Multiple sequence alignment - TraesCS1A01G107400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G107400 chr1A 100.000 4129 0 0 1 4129 105301520 105305648 0.000000e+00 7625.0
1 TraesCS1A01G107400 chr1A 94.030 1541 88 4 1705 3243 109416571 109415033 0.000000e+00 2333.0
2 TraesCS1A01G107400 chr1A 95.638 894 39 0 3236 4129 109414837 109413944 0.000000e+00 1435.0
3 TraesCS1A01G107400 chr1A 94.236 399 18 3 722 1117 109420567 109420171 4.570000e-169 604.0
4 TraesCS1A01G107400 chr1A 93.893 393 18 4 1353 1740 109416955 109416564 4.600000e-164 588.0
5 TraesCS1A01G107400 chr1A 93.827 243 4 1 1122 1353 109419882 109419640 5.080000e-94 355.0
6 TraesCS1A01G107400 chr1A 90.310 258 20 5 136 392 109422378 109422125 2.380000e-87 333.0
7 TraesCS1A01G107400 chr1D 93.702 2493 120 12 702 3164 78067722 78065237 0.000000e+00 3699.0
8 TraesCS1A01G107400 chr1D 88.390 646 58 6 3500 4129 78035263 78034619 0.000000e+00 761.0
9 TraesCS1A01G107400 chr1D 90.343 321 22 7 136 451 78068041 78067725 2.970000e-111 412.0
10 TraesCS1A01G107400 chr1D 90.763 249 19 3 3269 3517 78058050 78057806 3.080000e-86 329.0
11 TraesCS1A01G107400 chr1B 92.964 2075 120 8 1112 3164 121715776 121713706 0.000000e+00 3000.0
12 TraesCS1A01G107400 chr1B 89.474 646 51 7 3500 4129 121562908 121562264 0.000000e+00 800.0
13 TraesCS1A01G107400 chr1B 89.474 646 51 7 3500 4129 121712649 121712005 0.000000e+00 800.0
14 TraesCS1A01G107400 chr1B 92.308 429 18 10 702 1122 121716356 121715935 2.750000e-166 595.0
15 TraesCS1A01G107400 chr1B 93.313 329 16 5 140 464 121716681 121716355 8.030000e-132 481.0
16 TraesCS1A01G107400 chr1B 95.023 221 9 2 245 464 121564358 121564139 3.060000e-91 346.0
17 TraesCS1A01G107400 chr1B 90.551 254 14 6 702 950 121564140 121563892 1.110000e-85 327.0
18 TraesCS1A01G107400 chr3B 90.473 1711 156 4 1446 3152 736325053 736326760 0.000000e+00 2250.0
19 TraesCS1A01G107400 chr3B 90.315 1714 156 6 1446 3152 736311050 736312760 0.000000e+00 2237.0
20 TraesCS1A01G107400 chr3B 91.532 248 20 1 457 703 650648305 650648552 1.420000e-89 340.0
21 TraesCS1A01G107400 chr3B 89.773 264 24 3 462 724 12175016 12174755 6.610000e-88 335.0
22 TraesCS1A01G107400 chr3B 89.437 142 13 1 1 140 145888106 145887965 1.180000e-40 178.0
23 TraesCS1A01G107400 chr3B 86.577 149 16 3 1 147 782673548 782673402 1.190000e-35 161.0
24 TraesCS1A01G107400 chr3B 93.333 105 3 4 3154 3256 738120338 738120236 7.150000e-33 152.0
25 TraesCS1A01G107400 chr3B 83.478 115 8 5 252 356 736253607 736253720 3.400000e-16 97.1
26 TraesCS1A01G107400 chr3B 95.652 46 1 1 1384 1428 736325044 736325089 5.730000e-09 73.1
27 TraesCS1A01G107400 chr3B 87.500 56 3 3 1377 1428 736311034 736311089 1.240000e-05 62.1
28 TraesCS1A01G107400 chr3D 90.379 1715 153 8 1446 3152 554216942 554218652 0.000000e+00 2242.0
29 TraesCS1A01G107400 chr3D 89.792 1734 167 6 1428 3152 554328805 554330537 0.000000e+00 2213.0
30 TraesCS1A01G107400 chr3D 96.774 93 2 1 3158 3249 419904857 419904765 1.990000e-33 154.0
31 TraesCS1A01G107400 chr3D 96.703 91 2 1 3158 3247 185712848 185712758 2.570000e-32 150.0
32 TraesCS1A01G107400 chr3D 80.392 204 11 14 179 356 554169643 554169843 1.200000e-25 128.0
33 TraesCS1A01G107400 chr3D 94.000 50 2 1 1379 1427 554318350 554318399 1.590000e-09 75.0
34 TraesCS1A01G107400 chr3D 87.500 56 3 3 1377 1428 554216926 554216981 1.240000e-05 62.1
35 TraesCS1A01G107400 chr3A 89.683 1735 165 8 1429 3152 690785029 690786760 0.000000e+00 2200.0
36 TraesCS1A01G107400 chr3A 89.088 1732 180 7 1428 3152 690896653 690898382 0.000000e+00 2143.0
37 TraesCS1A01G107400 chr3A 91.803 244 20 0 463 706 454421291 454421048 1.420000e-89 340.0
38 TraesCS1A01G107400 chr3A 91.736 242 20 0 466 707 69101414 69101173 1.840000e-88 337.0
39 TraesCS1A01G107400 chr3A 79.512 205 11 14 178 356 690795542 690795741 2.610000e-22 117.0
40 TraesCS1A01G107400 chr3A 76.190 189 20 14 178 342 690884580 690884767 4.430000e-10 76.8
41 TraesCS1A01G107400 chr2B 89.888 267 24 3 440 703 400605649 400605915 1.420000e-89 340.0
42 TraesCS1A01G107400 chr2B 89.437 142 13 1 1 140 87505701 87505842 1.180000e-40 178.0
43 TraesCS1A01G107400 chr4A 91.463 246 21 0 460 705 250523960 250524205 5.110000e-89 339.0
44 TraesCS1A01G107400 chr2A 91.200 250 21 1 462 710 753083404 753083155 5.110000e-89 339.0
45 TraesCS1A01G107400 chr2A 89.773 264 24 3 460 722 84977526 84977787 6.610000e-88 335.0
46 TraesCS1A01G107400 chr6A 90.800 250 23 0 456 705 98181081 98181330 6.610000e-88 335.0
47 TraesCS1A01G107400 chr6A 89.404 151 13 2 1 149 107700460 107700609 1.960000e-43 187.0
48 TraesCS1A01G107400 chr6A 89.855 138 12 1 1 136 2967133 2966996 4.240000e-40 176.0
49 TraesCS1A01G107400 chr6A 91.509 106 6 3 3144 3247 606117507 606117611 4.300000e-30 143.0
50 TraesCS1A01G107400 chr7A 89.437 142 13 1 1 140 21257795 21257654 1.180000e-40 178.0
51 TraesCS1A01G107400 chr7A 89.362 141 13 1 1 139 110078264 110078404 4.240000e-40 176.0
52 TraesCS1A01G107400 chr6D 88.811 143 13 3 1 140 462055159 462055301 5.490000e-39 172.0
53 TraesCS1A01G107400 chr6D 95.789 95 2 2 3161 3254 4701405 4701312 7.150000e-33 152.0
54 TraesCS1A01G107400 chr6D 96.667 90 2 1 3158 3246 386932113 386932202 9.250000e-32 148.0
55 TraesCS1A01G107400 chr4D 88.732 142 14 1 1 140 379701242 379701383 5.490000e-39 172.0
56 TraesCS1A01G107400 chr5D 95.876 97 2 2 3160 3255 29115605 29115700 5.530000e-34 156.0
57 TraesCS1A01G107400 chr4B 97.778 90 1 1 3160 3248 147077001 147076912 1.990000e-33 154.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G107400 chr1A 105301520 105305648 4128 False 7625.000000 7625 100.000000 1 4129 1 chr1A.!!$F1 4128
1 TraesCS1A01G107400 chr1A 109413944 109422378 8434 True 941.333333 2333 93.655667 136 4129 6 chr1A.!!$R1 3993
