Multiple sequence alignment - TraesCS1A01G107200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G107200 chr1A 100.000 4226 0 0 2837 7062 104933232 104937457 0.000000e+00 7805.0
1 TraesCS1A01G107200 chr1A 100.000 2505 0 0 1 2505 104930396 104932900 0.000000e+00 4626.0
2 TraesCS1A01G107200 chr1A 83.065 992 156 11 5067 6052 445510089 445509104 0.000000e+00 891.0
3 TraesCS1A01G107200 chr1A 93.243 74 4 1 330 403 104930656 104930728 2.690000e-19 108.0
4 TraesCS1A01G107200 chr1A 93.243 74 4 1 261 333 104930725 104930798 2.690000e-19 108.0
5 TraesCS1A01G107200 chr1A 97.222 36 0 1 2837 2871 104933430 104933465 7.650000e-05 60.2
6 TraesCS1A01G107200 chr1A 97.059 34 1 0 6381 6414 555555186 555555219 2.750000e-04 58.4
7 TraesCS1A01G107200 chr1A 87.755 49 5 1 6372 6419 435963065 435963017 1.000000e-03 56.5
8 TraesCS1A01G107200 chr1A 100.000 29 0 0 6383 6411 435393171 435393199 4.000000e-03 54.7
9 TraesCS1A01G107200 chr1A 91.892 37 3 0 6384 6420 531886388 531886352 1.300000e-02 52.8
10 TraesCS1A01G107200 chr1B 96.078 1581 61 1 4773 6353 151078296 151079875 0.000000e+00 2575.0
11 TraesCS1A01G107200 chr1B 95.286 1294 39 10 3437 4712 151076985 151078274 0.000000e+00 2032.0
12 TraesCS1A01G107200 chr1B 88.561 848 55 23 714 1548 151075583 151076401 0.000000e+00 990.0
13 TraesCS1A01G107200 chr1B 81.827 985 169 9 5067 6046 465385073 465386052 0.000000e+00 819.0
14 TraesCS1A01G107200 chr1B 88.636 396 27 9 6677 7061 151080374 151080762 3.860000e-127 466.0
15 TraesCS1A01G107200 chr1B 87.234 423 22 13 330 728 151075137 151075551 3.000000e-123 453.0
16 TraesCS1A01G107200 chr1B 81.851 562 49 19 1565 2103 151076461 151076992 2.350000e-114 424.0
17 TraesCS1A01G107200 chr1B 79.284 391 75 6 4324 4711 465384405 465384792 1.170000e-67 268.0
18 TraesCS1A01G107200 chr1B 87.156 218 20 5 99 315 151074981 151075191 2.550000e-59 241.0
19 TraesCS1A01G107200 chr1B 100.000 31 0 0 6384 6414 455278504 455278534 2.750000e-04 58.4
20 TraesCS1A01G107200 chr1D 91.987 1797 91 29 333 2103 100655690 100653921 0.000000e+00 2471.0
21 TraesCS1A01G107200 chr1D 93.746 1615 68 17 4795 6385 100652630 100651025 0.000000e+00 2392.0
22 TraesCS1A01G107200 chr1D 95.751 1318 42 7 3436 4753 100653929 100652626 0.000000e+00 2111.0
23 TraesCS1A01G107200 chr1D 82.762 992 159 11 5067 6052 345406794 345405809 0.000000e+00 874.0
24 TraesCS1A01G107200 chr1D 87.719 570 52 12 2876 3437 440926577 440927136 0.000000e+00 649.0
25 TraesCS1A01G107200 chr1D 93.425 365 22 2 2104 2467 440926175 440926538 2.240000e-149 540.0
26 TraesCS1A01G107200 chr1D 92.508 307 18 4 30 333 100655924 100655620 1.090000e-117 435.0
27 TraesCS1A01G107200 chr1D 95.429 175 8 0 6887 7061 100468086 100467912 5.390000e-71 279.0
28 TraesCS1A01G107200 chr1D 100.000 29 0 0 6383 6411 16532649 16532677 4.000000e-03 54.7
29 TraesCS1A01G107200 chr1D 96.875 32 1 0 6410 6441 37190841 37190810 4.000000e-03 54.7
30 TraesCS1A01G107200 chr2A 97.663 599 14 0 2837 3435 551810510 551809912 0.000000e+00 1029.0
31 TraesCS1A01G107200 chr2A 93.537 557 24 5 2883 3436 740037305 740036758 0.000000e+00 819.0
32 TraesCS1A01G107200 chr2A 98.250 400 5 2 2107 2505 551811193 551810795 0.000000e+00 699.0
33 TraesCS1A01G107200 chr2A 97.750 400 8 1 2107 2505 740037699 740037300 0.000000e+00 688.0
34 TraesCS1A01G107200 chr2A 94.872 39 1 1 2837 2874 551810312 551810274 7.650000e-05 60.2
35 TraesCS1A01G107200 chr2A 94.872 39 1 1 2837 2874 740037154 740037116 7.650000e-05 60.2
36 TraesCS1A01G107200 chr2A 100.000 29 0 0 6409 6437 707110498 707110470 4.000000e-03 54.7
37 TraesCS1A01G107200 chr2A 100.000 28 0 0 6410 6437 194116168 194116141 1.300000e-02 52.8
38 TraesCS1A01G107200 chr6A 97.802 546 11 1 2891 3435 91629687 91630232 0.000000e+00 941.0
39 TraesCS1A01G107200 chr6A 99.010 404 3 1 2103 2505 91629124 91629527 0.000000e+00 723.0
40 TraesCS1A01G107200 chr6A 97.872 47 1 0 2837 2883 91629655 91629701 1.630000e-11 82.4
41 TraesCS1A01G107200 chr6A 85.484 62 9 0 1896 1957 559166781 559166720 1.640000e-06 65.8
42 TraesCS1A01G107200 chr6A 85.965 57 8 0 1901 1957 559166399 559166343 2.130000e-05 62.1
43 TraesCS1A01G107200 chr6A 97.222 36 0 1 2837 2871 91629831 91629866 7.650000e-05 60.2
44 TraesCS1A01G107200 chr5D 88.792 571 46 8 2876 3437 264490435 264490996 0.000000e+00 684.0
45 TraesCS1A01G107200 chr5D 92.896 366 22 4 2104 2467 264490033 264490396 4.850000e-146 529.0
46 TraesCS1A01G107200 chr5D 92.329 365 25 3 2104 2467 439212734 439212372 3.780000e-142 516.0
47 TraesCS1A01G107200 chr5D 100.000 31 0 0 2837 2867 264490597 264490627 2.750000e-04 58.4
48 TraesCS1A01G107200 chr5D 97.059 34 1 0 6383 6416 404981094 404981127 2.750000e-04 58.4
49 TraesCS1A01G107200 chr5D 100.000 31 0 0 6384 6414 430970338 430970308 2.750000e-04 58.4
50 TraesCS1A01G107200 chr5D 94.118 34 2 0 6384 6417 468508232 468508199 1.300000e-02 52.8
51 TraesCS1A01G107200 chr3A 88.536 567 53 5 2873 3436 650193744 650194301 0.000000e+00 676.0
52 TraesCS1A01G107200 chr3A 90.515 369 29 3 2104 2467 650193325 650193692 3.830000e-132 483.0
53 TraesCS1A01G107200 chr7D 87.609 573 58 9 2867 3435 622178438 622179001 0.000000e+00 652.0
54 TraesCS1A01G107200 chr7D 87.138 311 31 5 3131 3441 117797699 117797398 1.890000e-90 344.0
55 TraesCS1A01G107200 chr7D 86.471 170 19 4 5875 6041 90853028 90853196 4.350000e-42 183.0
56 TraesCS1A01G107200 chr7D 100.000 31 0 0 2837 2867 622178606 622178636 2.750000e-04 58.4
57 TraesCS1A01G107200 chr7D 92.308 39 0 3 6375 6411 264302235 264302272 1.300000e-02 52.8
58 TraesCS1A01G107200 chr7A 87.034 563 61 5 2883 3443 43177218 43177770 6.010000e-175 625.0
59 TraesCS1A01G107200 chr7A 89.764 381 31 5 2092 2467 43176777 43177154 1.380000e-131 481.0
60 TraesCS1A01G107200 chr7A 80.876 251 44 4 5805 6053 701638555 701638307 2.010000e-45 195.0
61 TraesCS1A01G107200 chr7A 87.349 166 17 4 5875 6037 92892729 92892893 3.360000e-43 187.0
62 TraesCS1A01G107200 chrUn 93.699 365 21 2 2104 2467 11223560 11223923 4.820000e-151 545.0
63 TraesCS1A01G107200 chr2B 86.689 293 30 7 3143 3434 318205289 318205005 4.110000e-82 316.0
64 TraesCS1A01G107200 chr2B 97.059 34 1 0 6384 6417 579067278 579067245 2.750000e-04 58.4
65 TraesCS1A01G107200 chr2B 100.000 28 0 0 6410 6437 634242104 634242077 1.300000e-02 52.8
66 TraesCS1A01G107200 chr3D 85.902 305 29 7 3131 3435 389204968 389204678 5.320000e-81 313.0
67 TraesCS1A01G107200 chr3D 86.275 51 7 0 6361 6411 304710911 304710961 1.000000e-03 56.5
68 TraesCS1A01G107200 chr4A 92.857 196 12 2 2920 3113 618190616 618190421 4.170000e-72 283.0
69 TraesCS1A01G107200 chr4A 97.059 34 1 0 6384 6417 69517162 69517129 2.750000e-04 58.4
70 TraesCS1A01G107200 chr6D 90.625 192 17 1 2920 3110 76046016 76046207 3.270000e-63 254.0
