.00 | 36.96 | 2.90 |
2433 | 3695 | 1.351017 | GGACTTGAACCCATGACCTCA | 59.649 | 52.381 | 0.00 | 0.00 | 32.45 | 3.86 |
2434 | 3696 | 1.630878 | AGGACTTGAACCCATGACCTC | 59.369 | 52.381 | 0.00 | 0.00 | 37.82 | 3.85 |
2435 | 3697 | 1.352352 | CAGGACTTGAACCCATGACCT | 59.648 | 52.381 | 0.00 | 0.00 | 40.96 | 3.85 |
2436 | 3698 | 1.614317 | CCAGGACTTGAACCCATGACC | 60.614 | 57.143 | 0.00 | 0.00 | 34.29 | 4.02 |
2437 | 3699 | 1.351017 | TCCAGGACTTGAACCCATGAC | 59.649 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2438 | 3700 | 1.741028 | TCCAGGACTTGAACCCATGA | 58.259 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2439 | 3701 | 2.558359 | GTTTCCAGGACTTGAACCCATG | 59.442 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2440 | 3702 | 2.176798 | TGTTTCCAGGACTTGAACCCAT | 59.823 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
2441 | 3703 | 1.566703 | TGTTTCCAGGACTTGAACCCA | 59.433 | 47.619 | 0.00 | 0.00 | 0.00 | 4.51 |
2442 | 3704 | 2.230660 | CTGTTTCCAGGACTTGAACCC | 58.769 | 52.381 | 0.00 | 0.00 | 34.90 | 4.11 |
2443 | 3705 | 1.609072 | GCTGTTTCCAGGACTTGAACC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.62 |
2444 | 3706 | 1.609072 | GGCTGTTTCCAGGACTTGAAC | 59.391 | 52.381 | 0.00 | 0.00 | 39.22 | 3.18 |
2445 | 3707 | 1.494721 | AGGCTGTTTCCAGGACTTGAA | 59.505 | 47.619 | 0.00 | 0.00 | 39.22 | 2.69 |
2446 | 3708 | 1.072331 | GAGGCTGTTTCCAGGACTTGA | 59.928 | 52.381 | 0.00 | 0.00 | 39.22 | 3.02 |
2447 | 3709 | 1.072965 | AGAGGCTGTTTCCAGGACTTG | 59.927 | 52.381 | 0.00 | 0.00 | 39.22 | 3.16 |
2448 | 3710 | 1.439543 | AGAGGCTGTTTCCAGGACTT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.01 |
2449 | 3711 | 1.439543 | AAGAGGCTGTTTCCAGGACT | 58.560 | 50.000 | 0.00 | 0.00 | 39.22 | 3.85 |
2450 | 3712 | 2.038557 | TGTAAGAGGCTGTTTCCAGGAC | 59.961 | 50.000 | 0.90 | 0.00 | 39.22 | 3.85 |
2451 | 3713 | 2.303022 | CTGTAAGAGGCTGTTTCCAGGA | 59.697 | 50.000 | 0.90 | 0.00 | 35.89 | 3.86 |
2452 | 3714 | 2.303022 | TCTGTAAGAGGCTGTTTCCAGG | 59.697 | 50.000 | 17.71 | 5.83 | 38.67 | 4.45 |
2453 | 3715 | 3.685139 | TCTGTAAGAGGCTGTTTCCAG | 57.315 | 47.619 | 0.90 | 9.48 | 38.67 | 3.86 |
2465 | 3727 | 5.250774 | AGCCTTTCCCTACATTTCTGTAAGA | 59.749 | 40.000 | 0.00 | 0.00 | 44.68 | 2.10 |
2466 | 3728 | 5.355350 | CAGCCTTTCCCTACATTTCTGTAAG | 59.645 | 44.000 | 0.00 | 0.00 | 37.41 | 2.34 |
2467 | 3729 | 5.253330 | CAGCCTTTCCCTACATTTCTGTAA | 58.747 | 41.667 | 0.00 | 0.00 | 37.41 | 2.41 |
2468 | 3730 | 4.843728 | CAGCCTTTCCCTACATTTCTGTA | 58.156 | 43.478 | 0.00 | 0.00 | 36.79 | 2.74 |