2 TraesCS1A01G107400 chr1D 78065237 78068041 2804 True 2055.500000 3699 92.022500 136 3164 2 chr1D.!!$R3 3028
3 TraesCS1A01G107400 chr1D 78034619 78035263 644 True 761.000000 761 88.390000 3500 4129 1 chr1D.!!$R1 629
4 TraesCS1A01G107400 chr1B 121712005 121716681 4676 True 1219.000000 3000 92.014750 140 4129 4 chr1B.!!$R2 3989
5 TraesCS1A01G107400 chr1B 121562264 121564358 2094 True 491.000000 800 91.682667 245 4129 3 chr1B.!!$R1 3884
6 TraesCS1A01G107400 chr3B 736325044 736326760 1716 False 1161.550000 2250 93.062500 1384 3152 2 chr3B.!!$F4 1768
7 TraesCS1A01G107400 chr3B 736311034 736312760 1726 False 1149.550000 2237 88.907500 1377 3152 2 chr3B.!!$F3 1775
8 TraesCS1A01G107400 chr3D 554328805 554330537 1732 False 2213.000000 2213 89.792000 1428 3152 1 chr3D.!!$F3 1724
9 TraesCS1A01G107400 chr3D 554216926 554218652 1726 False 1152.050000 2242 88.939500 1377 3152 2 chr3D.!!$F4 1775
10 TraesCS1A01G107400 chr3A 690785029 690786760 1731 False 2200.000000 2200 89.683000 1429 3152 1 chr3A.!!$F1 1723
11 TraesCS1A01G107400 chr3A 690896653 690898382 1729 False 2143.000000 2143 89.088000 1428 3152 1 chr3A.!!$F4 1724

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.035598 TGTGGTGGGTGTACCGATTG 59.964 55.0 0.00 0.00 43.87 2.67 F
120 121 0.165944 GTTTCACTCCCGATGCAACG 59.834 55.0 9.71 9.71 0.00 4.10 F
1911 6596 0.249489 ATAAGAGGATGCACGACGGC 60.249 55.0 0.00 0.10 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 6642 0.037790 GAGCAGTTCTTGAGGTCGCT 60.038 55.000 0.00 0.0 0.00 4.93 R
1986 6671 1.181786 CAAGGACGAAGCTCTCCTCT 58.818 55.000 7.78 0.0 35.72 3.69 R
3680 9408 3.550820 TGCTGAGTTTGCACCTTAAGAA 58.449 40.909 3.36 0.0 35.31 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.688637 TGTCTAAAATGCCATGATCAGAAG 57.311 37.500 0.09 0.00 0.00 2.85
25 26 5.066893 TGTCTAAAATGCCATGATCAGAAGC 59.933 40.000 0.09 4.49 0.00 3.86
26 27 5.298777 GTCTAAAATGCCATGATCAGAAGCT 59.701 40.000 13.59 0.00 0.00 3.74
27 28 4.386867 AAAATGCCATGATCAGAAGCTG 57.613 40.909 13.59 1.79 0.00 4.24
28 29 2.730934 ATGCCATGATCAGAAGCTGT 57.269 45.000 13.59 2.82 32.61 4.40
29 30 1.746470 TGCCATGATCAGAAGCTGTG 58.254 50.000 13.59 0.49 32.61 3.66
30 31 1.022735 GCCATGATCAGAAGCTGTGG 58.977 55.000 0.09 3.07 32.61 4.17
31 32 1.681166 GCCATGATCAGAAGCTGTGGT 60.681 52.381 10.22 0.00 29.96 4.16
32 33 2.014857 CCATGATCAGAAGCTGTGGTG 58.985 52.381 0.09 0.00 32.61 4.17
33 34 2.014857 CATGATCAGAAGCTGTGGTGG 58.985 52.381 0.09 0.00 32.61 4.61
34 35 0.325933 TGATCAGAAGCTGTGGTGGG 59.674 55.000 0.00 0.00 32.61 4.61
35 36 0.326264 GATCAGAAGCTGTGGTGGGT 59.674 55.000 0.00 0.00 32.61 4.51
36 37 0.037303 ATCAGAAGCTGTGGTGGGTG 59.963 55.000 0.00 0.00 32.61 4.61
37 38 1.149174 CAGAAGCTGTGGTGGGTGT 59.851 57.895 0.00 0.00 0.00 4.16
38 39 0.396435 CAGAAGCTGTGGTGGGTGTA 59.604 55.000 0.00 0.00 0.00 2.90
39 40 0.396811 AGAAGCTGTGGTGGGTGTAC 59.603 55.000 0.00 0.00 0.00 2.90
40 41 0.605589 GAAGCTGTGGTGGGTGTACC 60.606 60.000 0.00 0.00 41.24 3.34
41 42 2.358247 GCTGTGGTGGGTGTACCG 60.358 66.667 0.00 0.00 43.87 4.02
42 43 2.874664 GCTGTGGTGGGTGTACCGA 61.875 63.158 0.00 0.00 43.87 4.69
43 44 1.980052 CTGTGGTGGGTGTACCGAT 59.020 57.895 0.00 0.00 43.87 4.18
44 45 0.323629 CTGTGGTGGGTGTACCGATT 59.676 55.000 0.00 0.00 43.87 3.34
45 46 0.035598 TGTGGTGGGTGTACCGATTG 59.964 55.000 0.00 0.00 43.87 2.67
46 47 0.322322 GTGGTGGGTGTACCGATTGA 59.678 55.000 0.00 0.00 43.87 2.57
47 48 0.322322 TGGTGGGTGTACCGATTGAC 59.678 55.000 0.00 0.00 43.87 3.18
48 49 0.611714 GGTGGGTGTACCGATTGACT 59.388 55.000 0.00 0.00 44.64 3.41
49 50 1.405121 GGTGGGTGTACCGATTGACTC 60.405 57.143 0.00 0.00 44.64 3.36
50 51 1.549170 GTGGGTGTACCGATTGACTCT 59.451 52.381 0.00 0.00 44.64 3.24
51 52 2.028385 GTGGGTGTACCGATTGACTCTT 60.028 50.000 0.00 0.00 44.64 2.85
52 53 3.194116 GTGGGTGTACCGATTGACTCTTA 59.806 47.826 0.00 0.00 44.64 2.10
53 54 4.028131 TGGGTGTACCGATTGACTCTTAT 58.972 43.478 0.00 0.00 44.64 1.73
54 55 4.468510 TGGGTGTACCGATTGACTCTTATT 59.531 41.667 0.00 0.00 44.64 1.40
55 56 5.657745 TGGGTGTACCGATTGACTCTTATTA 59.342 40.000 0.00 0.00 44.64 0.98
56 57 5.981915 GGGTGTACCGATTGACTCTTATTAC 59.018 44.000 0.00 0.00 36.71 1.89
57 58 6.406177 GGGTGTACCGATTGACTCTTATTACA 60.406 42.308 0.00 0.00 36.71 2.41
58 59 7.208080 GGTGTACCGATTGACTCTTATTACAT 58.792 38.462 0.00 0.00 0.00 2.29
59 60 7.169308 GGTGTACCGATTGACTCTTATTACATG 59.831 40.741 0.00 0.00 0.00 3.21
60 61 7.919091 GTGTACCGATTGACTCTTATTACATGA 59.081 37.037 0.00 0.00 0.00 3.07
61 62 7.919091 TGTACCGATTGACTCTTATTACATGAC 59.081 37.037 0.00 0.00 0.00 3.06
62 63 7.113658 ACCGATTGACTCTTATTACATGACT 57.886 36.000 0.00 0.00 0.00 3.41
63 64 8.234136 ACCGATTGACTCTTATTACATGACTA 57.766 34.615 0.00 0.00 0.00 2.59
64 65 8.861086 ACCGATTGACTCTTATTACATGACTAT 58.139 33.333 0.00 0.00 0.00 2.12
65 66 9.698309 CCGATTGACTCTTATTACATGACTATT 57.302 33.333 0.00 0.00 0.00 1.73
89 90 9.942526 ATTCCTAAGATTGATTCTTATTGGGTT 57.057 29.630 0.00 0.00 44.12 4.11
92 93 9.289782 CCTAAGATTGATTCTTATTGGGTTAGG 57.710 37.037 0.00 0.00 44.12 2.69
93 94 9.289782 CTAAGATTGATTCTTATTGGGTTAGGG 57.710 37.037 0.00 0.00 44.12 3.53
94 95 6.614657 AGATTGATTCTTATTGGGTTAGGGG 58.385 40.000 0.00 0.00 0.00 4.79
95 96 4.178956 TGATTCTTATTGGGTTAGGGGC 57.821 45.455 0.00 0.00 0.00 5.80
96 97 3.529734 TGATTCTTATTGGGTTAGGGGCA 59.470 43.478 0.00 0.00 0.00 5.36
97 98 4.169856 TGATTCTTATTGGGTTAGGGGCAT 59.830 41.667 0.00 0.00 0.00 4.40
98 99 3.593442 TCTTATTGGGTTAGGGGCATG 57.407 47.619 0.00 0.00 0.00 4.06
99 100 1.963515 CTTATTGGGTTAGGGGCATGC 59.036 52.381 9.90 9.90 0.00 4.06
100 101 0.179004 TATTGGGTTAGGGGCATGCG 60.179 55.000 12.44 0.00 0.00 4.73
101 102 2.927201 ATTGGGTTAGGGGCATGCGG 62.927 60.000 12.44 0.00 0.00 5.69
102 103 4.123545 GGGTTAGGGGCATGCGGT 62.124 66.667 12.44 0.55 0.00 5.68
103 104 2.044352 GGTTAGGGGCATGCGGTT 60.044 61.111 12.44 1.45 0.00 4.44