71 TraesCS1A01G107200 chr6D 100.000 31 0 0 2837 2867 76046131 76046161 2.750000e-04 58.4
72 TraesCS1A01G107200 chr6D 100.000 28 0 0 6384 6411 11495530 11495557 1.300000e-02 52.8
73 TraesCS1A01G107200 chr6D 96.774 31 1 0 6384 6414 227347663 227347633 1.300000e-02 52.8
74 TraesCS1A01G107200 chr6D 96.774 31 1 0 6384 6414 249996947 249996917 1.300000e-02 52.8
75 TraesCS1A01G107200 chr6D 96.774 31 1 0 6381 6411 458995179 458995209 1.300000e-02 52.8
76 TraesCS1A01G107200 chr7B 87.342 158 16 4 5875 6029 42031774 42031930 2.020000e-40 178.0
77 TraesCS1A01G107200 chr3B 92.683 41 2 1 6372 6411 598645143 598645183 2.750000e-04 58.4
78 TraesCS1A01G107200 chr4D 100.000 30 0 0 1906 1935 337087160 337087131 1.000000e-03 56.5
79 TraesCS1A01G107200 chr4D 94.444 36 1 1 6381 6416 470119567 470119601 4.000000e-03 54.7
80 TraesCS1A01G107200 chr4D 100.000 28 0 0 6384 6411 108228673 108228700 1.300000e-02 52.8
81 TraesCS1A01G107200 chr4D 96.774 31 1 0 6381 6411 401668335 401668365 1.300000e-02 52.8
82 TraesCS1A01G107200 chr4D 100.000 28 0 0 6384 6411 405770430 405770457 1.300000e-02 52.8
83 TraesCS1A01G107200 chr4D 100.000 28 0 0 6384 6411 477740717 477740744 1.300000e-02 52.8
84 TraesCS1A01G107200 chr4D 96.774 31 1 0 6381 6411 495998159 495998189 1.300000e-02 52.8
85 TraesCS1A01G107200 chr6B 100.000 28 0 0 6410 6437 701396278 701396305 1.300000e-02 52.8
86 TraesCS1A01G107200 chr4B 88.636 44 4 1 6372 6414 83468152 83468109 1.300000e-02 52.8
87 TraesCS1A01G107200 chr2D 100.000 28 0 0 6410 6437 179426770 179426797 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G107200 chr1A 104930396 104937457 7061 False 3161.750000 7805 96.621500 1 7062 4 chr1A.!!$F4 7061
1 TraesCS1A01G107200 chr1A 445509104 445510089 985 True 891.000000 891 83.065000 5067 6052 1 chr1A.!!$R2 985
2 TraesCS1A01G107200 chr1B 151074981 151080762 5781 False 1025.857143 2575 89.257429 99 7061 7 chr1B.!!$F2 6962
3 TraesCS1A01G107200 chr1B 465384405 465386052 1647 False 543.500000 819 80.555500 4324 6046 2 chr1B.!!$F3 1722
4 TraesCS1A01G107200 chr1D 100651025 100655924 4899 True 1852.250000 2471 93.498000 30 6385 4 chr1D.!!$R4 6355
5 TraesCS1A01G107200 chr1D 345405809 345406794 985 True 874.000000 874 82.762000 5067 6052 1 chr1D.!!$R3 985
6 TraesCS1A01G107200 chr1D 440926175 440927136 961 False 594.500000 649 90.572000 2104 3437 2 chr1D.!!$F2 1333
7 TraesCS1A01G107200 chr2A 551809912 551811193 1281 True 596.066667 1029 96.928333 2107 3435 3 chr2A.!!$R3 1328
8 TraesCS1A01G107200 chr2A 740036758 740037699 941 True 522.400000 819 95.386333 2107 3436 3 chr2A.!!$R4 1329
9 TraesCS1A01G107200 chr6A 91629124 91630232 1108 False 451.650000 941 97.976500 2103 3435 4 chr6A.!!$F1 1332
10 TraesCS1A01G107200 chr5D 264490033 264490996 963 False 423.800000 684 93.896000 2104 3437 3 chr5D.!!$F2 1333
11 TraesCS1A01G107200 chr3A 650193325 650194301 976 False 579.500000 676 89.525500 2104 3436 2 chr3A.!!$F1 1332
12 TraesCS1A01G107200 chr7D 622178438 622179001 563 False 355.200000 652 93.804500 2837 3435 2 chr7D.!!$F3 598
13 TraesCS1A01G107200 chr7A 43176777 43177770 993 False 553.000000 625 88.399000 2092 3443 2 chr7A.!!$F2 1351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 372 0.106335 TAAAACGGAAGGCGGTGACA 59.894 50.000 0.00 0.00 0.00 3.58 F
437 452 0.107703 CACCCATGCATCTACGGTGT 60.108 55.000 17.70 6.42 39.33 4.16 F
936 1014 0.528017 CACTGCTCTCGCCTGAACTA 59.472 55.000 0.00 0.00 34.43 2.24 F
1248 1326 2.501128 CACGCCATCTCCATCGGT 59.499 61.111 0.00 0.00 0.00 4.69 F
3194 3548 1.030488 CCGGAGAAGAGCGTGGAGTA 61.030 60.000 0.00 0.00 0.00 2.59 F
4310 4688 0.318275 GACCCTGAGACGATCGATGC 60.318 60.000 24.34 10.58 0.00 3.91 F
4716 5094 0.038526 AGAACTGGTACGCCAACTCG 60.039 55.000 0.00 0.00 45.51 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1781 1918 0.541863 GTCATGTACCCCCTGTGAGG 59.458 60.000 0.00 0.00 34.30 3.86 R
1803 1940 1.126079 TGTCGCGAAAGACGTTTCTC 58.874 50.000 12.06 0.00 43.70 2.87 R
2320 2480 2.101185 CTCGCGTGCATCTCTCGT 59.899 61.111 5.77 0.00 34.47 4.18 R
3223 3581 0.933700 CCTCCTCCTCCTCCTCTCTT 59.066 60.000 0.00 0.00 0.00 2.85 R
4318 4696 0.950555 TTGTCAGCGATCACCTGCAC 60.951 55.000 5.68 6.02 0.00 4.57 R
5650 6047 0.526211 CGTCGGTGGAGATCTTGACA 59.474 55.000 0.00 0.00 0.00 3.58 R
6670 7339 0.179029 AAACTTGACGGGTGTGAGGG 60.179 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.461119 TCGATGGCACCTCTTCCT 57.539 55.556 0.00 0.00 0.00 3.36
18 19 2.683916 TCGATGGCACCTCTTCCTT 58.316 52.632 0.00 0.00 0.00 3.36
19 20 0.250234 TCGATGGCACCTCTTCCTTG 59.750 55.000 0.00 0.00 0.00 3.61
20 21 0.745845 CGATGGCACCTCTTCCTTGG 60.746 60.000 0.00 0.00 0.00 3.61
21 22 0.620556 GATGGCACCTCTTCCTTGGA 59.379 55.000 0.00 0.00 0.00 3.53
22 23 1.213926 GATGGCACCTCTTCCTTGGAT 59.786 52.381 0.00 0.00 0.00 3.41
23 24 0.329261 TGGCACCTCTTCCTTGGATG 59.671 55.000 0.00 0.00 0.00 3.51
24 25 0.394899 GGCACCTCTTCCTTGGATGG 60.395 60.000 3.24 3.38 0.00 3.51
25 26 0.620556 GCACCTCTTCCTTGGATGGA 59.379 55.000 9.63 0.00 0.00 3.41
26 27 1.680249 GCACCTCTTCCTTGGATGGAC 60.680 57.143 9.63 1.12 35.58 4.02
27 28 1.912043 CACCTCTTCCTTGGATGGACT 59.088 52.381 9.63 0.00 35.58 3.85
28 29 2.093235 CACCTCTTCCTTGGATGGACTC 60.093 54.545 9.63 0.00 35.58 3.36
29 30 2.191400 CCTCTTCCTTGGATGGACTCA 58.809 52.381 3.24 0.00 35.58 3.41
30 31 2.776536 CCTCTTCCTTGGATGGACTCAT 59.223 50.000 3.24 0.00 35.58 2.90
31 32 3.433314 CCTCTTCCTTGGATGGACTCATG 60.433 52.174 3.24 0.00 35.58 3.07
32 33 2.507058 TCTTCCTTGGATGGACTCATGG 59.493 50.000 0.00 0.00 35.58 3.66
87 88 4.841617 TCGGCCTCTCCATCGCCT 62.842 66.667 0.00 0.00 40.70 5.52
90 91 2.107953 GCCTCTCCATCGCCTGTC 59.892 66.667 0.00 0.00 0.00 3.51
114 115 1.224592 CCGCCCTTAGCAGGACAAT 59.775 57.895 0.00 0.00 44.19 2.71
140 141 2.538132 CGCCGACGCATCATCGTATATA 60.538 50.000 0.00 0.00 43.42 0.86
141 142 3.629058 GCCGACGCATCATCGTATATAT 58.371 45.455 0.00 0.00 43.42 0.86
144 145 4.261031 CCGACGCATCATCGTATATATCCA 60.261 45.833 0.00 0.00 43.42 3.41
154 155 3.055385 TCGTATATATCCAGCCCAAAGCC 60.055 47.826 0.00 0.00 45.47 4.35
268 271 4.200092 GTTGGAGTCTTTGGACACTCTTT 58.800 43.478 0.00 0.00 44.36 2.52
279 282 3.007506 TGGACACTCTTTCCATAAAGCGA 59.992 43.478 0.00 0.00 41.64 4.93
328 340 5.893897 AACAACACACATTTGCCAAAATT 57.106 30.435 0.00 0.00 33.59 1.82
329 341 6.992063 AACAACACACATTTGCCAAAATTA 57.008 29.167 0.00 0.00 33.59 1.40
330 342 6.356757 ACAACACACATTTGCCAAAATTAC 57.643 33.333 0.00 0.00 33.59 1.89
331 343 5.877012 ACAACACACATTTGCCAAAATTACA 59.123 32.000 0.00 0.00 33.59 2.41
332 344 5.982465 ACACACATTTGCCAAAATTACAC 57.018 34.783 0.00 0.00 33.59 2.90
333 345 5.669477 ACACACATTTGCCAAAATTACACT 58.331 33.333 0.00 0.00 33.59 3.55
334 346 5.752955 ACACACATTTGCCAAAATTACACTC 59.247 36.000 0.00 0.00 33.59 3.51
