Multiple sequence alignment - TraesCS1A01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G107000 chr1A 100.000 6399 0 0 2764 9162 104588558 104582160 0.000000e+00 11817.0
1 TraesCS1A01G107000 chr1A 100.000 1360 0 0 979 2338 104590343 104588984 0.000000e+00 2512.0
2 TraesCS1A01G107000 chr1A 100.000 359 0 0 1 359 104591321 104590963 0.000000e+00 664.0
3 TraesCS1A01G107000 chr1A 85.821 536 65 2 4698 5233 475765695 475765171 8.040000e-155 558.0
4 TraesCS1A01G107000 chr1A 87.989 358 20 4 1984 2320 532382645 532383000 1.430000e-107 401.0
5 TraesCS1A01G107000 chr1A 80.761 473 60 12 4761 5233 475782998 475782557 3.170000e-89 340.0
6 TraesCS1A01G107000 chr1A 91.509 106 5 3 8695 8799 444771380 444771278 9.590000e-30 143.0
7 TraesCS1A01G107000 chr1A 89.720 107 7 4 8693 8799 445263862 445263964 5.770000e-27 134.0
8 TraesCS1A01G107000 chr1B 95.478 5285 181 19 3221 8477 151003278 150998024 0.000000e+00 8383.0
9 TraesCS1A01G107000 chr1B 90.225 757 48 9 979 1731 151004289 151003555 0.000000e+00 965.0
10 TraesCS1A01G107000 chr1B 86.965 537 59 8 4698 5234 502845788 502845263 2.200000e-165 593.0
11 TraesCS1A01G107000 chr1B 86.456 539 59 8 4698 5234 502935880 502935354 6.170000e-161 579.0
12 TraesCS1A01G107000 chr1B 96.226 318 12 0 1987 2304 212416941 212417258 1.050000e-143 521.0
13 TraesCS1A01G107000 chr1B 93.921 329 18 1 1987 2313 62808939 62809267 6.390000e-136 496.0
14 TraesCS1A01G107000 chr1B 83.582 536 72 10 4699 5234 502944571 502944052 1.070000e-133 488.0
15 TraesCS1A01G107000 chr1B 95.349 258 10 1 1731 1986 151003526 151003269 8.560000e-110 409.0
16 TraesCS1A01G107000 chr1B 93.210 162 10 1 154 315 151004582 151004422 4.280000e-58 237.0
17 TraesCS1A01G107000 chr1B 95.238 147 7 0 9016 9162 150997731 150997585 5.530000e-57 233.0
18 TraesCS1A01G107000 chr1B 94.286 105 5 1 8526 8629 150998027 150997923 9.520000e-35 159.0
19 TraesCS1A01G107000 chr1B 97.436 78 2 0 8932 9009 150997887 150997810 5.770000e-27 134.0
20 TraesCS1A01G107000 chr1D 97.711 4630 95 7 3221 7850 100817396 100822014 0.000000e+00 7952.0
21 TraesCS1A01G107000 chr1D 93.791 757 26 8 979 1731 100816378 100817117 0.000000e+00 1118.0
22 TraesCS1A01G107000 chr1D 92.779 637 29 6 7849 8477 100822066 100822693 0.000000e+00 905.0
23 TraesCS1A01G107000 chr1D 85.847 537 62 7 4698 5234 376323339 376322817 8.040000e-155 558.0
24 TraesCS1A01G107000 chr1D 85.130 538 69 6 4698 5234 376307620 376307093 2.910000e-149 540.0
25 TraesCS1A01G107000 chr1D 85.122 531 69 6 4704 5234 376296683 376296163 1.350000e-147 534.0
26 TraesCS1A01G107000 chr1D 91.429 280 16 4 1711 1986 100817130 100817405 2.410000e-100 377.0
27 TraesCS1A01G107000 chr1D 87.302 315 22 8 8695 8998 100823172 100823479 2.450000e-90 344.0
28 TraesCS1A01G107000 chr1D 87.372 293 16 3 82 359 100816018 100816304 5.340000e-82 316.0
29 TraesCS1A01G107000 chr1D 91.304 92 5 2 8708 8799 345269173 345269261 1.250000e-23 122.0
30 TraesCS1A01G107000 chr1D 80.315 127 2 12 8526 8649 100822690 100822796 3.550000e-09 75.0
31 TraesCS1A01G107000 chr7B 93.376 468 26 5 2764 3229 619586300 619585836 0.000000e+00 688.0
32 TraesCS1A01G107000 chr7B 95.498 422 19 0 2802 3223 580611060 580610639 0.000000e+00 675.0
33 TraesCS1A01G107000 chr7B 95.918 343 13 1 1978 2320 619587558 619587217 1.040000e-153 555.0