104 105 1.680989 GGTTAGGGGCATGCGGTTT 60.681 57.895 12.44 0.00 0.00 3.27
105 106 1.663379 GGTTAGGGGCATGCGGTTTC 61.663 60.000 12.44 0.00 0.00 2.78
106 107 0.963355 GTTAGGGGCATGCGGTTTCA 60.963 55.000 12.44 0.00 0.00 2.69
107 108 0.963355 TTAGGGGCATGCGGTTTCAC 60.963 55.000 12.44 0.00 0.00 3.18
108 109 1.847798 TAGGGGCATGCGGTTTCACT 61.848 55.000 12.44 6.23 0.00 3.41
109 110 2.700773 GGGGCATGCGGTTTCACTC 61.701 63.158 12.44 0.00 0.00 3.51
110 111 2.700773 GGGCATGCGGTTTCACTCC 61.701 63.158 12.44 0.00 0.00 3.85
111 112 2.700773 GGCATGCGGTTTCACTCCC 61.701 63.158 12.44 0.00 0.00 4.30
112 113 3.039202 GCATGCGGTTTCACTCCCG 62.039 63.158 0.00 0.00 46.90 5.14
117 118 4.713946 GGTTTCACTCCCGATGCA 57.286 55.556 0.00 0.00 0.00 3.96
118 119 2.941210 GGTTTCACTCCCGATGCAA 58.059 52.632 0.00 0.00 0.00 4.08
119 120 0.521735 GGTTTCACTCCCGATGCAAC 59.478 55.000 0.00 0.00 0.00 4.17
120 121 0.165944 GTTTCACTCCCGATGCAACG 59.834 55.000 9.71 9.71 0.00 4.10
121 122 1.573829 TTTCACTCCCGATGCAACGC 61.574 55.000 11.32 0.00 0.00 4.84
122 123 2.723586 TTCACTCCCGATGCAACGCA 62.724 55.000 11.32 0.00 44.86 5.24
123 124 2.742372 ACTCCCGATGCAACGCAC 60.742 61.111 11.32 0.00 43.04 5.34
124 125 3.853330 CTCCCGATGCAACGCACG 61.853 66.667 11.32 0.54 43.04 5.34
125 126 4.365505 TCCCGATGCAACGCACGA 62.366 61.111 11.32 3.04 43.04 4.35
126 127 3.853330 CCCGATGCAACGCACGAG 61.853 66.667 11.32 0.00 43.04 4.18
127 128 3.112075 CCGATGCAACGCACGAGT 61.112 61.111 11.32 0.00 43.04 4.18
128 129 2.391821 CGATGCAACGCACGAGTC 59.608 61.111 2.61 0.00 43.04 3.36
129 130 2.088763 CGATGCAACGCACGAGTCT 61.089 57.895 2.61 0.00 43.04 3.24
130 131 1.617755 CGATGCAACGCACGAGTCTT 61.618 55.000 2.61 0.00 43.04 3.01
131 132 0.512952 GATGCAACGCACGAGTCTTT 59.487 50.000 0.00 0.00 43.04 2.52
132 133 0.944386 ATGCAACGCACGAGTCTTTT 59.056 45.000 0.00 0.00 43.04 2.27
133 134 0.730265 TGCAACGCACGAGTCTTTTT 59.270 45.000 0.00 0.00 31.71 1.94
134 135 1.112459 GCAACGCACGAGTCTTTTTG 58.888 50.000 0.00 0.00 0.00 2.44
138 139 1.792949 ACGCACGAGTCTTTTTGCTAG 59.207 47.619 0.00 0.00 32.56 3.42
172 173 0.737219 AAAGATACTCCGTCCGTCCG 59.263 55.000 0.00 0.00 0.00 4.79
189 190 0.618458 CCGTCCCTCTTTTGATCCCA 59.382 55.000 0.00 0.00 0.00 4.37
208 209 1.219522 ACGTTAACTCAGTGCGCACC 61.220 55.000 35.51 18.54 0.00 5.01
276 279 2.668279 GCCGCGATTGACTTTGTCATTT 60.668 45.455 8.23 0.00 42.40 2.32
280 283 4.911610 CGCGATTGACTTTGTCATTTTCTT 59.088 37.500 0.00 0.00 42.40 2.52
369 375 3.671928 GCAACGAAAGATAGTGTACGTGT 59.328 43.478 0.00 0.00 34.36 4.49
423 840 1.002544 CGGTCTTTCCTTGAAGCCTCT 59.997 52.381 0.00 0.00 0.00 3.69
450 867 1.398958 GCTCTAGCCACTAGCCAGCT 61.399 60.000 6.92 6.92 45.47 4.24
470 887 5.319140 GCTTAGCTAGCTAATACTCCCTC 57.681 47.826 31.95 13.28 46.77 4.30
471 888 4.158949 GCTTAGCTAGCTAATACTCCCTCC 59.841 50.000 31.95 11.94 46.77 4.30
472 889 3.905493 AGCTAGCTAATACTCCCTCCA 57.095 47.619 17.69 0.00 0.00 3.86
473 890 4.412060 AGCTAGCTAATACTCCCTCCAT 57.588 45.455 17.69 0.00 0.00 3.41
474 891 4.757692 AGCTAGCTAATACTCCCTCCATT 58.242 43.478 17.69 0.00 0.00 3.16
475 892 5.158889 AGCTAGCTAATACTCCCTCCATTT 58.841 41.667 17.69 0.00 0.00 2.32
476 893 5.247337 AGCTAGCTAATACTCCCTCCATTTC 59.753 44.000 17.69 0.00 0.00 2.17
477 894 5.012148 GCTAGCTAATACTCCCTCCATTTCA 59.988 44.000 7.70 0.00 0.00 2.69
478 895 5.297569 AGCTAATACTCCCTCCATTTCAC 57.702 43.478 0.00 0.00 0.00 3.18
479 896 4.721776 AGCTAATACTCCCTCCATTTCACA 59.278 41.667 0.00 0.00 0.00 3.58
480 897 5.191722 AGCTAATACTCCCTCCATTTCACAA 59.808 40.000 0.00 0.00 0.00 3.33
481 898 5.297029 GCTAATACTCCCTCCATTTCACAAC 59.703 44.000 0.00 0.00 0.00 3.32
482 899 2.185004 ACTCCCTCCATTTCACAACG 57.815 50.000 0.00 0.00 0.00 4.10
483 900 1.420138 ACTCCCTCCATTTCACAACGT 59.580 47.619 0.00 0.00 0.00 3.99
484 901 2.635915 ACTCCCTCCATTTCACAACGTA 59.364 45.455 0.00 0.00 0.00 3.57
485 902 3.262420 CTCCCTCCATTTCACAACGTAG 58.738 50.000 0.00 0.00 0.00 3.51
487 904 3.833650 TCCCTCCATTTCACAACGTAGTA 59.166 43.478 0.00 0.00 45.00 1.82
488 905 3.930848 CCCTCCATTTCACAACGTAGTAC 59.069 47.826 0.00 0.00 45.00 2.73
489 906 4.322499 CCCTCCATTTCACAACGTAGTACT 60.322 45.833 0.00 0.00 45.00 2.73
490 907 5.235516 CCTCCATTTCACAACGTAGTACTT 58.764 41.667 0.00 0.00 45.00 2.24
491 908 5.699458 CCTCCATTTCACAACGTAGTACTTT 59.301 40.000 0.00 0.00 45.00 2.66
492 909 6.128634 CCTCCATTTCACAACGTAGTACTTTC 60.129 42.308 0.00 0.00 45.00 2.62
493 910 6.518493 TCCATTTCACAACGTAGTACTTTCT 58.482 36.000 0.00 0.00 45.00 2.52
494 911 6.987992 TCCATTTCACAACGTAGTACTTTCTT 59.012 34.615 0.00 0.00 45.00 2.52
495 912 7.496591 TCCATTTCACAACGTAGTACTTTCTTT 59.503 33.333 0.00 0.00 45.00 2.52
496 913 8.767085 CCATTTCACAACGTAGTACTTTCTTTA 58.233 33.333 0.00 0.00 45.00 1.85
499 916 9.754382 TTTCACAACGTAGTACTTTCTTTATCT 57.246 29.630 0.00 0.00 45.00 1.98
500 917 8.961294 TCACAACGTAGTACTTTCTTTATCTC 57.039 34.615 0.00 0.00 45.00 2.75
501 918 8.790718 TCACAACGTAGTACTTTCTTTATCTCT 58.209 33.333 0.00 0.00 45.00 3.10
502 919 8.851416 CACAACGTAGTACTTTCTTTATCTCTG 58.149 37.037 0.00 0.00 45.00 3.35
503 920 8.574737 ACAACGTAGTACTTTCTTTATCTCTGT 58.425 33.333 0.00 0.00 45.00 3.41
504 921 8.851416 CAACGTAGTACTTTCTTTATCTCTGTG 58.149 37.037 0.00 0.00 45.00 3.66
505 922 7.028361 ACGTAGTACTTTCTTTATCTCTGTGC 58.972 38.462 0.00 0.00 41.94 4.57
506 923 7.094291 ACGTAGTACTTTCTTTATCTCTGTGCT 60.094 37.037 0.00 0.00 41.94 4.40
507 924 7.755822 CGTAGTACTTTCTTTATCTCTGTGCTT 59.244 37.037 0.00 0.00 0.00 3.91
508 925 9.078753 GTAGTACTTTCTTTATCTCTGTGCTTC 57.921 37.037 0.00 0.00 0.00 3.86
509 926 7.671302 AGTACTTTCTTTATCTCTGTGCTTCA 58.329 34.615 0.00 0.00 0.00 3.02
510 927 8.150945 AGTACTTTCTTTATCTCTGTGCTTCAA 58.849 33.333 0.00 0.00 0.00 2.69
511 928 7.195839 ACTTTCTTTATCTCTGTGCTTCAAC 57.804 36.000 0.00 0.00 0.00 3.18
512 929 6.995091 ACTTTCTTTATCTCTGTGCTTCAACT 59.005 34.615 0.00 0.00 0.00 3.16