335 347 5.984926 CACACATTTGCCAAAATTACACTCT 59.015 36.000 0.00 0.00 33.59 3.24
336 348 6.479660 CACACATTTGCCAAAATTACACTCTT 59.520 34.615 0.00 0.00 33.59 2.85
337 349 6.701400 ACACATTTGCCAAAATTACACTCTTC 59.299 34.615 0.00 0.00 33.59 2.87
338 350 6.146021 CACATTTGCCAAAATTACACTCTTCC 59.854 38.462 0.00 0.00 33.59 3.46
339 351 4.864704 TTGCCAAAATTACACTCTTCCC 57.135 40.909 0.00 0.00 0.00 3.97
340 352 3.838565 TGCCAAAATTACACTCTTCCCA 58.161 40.909 0.00 0.00 0.00 4.37
341 353 4.415596 TGCCAAAATTACACTCTTCCCAT 58.584 39.130 0.00 0.00 0.00 4.00
342 354 5.575157 TGCCAAAATTACACTCTTCCCATA 58.425 37.500 0.00 0.00 0.00 2.74
343 355 6.013379 TGCCAAAATTACACTCTTCCCATAA 58.987 36.000 0.00 0.00 0.00 1.90
344 356 6.495181 TGCCAAAATTACACTCTTCCCATAAA 59.505 34.615 0.00 0.00 0.00 1.40
345 357 7.015682 TGCCAAAATTACACTCTTCCCATAAAA 59.984 33.333 0.00 0.00 0.00 1.52
346 358 7.330946 GCCAAAATTACACTCTTCCCATAAAAC 59.669 37.037 0.00 0.00 0.00 2.43
347 359 7.540745 CCAAAATTACACTCTTCCCATAAAACG 59.459 37.037 0.00 0.00 0.00 3.60
348 360 6.753107 AATTACACTCTTCCCATAAAACGG 57.247 37.500 0.00 0.00 0.00 4.44
349 361 5.486735 TTACACTCTTCCCATAAAACGGA 57.513 39.130 0.00 0.00 0.00 4.69
350 362 4.360951 ACACTCTTCCCATAAAACGGAA 57.639 40.909 0.00 0.00 36.69 4.30
354 366 1.455248 TTCCCATAAAACGGAAGGCG 58.545 50.000 0.00 0.00 33.14 5.52
355 367 0.393267 TCCCATAAAACGGAAGGCGG 60.393 55.000 0.00 0.00 0.00 6.13
356 368 0.678684 CCCATAAAACGGAAGGCGGT 60.679 55.000 0.00 0.00 0.00 5.68
357 369 0.450184 CCATAAAACGGAAGGCGGTG 59.550 55.000 0.00 0.00 0.00 4.94
358 370 1.444836 CATAAAACGGAAGGCGGTGA 58.555 50.000 0.00 0.00 0.00 4.02
359 371 1.129811 CATAAAACGGAAGGCGGTGAC 59.870 52.381 0.00 0.00 0.00 3.67
360 372 0.106335 TAAAACGGAAGGCGGTGACA 59.894 50.000 0.00 0.00 0.00 3.58
361 373 0.748729 AAAACGGAAGGCGGTGACAA 60.749 50.000 0.00 0.00 0.00 3.18
362 374 0.748729 AAACGGAAGGCGGTGACAAA 60.749 50.000 0.00 0.00 0.00 2.83
363 375 0.748729 AACGGAAGGCGGTGACAAAA 60.749 50.000 0.00 0.00 0.00 2.44
364 376 0.536460 ACGGAAGGCGGTGACAAAAT 60.536 50.000 0.00 0.00 0.00 1.82
365 377 1.270947 ACGGAAGGCGGTGACAAAATA 60.271 47.619 0.00 0.00 0.00 1.40
366 378 1.129811 CGGAAGGCGGTGACAAAATAC 59.870 52.381 0.00 0.00 0.00 1.89
367 379 1.129811 GGAAGGCGGTGACAAAATACG 59.870 52.381 0.00 0.00 0.00 3.06
368 380 1.802365 GAAGGCGGTGACAAAATACGT 59.198 47.619 0.00 0.00 0.00 3.57
369 381 1.886886 AGGCGGTGACAAAATACGTT 58.113 45.000 0.00 0.00 0.00 3.99
370 382 1.533731 AGGCGGTGACAAAATACGTTG 59.466 47.619 0.00 0.00 34.52 4.10
371 383 1.323791 GCGGTGACAAAATACGTTGC 58.676 50.000 0.00 0.00 31.29 4.17
372 384 1.586908 CGGTGACAAAATACGTTGCG 58.413 50.000 0.00 0.00 31.29 4.85
373 385 1.192757 CGGTGACAAAATACGTTGCGA 59.807 47.619 0.00 0.00 31.29 5.10
374 386 2.348685 CGGTGACAAAATACGTTGCGAA 60.349 45.455 0.00 0.00 31.29 4.70
375 387 3.619729 GGTGACAAAATACGTTGCGAAA 58.380 40.909 0.00 0.00 31.29 3.46
376 388 4.036352 GGTGACAAAATACGTTGCGAAAA 58.964 39.130 0.00 0.00 31.29 2.29
377 389 4.085974 GGTGACAAAATACGTTGCGAAAAC 60.086 41.667 0.00 0.00 31.29 2.43
378 390 4.496183 GTGACAAAATACGTTGCGAAAACA 59.504 37.500 0.00 0.00 31.29 2.83
379 391 5.003590 GTGACAAAATACGTTGCGAAAACAA 59.996 36.000 0.00 0.00 31.29 2.83
380 392 5.003590 TGACAAAATACGTTGCGAAAACAAC 59.996 36.000 0.00 0.00 45.19 3.32
389 401 4.574527 TTGCGAAAACAACACACATTTG 57.425 36.364 0.00 0.00 0.00 2.32
390 402 2.346847 TGCGAAAACAACACACATTTGC 59.653 40.909 0.00 0.00 0.00 3.68
391 403 2.285544 GCGAAAACAACACACATTTGCC 60.286 45.455 0.00 0.00 0.00 4.52
392 404 2.926200 CGAAAACAACACACATTTGCCA 59.074 40.909 0.00 0.00 0.00 4.92
393 405 3.369147 CGAAAACAACACACATTTGCCAA 59.631 39.130 0.00 0.00 0.00 4.52
394 406 4.143030 CGAAAACAACACACATTTGCCAAA 60.143 37.500 0.00 0.00 0.00 3.28
395 407 5.615544 CGAAAACAACACACATTTGCCAAAA 60.616 36.000 0.00 0.00 0.00 2.44
396 408 5.893897 AAACAACACACATTTGCCAAAAT 57.106 30.435 0.00 0.00 36.39 1.82
405 417 2.593346 TTTGCCAAAATTGACACGCT 57.407 40.000 0.00 0.00 0.00 5.07
437 452 0.107703 CACCCATGCATCTACGGTGT 60.108 55.000 17.70 6.42 39.33 4.16
550 578 0.801251 GCTTCAGCTAGCTGTTGTGG 59.199 55.000 36.99 24.54 43.96 4.17
611 639 1.522569 GCGAACCCATAGCCTGAGT 59.477 57.895 0.00 0.00 0.00 3.41
617 645 2.043227 ACCCATAGCCTGAGTTAGCTC 58.957 52.381 0.00 0.00 40.56 4.09
692 721 1.419922 GACGTACGTGCATGGCTTG 59.580 57.895 28.16 0.00 0.00 4.01
728 757 3.873883 GCATGCAGAGCACGAGGC 61.874 66.667 14.21 0.00 43.04 4.70
758 833 0.537371 CTTTTCGTCCCAGCCCTTGT 60.537 55.000 0.00 0.00 0.00 3.16
765 840 2.686119 GTCCCAGCCCTTGTAGGTATA 58.314 52.381 0.00 0.00 31.93 1.47
804 881 2.098280 CCTCGCGCTAGCAGATATACAT 59.902 50.000 16.45 0.00 45.49 2.29
825 902 4.681074 TTGAGTCAATGACCAGTGTGTA 57.319 40.909 10.12 0.00 32.18 2.90
936 1014 0.528017 CACTGCTCTCGCCTGAACTA 59.472 55.000 0.00 0.00 34.43 2.24
940 1018 3.265791 CTGCTCTCGCCTGAACTATTTT 58.734 45.455 0.00 0.00 34.43 1.82
985 1063 6.686632 GCAAAAGCCTATAGTCACTAGTCCAT 60.687 42.308 0.00 0.00 0.00 3.41
992 1070 6.551601 CCTATAGTCACTAGTCCATCAAAGGT 59.448 42.308 0.00 0.00 0.00 3.50
1176 1254 3.071206 AGCGGGCACGATGAGAGT 61.071 61.111 15.48 0.00 44.60 3.24
1248 1326 2.501128 CACGCCATCTCCATCGGT 59.499 61.111 0.00 0.00 0.00 4.69
1288 1366 2.679837 ACGGAGTACAGGTATACACACG 59.320 50.000 5.01 6.04 41.94 4.49
1289 1367 2.540361 CGGAGTACAGGTATACACACGC 60.540 54.545 5.01 0.00 0.00 5.34
1314 1392 6.260493 CCTTTGATGTCAAATTTTGCTTTCCA 59.740 34.615 8.48 0.00 43.92 3.53
1554 1658 9.636789 TGTTTGGCTTCTAGTATATAGTACTGA 57.363 33.333 5.39 0.00 0.00 3.41
1665 1801 8.999220 TTTGCATGCATTTTTATCTTATGTGA 57.001 26.923 23.37 0.00 0.00 3.58
1781 1918 3.942748 TGGGTAATGTTATTCAGCGAACC 59.057 43.478 0.00 0.00 0.00 3.62
1864 2002 3.550842 GGCAATTCTTTCAAGCGAACACT 60.551 43.478 0.00 0.00 0.00 3.55
1993 2149 5.790593 TGTCTTAGCAAACGTTCTCCTAAT 58.209 37.500 0.00 0.00 0.00 1.73
3194 3548 1.030488 CCGGAGAAGAGCGTGGAGTA 61.030 60.000 0.00 0.00 0.00 2.59
3223 3581 2.627699 GGTGTTTGAGGAAATGCCAGAA 59.372 45.455 0.00 0.00 40.02 3.02
3252 3611 3.641436 GAGGAGGAGGAGGAAGAAGATTC 59.359 52.174 0.00 0.00 0.00 2.52
3499 3859 2.917713 TGGGTATTGAATTGGCCAGT 57.082 45.000 5.11 0.00 0.00 4.00
3633 3993 0.861837 GGCTTGAACTCGTGTGTCAG 59.138 55.000 0.00 0.00 0.00 3.51
4257 4631 7.811236 CGTACTGAGAATTACTACCAAAGTTGA 59.189 37.037 0.00 0.00 39.80 3.18
4310 4688 0.318275 GACCCTGAGACGATCGATGC 60.318 60.000 24.34 10.58 0.00 3.91
4318 4696 4.331258 CGATCGATGCTGTGCGCG 62.331 66.667 10.26 0.00 43.27 6.86
4712 5090 1.870580 CGTCAAGAACTGGTACGCCAA 60.871 52.381 0.00 0.00 45.51 4.52
4714 5092 1.414919 TCAAGAACTGGTACGCCAACT 59.585 47.619 0.00 0.00 45.51 3.16
4716 5094 0.038526 AGAACTGGTACGCCAACTCG 60.039 55.000 0.00 0.00 45.51 4.18
4717 5095 0.038892 GAACTGGTACGCCAACTCGA 60.039 55.000 0.00 0.00 45.51 4.04