2469 | 3731 | 3.690460 | CAGCCTTTCCCTACATTTCTGT | 58.310 | 45.455 | 0.00 | 0.00 | 39.49 | 3.41 |
2470 | 3732 | 2.424956 | GCAGCCTTTCCCTACATTTCTG | 59.575 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2471 | 3733 | 2.728007 | GCAGCCTTTCCCTACATTTCT | 58.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
2472 | 3734 | 1.401905 | CGCAGCCTTTCCCTACATTTC | 59.598 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2473 | 3735 | 1.271926 | ACGCAGCCTTTCCCTACATTT | 60.272 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
2474 | 3736 | 0.328258 | ACGCAGCCTTTCCCTACATT | 59.672 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
2475 | 3737 | 1.134491 | GTACGCAGCCTTTCCCTACAT | 60.134 | 52.381 | 0.00 | 0.00 | 0.00 | 2.29 |
2476 | 3738 | 0.248289 | GTACGCAGCCTTTCCCTACA | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2477 | 3739 | 0.535797 | AGTACGCAGCCTTTCCCTAC | 59.464 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2478 | 3740 | 2.148446 | TAGTACGCAGCCTTTCCCTA | 57.852 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2479 | 3741 | 1.497161 | ATAGTACGCAGCCTTTCCCT | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2480 | 3742 | 2.626743 | TCTATAGTACGCAGCCTTTCCC | 59.373 | 50.000 | 0.00 | 0.00 | 0.00 | 3.97 |
2481 | 3743 | 3.552478 | GGTCTATAGTACGCAGCCTTTCC | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 3.13 |
2482 | 3744 | 3.552478 | GGGTCTATAGTACGCAGCCTTTC | 60.552 | 52.174 | 0.00 | 0.00 | 0.00 | 2.62 |
2483 | 3745 | 2.364647 | GGGTCTATAGTACGCAGCCTTT | 59.635 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
2484 | 3746 | 1.962100 | GGGTCTATAGTACGCAGCCTT | 59.038 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
2485 | 3747 | 1.133575 | TGGGTCTATAGTACGCAGCCT | 60.134 | 52.381 | 13.98 | 0.00 | 35.18 | 4.58 |
2486 | 3748 | 1.325355 | TGGGTCTATAGTACGCAGCC | 58.675 | 55.000 | 13.98 | 8.23 | 35.18 | 4.85 |
2487 | 3749 | 3.181478 | ACTTTGGGTCTATAGTACGCAGC | 60.181 | 47.826 | 16.00 | 2.07 | 40.36 | 5.25 |
2488 | 3750 | 4.360563 | CACTTTGGGTCTATAGTACGCAG | 58.639 | 47.826 | 16.00 | 11.29 | 40.36 | 5.18 |
2489 | 3751 | 3.131577 | CCACTTTGGGTCTATAGTACGCA | 59.868 | 47.826 | 13.98 | 13.98 | 37.94 | 5.24 |
2490 | 3752 | 3.131755 | ACCACTTTGGGTCTATAGTACGC | 59.868 | 47.826 | 0.00 | 6.13 | 43.37 | 4.42 |
2491 | 3753 | 4.996788 | ACCACTTTGGGTCTATAGTACG | 57.003 | 45.455 | 0.00 | 0.00 | 43.37 | 3.67 |
2501 | 3763 | 2.826003 | GGGTCCGACCACTTTGGGT | 61.826 | 63.158 | 19.43 | 0.00 | 43.37 | 4.51 |