513 930 7.500559 ACTTTCTTTATCTCTGTGCTTCAACTT 59.499 33.333 0.00 0.00 0.00 2.66
514 931 7.807977 TTCTTTATCTCTGTGCTTCAACTTT 57.192 32.000 0.00 0.00 0.00 2.66
515 932 7.194607 TCTTTATCTCTGTGCTTCAACTTTG 57.805 36.000 0.00 0.00 0.00 2.77
516 933 6.992123 TCTTTATCTCTGTGCTTCAACTTTGA 59.008 34.615 0.00 0.00 34.92 2.69
517 934 6.545504 TTATCTCTGTGCTTCAACTTTGAC 57.454 37.500 0.00 0.00 36.83 3.18
518 935 3.206150 TCTCTGTGCTTCAACTTTGACC 58.794 45.455 0.00 0.00 36.83 4.02
519 936 1.939934 TCTGTGCTTCAACTTTGACCG 59.060 47.619 0.00 0.00 36.83 4.79
520 937 1.670811 CTGTGCTTCAACTTTGACCGT 59.329 47.619 0.00 0.00 36.83 4.83
521 938 2.869801 CTGTGCTTCAACTTTGACCGTA 59.130 45.455 0.00 0.00 36.83 4.02
522 939 3.271729 TGTGCTTCAACTTTGACCGTAA 58.728 40.909 0.00 0.00 36.83 3.18
523 940 3.690139 TGTGCTTCAACTTTGACCGTAAA 59.310 39.130 0.00 0.00 36.83 2.01
524 941 4.336993 TGTGCTTCAACTTTGACCGTAAAT 59.663 37.500 0.00 0.00 36.83 1.40
525 942 5.163602 TGTGCTTCAACTTTGACCGTAAATT 60.164 36.000 0.00 0.00 36.83 1.82
526 943 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
527 944 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
528 945 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
529 946 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
530 947 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
550 967 9.891828 TTTAACTATTAATATTGATTGCAGCGG 57.108 29.630 0.00 0.00 0.00 5.52
551 968 6.500684 ACTATTAATATTGATTGCAGCGGG 57.499 37.500 0.00 0.00 0.00 6.13
552 969 6.237901 ACTATTAATATTGATTGCAGCGGGA 58.762 36.000 0.00 0.00 0.00 5.14
553 970 5.633830 ATTAATATTGATTGCAGCGGGAG 57.366 39.130 0.00 0.00 0.00 4.30
574 991 9.480053 CGGGAGCAAAAATTATATCAATGAATT 57.520 29.630 0.00 0.00 0.00 2.17
623 1040 2.112297 TTTTTCTCCCGCCGCAGT 59.888 55.556 0.00 0.00 0.00 4.40
624 1041 1.527380 TTTTTCTCCCGCCGCAGTT 60.527 52.632 0.00 0.00 0.00 3.16
625 1042 1.791103 TTTTTCTCCCGCCGCAGTTG 61.791 55.000 0.00 0.00 0.00 3.16
626 1043 4.697756 TTCTCCCGCCGCAGTTGG 62.698 66.667 0.00 0.00 0.00 3.77
633 1050 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
634 1051 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
635 1052 1.300620 CCGCAGTTGGTCTCGTTGA 60.301 57.895 0.00 0.00 0.00 3.18
636 1053 0.670546 CCGCAGTTGGTCTCGTTGAT 60.671 55.000 0.00 0.00 0.00 2.57
637 1054 1.148310 CGCAGTTGGTCTCGTTGATT 58.852 50.000 0.00 0.00 0.00 2.57
638 1055 2.333926 CGCAGTTGGTCTCGTTGATTA 58.666 47.619 0.00 0.00 0.00 1.75
639 1056 2.734606 CGCAGTTGGTCTCGTTGATTAA 59.265 45.455 0.00 0.00 0.00 1.40
640 1057 3.185594 CGCAGTTGGTCTCGTTGATTAAA 59.814 43.478 0.00 0.00 0.00 1.52
641 1058 4.142902 CGCAGTTGGTCTCGTTGATTAAAT 60.143 41.667 0.00 0.00 0.00 1.40
642 1059 5.616866 CGCAGTTGGTCTCGTTGATTAAATT 60.617 40.000 0.00 0.00 0.00 1.82
643 1060 6.149633 GCAGTTGGTCTCGTTGATTAAATTT 58.850 36.000 0.00 0.00 0.00 1.82
644 1061 7.302524 GCAGTTGGTCTCGTTGATTAAATTTA 58.697 34.615 0.00 0.00 0.00 1.40
645 1062 7.968405 GCAGTTGGTCTCGTTGATTAAATTTAT 59.032 33.333 0.00 0.00 0.00 1.40
646 1063 9.277565 CAGTTGGTCTCGTTGATTAAATTTATG 57.722 33.333 0.00 0.00 0.00 1.90
647 1064 8.458843 AGTTGGTCTCGTTGATTAAATTTATGG 58.541 33.333 0.00 0.00 0.00 2.74
648 1065 7.931578 TGGTCTCGTTGATTAAATTTATGGT 57.068 32.000 0.00 0.00 0.00 3.55
649 1066 8.343168 TGGTCTCGTTGATTAAATTTATGGTT 57.657 30.769 0.00 0.00 0.00 3.67
650 1067 9.451002 TGGTCTCGTTGATTAAATTTATGGTTA 57.549 29.630 0.00 0.00 0.00 2.85
663 1080 6.753107 ATTTATGGTTAAAGTTGGACCTCG 57.247 37.500 8.80 0.00 34.52 4.63
664 1081 2.554370 TGGTTAAAGTTGGACCTCGG 57.446 50.000 8.80 0.00 34.52 4.63
665 1082 2.048601 TGGTTAAAGTTGGACCTCGGA 58.951 47.619 8.80 0.00 34.52 4.55
666 1083 2.438763 TGGTTAAAGTTGGACCTCGGAA 59.561 45.455 8.80 0.00 34.52 4.30
667 1084 3.117963 TGGTTAAAGTTGGACCTCGGAAA 60.118 43.478 8.80 0.00 34.52 3.13
668 1085 3.501062 GGTTAAAGTTGGACCTCGGAAAG 59.499 47.826 0.00 0.00 0.00 2.62
669 1086 1.605753 AAAGTTGGACCTCGGAAAGC 58.394 50.000 0.00 0.00 0.00 3.51
670 1087 0.602905 AAGTTGGACCTCGGAAAGCG 60.603 55.000 0.00 0.00 0.00 4.68
671 1088 2.358247 TTGGACCTCGGAAAGCGC 60.358 61.111 0.00 0.00 0.00 5.92
672 1089 4.735132 TGGACCTCGGAAAGCGCG 62.735 66.667 0.00 0.00 0.00 6.86
681 1098 2.202650 GAAAGCGCGGGCGTACTA 60.203 61.111 19.46 0.00 46.35 1.82
682 1099 1.590792 GAAAGCGCGGGCGTACTAT 60.591 57.895 19.46 0.00 46.35 2.12
683 1100 0.318107 GAAAGCGCGGGCGTACTATA 60.318 55.000 19.46 0.00 46.35 1.31
684 1101 0.316204 AAAGCGCGGGCGTACTATAT 59.684 50.000 19.46 0.00 46.35 0.86
685 1102 0.316204 AAGCGCGGGCGTACTATATT 59.684 50.000 19.46 1.96 46.35 1.28
686 1103 0.316204 AGCGCGGGCGTACTATATTT 59.684 50.000 19.46 0.00 46.35 1.40
687 1104 1.142474 GCGCGGGCGTACTATATTTT 58.858 50.000 9.31 0.00 42.09 1.82
688 1105 1.136446 GCGCGGGCGTACTATATTTTG 60.136 52.381 9.31 0.00 42.09 2.44
689 1106 2.396601 CGCGGGCGTACTATATTTTGA 58.603 47.619 4.64 0.00 34.35 2.69
690 1107 2.796031 CGCGGGCGTACTATATTTTGAA 59.204 45.455 4.64 0.00 34.35 2.69
691 1108 3.245754 CGCGGGCGTACTATATTTTGAAA 59.754 43.478 4.64 0.00 34.35 2.69
692 1109 4.084223 CGCGGGCGTACTATATTTTGAAAT 60.084 41.667 4.64 0.00 34.35 2.17
693 1110 5.144359 GCGGGCGTACTATATTTTGAAATG 58.856 41.667 0.00 0.00 0.00 2.32
694 1111 5.685841 CGGGCGTACTATATTTTGAAATGG 58.314 41.667 0.00 0.00 0.00 3.16
695 1112 5.467399 CGGGCGTACTATATTTTGAAATGGA 59.533 40.000 0.00 0.00 0.00 3.41
696 1113 6.347402 CGGGCGTACTATATTTTGAAATGGAG 60.347 42.308 0.00 0.06 0.00 3.86
697 1114 6.072673 GGGCGTACTATATTTTGAAATGGAGG 60.073 42.308 0.00 0.00 0.00 4.30
698 1115 6.072673 GGCGTACTATATTTTGAAATGGAGGG 60.073 42.308 0.00 0.00 0.00 4.30
699 1116 6.708949 GCGTACTATATTTTGAAATGGAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
700 1117 7.095187 GCGTACTATATTTTGAAATGGAGGGAG 60.095 40.741 0.00 0.00 0.00 4.30
701 1118 7.931948 CGTACTATATTTTGAAATGGAGGGAGT 59.068 37.037 0.00 0.00 0.00 3.85