4718 5096 0.606604 AACTGGTACGCCAACTCGAT 59.393 50.000 0.00 0.00 45.51 3.59
4720 5098 0.456221 CTGGTACGCCAACTCGATCT 59.544 55.000 0.00 0.00 45.51 2.75
4721 5099 0.172578 TGGTACGCCAACTCGATCTG 59.827 55.000 0.00 0.00 42.83 2.90
4723 5101 1.534175 GGTACGCCAACTCGATCTGAG 60.534 57.143 11.44 11.44 41.84 3.35
4724 5102 3.832619 GGTACGCCAACTCGATCTGAGA 61.833 54.545 17.60 0.00 39.95 3.27
4746 5124 0.111354 CGATCTCGTCGTACTACGCC 60.111 60.000 14.55 3.88 45.19 5.68
4747 5125 0.933097 GATCTCGTCGTACTACGCCA 59.067 55.000 14.55 4.36 42.21 5.69
4749 5127 1.372582 TCTCGTCGTACTACGCCATT 58.627 50.000 14.55 0.00 42.21 3.16
4750 5128 1.739466 TCTCGTCGTACTACGCCATTT 59.261 47.619 14.55 0.00 42.21 2.32
4752 5130 2.518949 TCGTCGTACTACGCCATTTTC 58.481 47.619 14.55 0.00 42.21 2.29
4753 5131 1.585214 CGTCGTACTACGCCATTTTCC 59.415 52.381 7.02 0.00 42.21 3.13
4754 5132 2.733227 CGTCGTACTACGCCATTTTCCT 60.733 50.000 7.02 0.00 42.21 3.36
4756 5134 3.061697 GTCGTACTACGCCATTTTCCTTG 59.938 47.826 3.57 0.00 42.21 3.61
4758 5136 3.306166 CGTACTACGCCATTTTCCTTGAG 59.694 47.826 0.00 0.00 33.65 3.02
4759 5137 3.695830 ACTACGCCATTTTCCTTGAGA 57.304 42.857 0.00 0.00 0.00 3.27
4761 5139 4.192317 ACTACGCCATTTTCCTTGAGATC 58.808 43.478 0.00 0.00 0.00 2.75
4762 5140 2.369394 ACGCCATTTTCCTTGAGATCC 58.631 47.619 0.00 0.00 0.00 3.36
4763 5141 2.025887 ACGCCATTTTCCTTGAGATCCT 60.026 45.455 0.00 0.00 0.00 3.24
4764 5142 2.615912 CGCCATTTTCCTTGAGATCCTC 59.384 50.000 0.00 0.00 0.00 3.71
4765 5143 3.624777 GCCATTTTCCTTGAGATCCTCA 58.375 45.455 0.00 0.00 38.87 3.86
4766 5144 4.019174 GCCATTTTCCTTGAGATCCTCAA 58.981 43.478 8.83 8.83 46.50 3.02
4781 5159 8.677300 TGAGATCCTCAATTTAGTACAAAATGC 58.323 33.333 0.00 0.00 37.57 3.56
4845 5223 7.655328 TGGATTTGACATTTGGTTTTGTATGAC 59.345 33.333 0.00 0.00 0.00 3.06
4851 5229 5.461737 ACATTTGGTTTTGTATGACTTTGCG 59.538 36.000 0.00 0.00 0.00 4.85
4959 5338 8.557029 GCAACGCTTACAGGTAATAGAAATTAT 58.443 33.333 0.00 0.00 30.42 1.28
4986 5383 6.567769 ACTTACAAAAATTGCACGAACTTG 57.432 33.333 0.00 0.00 0.00 3.16
4991 5388 4.829064 AAAATTGCACGAACTTGAGCTA 57.171 36.364 0.00 0.00 0.00 3.32
4993 5390 4.410492 AATTGCACGAACTTGAGCTAAG 57.590 40.909 0.00 0.00 42.30 2.18
5002 5399 4.612943 GAACTTGAGCTAAGACGGGATAG 58.387 47.826 9.14 0.00 39.76 2.08
5013 5410 4.792521 AGACGGGATAGATGCTGATTAC 57.207 45.455 0.00 0.00 0.00 1.89
5021 5418 7.704472 CGGGATAGATGCTGATTACTTAATCTC 59.296 40.741 9.78 3.73 41.93 2.75
5027 5424 8.646004 AGATGCTGATTACTTAATCTCTGCTTA 58.354 33.333 9.78 0.38 41.93 3.09
5030 5427 9.618890 TGCTGATTACTTAATCTCTGCTTAAAT 57.381 29.630 9.78 0.00 41.93 1.40
5040 5437 3.122948 TCTCTGCTTAAATTGTTCGACGC 59.877 43.478 0.00 0.00 0.00 5.19
5048 5445 7.069569 GCTTAAATTGTTCGACGCATGTATAT 58.930 34.615 0.00 0.00 0.00 0.86
5116 5513 0.099968 CGAACGTGATCTTCGGGCTA 59.900 55.000 13.39 0.00 37.46 3.93
5650 6047 3.379445 CCGGACTACGCCACCTGT 61.379 66.667 0.00 0.00 42.52 4.00
5806 6203 1.305297 AGTCCAGGTGGCGATCTCA 60.305 57.895 0.00 0.00 34.44 3.27
6074 6471 3.664107 CACCTCTGAGTTTGAATTCCGA 58.336 45.455 2.27 0.00 0.00 4.55
6081 6478 2.737252 GAGTTTGAATTCCGAGTTCGCT 59.263 45.455 2.27 0.00 38.18 4.93
6118 6519 1.000521 TGGATGGCCAAGCAGAAGG 60.001 57.895 10.96 0.00 42.49 3.46
6181 6582 6.772233 TGTATGAGGTGATGAATGGTTAATGG 59.228 38.462 0.00 0.00 0.00 3.16
6201 6602 7.812690 AATGGTTACTTTAGTTTCGGACTTT 57.187 32.000 0.00 0.00 39.86 2.66
6249 6650 3.328382 AAGCTCGTGGTGTAGCAAATA 57.672 42.857 0.00 0.00 41.32 1.40
6314 6715 2.435586 CGGGCCTTCAGCAGAGTG 60.436 66.667 0.84 0.00 46.50 3.51
6322 6723 0.321919 TTCAGCAGAGTGCCATCACC 60.322 55.000 0.00 0.00 46.52 4.02
6340 6741 2.639286 GTGAGGCTGTGTTTGGCG 59.361 61.111 0.00 0.00 35.01 5.69
6353 6883 1.098712 TTTGGCGCCGGTGGATTATC 61.099 55.000 23.90 0.00 0.00 1.75
6366 6896 6.293626 CCGGTGGATTATCTTAATCTTGCTTG 60.294 42.308 0.00 0.00 0.00 4.01
6385 6915 9.766277 CTTGCTTGTTTAATCTCTCTGATTTAC 57.234 33.333 0.00 0.00 42.28 2.01
6386 6916 9.507329 TTGCTTGTTTAATCTCTCTGATTTACT 57.493 29.630 0.00 0.00 42.28 2.24
6387 6917 9.507329 TGCTTGTTTAATCTCTCTGATTTACTT 57.493 29.630 0.00 0.00 42.28 2.24
6388 6918 9.980780 GCTTGTTTAATCTCTCTGATTTACTTC 57.019 33.333 0.00 0.00 42.28 3.01
6391 6921 9.877178 TGTTTAATCTCTCTGATTTACTTCCTC 57.123 33.333 0.00 0.00 42.28 3.71
6392 6922 9.320352 GTTTAATCTCTCTGATTTACTTCCTCC 57.680 37.037 0.00 0.00 42.28 4.30
6393 6923 5.782893 ATCTCTCTGATTTACTTCCTCCG 57.217 43.478 0.00 0.00 29.59 4.63
6394 6924 4.601084 TCTCTCTGATTTACTTCCTCCGT 58.399 43.478 0.00 0.00 0.00 4.69
6395 6925 4.641094 TCTCTCTGATTTACTTCCTCCGTC 59.359 45.833 0.00 0.00 0.00 4.79
6396 6926 3.700038 TCTCTGATTTACTTCCTCCGTCC 59.300 47.826 0.00 0.00 0.00 4.79
6397 6927 2.764572 TCTGATTTACTTCCTCCGTCCC 59.235 50.000 0.00 0.00 0.00 4.46
6398 6928 2.500098 CTGATTTACTTCCTCCGTCCCA 59.500 50.000 0.00 0.00 0.00 4.37
6399 6929 3.112263 TGATTTACTTCCTCCGTCCCAT 58.888 45.455 0.00 0.00 0.00 4.00
6400 6930 4.291792 TGATTTACTTCCTCCGTCCCATA 58.708 43.478 0.00 0.00 0.00 2.74
6401 6931 4.717778 TGATTTACTTCCTCCGTCCCATAA 59.282 41.667 0.00 0.00 0.00 1.90
6402 6932 5.368523 TGATTTACTTCCTCCGTCCCATAAT 59.631 40.000 0.00 0.00 0.00 1.28
6403 6933 6.555738 TGATTTACTTCCTCCGTCCCATAATA 59.444 38.462 0.00 0.00 0.00 0.98
6404 6934 7.236847 TGATTTACTTCCTCCGTCCCATAATAT 59.763 37.037 0.00 0.00 0.00 1.28
6405 6935 8.674925 ATTTACTTCCTCCGTCCCATAATATA 57.325 34.615 0.00 0.00 0.00 0.86
6406 6936 8.495160 TTTACTTCCTCCGTCCCATAATATAA 57.505 34.615 0.00 0.00 0.00 0.98
6407 6937 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
6408 6938 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
6409 6939 6.785963 ACTTCCTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
6410 6940 6.600882 TCCTCCGTCCCATAATATAAGAAC 57.399 41.667 0.00 0.00 0.00 3.01
6411 6941 6.079336 TCCTCCGTCCCATAATATAAGAACA 58.921 40.000 0.00 0.00 0.00 3.18
6412 6942 6.729100 TCCTCCGTCCCATAATATAAGAACAT 59.271 38.462 0.00 0.00 0.00 2.71
6413 6943 7.236847 TCCTCCGTCCCATAATATAAGAACATT 59.763 37.037 0.00 0.00 0.00 2.71
6414 6944 8.537016 CCTCCGTCCCATAATATAAGAACATTA 58.463 37.037 0.00 0.00 0.00 1.90
6416 6946 9.884636 TCCGTCCCATAATATAAGAACATTATG 57.115 33.333 7.15 7.15 41.59 1.90
6425 6955 8.848474 AATATAAGAACATTATGGAACGGAGG 57.152 34.615 0.00 0.00 0.00 4.30
6426 6956 3.560636 AGAACATTATGGAACGGAGGG 57.439 47.619 0.00 0.00 0.00 4.30
6427 6957 3.112263 AGAACATTATGGAACGGAGGGA 58.888 45.455 0.00 0.00 0.00 4.20
6428 6958 3.134804 AGAACATTATGGAACGGAGGGAG 59.865 47.826 0.00 0.00 0.00 4.30
6429 6959 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
6430 6960 3.649843 ACATTATGGAACGGAGGGAGTA 58.350 45.455 0.00 0.00 0.00 2.59
6437 6967 4.291792 TGGAACGGAGGGAGTATCATTTA 58.708 43.478 0.00 0.00 36.25 1.40