2502 | 3764 | 2.033602 | GGGTCCGACCACTTTGGG | 59.966 | 66.667 | 19.43 | 0.00 | 43.37 | 4.12 |
2503 | 3765 | 0.605589 | GAAGGGTCCGACCACTTTGG | 60.606 | 60.000 | 19.43 | 0.00 | 41.02 | 3.28 |
2504 | 3766 | 0.605589 | GGAAGGGTCCGACCACTTTG | 60.606 | 60.000 | 19.43 | 0.00 | 41.02 | 2.77 |
2505 | 3767 | 1.759236 | GGAAGGGTCCGACCACTTT | 59.241 | 57.895 | 19.43 | 9.96 | 41.02 | 2.66 |
2506 | 3768 | 2.222013 | GGGAAGGGTCCGACCACTT | 61.222 | 63.158 | 19.43 | 17.88 | 46.04 | 3.16 |
2507 | 3769 | 2.606826 | GGGAAGGGTCCGACCACT | 60.607 | 66.667 | 19.43 | 10.80 | 46.04 | 4.00 |
2508 | 3770 | 2.606826 | AGGGAAGGGTCCGACCAC | 60.607 | 66.667 | 19.43 | 8.70 | 46.04 | 4.16 |
2509 | 3771 | 2.606519 | CAGGGAAGGGTCCGACCA | 60.607 | 66.667 | 19.43 | 0.00 | 46.04 | 4.02 |
2510 | 3772 | 3.400054 | CCAGGGAAGGGTCCGACC | 61.400 | 72.222 | 9.30 | 9.30 | 46.04 | 4.79 |
2511 | 3773 | 2.284405 | TCCAGGGAAGGGTCCGAC | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.79 |
2512 | 3774 | 2.284405 | GTCCAGGGAAGGGTCCGA | 60.284 | 66.667 | 0.00 | 0.00 | 46.04 | 4.55 |
2513 | 3775 | 3.400054 | GGTCCAGGGAAGGGTCCG | 61.400 | 72.222 | 0.00 | 0.00 | 46.04 | 4.79 |
2514 | 3776 | 3.015753 | GGGTCCAGGGAAGGGTCC | 61.016 | 72.222 | 0.00 | 0.00 | 44.10 | 4.46 |
2515 | 3777 | 2.125225 | AGGGTCCAGGGAAGGGTC | 59.875 | 66.667 | 0.00 | 0.00 | 0.00 | 4.46 |
2516 | 3778 | 2.204151 | CAGGGTCCAGGGAAGGGT | 60.204 | 66.667 | 0.00 | 0.00 | 0.00 | 4.34 |
2517 | 3779 | 3.732849 | GCAGGGTCCAGGGAAGGG | 61.733 | 72.222 | 0.00 | 0.00 | 0.00 | 3.95 |
2518 | 3780 | 4.101448 | CGCAGGGTCCAGGGAAGG | 62.101 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
2519 | 3781 | 4.785453 | GCGCAGGGTCCAGGGAAG | 62.785 | 72.222 | 0.30 | 0.00 | 0.00 | 3.46 |
2531 | 3793 | 4.819761 | TAGCTCCCGCTTGCGCAG | 62.820 | 66.667 | 11.31 | 6.32 | 46.47 | 5.18 |
2534 | 3796 | 2.202932 | ATGTAGCTCCCGCTTGCG | 60.203 | 61.111 | 8.14 | 8.14 | 46.47 | 4.85 |
2535 | 3797 | 2.828128 | GCATGTAGCTCCCGCTTGC | 61.828 | 63.158 | 0.00 | 0.00 | 46.47 | 4.01 |
2536 | 3798 | 1.450134 | TGCATGTAGCTCCCGCTTG | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.01 |
2537 | 3799 | 1.450312 | GTGCATGTAGCTCCCGCTT | 60.450 | 57.895 | 0.00 | 0.00 | 46.47 | 4.68 |
2543 | 3805 | 1.089920 | CAACCTGGTGCATGTAGCTC | 58.910 | 55.000 | 14.15 | 0.00 | 45.94 | 4.09 |
2544 | 3806 | 0.962356 | GCAACCTGGTGCATGTAGCT | 60.962 | 55.000 | 14.15 | 0.00 | 44.29 | 3.32 |
2545 | 3807 | 1.508088 | GCAACCTGGTGCATGTAGC | 59.492 | 57.895 | 6.00 | 6.00 | 44.29 | 3.58 |