34 TraesCS1A01G107000 chr7B 95.362 345 16 0 1987 2331 568797367 568797711 4.840000e-152 549.0
35 TraesCS1A01G107000 chr5A 96.610 413 14 0 2808 3220 330197123 330196711 0.000000e+00 686.0
36 TraesCS1A01G107000 chr5A 96.238 319 11 1 1987 2305 330197766 330197449 1.050000e-143 521.0
37 TraesCS1A01G107000 chr5B 95.714 420 18 0 2802 3221 118542829 118543248 0.000000e+00 676.0
38 TraesCS1A01G107000 chr5B 98.677 378 5 0 2849 3226 373757199 373756822 0.000000e+00 671.0
39 TraesCS1A01G107000 chr5B 95.227 419 19 1 2802 3220 620823678 620823261 0.000000e+00 662.0
40 TraesCS1A01G107000 chr5B 98.148 324 6 0 1987 2310 373757873 373757550 4.800000e-157 566.0
41 TraesCS1A01G107000 chr5B 94.984 319 15 1 1987 2304 620824544 620824226 4.940000e-137 499.0
42 TraesCS1A01G107000 chr5B 77.461 772 134 28 4021 4770 678704297 678703544 8.500000e-115 425.0
43 TraesCS1A01G107000 chr5B 78.261 391 59 16 4395 4770 678998829 678999208 2.570000e-55 228.0
44 TraesCS1A01G107000 chr5B 78.486 251 38 9 4535 4770 678573756 678574005 5.730000e-32 150.0
45 TraesCS1A01G107000 chr5B 79.902 204 31 7 4516 4712 678703265 678703465 3.450000e-29 141.0
46 TraesCS1A01G107000 chr7A 97.222 396 11 0 2825 3220 672177285 672176890 0.000000e+00 671.0
47 TraesCS1A01G107000 chr7A 98.864 352 4 0 1987 2338 672178157 672177806 6.040000e-176 628.0
48 TraesCS1A01G107000 chr7A 83.333 60 10 0 255 314 668309943 668310002 1.000000e-03 56.5
49 TraesCS1A01G107000 chr2A 95.238 420 20 0 2802 3221 756126358 756126777 0.000000e+00 665.0
50 TraesCS1A01G107000 chr2B 95.444 417 16 1 2804 3220 118069465 118069052 0.000000e+00 662.0
51 TraesCS1A01G107000 chr4A 95.890 292 10 2 1987 2277 40240736 40240446 1.080000e-128 472.0
52 TraesCS1A01G107000 chr4A 77.445 767 131 32 4021 4770 632235380 632236121 3.960000e-113 420.0
53 TraesCS1A01G107000 chr5D 77.953 762 135 22 4021 4771 538095730 538096469 6.530000e-121 446.0
54 TraesCS1A01G107000 chr5D 77.224 562 88 19 4218 4771 538097009 538096480 9.000000e-75 292.0
55 TraesCS1A01G107000 chr4B 97.436 39 1 0 2300 2338 628077749 628077711 5.940000e-07 67.6
56 TraesCS1A01G107000 chr3D 97.368 38 1 0 2301 2338 323700046 323700083 2.140000e-06 65.8
57 TraesCS1A01G107000 chr2D 100.000 30 0 0 2301 2330 419038038 419038067 1.000000e-03 56.5
58 TraesCS1A01G107000 chr6B 92.105 38 3 0 278 315 655893713 655893750 5.000000e-03 54.7
59 TraesCS1A01G107000 chr3B 100.000 28 0 0 287 314 577359534 577359561 1.700000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G107000 chr1A 104582160 104591321 9161 True 4997.666667 11817 100.000000 1 9162 3 chr1A.!!$R4 9161
1 TraesCS1A01G107000 chr1A 475765171 475765695 524 True 558.000000 558 85.821000 4698 5233 1 chr1A.!!$R2 535
2 TraesCS1A01G107000 chr1B 150997585 151004582 6997 True 1502.857143 8383 94.460286 154 9162 7 chr1B.!!$R4 9008
3 TraesCS1A01G107000 chr1B 502845263 502845788 525 True 593.000000 593 86.965000 4698 5234 1 chr1B.!!$R1 536
4 TraesCS1A01G107000 chr1B 502935354 502935880 526 True 579.000000 579 86.456000 4698 5234 1 chr1B.!!$R2 536
5 TraesCS1A01G107000 chr1B 502944052 502944571 519 True 488.000000 488 83.582000 4699 5234 1 chr1B.!!$R3 535
6 TraesCS1A01G107000 chr1D 100816018 100823479 7461 False 1583.857143 7952 90.099857 82 8998 7 chr1D.!!$F2 8916