6444 6974 5.567025 CGGAGGGAGTATCATTTAGCTAACC 60.567 48.000 5.45 1.23 36.25 2.85
6448 6978 6.387220 AGGGAGTATCATTTAGCTAACCAACT 59.613 38.462 5.45 5.84 36.25 3.16
6478 7008 4.551702 ATTTTCCCACCAAATTGGCTAC 57.448 40.909 12.67 0.00 42.67 3.58
6479 7009 2.685106 TTCCCACCAAATTGGCTACA 57.315 45.000 12.67 0.00 42.67 2.74
6488 7018 5.182950 CACCAAATTGGCTACACAGATTACA 59.817 40.000 12.67 0.00 42.67 2.41
6516 7179 3.453717 AGCTGCTGGATGTTCATCTTCTA 59.546 43.478 0.00 0.00 0.00 2.10
6522 7186 3.118775 TGGATGTTCATCTTCTACCCACG 60.119 47.826 11.73 0.00 0.00 4.94
6536 7200 4.529219 CACGCAGCCGCCCATCTA 62.529 66.667 0.00 0.00 38.22 1.98
6539 7203 4.937431 GCAGCCGCCCATCTACCC 62.937 72.222 0.00 0.00 0.00 3.69
6540 7204 4.256180 CAGCCGCCCATCTACCCC 62.256 72.222 0.00 0.00 0.00 4.95
6547 7211 3.093835 CCATCTACCCCGGCCCAA 61.094 66.667 0.00 0.00 0.00 4.12
6548 7212 2.192175 CATCTACCCCGGCCCAAC 59.808 66.667 0.00 0.00 0.00 3.77
6549 7213 3.094498 ATCTACCCCGGCCCAACC 61.094 66.667 0.00 0.00 0.00 3.77
6575 7244 2.069465 CTCCGCCTCGTCATCCTCTG 62.069 65.000 0.00 0.00 0.00 3.35
6588 7257 0.338814 TCCTCTGAACCTCCCCCTAC 59.661 60.000 0.00 0.00 0.00 3.18
6590 7259 1.001248 TCTGAACCTCCCCCTACCG 59.999 63.158 0.00 0.00 0.00 4.02
6591 7260 2.686106 TGAACCTCCCCCTACCGC 60.686 66.667 0.00 0.00 0.00 5.68
6629 7298 3.081804 CCACAACCATCCACCTAAAGAC 58.918 50.000 0.00 0.00 0.00 3.01
6630 7299 3.081804 CACAACCATCCACCTAAAGACC 58.918 50.000 0.00 0.00 0.00 3.85
6631 7300 2.041216 ACAACCATCCACCTAAAGACCC 59.959 50.000 0.00 0.00 0.00 4.46
6632 7301 1.296002 ACCATCCACCTAAAGACCCC 58.704 55.000 0.00 0.00 0.00 4.95
6633 7302 0.551396 CCATCCACCTAAAGACCCCC 59.449 60.000 0.00 0.00 0.00 5.40
6650 7319 4.974721 CCACCAGGCCACCACCAC 62.975 72.222 5.01 0.00 0.00 4.16
6651 7320 4.974721 CACCAGGCCACCACCACC 62.975 72.222 5.01 0.00 0.00 4.61
6653 7322 4.974721 CCAGGCCACCACCACCAC 62.975 72.222 5.01 0.00 0.00 4.16
6654 7323 4.974721 CAGGCCACCACCACCACC 62.975 72.222 5.01 0.00 0.00 4.61
6656 7325 4.974721 GGCCACCACCACCACCTG 62.975 72.222 0.00 0.00 0.00 4.00
6658 7327 4.202574 CCACCACCACCACCTGCA 62.203 66.667 0.00 0.00 0.00 4.41
6659 7328 2.115910 CACCACCACCACCTGCAT 59.884 61.111 0.00 0.00 0.00 3.96
6660 7329 1.973281 CACCACCACCACCTGCATC 60.973 63.158 0.00 0.00 0.00 3.91
6661 7330 2.435663 CCACCACCACCTGCATCA 59.564 61.111 0.00 0.00 0.00 3.07
6662 7331 1.228521 CCACCACCACCTGCATCAA 60.229 57.895 0.00 0.00 0.00 2.57
6663 7332 1.526575 CCACCACCACCTGCATCAAC 61.527 60.000 0.00 0.00 0.00 3.18
6664 7333 0.538057 CACCACCACCTGCATCAACT 60.538 55.000 0.00 0.00 0.00 3.16
6665 7334 0.250901 ACCACCACCTGCATCAACTC 60.251 55.000 0.00 0.00 0.00 3.01
6666 7335 0.250858 CCACCACCTGCATCAACTCA 60.251 55.000 0.00 0.00 0.00 3.41
6667 7336 0.877071 CACCACCTGCATCAACTCAC 59.123 55.000 0.00 0.00 0.00 3.51
6668 7337 0.473755 ACCACCTGCATCAACTCACA 59.526 50.000 0.00 0.00 0.00 3.58
6669 7338 1.133823 ACCACCTGCATCAACTCACAA 60.134 47.619 0.00 0.00 0.00 3.33
6670 7339 1.267806 CCACCTGCATCAACTCACAAC 59.732 52.381 0.00 0.00 0.00 3.32
6671 7340 1.267806 CACCTGCATCAACTCACAACC 59.732 52.381 0.00 0.00 0.00 3.77
6672 7341 0.883833 CCTGCATCAACTCACAACCC 59.116 55.000 0.00 0.00 0.00 4.11
6673 7342 1.546323 CCTGCATCAACTCACAACCCT 60.546 52.381 0.00 0.00 0.00 4.34
6674 7343 1.808945 CTGCATCAACTCACAACCCTC 59.191 52.381 0.00 0.00 0.00 4.30
6675 7344 1.142667 TGCATCAACTCACAACCCTCA 59.857 47.619 0.00 0.00 0.00 3.86
6693 7362 1.483004 TCACACCCGTCAAGTTTCAGA 59.517 47.619 0.00 0.00 0.00 3.27
6694 7363 1.867233 CACACCCGTCAAGTTTCAGAG 59.133 52.381 0.00 0.00 0.00 3.35
6695 7364 1.485066 ACACCCGTCAAGTTTCAGAGT 59.515 47.619 0.00 0.00 0.00 3.24
6696 7365 2.135933 CACCCGTCAAGTTTCAGAGTC 58.864 52.381 0.00 0.00 0.00 3.36
6697 7366 1.760613 ACCCGTCAAGTTTCAGAGTCA 59.239 47.619 0.00 0.00 0.00 3.41
6708 7377 1.154131 CAGAGTCACAGTCTCGCCG 60.154 63.158 0.00 0.00 37.07 6.46
6710 7379 1.173444 AGAGTCACAGTCTCGCCGTT 61.173 55.000 0.00 0.00 37.07 4.44
6725 7394 2.743928 GTTGCCGGCACTCCTCAG 60.744 66.667 32.95 0.00 0.00 3.35
6738 7407 0.997363 TCCTCAGAGTCCCCGTCTTA 59.003 55.000 0.00 0.00 0.00 2.10
6745 7414 0.394080 AGTCCCCGTCTTAGGTCTCG 60.394 60.000 0.00 0.00 0.00 4.04
6762 7431 2.478746 GCGCAAAGCCGAAATCGA 59.521 55.556 0.30 0.00 40.81 3.59
6770 7439 1.445582 GCCGAAATCGACCGACACT 60.446 57.895 4.04 0.00 43.02 3.55
6771 7440 1.411493 GCCGAAATCGACCGACACTC 61.411 60.000 4.04 0.00 43.02 3.51
6834 7503 5.633830 AAAACAGGTAATGATGTGCTCAG 57.366 39.130 0.00 0.00 37.28 3.35
6855 7524 7.154191 TCAGAGAAATGGCCTAGGATTAATT 57.846 36.000 14.75 2.91 0.00 1.40
6867 7539 8.090831 GGCCTAGGATTAATTCAATTGAAATCC 58.909 37.037 28.22 28.22 38.40 3.01
6882 7554 4.933134 TGAAATCCCCAAATCATGAGACA 58.067 39.130 0.09 0.00 0.00 3.41
6891 7563 2.913054 ATCATGAGACAGCCGCACCG 62.913 60.000 0.09 0.00 0.00 4.94
6954 7634 3.127548 CCGTGTTACATAGACACCGTACT 59.872 47.826 2.20 0.00 43.38 2.73
6983 7663 7.865385 CAGAAACTAGATTGCTAGACTACCATC 59.135 40.741 6.92 0.00 45.71 3.51
7000 7680 4.634199 ACCATCAATTTGGACTTGCAAAG 58.366 39.130 0.00 0.00 44.40 2.77
7027 7707 4.157289 AGCAAGCTATTGTGAACCATTCTG 59.843 41.667 0.00 0.00 38.76 3.02
7030 7710 6.038603 GCAAGCTATTGTGAACCATTCTGATA 59.961 38.462 0.00 0.00 38.76 2.15
7057 7737 4.454504 ACCGGCAGTTTTACAAGATAACAG 59.545 41.667 0.00 0.00 0.00 3.16
7061 7741 5.181245 GGCAGTTTTACAAGATAACAGCTCA 59.819 40.000 0.00 0.00 35.46 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250234 CAAGGAAGAGGTGCCATCGA 59.750 55.000 0.00 0.00 0.00 3.59
4 5 0.329261 CATCCAAGGAAGAGGTGCCA 59.671 55.000 0.00 0.00 0.00 4.92
5 6 0.394899 CCATCCAAGGAAGAGGTGCC 60.395 60.000 0.00 0.00 0.00 5.01
6 7 0.620556 TCCATCCAAGGAAGAGGTGC 59.379 55.000 0.00 0.00 33.93 5.01
7 8 1.912043 AGTCCATCCAAGGAAGAGGTG 59.088 52.381 0.00 0.00 39.92 4.00
8 9 2.192263 GAGTCCATCCAAGGAAGAGGT 58.808 52.381 0.00 0.00 39.92 3.85
9 10 2.191400 TGAGTCCATCCAAGGAAGAGG 58.809 52.381 0.00 0.00 39.92 3.69
10 11 3.433314 CCATGAGTCCATCCAAGGAAGAG 60.433 52.174 0.00 0.00 39.92 2.85
11 12 2.507058 CCATGAGTCCATCCAAGGAAGA 59.493 50.000 0.00 0.00 39.92 2.87
12 13 2.507058 TCCATGAGTCCATCCAAGGAAG 59.493 50.000 0.00 0.00 39.92 3.46
13 14 2.239654 GTCCATGAGTCCATCCAAGGAA 59.760 50.000 0.00 0.00 39.92 3.36
14 15 1.839994 GTCCATGAGTCCATCCAAGGA 59.160 52.381 0.00 0.00 34.64 3.36
15 16 1.561076 TGTCCATGAGTCCATCCAAGG 59.439 52.381 0.00 0.00 0.00 3.61
16 17 3.572632 ATGTCCATGAGTCCATCCAAG 57.427 47.619 0.00 0.00 0.00 3.61
17 18 4.747623 GCATATGTCCATGAGTCCATCCAA 60.748 45.833 4.29 0.00 0.00 3.53
18 19 3.244665 GCATATGTCCATGAGTCCATCCA 60.245 47.826 4.29 0.00 0.00 3.41
19 20 3.341823 GCATATGTCCATGAGTCCATCC 58.658 50.000 4.29 0.00 0.00 3.51
20 21 3.008813 AGGCATATGTCCATGAGTCCATC 59.991 47.826 15.63 0.00 0.00 3.51
21 22 2.984604 AGGCATATGTCCATGAGTCCAT 59.015 45.455 15.63 0.00 0.00 3.41