2546 | 3808 | 2.183409 | GGCAACCTGGTGCATGTAG | 58.817 | 57.895 | 18.44 | 0.00 | 46.81 | 2.74 |
2547 | 3809 | 4.413928 | GGCAACCTGGTGCATGTA | 57.586 | 55.556 | 18.44 | 0.00 | 46.81 | 2.29 |
2659 | 3924 | 0.620556 | GCTTCCATCTGTCCCTGGAA | 59.379 | 55.000 | 0.00 | 4.14 | 46.63 | 3.53 |
2819 | 4084 | 1.202290 | GGATAATTGTGGCCAGCGTTG | 60.202 | 52.381 | 5.11 | 0.00 | 0.00 | 4.10 |
2913 | 4178 | 1.221523 | AGGAGGATAGCTGGTCATGGA | 59.778 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2919 | 4184 | 1.219213 | AGTAGCAGGAGGATAGCTGGT | 59.781 | 52.381 | 0.00 | 0.00 | 39.30 | 4.00 |
3002 | 4267 | 1.035932 | GCCCTACAGAGACGTGCCTA | 61.036 | 60.000 | 0.00 | 0.00 | 0.00 | 3.93 |
3033 | 4298 | 3.012959 | TCCCTCATCCTTCTACTCCTTGT | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 3.16 |
3193 | 4458 | 5.758296 | TCATAAAACGCTTCAAAGAGAGTGT | 59.242 | 36.000 | 0.31 | 0.00 | 29.85 | 3.55 |
3240 | 4505 | 6.609876 | AGGATCTAATGCTTCTCTAGACTCA | 58.390 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3243 | 4508 | 6.490040 | AGTGAGGATCTAATGCTTCTCTAGAC | 59.510 | 42.308 | 0.00 | 0.00 | 34.92 | 2.59 |
3558 | 4823 | 6.606796 | TGTTGGCAATTATGATTCCACATAGT | 59.393 | 34.615 | 1.92 | 0.00 | 34.80 | 2.12 |
3586 | 4851 | 3.149196 | ACCAGGAATACAGTGCAACAAG | 58.851 | 45.455 | 0.00 | 0.00 | 41.43 | 3.16 |
3588 | 4853 | 2.949177 | ACCAGGAATACAGTGCAACA | 57.051 | 45.000 | 0.00 | 0.00 | 41.43 | 3.33 |
3780 | 5045 | 0.320374 | CGCACTACTTGGTCCCTCAA | 59.680 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3853 | 5118 | 1.225855 | TTACACAGCCAACTTGAGCG | 58.774 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
3902 | 5167 | 5.275881 | GCACGATGTTTTGAGTTCACAAAAG | 60.276 | 40.000 | 0.00 | 0.00 | 45.90 | 2.27 |
3965 | 5230 | 3.075134 | GGGGATCAGAGGCTTTGGATAAT | 59.925 | 47.826 | 5.08 | 0.00 | 0.00 | 1.28 |
3996 | 5261 | 1.067821 | GAGGGACATCTTGCGAGTAGG | 59.932 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
4014 | 5279 | 2.213499 | AGACGTCAACAGCAAAAGGAG | 58.787 | 47.619 | 19.50 | 0.00 | 0.00 | 3.69 |
4016 | 5281 | 1.070577 | CGAGACGTCAACAGCAAAAGG | 60.071 | 52.381 | 19.50 | 0.00 | 0.00 | 3.11 |
4017 | 5282 | 1.858458 | TCGAGACGTCAACAGCAAAAG | 59.142 | 47.619 | 19.50 | 0.00 | 0.00 | 2.27 |
4022 | 5289 | 1.452399 | GAAACTCGAGACGTCAACAGC | 59.548 | 52.381 | 21.68 | 0.44 | 0.00 | 4.40 |
4031 | 5298 | 6.096036 | TCAATCATGAGAAGAAACTCGAGAC | 58.904 | 40.000 | 21.68 | 9.99 | 39.49 | 3.36 |