715 1132 4.161102 GGAGGGAGTAGTAATAGCCATGT 58.839 47.826 0.00 0.00 0.00 3.21
732 1720 7.672983 AGCCATGTATTGTACTATATTGCAC 57.327 36.000 0.32 0.00 0.00 4.57
789 2269 1.279496 AGTGATCTACTGGGCTTGCA 58.721 50.000 0.00 0.00 38.49 4.08
880 2361 1.448893 GTTGGATGCCGACGCCTTA 60.449 57.895 0.00 0.00 0.00 2.69
884 2365 3.733344 GATGCCGACGCCTTAGCCA 62.733 63.158 0.00 0.00 34.57 4.75
889 2370 1.658717 CGACGCCTTAGCCATCGAG 60.659 63.158 0.00 0.00 43.43 4.04
890 2371 1.437986 GACGCCTTAGCCATCGAGT 59.562 57.895 0.00 0.00 34.57 4.18
893 2374 0.384309 CGCCTTAGCCATCGAGTGTA 59.616 55.000 0.00 0.00 34.57 2.90
976 2457 1.929836 GCCAACTAGTGATCAAGAGCG 59.070 52.381 0.00 0.00 0.00 5.03
1119 2772 9.909644 ACCTTTGTCGTGAGTACAATATATATC 57.090 33.333 0.00 0.00 36.75 1.63
1332 3292 8.450964 TCTATAACTTTCTTTTTGCGATTCCTG 58.549 33.333 0.00 0.00 0.00 3.86
1489 6144 0.388520 CGAGATGAACCAGACGCACA 60.389 55.000 0.00 0.00 0.00 4.57
1596 6252 1.666872 CGTTGTGAACCGTCTCCCC 60.667 63.158 0.00 0.00 0.00 4.81
1614 6270 2.591753 CACGGGCTCACCATCCAT 59.408 61.111 0.00 0.00 40.22 3.41
1642 6298 3.157252 TCCGGCAGATCAGGAGCC 61.157 66.667 0.00 8.04 44.89 4.70
1684 6340 2.284625 TCACCGAGTGCCCCATCT 60.285 61.111 0.00 0.00 32.98 2.90
1716 6372 2.009774 GAGCACATGTACCGCTTCAAT 58.990 47.619 10.21 0.00 35.75 2.57
1775 6460 0.948678 GTTAACTGCCTTCGTGCCAA 59.051 50.000 0.00 0.00 0.00 4.52
1911 6596 0.249489 ATAAGAGGATGCACGACGGC 60.249 55.000 0.00 0.10 0.00 5.68
1929 6614 1.890041 CAACTTCGCCGACAACCCA 60.890 57.895 0.00 0.00 0.00 4.51
2049 6734 0.530870 TGTTGCGGATCGTGAACACA 60.531 50.000 5.80 0.00 30.74 3.72
2070 6755 3.385111 CAGCCCTCTTTTCGGAGTACTAT 59.615 47.826 0.00 0.00 0.00 2.12
2072 6757 4.099727 AGCCCTCTTTTCGGAGTACTATTC 59.900 45.833 0.00 0.00 0.00 1.75
2295 6988 2.190578 GGCCTTGTCCGCTATGCT 59.809 61.111 0.00 0.00 0.00 3.79
2461 7154 1.506718 CGCCTCTACTTCACGCTCA 59.493 57.895 0.00 0.00 0.00 4.26
2784 7478 2.650116 ATCTTCCAGAGCACGGCGT 61.650 57.895 6.77 6.77 0.00 5.68
2992 7686 2.498481 CCGGAATGTGGTACCTTCACTA 59.502 50.000 14.36 0.00 36.21 2.74
3071 7765 3.363844 GACGCCAGAGACCAGCCTC 62.364 68.421 0.00 0.00 0.00 4.70
3104 7798 4.263068 CCACTAGAATTCAAGAGGTGTGGT 60.263 45.833 8.44 0.00 38.01 4.16
3187 7882 7.453752 ACTCCCTCCGTAAATAATATAAGAGCA 59.546 37.037 0.00 0.00 0.00 4.26
3263 8161 7.365295 GGGAGTAGTTATGAAAGTTGGGTCATA 60.365 40.741 0.00 0.00 36.00 2.15
3264 8162 7.711339 GGAGTAGTTATGAAAGTTGGGTCATAG 59.289 40.741 0.00 0.00 37.86 2.23
3452 8350 4.039488 TCAAGCTAAAAGTCGGTCCAGTAA 59.961 41.667 0.00 0.00 0.00 2.24
3471 8369 8.410141 TCCAGTAAAATTCAGTTTGTTAAGTGG 58.590 33.333 0.00 0.00 35.74 4.00
3482 8380 7.013846 TCAGTTTGTTAAGTGGAAAGTAATGGG 59.986 37.037 0.00 0.00 35.74 4.00
3496 8394 8.084684 GGAAAGTAATGGGCTTATGAATCATTC 58.915 37.037 0.00 0.00 31.55 2.67
3538 9260 5.887598 TGATGCATATGCCTTGTAGAACTTT 59.112 36.000 24.54 0.00 41.18 2.66
3680 9408 8.222637 TCAGATCACTAAATTGATTGGGATCAT 58.777 33.333 12.07 0.00 41.71 2.45
3683 9411 9.075678 GATCACTAAATTGATTGGGATCATTCT 57.924 33.333 0.00 0.00 41.71 2.40
3699 9427 5.947228 TCATTCTTAAGGTGCAAACTCAG 57.053 39.130 1.85 0.00 0.00 3.35
3710 9438 4.037690 GTGCAAACTCAGCAAACTTACAG 58.962 43.478 0.00 0.00 44.64 2.74
3760 9488 2.038689 TGTGCCAAACTATCCCACGTTA 59.961 45.455 0.00 0.00 0.00 3.18
3795 9523 6.430925 TGCATGTAATTAGTTGGCTCCATATC 59.569 38.462 0.00 0.00 0.00 1.63
3987 9715 6.478129 AGCGTATAAGAGCTCCTTAGACTAT 58.522 40.000 10.93 4.87 43.71 2.12
4007 9735 8.045507 AGACTATTATCAGGACATTATGCATGG 58.954 37.037 10.16 1.09 37.17 3.66
4017 9755 2.727123 TTATGCATGGGTCGGTGAAT 57.273 45.000 10.16 0.00 0.00 2.57
4050 9788 4.390264 TGTTAATTGGGACGATCAACACA 58.610 39.130 0.00 0.00 0.00 3.72
4051 9789 4.214545 TGTTAATTGGGACGATCAACACAC 59.785 41.667 0.00 0.00 0.00 3.82
4091 9829 0.940126 GTGGATGCCGTCATGCTAAG 59.060 55.000 0.00 0.00 41.06 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.767673 ACAGCTTCTGATCATGGCATTTT 59.232 39.130 0.00 0.00 35.18 1.82
8 9 2.688446 CACAGCTTCTGATCATGGCATT 59.312 45.455 0.00 0.00 35.18 3.56
9 10 2.298610 CACAGCTTCTGATCATGGCAT 58.701 47.619 14.20 0.00 35.18 4.40
10 11 1.680860 CCACAGCTTCTGATCATGGCA 60.681 52.381 14.20 0.00 35.18 4.92
11 12 1.022735 CCACAGCTTCTGATCATGGC 58.977 55.000 0.00 1.07 35.18 4.40
12 13 2.014857 CACCACAGCTTCTGATCATGG 58.985 52.381 7.55 7.55 35.18 3.66
15 16 0.325933 CCCACCACAGCTTCTGATCA 59.674 55.000 0.00 0.00 35.18 2.92
16 17 0.326264 ACCCACCACAGCTTCTGATC 59.674 55.000 0.29 0.00 35.18 2.92
17 18 0.037303 CACCCACCACAGCTTCTGAT 59.963 55.000 0.29 0.00 35.18 2.90
18 19 1.344953 ACACCCACCACAGCTTCTGA 61.345 55.000 0.29 0.00 35.18 3.27
20 21 0.396811 GTACACCCACCACAGCTTCT 59.603 55.000 0.00 0.00 0.00 2.85
21 22 0.605589 GGTACACCCACCACAGCTTC 60.606 60.000 0.00 0.00 38.55 3.86
22 23 1.454539 GGTACACCCACCACAGCTT 59.545 57.895 0.00 0.00 38.55 3.74
23 24 2.879233 CGGTACACCCACCACAGCT 61.879 63.158 0.00 0.00 38.61 4.24
24 25 2.180159 ATCGGTACACCCACCACAGC 62.180 60.000 0.00 0.00 38.61 4.40
25 26 0.323629 AATCGGTACACCCACCACAG 59.676 55.000 0.00 0.00 38.61 3.66
26 27 0.035598 CAATCGGTACACCCACCACA 59.964 55.000 0.00 0.00 38.61 4.17
27 28 0.322322 TCAATCGGTACACCCACCAC 59.678 55.000 0.00 0.00 38.61 4.16
28 29 0.322322 GTCAATCGGTACACCCACCA 59.678 55.000 0.00 0.00 38.61 4.17
29 30 0.611714 AGTCAATCGGTACACCCACC 59.388 55.000 0.00 0.00 35.04 4.61
30 31 1.549170 AGAGTCAATCGGTACACCCAC 59.451 52.381 0.00 0.00 0.00 4.61
31 32 1.933021 AGAGTCAATCGGTACACCCA 58.067 50.000 0.00 0.00 0.00 4.51
32 33 4.667519 ATAAGAGTCAATCGGTACACCC 57.332 45.455 0.00 0.00 0.00 4.61
33 34 6.567050 TGTAATAAGAGTCAATCGGTACACC 58.433 40.000 0.00 0.00 0.00 4.16
34 35 7.919091 TCATGTAATAAGAGTCAATCGGTACAC 59.081 37.037 0.00 0.00 0.00 2.90
35 36 7.919091 GTCATGTAATAAGAGTCAATCGGTACA 59.081 37.037 0.00 0.00 0.00 2.90