22 23 2.105306 CAGGCATATGTCCATGAGTCCA 59.895 50.000 15.63 0.00 0.00 4.02
23 24 2.775890 CAGGCATATGTCCATGAGTCC 58.224 52.381 15.63 1.52 0.00 3.85
24 25 2.149578 GCAGGCATATGTCCATGAGTC 58.850 52.381 15.63 0.00 0.00 3.36
25 26 1.202855 GGCAGGCATATGTCCATGAGT 60.203 52.381 15.63 0.00 0.00 3.41
26 27 1.073444 AGGCAGGCATATGTCCATGAG 59.927 52.381 15.63 6.37 0.00 2.90
27 28 1.142936 AGGCAGGCATATGTCCATGA 58.857 50.000 15.63 0.00 0.00 3.07
28 29 1.244816 CAGGCAGGCATATGTCCATG 58.755 55.000 15.63 5.74 0.00 3.66
29 30 0.538977 GCAGGCAGGCATATGTCCAT 60.539 55.000 15.63 0.00 0.00 3.41
30 31 1.152902 GCAGGCAGGCATATGTCCA 60.153 57.895 15.63 0.00 0.00 4.02
31 32 1.152902 TGCAGGCAGGCATATGTCC 60.153 57.895 3.04 5.90 39.25 4.02
32 33 4.565360 TGCAGGCAGGCATATGTC 57.435 55.556 0.00 0.00 39.25 3.06
74 75 1.406065 ATGGACAGGCGATGGAGAGG 61.406 60.000 0.00 0.00 0.00 3.69
87 88 3.012119 TAAGGGCGGGCATGGACA 61.012 61.111 3.27 0.00 0.00 4.02
90 91 4.504596 TGCTAAGGGCGGGCATGG 62.505 66.667 3.27 0.00 45.43 3.66
114 115 1.215014 GATGATGCGTCGGCGATGAA 61.215 55.000 31.53 23.21 44.10 2.57
140 141 1.155859 TTGTGGCTTTGGGCTGGAT 59.844 52.632 0.00 0.00 41.46 3.41
141 142 1.832167 GTTGTGGCTTTGGGCTGGA 60.832 57.895 0.00 0.00 41.46 3.86
144 145 0.825010 CTCTGTTGTGGCTTTGGGCT 60.825 55.000 0.00 0.00 41.46 5.19
154 155 3.827625 CGGTCTAGAGTTCTCTGTTGTG 58.172 50.000 12.00 0.00 0.00 3.33
225 227 3.074412 CAGAAAGCACCCATAAACGTCT 58.926 45.455 0.00 0.00 0.00 4.18
231 233 3.181434 ACTCCAACAGAAAGCACCCATAA 60.181 43.478 0.00 0.00 0.00 1.90
233 235 1.145738 ACTCCAACAGAAAGCACCCAT 59.854 47.619 0.00 0.00 0.00 4.00
268 271 2.083774 CACTGCCTTTCGCTTTATGGA 58.916 47.619 0.00 0.00 38.78 3.41
279 282 4.606961 CAACGTATTTTGTCACTGCCTTT 58.393 39.130 0.00 0.00 0.00 3.11
328 340 5.486735 TTCCGTTTTATGGGAAGAGTGTA 57.513 39.130 0.00 0.00 37.40 2.90
329 341 4.360951 TTCCGTTTTATGGGAAGAGTGT 57.639 40.909 0.00 0.00 37.40 3.55
335 347 1.455248 CGCCTTCCGTTTTATGGGAA 58.545 50.000 0.00 0.00 39.92 3.97
336 348 0.393267 CCGCCTTCCGTTTTATGGGA 60.393 55.000 0.00 0.00 34.38 4.37
337 349 0.678684 ACCGCCTTCCGTTTTATGGG 60.679 55.000 0.00 0.00 34.38 4.00
338 350 0.450184 CACCGCCTTCCGTTTTATGG 59.550 55.000 0.00 0.00 34.38 2.74
339 351 1.129811 GTCACCGCCTTCCGTTTTATG 59.870 52.381 0.00 0.00 34.38 1.90
340 352 1.270947 TGTCACCGCCTTCCGTTTTAT 60.271 47.619 0.00 0.00 34.38 1.40
341 353 0.106335 TGTCACCGCCTTCCGTTTTA 59.894 50.000 0.00 0.00 34.38 1.52
342 354 0.748729 TTGTCACCGCCTTCCGTTTT 60.749 50.000 0.00 0.00 34.38 2.43
343 355 0.748729 TTTGTCACCGCCTTCCGTTT 60.749 50.000 0.00 0.00 34.38 3.60
344 356 0.748729 TTTTGTCACCGCCTTCCGTT 60.749 50.000 0.00 0.00 34.38 4.44
345 357 0.536460 ATTTTGTCACCGCCTTCCGT 60.536 50.000 0.00 0.00 34.38 4.69
346 358 1.129811 GTATTTTGTCACCGCCTTCCG 59.870 52.381 0.00 0.00 0.00 4.30
347 359 1.129811 CGTATTTTGTCACCGCCTTCC 59.870 52.381 0.00 0.00 0.00 3.46
348 360 1.802365 ACGTATTTTGTCACCGCCTTC 59.198 47.619 0.00 0.00 0.00 3.46
349 361 1.886886 ACGTATTTTGTCACCGCCTT 58.113 45.000 0.00 0.00 0.00 4.35
350 362 1.533731 CAACGTATTTTGTCACCGCCT 59.466 47.619 0.00 0.00 0.00 5.52
351 363 1.958417 CAACGTATTTTGTCACCGCC 58.042 50.000 0.00 0.00 0.00 6.13
352 364 1.323791 GCAACGTATTTTGTCACCGC 58.676 50.000 0.00 0.00 0.00 5.68
353 365 1.192757 TCGCAACGTATTTTGTCACCG 59.807 47.619 0.00 0.00 0.00 4.94
354 366 2.953640 TCGCAACGTATTTTGTCACC 57.046 45.000 0.00 0.00 0.00 4.02
355 367 4.496183 TGTTTTCGCAACGTATTTTGTCAC 59.504 37.500 0.00 0.00 0.00 3.67
356 368 4.659088 TGTTTTCGCAACGTATTTTGTCA 58.341 34.783 0.00 0.00 0.00 3.58
357 369 5.408746 GTTGTTTTCGCAACGTATTTTGTC 58.591 37.500 0.00 0.00 39.20 3.18
358 370 5.364376 GTTGTTTTCGCAACGTATTTTGT 57.636 34.783 0.00 0.00 39.20 2.83
367 379 4.322119 CAAATGTGTGTTGTTTTCGCAAC 58.678 39.130 2.38 2.38 46.36 4.17
368 380 3.181526 GCAAATGTGTGTTGTTTTCGCAA 60.182 39.130 0.00 0.00 0.00 4.85
369 381 2.346847 GCAAATGTGTGTTGTTTTCGCA 59.653 40.909 0.00 0.00 0.00 5.10
370 382 2.285544 GGCAAATGTGTGTTGTTTTCGC 60.286 45.455 0.00 0.00 0.00 4.70
371 383 2.926200 TGGCAAATGTGTGTTGTTTTCG 59.074 40.909 0.00 0.00 0.00 3.46
372 384 4.935885 TTGGCAAATGTGTGTTGTTTTC 57.064 36.364 0.00 0.00 0.00 2.29
373 385 5.695851 TTTTGGCAAATGTGTGTTGTTTT 57.304 30.435 14.29 0.00 0.00 2.43
374 386 5.893897 ATTTTGGCAAATGTGTGTTGTTT 57.106 30.435 14.29 0.00 30.89 2.83
375 387 5.413833 TCAATTTTGGCAAATGTGTGTTGTT 59.586 32.000 14.29 0.00 32.57 2.83
376 388 4.940046 TCAATTTTGGCAAATGTGTGTTGT 59.060 33.333 14.29 0.00 32.57 3.32
377 389 5.163784 TGTCAATTTTGGCAAATGTGTGTTG 60.164 36.000 14.29 11.50 40.28 3.33
378 390 4.940046 TGTCAATTTTGGCAAATGTGTGTT 59.060 33.333 14.29 0.21 40.28 3.32
379 391 4.332268 GTGTCAATTTTGGCAAATGTGTGT 59.668 37.500 14.29 0.00 45.39 3.72
380 392 4.550447 CGTGTCAATTTTGGCAAATGTGTG 60.550 41.667 14.29 9.47 45.39 3.82
381 393 3.555139 CGTGTCAATTTTGGCAAATGTGT 59.445 39.130 14.29 0.00 45.39 3.72
382 394 3.604314 GCGTGTCAATTTTGGCAAATGTG 60.604 43.478 14.29 14.21 45.39 3.21
383 395 2.543430 GCGTGTCAATTTTGGCAAATGT 59.457 40.909 14.29 2.98 45.39 2.71
384 396 2.801679 AGCGTGTCAATTTTGGCAAATG 59.198 40.909 14.29 10.26 45.39 2.32
385 397 2.801679 CAGCGTGTCAATTTTGGCAAAT 59.198 40.909 14.29 0.00 45.39 2.32
386 398 2.200067 CAGCGTGTCAATTTTGGCAAA 58.800 42.857 8.93 8.93 45.39 3.68
387 399 1.135915 ACAGCGTGTCAATTTTGGCAA 59.864 42.857 0.00 0.00 45.39 4.52
388 400 0.743688 ACAGCGTGTCAATTTTGGCA 59.256 45.000 0.00 0.00 41.08 4.92
389 401 1.130955 CACAGCGTGTCAATTTTGGC 58.869 50.000 1.24 0.00 0.00 4.52
390 402 2.772568 TCACAGCGTGTCAATTTTGG 57.227 45.000 8.22 0.00 34.79 3.28
391 403 2.468777 GCTTCACAGCGTGTCAATTTTG 59.531 45.455 8.22 0.00 35.91 2.44
392 404 2.731217 GCTTCACAGCGTGTCAATTTT 58.269 42.857 8.22 0.00 35.91 1.82
393 405 2.405892 GCTTCACAGCGTGTCAATTT 57.594 45.000 8.22 0.00 35.91 1.82
405 417 0.540133 ATGGGTGTGCATGCTTCACA 60.540 50.000 31.12 23.14 41.62 3.58
550 578 3.712881 GACCGCCGTTGTGCTGTC 61.713 66.667 0.00 0.00 38.11 3.51
566 594 1.953231 CTGGCTCATGTCCTGCTCGA 61.953 60.000 7.95 0.00 0.00 4.04
608 636 1.074752 GTGCAGTGCAGAGCTAACTC 58.925 55.000 20.42 0.00 40.08 3.01
611 639 3.222053 CTGTGCAGTGCAGAGCTAA 57.778 52.632 27.10 5.06 42.61 3.09
617 645 2.637589 CTGTGCTGTGCAGTGCAG 59.362 61.111 20.42 9.23 40.08 4.41
668 697 1.014044 CATGCACGTACGTCCAAGCT 61.014 55.000 17.15 0.00 0.00 3.74
692 721 3.473669 TGCATGACGATCACGCAC 58.526 55.556 0.00 0.00 40.91 5.34
728 757 2.173382 CGAAAAGTTGCCGCCTCG 59.827 61.111 0.00 0.00 0.00 4.63
758 833 2.041701 GCCGAGGGTGGTTTATACCTA 58.958 52.381 3.89 0.00 45.27 3.08
804 881 3.558931 ACACACTGGTCATTGACTCAA 57.441 42.857 16.02 0.00 32.47 3.02
819 896 2.729882 CACTTCACCGCTTACTACACAC 59.270 50.000 0.00 0.00 0.00 3.82