4099 | 5366 | 2.108278 | AACCGTCCCGTTTGCTAGCT | 62.108 | 55.000 | 17.23 | 0.00 | 0.00 | 3.32 |
4161 | 5428 | 4.802563 | GCATGAAGAAATTAGAAGCAAGCC | 59.197 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
4201 | 5468 | 2.032681 | GTCAGGAGGGTGGTGCAC | 59.967 | 66.667 | 8.80 | 8.80 | 0.00 | 4.57 |
4275 | 5542 | 1.038681 | TGATCACATGCCATGGCCAC | 61.039 | 55.000 | 33.44 | 16.03 | 41.09 | 5.01 |
4337 | 5605 | 2.167861 | CGAAGCTGTAAGGCGAGCC | 61.168 | 63.158 | 5.89 | 5.89 | 35.69 | 4.70 |
4396 | 5673 | 3.131396 | GACATAACGACTGCTTATGGGG | 58.869 | 50.000 | 7.36 | 0.00 | 36.35 | 4.96 |
4423 | 5703 | 9.703892 | CGAGATATATTATTGAGATGAATCCCC | 57.296 | 37.037 | 0.00 | 0.00 | 0.00 | 4.81 |
4447 | 5727 | 1.743958 | GTTGGGATCTCGTCTTCTCGA | 59.256 | 52.381 | 0.00 | 0.00 | 38.19 | 4.04 |
4509 | 5792 | 2.094545 | GGAAAAGCGTGCAGGATTCAAT | 60.095 | 45.455 | 10.66 | 0.34 | 0.00 | 2.57 |
4517 | 5800 | 0.734889 | CCCATAGGAAAAGCGTGCAG | 59.265 | 55.000 | 0.00 | 0.00 | 33.47 | 4.41 |
4539 | 5822 | 8.331931 | TGGAACAGAGGGAGTATAATGTAATT | 57.668 | 34.615 | 0.00 | 0.00 | 41.28 | 1.40 |
4558 | 5844 | 7.639113 | AAGTTGAGACACTTATTTTGGAACA | 57.361 | 32.000 | 0.00 | 0.00 | 35.10 | 3.18 |
4561 | 5847 | 7.639113 | ACAAAGTTGAGACACTTATTTTGGA | 57.361 | 32.000 | 0.00 | 0.00 | 35.87 | 3.53 |
4606 | 5892 | 5.909621 | AATGAGTGCATCAAGCTTAATGT | 57.090 | 34.783 | 11.29 | 0.00 | 45.94 | 2.71 |
4607 | 5893 | 7.434307 | CCTAAAATGAGTGCATCAAGCTTAATG | 59.566 | 37.037 | 5.11 | 5.11 | 45.94 | 1.90 |
4609 | 5895 | 6.658816 | TCCTAAAATGAGTGCATCAAGCTTAA | 59.341 | 34.615 | 0.00 | 0.00 | 45.94 | 1.85 |
4619 | 5905 | 4.018506 | TCCTTCCATCCTAAAATGAGTGCA | 60.019 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
4625 | 5911 | 9.853177 | AGTTAATACTCCTTCCATCCTAAAATG | 57.147 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4653 | 5939 | 6.582264 | GCGAACAGACAGAGTAAGTTTTAAG | 58.418 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4654 | 5940 | 5.174398 | CGCGAACAGACAGAGTAAGTTTTAA | 59.826 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
4667 | 5953 | 0.249531 | TTAGCAACCGCGAACAGACA | 60.250 | 50.000 | 8.23 | 0.00 | 45.49 | 3.41 |
4722 | 6008 | 6.125327 | ACAAACAACATACGAAACATGACA | 57.875 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
4739 | 6025 | 3.003897 | GGGTAAATGCAGACGAACAAACA | 59.996 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
4749 | 6035 | 0.533491 | ACGCTACGGGTAAATGCAGA | 59.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |

Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.