36 37 8.136165 AGTCATGTAATAAGAGTCAATCGGTAC 58.864 37.037 0.00 0.00 0.00 3.34
37 38 8.234136 AGTCATGTAATAAGAGTCAATCGGTA 57.766 34.615 0.00 0.00 0.00 4.02
38 39 7.113658 AGTCATGTAATAAGAGTCAATCGGT 57.886 36.000 0.00 0.00 0.00 4.69
39 40 9.698309 AATAGTCATGTAATAAGAGTCAATCGG 57.302 33.333 0.00 0.00 0.00 4.18
70 71 6.614657 CCCCTAACCCAATAAGAATCAATCT 58.385 40.000 0.00 0.00 41.32 2.40
71 72 5.243954 GCCCCTAACCCAATAAGAATCAATC 59.756 44.000 0.00 0.00 0.00 2.67
72 73 5.147767 GCCCCTAACCCAATAAGAATCAAT 58.852 41.667 0.00 0.00 0.00 2.57
73 74 4.017037 TGCCCCTAACCCAATAAGAATCAA 60.017 41.667 0.00 0.00 0.00 2.57
74 75 3.529734 TGCCCCTAACCCAATAAGAATCA 59.470 43.478 0.00 0.00 0.00 2.57
75 76 4.178956 TGCCCCTAACCCAATAAGAATC 57.821 45.455 0.00 0.00 0.00 2.52
76 77 4.482990 CATGCCCCTAACCCAATAAGAAT 58.517 43.478 0.00 0.00 0.00 2.40
77 78 3.909732 CATGCCCCTAACCCAATAAGAA 58.090 45.455 0.00 0.00 0.00 2.52
78 79 2.424234 GCATGCCCCTAACCCAATAAGA 60.424 50.000 6.36 0.00 0.00 2.10
79 80 1.963515 GCATGCCCCTAACCCAATAAG 59.036 52.381 6.36 0.00 0.00 1.73
80 81 1.752436 CGCATGCCCCTAACCCAATAA 60.752 52.381 13.15 0.00 0.00 1.40
81 82 0.179004 CGCATGCCCCTAACCCAATA 60.179 55.000 13.15 0.00 0.00 1.90
82 83 1.455587 CGCATGCCCCTAACCCAAT 60.456 57.895 13.15 0.00 0.00 3.16
83 84 2.044451 CGCATGCCCCTAACCCAA 60.044 61.111 13.15 0.00 0.00 4.12
84 85 4.122149 CCGCATGCCCCTAACCCA 62.122 66.667 13.15 0.00 0.00 4.51
85 86 3.655350 AACCGCATGCCCCTAACCC 62.655 63.158 13.15 0.00 0.00 4.11
86 87 1.663379 GAAACCGCATGCCCCTAACC 61.663 60.000 13.15 0.00 0.00 2.85
87 88 0.963355 TGAAACCGCATGCCCCTAAC 60.963 55.000 13.15 0.36 0.00 2.34
88 89 0.963355 GTGAAACCGCATGCCCCTAA 60.963 55.000 13.15 0.00 0.00 2.69
89 90 1.377987 GTGAAACCGCATGCCCCTA 60.378 57.895 13.15 0.00 0.00 3.53
90 91 2.676471 GTGAAACCGCATGCCCCT 60.676 61.111 13.15 0.00 0.00 4.79
91 92 2.676471 AGTGAAACCGCATGCCCC 60.676 61.111 13.15 0.00 37.80 5.80
92 93 2.700773 GGAGTGAAACCGCATGCCC 61.701 63.158 13.15 0.00 37.80 5.36
93 94 2.700773 GGGAGTGAAACCGCATGCC 61.701 63.158 13.15 0.00 37.80 4.40
94 95 2.877691 GGGAGTGAAACCGCATGC 59.122 61.111 7.91 7.91 37.80 4.06
95 96 3.177600 CGGGAGTGAAACCGCATG 58.822 61.111 0.00 0.00 43.96 4.06
100 101 0.521735 GTTGCATCGGGAGTGAAACC 59.478 55.000 0.00 0.00 37.80 3.27
101 102 0.165944 CGTTGCATCGGGAGTGAAAC 59.834 55.000 9.33 0.00 32.77 2.78
102 103 1.573829 GCGTTGCATCGGGAGTGAAA 61.574 55.000 18.16 0.00 0.00 2.69
103 104 2.032634 GCGTTGCATCGGGAGTGAA 61.033 57.895 18.16 0.00 0.00 3.18
104 105 2.434185 GCGTTGCATCGGGAGTGA 60.434 61.111 18.16 0.00 0.00 3.41
105 106 2.741985 TGCGTTGCATCGGGAGTG 60.742 61.111 18.16 0.00 31.71 3.51
106 107 2.742372 GTGCGTTGCATCGGGAGT 60.742 61.111 18.16 0.00 41.91 3.85
107 108 3.853330 CGTGCGTTGCATCGGGAG 61.853 66.667 18.16 0.00 41.91 4.30
108 109 4.365505 TCGTGCGTTGCATCGGGA 62.366 61.111 18.16 0.00 41.91 5.14
109 110 3.853330 CTCGTGCGTTGCATCGGG 61.853 66.667 18.16 6.59 41.91 5.14
110 111 3.071459 GACTCGTGCGTTGCATCGG 62.071 63.158 18.16 4.32 41.91 4.18
111 112 1.617755 AAGACTCGTGCGTTGCATCG 61.618 55.000 12.78 12.78 41.91 3.84
112 113 0.512952 AAAGACTCGTGCGTTGCATC 59.487 50.000 0.00 0.00 41.91 3.91
113 114 0.944386 AAAAGACTCGTGCGTTGCAT 59.056 45.000 0.00 0.00 41.91 3.96
114 115 0.730265 AAAAAGACTCGTGCGTTGCA 59.270 45.000 0.00 0.00 35.60 4.08
115 116 1.112459 CAAAAAGACTCGTGCGTTGC 58.888 50.000 0.00 0.00 0.00 4.17
116 117 1.112459 GCAAAAAGACTCGTGCGTTG 58.888 50.000 0.00 0.00 0.00 4.10
117 118 1.014352 AGCAAAAAGACTCGTGCGTT 58.986 45.000 0.00 0.00 41.90 4.84
118 119 1.792949 CTAGCAAAAAGACTCGTGCGT 59.207 47.619 0.00 0.00 41.90 5.24
119 120 1.792949 ACTAGCAAAAAGACTCGTGCG 59.207 47.619 0.00 0.00 41.90 5.34
120 121 3.879932 AACTAGCAAAAAGACTCGTGC 57.120 42.857 0.00 0.00 37.26 5.34
121 122 6.952935 ATCTAACTAGCAAAAAGACTCGTG 57.047 37.500 0.00 0.00 0.00 4.35
122 123 8.305317 AGTAATCTAACTAGCAAAAAGACTCGT 58.695 33.333 0.00 0.00 0.00 4.18
123 124 8.587950 CAGTAATCTAACTAGCAAAAAGACTCG 58.412 37.037 0.00 0.00 0.00 4.18
124 125 9.640963 TCAGTAATCTAACTAGCAAAAAGACTC 57.359 33.333 0.00 0.00 0.00 3.36
125 126 9.998106 TTCAGTAATCTAACTAGCAAAAAGACT 57.002 29.630 0.00 0.00 0.00 3.24
172 173 1.003233 ACGTGGGATCAAAAGAGGGAC 59.997 52.381 0.00 0.00 0.00 4.46
189 190 1.219522 GGTGCGCACTGAGTTAACGT 61.220 55.000 36.84 0.00 0.00 3.99
208 209 2.098298 CCGGCGTGAGAAAATGCG 59.902 61.111 6.01 0.00 32.58 4.73
212 213 0.108804 CTCTAGCCGGCGTGAGAAAA 60.109 55.000 33.32 13.40 0.00 2.29
297 300 5.296035 CGCCTTGAGGGTAAATTAGTTTAGG 59.704 44.000 0.00 0.00 37.43 2.69
369 375 5.376625 GGGGTTACAGATTAGCATCATTGA 58.623 41.667 0.00 0.00 0.00 2.57
450 867 5.335028 TGGAGGGAGTATTAGCTAGCTAA 57.665 43.478 33.35 33.35 41.95 3.09
464 881 2.185004 ACGTTGTGAAATGGAGGGAG 57.815 50.000 0.00 0.00 0.00 4.30
465 882 2.635915 ACTACGTTGTGAAATGGAGGGA 59.364 45.455 0.73 0.00 0.00 4.20
466 883 3.053831 ACTACGTTGTGAAATGGAGGG 57.946 47.619 0.73 0.00 0.00 4.30
467 884 4.817517 AGTACTACGTTGTGAAATGGAGG 58.182 43.478 13.03 0.00 0.00 4.30
468 885 6.645415 AGAAAGTACTACGTTGTGAAATGGAG 59.355 38.462 13.03 0.00 0.00 3.86
469 886 6.518493 AGAAAGTACTACGTTGTGAAATGGA 58.482 36.000 13.03 0.00 0.00 3.41
470 887 6.780706 AGAAAGTACTACGTTGTGAAATGG 57.219 37.500 13.03 0.00 0.00 3.16
473 890 9.754382 AGATAAAGAAAGTACTACGTTGTGAAA 57.246 29.630 13.03 0.00 0.00 2.69
474 891 9.403110 GAGATAAAGAAAGTACTACGTTGTGAA 57.597 33.333 13.03 0.00 0.00 3.18
475 892 8.790718 AGAGATAAAGAAAGTACTACGTTGTGA 58.209 33.333 13.03 0.00 0.00 3.58
476 893 8.851416 CAGAGATAAAGAAAGTACTACGTTGTG 58.149 37.037 13.03 0.00 0.00 3.33
477 894 8.574737 ACAGAGATAAAGAAAGTACTACGTTGT 58.425 33.333 7.95 7.95 0.00 3.32
478 895 8.851416 CACAGAGATAAAGAAAGTACTACGTTG 58.149 37.037 0.00 0.00 0.00 4.10
479 896 7.541437 GCACAGAGATAAAGAAAGTACTACGTT 59.459 37.037 0.00 1.32 0.00 3.99