825 902 0.608640 CCCTCACTTCACCGCTTACT 59.391 55.000 0.00 0.00 0.00 2.24
936 1014 2.758979 CTGAGCTCCAATGGCAGAAAAT 59.241 45.455 12.15 0.00 0.00 1.82
940 1018 0.911045 TCCTGAGCTCCAATGGCAGA 60.911 55.000 12.15 0.00 0.00 4.26
970 1048 6.213600 ACAACCTTTGATGGACTAGTGACTAT 59.786 38.462 0.00 0.00 0.00 2.12
985 1063 1.202879 AGCCATCCGAACAACCTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
992 1070 1.737838 GATGACAGCCATCCGAACAA 58.262 50.000 0.00 0.00 44.59 2.83
1065 1143 2.317609 CCACTGGAACACCGCGAAG 61.318 63.158 8.23 0.91 0.00 3.79
1248 1326 1.118965 TGAAGAGGAAGGACGTGGCA 61.119 55.000 0.00 0.00 0.00 4.92
1314 1392 3.128415 GCAAGTGGCACCAAAAACATTTT 59.872 39.130 15.27 0.00 43.97 1.82
1468 1558 5.178996 TGTTGCATTGTACCATGATTTTTGC 59.821 36.000 10.98 0.00 0.00 3.68
1570 1705 7.762615 CACTCCTTCCGTAACAAATATAAGACA 59.237 37.037 0.00 0.00 0.00 3.41
1781 1918 0.541863 GTCATGTACCCCCTGTGAGG 59.458 60.000 0.00 0.00 34.30 3.86
1794 1931 3.753294 AAGACGTTTCTCTGGTCATGT 57.247 42.857 0.00 0.00 33.18 3.21
1803 1940 1.126079 TGTCGCGAAAGACGTTTCTC 58.874 50.000 12.06 0.00 43.70 2.87
1805 1942 2.572173 ATTGTCGCGAAAGACGTTTC 57.428 45.000 12.06 0.00 43.70 2.78
1864 2002 6.093771 ACAAAGAATTTTGCTGTGAAATTGCA 59.906 30.769 7.50 0.00 46.05 4.08
1938 2094 2.166254 CCTGGAAGCACGGCATTTATTT 59.834 45.455 0.00 0.00 0.00 1.40
2320 2480 2.101185 CTCGCGTGCATCTCTCGT 59.899 61.111 5.77 0.00 34.47 4.18
3194 3548 4.345859 TTTCCTCAAACACCTCGTATGT 57.654 40.909 0.00 0.00 0.00 2.29
3223 3581 0.933700 CCTCCTCCTCCTCCTCTCTT 59.066 60.000 0.00 0.00 0.00 2.85
3252 3611 0.178984 TGGGCCCACATATCAGCATG 60.179 55.000 24.45 0.00 37.54 4.06
3527 3887 7.223584 TCAAGTGAAAATCTAGTTCATCACCA 58.776 34.615 13.78 2.10 37.31 4.17
3673 4033 2.484889 GGCGAGGTACCTGAATTCATC 58.515 52.381 22.10 0.70 0.00 2.92
3674 4034 1.202533 CGGCGAGGTACCTGAATTCAT 60.203 52.381 22.10 0.00 0.00 2.57
3675 4035 0.174845 CGGCGAGGTACCTGAATTCA 59.825 55.000 22.10 8.12 0.00 2.57
4071 4445 1.226888 GCCGGTGATGGACTCGTAC 60.227 63.158 1.90 0.00 0.00 3.67
4269 4643 7.849447 GTCAGGGACATGCATGGAAAACATG 62.849 48.000 29.41 19.90 44.51 3.21
4274 4648 1.616725 GGTCAGGGACATGCATGGAAA 60.617 52.381 29.41 6.96 33.68 3.13
4277 4651 1.454479 GGGTCAGGGACATGCATGG 60.454 63.158 29.41 12.19 33.68 3.66
4280 4654 1.538629 TCAGGGTCAGGGACATGCA 60.539 57.895 0.00 0.00 33.68 3.96
4318 4696 0.950555 TTGTCAGCGATCACCTGCAC 60.951 55.000 5.68 6.02 0.00 4.57
4728 5106 3.725230 GGCGTAGTACGACGAGATC 57.275 57.895 29.09 12.89 46.05 2.75
4737 5115 4.501071 TCTCAAGGAAAATGGCGTAGTAC 58.499 43.478 0.00 0.00 0.00 2.73
4756 5134 8.677300 TGCATTTTGTACTAAATTGAGGATCTC 58.323 33.333 11.83 0.00 34.92 2.75
4758 5136 9.638239 TTTGCATTTTGTACTAAATTGAGGATC 57.362 29.630 11.83 0.00 0.00 3.36
4770 5148 9.762933 AAAGTGTATCAATTTGCATTTTGTACT 57.237 25.926 8.48 6.96 30.46 2.73
4808 5186 7.922278 CCAAATGTCAAATCCATCGATAATTGT 59.078 33.333 0.00 0.00 0.00 2.71
4816 5194 5.695816 ACAAAACCAAATGTCAAATCCATCG 59.304 36.000 0.00 0.00 0.00 3.84
4959 5338 7.251994 AGTTCGTGCAATTTTTGTAAGTTGTA 58.748 30.769 0.00 0.00 34.49 2.41
4969 5366 4.045636 AGCTCAAGTTCGTGCAATTTTT 57.954 36.364 0.00 0.00 0.00 1.94
4986 5383 2.823154 AGCATCTATCCCGTCTTAGCTC 59.177 50.000 0.00 0.00 0.00 4.09
4991 5388 4.835615 AGTAATCAGCATCTATCCCGTCTT 59.164 41.667 0.00 0.00 0.00 3.01
4993 5390 4.792521 AGTAATCAGCATCTATCCCGTC 57.207 45.455 0.00 0.00 0.00 4.79
5002 5399 7.727331 AAGCAGAGATTAAGTAATCAGCATC 57.273 36.000 12.42 2.93 43.43 3.91
5013 5410 7.632515 CGTCGAACAATTTAAGCAGAGATTAAG 59.367 37.037 0.00 0.00 0.00 1.85
5021 5418 3.181826 TGCGTCGAACAATTTAAGCAG 57.818 42.857 0.00 0.00 0.00 4.24
5027 5424 6.358118 ACATATACATGCGTCGAACAATTT 57.642 33.333 0.00 0.00 35.39 1.82
5030 5427 4.979815 CCTACATATACATGCGTCGAACAA 59.020 41.667 0.00 0.00 35.39 2.83
5040 5437 2.289382 TGCACCGGCCTACATATACATG 60.289 50.000 0.00 0.00 40.13 3.21
5104 5501 1.300233 CACCGCTAGCCCGAAGATC 60.300 63.158 9.66 0.00 0.00 2.75
5116 5513 1.515954 CGACTTGTATCCCACCGCT 59.484 57.895 0.00 0.00 0.00 5.52
5650 6047 0.526211 CGTCGGTGGAGATCTTGACA 59.474 55.000 0.00 0.00 0.00 3.58
5788 6185 1.305297 TGAGATCGCCACCTGGACT 60.305 57.895 0.00 0.00 37.39 3.85
6074 6471 2.740055 CAGCAAGCCGAGCGAACT 60.740 61.111 0.00 0.00 37.01 3.01
6084 6481 3.060615 CAGGTCCAGGCAGCAAGC 61.061 66.667 0.00 0.00 44.65 4.01
6118 6519 4.993905 AGGTTATTATTGGCAACGAAAGC 58.006 39.130 0.00 4.89 42.51 3.51
6181 6582 8.915654 TCGAATAAAGTCCGAAACTAAAGTAAC 58.084 33.333 0.00 0.00 37.17 2.50
6297 6698 2.435586 CACTCTGCTGAAGGCCCG 60.436 66.667 0.00 0.00 40.92 6.13
6314 6715 2.821366 CAGCCTCACGGTGATGGC 60.821 66.667 28.82 28.82 42.92 4.40
6322 6723 2.639286 GCCAAACACAGCCTCACG 59.361 61.111 0.00 0.00 0.00 4.35
6340 6741 4.083271 GCAAGATTAAGATAATCCACCGGC 60.083 45.833 0.00 1.75 0.00 6.13
6343 6744 7.573968 ACAAGCAAGATTAAGATAATCCACC 57.426 36.000 6.51 0.00 0.00 4.61
6353 6883 9.985318 CAGAGAGATTAAACAAGCAAGATTAAG 57.015 33.333 0.00 0.00 0.00 1.85
6366 6896 9.320352 GGAGGAAGTAAATCAGAGAGATTAAAC 57.680 37.037 0.00 0.00 46.09 2.01
6385 6915 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
6386 6916 6.555738 TGTTCTTATATTATGGGACGGAGGAA 59.444 38.462 0.00 0.00 0.00 3.36
6387 6917 6.079336 TGTTCTTATATTATGGGACGGAGGA 58.921 40.000 0.00 0.00 0.00 3.71
6388 6918 6.354794 TGTTCTTATATTATGGGACGGAGG 57.645 41.667 0.00 0.00 0.00 4.30
6390 6920 9.884636 CATAATGTTCTTATATTATGGGACGGA 57.115 33.333 0.00 0.00 39.90 4.69
6399 6929 9.938280 CCTCCGTTCCATAATGTTCTTATATTA 57.062 33.333 0.00 0.00 0.00 0.98
6400 6930 7.883311 CCCTCCGTTCCATAATGTTCTTATATT 59.117 37.037 0.00 0.00 0.00 1.28
6401 6931 7.236847 TCCCTCCGTTCCATAATGTTCTTATAT 59.763 37.037 0.00 0.00 0.00 0.86
6402 6932 6.555738 TCCCTCCGTTCCATAATGTTCTTATA 59.444 38.462 0.00 0.00 0.00 0.98
6403 6933 5.368523 TCCCTCCGTTCCATAATGTTCTTAT 59.631 40.000 0.00 0.00 0.00 1.73
6404 6934 4.717778 TCCCTCCGTTCCATAATGTTCTTA 59.282 41.667 0.00 0.00 0.00 2.10
6405 6935 3.521937 TCCCTCCGTTCCATAATGTTCTT 59.478 43.478 0.00 0.00 0.00 2.52
6406 6936 3.112263 TCCCTCCGTTCCATAATGTTCT 58.888 45.455 0.00 0.00 0.00 3.01
6407 6937 3.118371 ACTCCCTCCGTTCCATAATGTTC 60.118 47.826 0.00 0.00 0.00 3.18
6408 6938 2.844348 ACTCCCTCCGTTCCATAATGTT 59.156 45.455 0.00 0.00 0.00 2.71
6409 6939 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
6410 6940 4.283467 TGATACTCCCTCCGTTCCATAATG 59.717 45.833 0.00 0.00 0.00 1.90
6411 6941 4.489737 TGATACTCCCTCCGTTCCATAAT 58.510 43.478 0.00 0.00 0.00 1.28
6412 6942 3.918566 TGATACTCCCTCCGTTCCATAA 58.081 45.455 0.00 0.00 0.00 1.90
6413 6943 3.605726 TGATACTCCCTCCGTTCCATA 57.394 47.619 0.00 0.00 0.00 2.74
6414 6944 2.471815 TGATACTCCCTCCGTTCCAT 57.528 50.000 0.00 0.00 0.00 3.41
6415 6945 2.471815 ATGATACTCCCTCCGTTCCA 57.528 50.000 0.00 0.00 0.00 3.53