480 897 7.028361 GCACAGAGATAAAGAAAGTACTACGT 58.972 38.462 0.00 0.00 0.00 3.57
481 898 7.251994 AGCACAGAGATAAAGAAAGTACTACG 58.748 38.462 0.00 0.00 0.00 3.51
482 899 8.989653 AAGCACAGAGATAAAGAAAGTACTAC 57.010 34.615 0.00 0.00 0.00 2.73
483 900 8.803235 TGAAGCACAGAGATAAAGAAAGTACTA 58.197 33.333 0.00 0.00 0.00 1.82
484 901 7.671302 TGAAGCACAGAGATAAAGAAAGTACT 58.329 34.615 0.00 0.00 0.00 2.73
485 902 7.891183 TGAAGCACAGAGATAAAGAAAGTAC 57.109 36.000 0.00 0.00 0.00 2.73
486 903 8.150945 AGTTGAAGCACAGAGATAAAGAAAGTA 58.849 33.333 0.00 0.00 0.00 2.24
487 904 6.995091 AGTTGAAGCACAGAGATAAAGAAAGT 59.005 34.615 0.00 0.00 0.00 2.66
488 905 7.432350 AGTTGAAGCACAGAGATAAAGAAAG 57.568 36.000 0.00 0.00 0.00 2.62
489 906 7.807977 AAGTTGAAGCACAGAGATAAAGAAA 57.192 32.000 0.00 0.00 0.00 2.52
490 907 7.498900 TCAAAGTTGAAGCACAGAGATAAAGAA 59.501 33.333 0.00 0.00 33.55 2.52
491 908 6.992123 TCAAAGTTGAAGCACAGAGATAAAGA 59.008 34.615 0.00 0.00 33.55 2.52
492 909 7.074502 GTCAAAGTTGAAGCACAGAGATAAAG 58.925 38.462 0.00 0.00 39.21 1.85
493 910 6.017109 GGTCAAAGTTGAAGCACAGAGATAAA 60.017 38.462 0.00 0.00 39.21 1.40
494 911 5.470098 GGTCAAAGTTGAAGCACAGAGATAA 59.530 40.000 0.00 0.00 39.21 1.75
495 912 4.997395 GGTCAAAGTTGAAGCACAGAGATA 59.003 41.667 0.00 0.00 39.21 1.98
496 913 3.817647 GGTCAAAGTTGAAGCACAGAGAT 59.182 43.478 0.00 0.00 39.21 2.75
497 914 3.206150 GGTCAAAGTTGAAGCACAGAGA 58.794 45.455 0.00 0.00 39.21 3.10
498 915 2.032549 CGGTCAAAGTTGAAGCACAGAG 60.033 50.000 0.00 0.00 39.21 3.35
499 916 1.939934 CGGTCAAAGTTGAAGCACAGA 59.060 47.619 0.00 0.00 39.21 3.41
500 917 1.670811 ACGGTCAAAGTTGAAGCACAG 59.329 47.619 0.00 0.00 39.21 3.66
501 918 1.745232 ACGGTCAAAGTTGAAGCACA 58.255 45.000 0.00 0.00 39.21 4.57
502 919 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
503 920 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
504 921 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
524 941 9.891828 CCGCTGCAATCAATATTAATAGTTAAA 57.108 29.630 0.00 0.00 0.00 1.52
525 942 8.511321 CCCGCTGCAATCAATATTAATAGTTAA 58.489 33.333 0.00 0.00 0.00 2.01
526 943 7.880713 TCCCGCTGCAATCAATATTAATAGTTA 59.119 33.333 0.00 0.00 0.00 2.24
527 944 6.714810 TCCCGCTGCAATCAATATTAATAGTT 59.285 34.615 0.00 0.00 0.00 2.24
528 945 6.237901 TCCCGCTGCAATCAATATTAATAGT 58.762 36.000 0.00 0.00 0.00 2.12
529 946 6.676456 GCTCCCGCTGCAATCAATATTAATAG 60.676 42.308 0.00 0.00 0.00 1.73
530 947 5.123820 GCTCCCGCTGCAATCAATATTAATA 59.876 40.000 0.00 0.00 0.00 0.98
531 948 4.082571 GCTCCCGCTGCAATCAATATTAAT 60.083 41.667 0.00 0.00 0.00 1.40
532 949 3.253188 GCTCCCGCTGCAATCAATATTAA 59.747 43.478 0.00 0.00 0.00 1.40
533 950 2.813754 GCTCCCGCTGCAATCAATATTA 59.186 45.455 0.00 0.00 0.00 0.98
534 951 1.610522 GCTCCCGCTGCAATCAATATT 59.389 47.619 0.00 0.00 0.00 1.28
535 952 1.242076 GCTCCCGCTGCAATCAATAT 58.758 50.000 0.00 0.00 0.00 1.28
536 953 0.107263 TGCTCCCGCTGCAATCAATA 60.107 50.000 0.00 0.00 37.51 1.90
537 954 0.966875 TTGCTCCCGCTGCAATCAAT 60.967 50.000 0.00 0.00 44.24 2.57
538 955 1.603171 TTGCTCCCGCTGCAATCAA 60.603 52.632 0.00 0.00 44.24 2.57
539 956 2.033911 TTGCTCCCGCTGCAATCA 59.966 55.556 0.00 0.00 44.24 2.57
542 959 0.392336 AATTTTTGCTCCCGCTGCAA 59.608 45.000 0.00 0.00 46.90 4.08
543 960 1.252175 TAATTTTTGCTCCCGCTGCA 58.748 45.000 0.00 0.00 38.80 4.41
544 961 2.584492 ATAATTTTTGCTCCCGCTGC 57.416 45.000 0.00 0.00 36.97 5.25
545 962 5.437289 TGATATAATTTTTGCTCCCGCTG 57.563 39.130 0.00 0.00 36.97 5.18
546 963 6.265196 TCATTGATATAATTTTTGCTCCCGCT 59.735 34.615 0.00 0.00 36.97 5.52
547 964 6.446318 TCATTGATATAATTTTTGCTCCCGC 58.554 36.000 0.00 0.00 0.00 6.13
548 965 9.480053 AATTCATTGATATAATTTTTGCTCCCG 57.520 29.630 0.00 0.00 0.00 5.14
606 1023 1.527380 AACTGCGGCGGGAGAAAAA 60.527 52.632 19.55 0.00 35.29 1.94
607 1024 2.112297 AACTGCGGCGGGAGAAAA 59.888 55.556 19.55 0.00 35.29 2.29
608 1025 2.668212 CAACTGCGGCGGGAGAAA 60.668 61.111 19.55 0.00 35.29 2.52
609 1026 4.697756 CCAACTGCGGCGGGAGAA 62.698 66.667 19.55 0.00 35.29 2.87
616 1033 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
617 1034 0.670546 ATCAACGAGACCAACTGCGG 60.671 55.000 0.00 0.00 0.00 5.69
618 1035 1.148310 AATCAACGAGACCAACTGCG 58.852 50.000 0.00 0.00 0.00 5.18
619 1036 4.742438 TTTAATCAACGAGACCAACTGC 57.258 40.909 0.00 0.00 0.00 4.40
620 1037 9.277565 CATAAATTTAATCAACGAGACCAACTG 57.722 33.333 1.21 0.00 0.00 3.16
621 1038 8.458843 CCATAAATTTAATCAACGAGACCAACT 58.541 33.333 1.21 0.00 0.00 3.16
622 1039 8.241367 ACCATAAATTTAATCAACGAGACCAAC 58.759 33.333 1.21 0.00 0.00 3.77
623 1040 8.343168 ACCATAAATTTAATCAACGAGACCAA 57.657 30.769 1.21 0.00 0.00 3.67
624 1041 7.931578 ACCATAAATTTAATCAACGAGACCA 57.068 32.000 1.21 0.00 0.00 4.02
637 1054 8.732531 CGAGGTCCAACTTTAACCATAAATTTA 58.267 33.333 0.00 0.00 35.43 1.40
638 1055 7.309560 CCGAGGTCCAACTTTAACCATAAATTT 60.310 37.037 0.00 0.00 35.43 1.82
639 1056 6.152154 CCGAGGTCCAACTTTAACCATAAATT 59.848 38.462 0.00 0.00 35.43 1.82
640 1057 5.650703 CCGAGGTCCAACTTTAACCATAAAT 59.349 40.000 0.00 0.00 35.43 1.40
641 1058 5.005094 CCGAGGTCCAACTTTAACCATAAA 58.995 41.667 0.00 0.00 35.43 1.40
642 1059 4.286549 TCCGAGGTCCAACTTTAACCATAA 59.713 41.667 0.00 0.00 35.43 1.90
643 1060 3.839490 TCCGAGGTCCAACTTTAACCATA 59.161 43.478 0.00 0.00 35.43 2.74
644 1061 2.640826 TCCGAGGTCCAACTTTAACCAT 59.359 45.455 0.00 0.00 35.43 3.55
645 1062 2.048601 TCCGAGGTCCAACTTTAACCA 58.951 47.619 0.00 0.00 35.43 3.67
646 1063 2.845363 TCCGAGGTCCAACTTTAACC 57.155 50.000 0.00 0.00 0.00 2.85
647 1064 3.058432 GCTTTCCGAGGTCCAACTTTAAC 60.058 47.826 0.00 0.00 0.00 2.01
648 1065 3.143728 GCTTTCCGAGGTCCAACTTTAA 58.856 45.455 0.00 0.00 0.00 1.52
649 1066 2.774687 GCTTTCCGAGGTCCAACTTTA 58.225 47.619 0.00 0.00 0.00 1.85
650 1067 1.605753 GCTTTCCGAGGTCCAACTTT 58.394 50.000 0.00 0.00 0.00 2.66
651 1068 0.602905 CGCTTTCCGAGGTCCAACTT 60.603 55.000 0.00 0.00 40.02 2.66
652 1069 1.004918 CGCTTTCCGAGGTCCAACT 60.005 57.895 0.00 0.00 40.02 3.16
653 1070 2.677979 GCGCTTTCCGAGGTCCAAC 61.678 63.158 0.00 0.00 40.02 3.77
654 1071 2.358247 GCGCTTTCCGAGGTCCAA 60.358 61.111 0.00 0.00 40.02 3.53
655 1072 4.735132 CGCGCTTTCCGAGGTCCA 62.735 66.667 5.56 0.00 40.02 4.02
663 1080 2.966182 ATAGTACGCCCGCGCTTTCC 62.966 60.000 9.37 0.00 44.19 3.13
664 1081 0.318107 TATAGTACGCCCGCGCTTTC 60.318 55.000 9.37 0.00 44.19 2.62
665 1082 0.316204 ATATAGTACGCCCGCGCTTT 59.684 50.000 9.37 0.00 44.19 3.51
666 1083 0.316204 AATATAGTACGCCCGCGCTT 59.684 50.000 9.37 0.00 44.19 4.68
667 1084 0.316204 AAATATAGTACGCCCGCGCT 59.684 50.000 9.37 1.65 44.19 5.92
668 1085 1.136446 CAAAATATAGTACGCCCGCGC 60.136 52.381 9.37 0.00 44.19 6.86
669 1086 2.396601 TCAAAATATAGTACGCCCGCG 58.603 47.619 7.69 7.69 46.03 6.46
670 1087 4.799419 TTTCAAAATATAGTACGCCCGC 57.201 40.909 0.00 0.00 0.00 6.13
671 1088 5.467399 TCCATTTCAAAATATAGTACGCCCG 59.533 40.000 0.00 0.00 0.00 6.13
672 1089 6.072673 CCTCCATTTCAAAATATAGTACGCCC 60.073 42.308 0.00 0.00 0.00 6.13
673 1090 6.072673 CCCTCCATTTCAAAATATAGTACGCC 60.073 42.308 0.00 0.00 0.00 5.68
674 1091 6.708949 TCCCTCCATTTCAAAATATAGTACGC 59.291 38.462 0.00 0.00 0.00 4.42
675 1092 7.931948 ACTCCCTCCATTTCAAAATATAGTACG 59.068 37.037 0.00 0.00 0.00 3.67
678 1095 9.004231 ACTACTCCCTCCATTTCAAAATATAGT 57.996 33.333 0.00 0.00 0.00 2.12
683 1100 9.853177 CTATTACTACTCCCTCCATTTCAAAAT 57.147 33.333 0.00 0.00 0.00 1.82
684 1101 7.773690 GCTATTACTACTCCCTCCATTTCAAAA 59.226 37.037 0.00 0.00 0.00 2.44
685 1102 7.280356 GCTATTACTACTCCCTCCATTTCAAA 58.720 38.462 0.00 0.00 0.00 2.69
686 1103 6.183361 GGCTATTACTACTCCCTCCATTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
687 1104 5.307196 GGCTATTACTACTCCCTCCATTTCA 59.693 44.000 0.00 0.00 0.00 2.69
688 1105 5.307196 TGGCTATTACTACTCCCTCCATTTC 59.693 44.000 0.00 0.00 0.00 2.17
689 1106 5.224441 TGGCTATTACTACTCCCTCCATTT 58.776 41.667 0.00 0.00 0.00 2.32
690 1107 4.827789 TGGCTATTACTACTCCCTCCATT 58.172 43.478 0.00 0.00 0.00 3.16
691 1108 4.487282 TGGCTATTACTACTCCCTCCAT 57.513 45.455 0.00 0.00 0.00 3.41
692 1109 3.985553 TGGCTATTACTACTCCCTCCA 57.014 47.619 0.00 0.00 0.00 3.86
693 1110 4.161102 ACATGGCTATTACTACTCCCTCC 58.839 47.826 0.00 0.00 0.00 4.30
694 1111 7.038941 ACAATACATGGCTATTACTACTCCCTC 60.039 40.741 0.00 0.00 0.00 4.30
695 1112 6.787957 ACAATACATGGCTATTACTACTCCCT 59.212 38.462 0.00 0.00 0.00 4.20
696 1113 7.005709 ACAATACATGGCTATTACTACTCCC 57.994 40.000 0.00 0.00 0.00 4.30
697 1114 8.804204 AGTACAATACATGGCTATTACTACTCC 58.196 37.037 0.00 0.00 0.00 3.85
732 1720 2.793946 GCAACCTAGTGGCATGCG 59.206 61.111 12.44 0.00 38.90 4.73
742 1736 0.683973 TTTTCGTACCCCGCAACCTA 59.316 50.000 0.00 0.00 36.19 3.08
789 2269 2.026542 ACGCCATGATAGCATCCATCAT 60.027 45.455 0.00 0.00 42.52 2.45
880 2361 6.407074 GGCCTATTTATATACACTCGATGGCT 60.407 42.308 0.00 0.00 35.05 4.75
884 2365 7.476540 TGTGGCCTATTTATATACACTCGAT 57.523 36.000 3.32 0.00 0.00 3.59
889 2370 6.464222 TGAGCTGTGGCCTATTTATATACAC 58.536 40.000 3.32 0.00 39.73 2.90
890 2371 6.295859 CCTGAGCTGTGGCCTATTTATATACA 60.296 42.308 3.32 0.00 39.73 2.29
893 2374 4.566488 GCCTGAGCTGTGGCCTATTTATAT 60.566 45.833 13.94 0.00 43.11 0.86
1080 2564 1.594293 AAAGGTGTGCTCCACGACG 60.594 57.895 0.00 0.00 45.52 5.12
1456 6111 2.567169 TCATCTCGTGGACCTGAACATT 59.433 45.455 0.00 0.00 0.00 2.71
1489 6144 1.896220 ATCTTGGTCGTGTTGCACAT 58.104 45.000 0.00 0.00 33.40 3.21
1596 6252 2.556840 AATGGATGGTGAGCCCGTGG 62.557 60.000 0.00 0.00 35.15 4.94
1755 6440 2.624169 GGCACGAAGGCAGTTAACA 58.376 52.632 8.61 0.00 43.51 2.41
1911 6596 1.890041 TGGGTTGTCGGCGAAGTTG 60.890 57.895 12.92 0.00 0.00 3.16
1929 6614 0.740868 CATTGATGGTCGCCGACAGT 60.741 55.000 20.08 6.44 33.68 3.55
1957 6642 0.037790 GAGCAGTTCTTGAGGTCGCT 60.038 55.000 0.00 0.00 0.00 4.93
1986 6671 1.181786 CAAGGACGAAGCTCTCCTCT 58.818 55.000 7.78 0.00 35.72 3.69
2049 6734 1.939980 AGTACTCCGAAAAGAGGGCT 58.060 50.000 0.00 0.00 38.26 5.19
2070 6755 3.565214 TGCCCAGCGACCTTGGAA 61.565 61.111 0.00 0.00 37.96 3.53
2072 6757 4.641645 TGTGCCCAGCGACCTTGG 62.642 66.667 0.00 0.00 35.41 3.61
2210 6903 2.633657 CGAGCGCAACCATATGGC 59.366 61.111 22.18 7.22 39.32 4.40
2992 7686 5.078949 TGATGATGTGGAACTCAAAATGGT 58.921 37.500 0.00 0.00 38.04 3.55
3085 7779 5.825593 AGAACCACACCTCTTGAATTCTA 57.174 39.130 7.05 0.00 0.00 2.10
3243 7938 7.259088 AGTCTATGACCCAACTTTCATAACT 57.741 36.000 0.00 0.00 34.93 2.24
3244 7939 7.923414 AAGTCTATGACCCAACTTTCATAAC 57.077 36.000 0.00 0.00 34.93 1.89
3245 7940 8.934023 AAAAGTCTATGACCCAACTTTCATAA 57.066 30.769 0.00 0.00 40.16 1.90
3419 8317 6.183360 CCGACTTTTAGCTTGATGTAGTTCAG 60.183 42.308 0.00 0.00 0.00 3.02
3471 8369 8.854117 AGAATGATTCATAAGCCCATTACTTTC 58.146 33.333 8.03 0.00 0.00 2.62
3538 9260 4.705110 TGAAGGATTTGAGACAGTGGAA 57.295 40.909 0.00 0.00 0.00 3.53
3680 9408 3.550820 TGCTGAGTTTGCACCTTAAGAA 58.449 40.909 3.36 0.00 35.31 2.52
3683 9411 3.699038 AGTTTGCTGAGTTTGCACCTTAA 59.301 39.130 0.00 0.00 40.40 1.85
3699 9427 4.811557 CCATACCTCTAGCTGTAAGTTTGC 59.188 45.833 0.00 0.00 35.30 3.68
3710 9438 4.770010 AGAGAATGTAGCCATACCTCTAGC 59.230 45.833 0.00 0.00 38.44 3.42
3892 9620 4.273480 AGCAACACTACAACATCACAAGTC 59.727 41.667 0.00 0.00 0.00 3.01
3961 9689 5.702209 AGTCTAAGGAGCTCTTATACGCTAC 59.298 44.000 14.64 1.38 38.97 3.58
3987 9715 5.316167 GACCCATGCATAATGTCCTGATAA 58.684 41.667 0.00 0.00 34.11 1.75
4007 9735 1.134699 TGATCTCAGCATTCACCGACC 60.135 52.381 0.00 0.00 0.00 4.79
4017 9755 4.883585 GTCCCAATTAACATGATCTCAGCA 59.116 41.667 0.00 0.00 0.00 4.41
4091 9829 1.220477 GTTCCCCTCTGCTCTCTGC 59.780 63.158 0.00 0.00 43.25 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.