6416 6946 3.840124 AAATGATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
6417 6947 4.039366 AGCTAAATGATACTCCCTCCGTTC 59.961 45.833 0.00 0.00 0.00 3.95
6418 6948 3.967987 AGCTAAATGATACTCCCTCCGTT 59.032 43.478 0.00 0.00 0.00 4.44
6419 6949 3.577919 AGCTAAATGATACTCCCTCCGT 58.422 45.455 0.00 0.00 0.00 4.69
6420 6950 5.471257 GTTAGCTAAATGATACTCCCTCCG 58.529 45.833 7.99 0.00 0.00 4.63
6421 6951 5.307196 TGGTTAGCTAAATGATACTCCCTCC 59.693 44.000 7.99 0.96 0.00 4.30
6422 6952 6.420913 TGGTTAGCTAAATGATACTCCCTC 57.579 41.667 7.99 0.00 0.00 4.30
6423 6953 6.387220 AGTTGGTTAGCTAAATGATACTCCCT 59.613 38.462 7.99 0.00 0.00 4.20
6424 6954 6.592870 AGTTGGTTAGCTAAATGATACTCCC 58.407 40.000 7.99 2.44 0.00 4.30
6425 6955 8.507524 AAAGTTGGTTAGCTAAATGATACTCC 57.492 34.615 7.99 3.18 0.00 3.85
6465 6995 5.321102 TGTAATCTGTGTAGCCAATTTGGT 58.679 37.500 16.62 6.54 40.46 3.67
6478 7008 4.092529 CAGCAGCTAACACTGTAATCTGTG 59.907 45.833 0.00 0.00 45.00 3.66
6479 7009 4.248859 CAGCAGCTAACACTGTAATCTGT 58.751 43.478 0.00 0.00 39.96 3.41
6488 7018 2.038952 TGAACATCCAGCAGCTAACACT 59.961 45.455 0.00 0.00 0.00 3.55
6522 7186 4.937431 GGGTAGATGGGCGGCTGC 62.937 72.222 9.72 9.72 41.71 5.25
6555 7219 2.835431 AGGATGACGAGGCGGAGG 60.835 66.667 0.00 0.00 0.00 4.30
6556 7220 1.826054 AGAGGATGACGAGGCGGAG 60.826 63.158 0.00 0.00 0.00 4.63
6560 7229 0.179097 GGTTCAGAGGATGACGAGGC 60.179 60.000 0.00 0.00 37.77 4.70
6564 7233 0.461961 GGGAGGTTCAGAGGATGACG 59.538 60.000 0.00 0.00 37.77 4.35
6565 7234 0.833949 GGGGAGGTTCAGAGGATGAC 59.166 60.000 0.00 0.00 37.77 3.06
6575 7244 3.477346 GGCGGTAGGGGGAGGTTC 61.477 72.222 0.00 0.00 0.00 3.62
6612 7281 1.639108 GGGGTCTTTAGGTGGATGGTT 59.361 52.381 0.00 0.00 0.00 3.67
6633 7302 4.974721 GTGGTGGTGGCCTGGTGG 62.975 72.222 3.32 0.00 0.00 4.61
6634 7303 4.974721 GGTGGTGGTGGCCTGGTG 62.975 72.222 3.32 0.00 0.00 4.17
6636 7305 4.974721 GTGGTGGTGGTGGCCTGG 62.975 72.222 3.32 0.00 0.00 4.45
6637 7306 4.974721 GGTGGTGGTGGTGGCCTG 62.975 72.222 3.32 0.00 0.00 4.85
6639 7308 4.974721 CAGGTGGTGGTGGTGGCC 62.975 72.222 0.00 0.00 0.00 5.36
6641 7310 3.512154 ATGCAGGTGGTGGTGGTGG 62.512 63.158 0.00 0.00 0.00 4.61
6642 7311 1.973281 GATGCAGGTGGTGGTGGTG 60.973 63.158 0.00 0.00 0.00 4.17
6643 7312 2.005606 TTGATGCAGGTGGTGGTGGT 62.006 55.000 0.00 0.00 0.00 4.16
6644 7313 1.228521 TTGATGCAGGTGGTGGTGG 60.229 57.895 0.00 0.00 0.00 4.61
6645 7314 0.538057 AGTTGATGCAGGTGGTGGTG 60.538 55.000 0.00 0.00 0.00 4.17
6646 7315 0.250901 GAGTTGATGCAGGTGGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
6647 7316 0.250858 TGAGTTGATGCAGGTGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
6648 7317 0.877071 GTGAGTTGATGCAGGTGGTG 59.123 55.000 0.00 0.00 0.00 4.17
6649 7318 0.473755 TGTGAGTTGATGCAGGTGGT 59.526 50.000 0.00 0.00 0.00 4.16
6650 7319 1.267806 GTTGTGAGTTGATGCAGGTGG 59.732 52.381 0.00 0.00 0.00 4.61
6651 7320 1.267806 GGTTGTGAGTTGATGCAGGTG 59.732 52.381 0.00 0.00 0.00 4.00
6652 7321 1.609208 GGTTGTGAGTTGATGCAGGT 58.391 50.000 0.00 0.00 0.00 4.00
6653 7322 0.883833 GGGTTGTGAGTTGATGCAGG 59.116 55.000 0.00 0.00 0.00 4.85
6654 7323 1.808945 GAGGGTTGTGAGTTGATGCAG 59.191 52.381 0.00 0.00 0.00 4.41
6655 7324 1.142667 TGAGGGTTGTGAGTTGATGCA 59.857 47.619 0.00 0.00 0.00 3.96
6656 7325 1.537202 GTGAGGGTTGTGAGTTGATGC 59.463 52.381 0.00 0.00 0.00 3.91
6657 7326 2.549754 GTGTGAGGGTTGTGAGTTGATG 59.450 50.000 0.00 0.00 0.00 3.07
6658 7327 2.487265 GGTGTGAGGGTTGTGAGTTGAT 60.487 50.000 0.00 0.00 0.00 2.57
6659 7328 1.134220 GGTGTGAGGGTTGTGAGTTGA 60.134 52.381 0.00 0.00 0.00 3.18
6660 7329 1.308998 GGTGTGAGGGTTGTGAGTTG 58.691 55.000 0.00 0.00 0.00 3.16
6661 7330 0.182775 GGGTGTGAGGGTTGTGAGTT 59.817 55.000 0.00 0.00 0.00 3.01
6662 7331 1.837090 GGGTGTGAGGGTTGTGAGT 59.163 57.895 0.00 0.00 0.00 3.41
6663 7332 1.301716 CGGGTGTGAGGGTTGTGAG 60.302 63.158 0.00 0.00 0.00 3.51
6664 7333 2.035237 GACGGGTGTGAGGGTTGTGA 62.035 60.000 0.00 0.00 0.00 3.58
6665 7334 1.597027 GACGGGTGTGAGGGTTGTG 60.597 63.158 0.00 0.00 0.00 3.33
6666 7335 1.628238 TTGACGGGTGTGAGGGTTGT 61.628 55.000 0.00 0.00 0.00 3.32
6667 7336 0.884704 CTTGACGGGTGTGAGGGTTG 60.885 60.000 0.00 0.00 0.00 3.77
6668 7337 1.342672 ACTTGACGGGTGTGAGGGTT 61.343 55.000 0.00 0.00 0.00 4.11
6669 7338 1.342672 AACTTGACGGGTGTGAGGGT 61.343 55.000 0.00 0.00 0.00 4.34
6670 7339 0.179029 AAACTTGACGGGTGTGAGGG 60.179 55.000 0.00 0.00 0.00 4.30
6671 7340 1.226746 GAAACTTGACGGGTGTGAGG 58.773 55.000 0.00 0.00 0.00 3.86
6672 7341 1.867233 CTGAAACTTGACGGGTGTGAG 59.133 52.381 0.00 0.00 0.00 3.51
6673 7342 1.483004 TCTGAAACTTGACGGGTGTGA 59.517 47.619 0.00 0.00 0.00 3.58
6674 7343 1.867233 CTCTGAAACTTGACGGGTGTG 59.133 52.381 0.00 0.00 0.00 3.82
6675 7344 1.485066 ACTCTGAAACTTGACGGGTGT 59.515 47.619 0.00 0.00 0.00 4.16
6693 7362 1.007271 CAACGGCGAGACTGTGACT 60.007 57.895 16.62 0.00 38.15 3.41
6694 7363 2.658707 GCAACGGCGAGACTGTGAC 61.659 63.158 16.62 0.00 38.15 3.67
6695 7364 2.355837 GCAACGGCGAGACTGTGA 60.356 61.111 16.62 0.00 38.15 3.58
6696 7365 3.414700 GGCAACGGCGAGACTGTG 61.415 66.667 16.62 2.48 42.47 3.66
6708 7377 2.743928 CTGAGGAGTGCCGGCAAC 60.744 66.667 34.66 26.89 39.96 4.17
6710 7379 3.385384 CTCTGAGGAGTGCCGGCA 61.385 66.667 29.03 29.03 39.96 5.69
6725 7394 1.391577 GAGACCTAAGACGGGGACTC 58.608 60.000 0.00 0.00 37.28 3.36
6732 7401 0.731514 TTTGCGCGAGACCTAAGACG 60.732 55.000 12.10 0.00 0.00 4.18
6733 7402 0.992802 CTTTGCGCGAGACCTAAGAC 59.007 55.000 12.10 0.00 0.00 3.01
6734 7403 0.736325 GCTTTGCGCGAGACCTAAGA 60.736 55.000 12.10 0.00 0.00 2.10
6745 7414 1.863446 GTCGATTTCGGCTTTGCGC 60.863 57.895 0.00 0.00 41.36 6.09
6812 7481 5.316167 TCTGAGCACATCATTACCTGTTTT 58.684 37.500 0.00 0.00 37.28 2.43
6826 7495 0.694771 AGGCCATTTCTCTGAGCACA 59.305 50.000 5.01 0.00 0.00 4.57
6827 7496 2.559440 CTAGGCCATTTCTCTGAGCAC 58.441 52.381 5.01 0.00 0.00 4.40
6834 7503 7.823745 TTGAATTAATCCTAGGCCATTTCTC 57.176 36.000 5.01 0.00 0.00 2.87
6855 7524 6.668718 TCTCATGATTTGGGGATTTCAATTGA 59.331 34.615 3.38 3.38 0.00 2.57
6867 7539 1.019673 CGGCTGTCTCATGATTTGGG 58.980 55.000 0.00 0.00 0.00 4.12
6891 7563 0.673985 GTTTCCTGGTTTGCCACTCC 59.326 55.000 0.00 0.00 40.46 3.85
6928 7608 2.428171 GGTGTCTATGTAACACGGGCTA 59.572 50.000 0.00 0.00 46.33 3.93
6954 7634 7.284944 GGTAGTCTAGCAATCTAGTTTCTGGTA 59.715 40.741 4.15 0.00 42.28 3.25
6983 7663 4.919754 GCTCTACTTTGCAAGTCCAAATTG 59.080 41.667 0.00 0.00 41.77 2.32
7000 7680 4.253685 TGGTTCACAATAGCTTGCTCTAC 58.746 43.478 0.00 0.00 35.69 2.59
7012 7692 6.931281 CGGTAGATATCAGAATGGTTCACAAT 59.069 38.462 5.32 0.00 36.16 2.71
7027 7707 6.278363 TCTTGTAAAACTGCCGGTAGATATC 58.722 40.000 27.49 12.06 0.00 1.63
7030 7710 4.546829 TCTTGTAAAACTGCCGGTAGAT 57.453 40.909 27.49 12.24 0.00 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.