7 TraesCS1A01G107000 chr1D 376322817 376323339 522 True 558.000000 558 85.847000 4698 5234 1 chr1D.!!$R3 536
8 TraesCS1A01G107000 chr1D 376307093 376307620 527 True 540.000000 540 85.130000 4698 5234 1 chr1D.!!$R2 536
9 TraesCS1A01G107000 chr1D 376296163 376296683 520 True 534.000000 534 85.122000 4704 5234 1 chr1D.!!$R1 530
10 TraesCS1A01G107000 chr7B 619585836 619587558 1722 True 621.500000 688 94.647000 1978 3229 2 chr7B.!!$R2 1251
11 TraesCS1A01G107000 chr5A 330196711 330197766 1055 True 603.500000 686 96.424000 1987 3220 2 chr5A.!!$R1 1233
12 TraesCS1A01G107000 chr5B 373756822 373757873 1051 True 618.500000 671 98.412500 1987 3226 2 chr5B.!!$R2 1239
13 TraesCS1A01G107000 chr5B 620823261 620824544 1283 True 580.500000 662 95.105500 1987 3220 2 chr5B.!!$R3 1233
14 TraesCS1A01G107000 chr5B 678703544 678704297 753 True 425.000000 425 77.461000 4021 4770 1 chr5B.!!$R1 749
15 TraesCS1A01G107000 chr7A 672176890 672178157 1267 True 649.500000 671 98.043000 1987 3220 2 chr7A.!!$R1 1233
16 TraesCS1A01G107000 chr4A 632235380 632236121 741 False 420.000000 420 77.445000 4021 4770 1 chr4A.!!$F1 749
17 TraesCS1A01G107000 chr5D 538095730 538096469 739 False 446.000000 446 77.953000 4021 4771 1 chr5D.!!$F1 750
18 TraesCS1A01G107000 chr5D 538096480 538097009 529 True 292.000000 292 77.224000 4218 4771 1 chr5D.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.033796 ACACCTGCCCCATGATGAAG 60.034 55.000 0.00 0.0 0.00 3.02 F
29 30 0.107703 TGCCCCATGATGAAGACGAC 60.108 55.000 0.00 0.0 0.00 4.34 F
1739 1821 0.173255 GCAGTGCACACTTTGGTTGT 59.827 50.000 21.04 0.0 40.20 3.32 F
1883 1965 1.284198 AGATCAAGATGGCAGCAAGGT 59.716 47.619 5.19 0.0 0.00 3.50 F
3336 4836 2.231478 AGAAACGGCGAAGAAGAGATGA 59.769 45.455 16.62 0.0 0.00 2.92 F
4157 5664 2.744202 GGCATGCTTACGAATGATAGGG 59.256 50.000 18.92 0.0 0.00 3.53 F
4782 6329 3.194329 TGTGCAGTATGAGAACAGAGGAG 59.806 47.826 0.00 0.0 39.69 3.69 F
6108 7669 0.729116 AAATGGCAGAAGTCATCGCG 59.271 50.000 0.00 0.0 39.68 5.87 F
8019 9653 0.318699 TGTCACCGAGCTTTCAGTCG 60.319 55.000 0.00 0.0 35.91 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1528 0.740737 GGTCATCCCTGCAATTTCCG 59.259 55.000 0.00 0.0 0.00 4.30 R
1811 1893 1.611673 CCGCATCACTTCTCTTGGGTT 60.612 52.381 0.00 0.0 0.00 4.11 R
3289 4789 4.037565 GCAGGCTTGAAATCATCATCATCA 59.962 41.667 0.00 0.0 38.03 3.07 R
3789 5295 3.555956 CCGCGTTGATTTCAGTATTAGCT 59.444 43.478 4.92 0.0 0.00 3.32 R
5283 6838 0.322187 ACCATCGGTGCCCAACTAAC 60.322 55.000 0.00 0.0 32.98 2.34 R
5285 6840 1.277579 TAACCATCGGTGCCCAACTA 58.722 50.000 0.00 0.0 35.34 2.24 R
6631 8195 1.071605 GTCTCACATGGCACTTCGTC 58.928 55.000 0.00 0.0 0.00 4.20 R
8046 9680 0.462759 CCCGCTCTTTGACCTGATCC 60.463 60.000 0.00 0.0 0.00 3.36 R
9051 11113 0.322975 ATATCCGGCATGAGGACAGC 59.677 55.000 11.81 0.0 41.10 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.593048 AACAGACACCTGCCCCAT 58.407 55.556 0.00 0.00 44.16 4.00
18 19 1.075482 AACAGACACCTGCCCCATG 59.925 57.895 0.00 0.00 44.16 3.66
19 20 1.426251 AACAGACACCTGCCCCATGA 61.426 55.000 0.00 0.00 44.16 3.07
20 21 1.210204 ACAGACACCTGCCCCATGAT 61.210 55.000 0.00 0.00 44.16 2.45
21 22 0.750546 CAGACACCTGCCCCATGATG 60.751 60.000 0.00 0.00 33.07 3.07
22 23 0.915872 AGACACCTGCCCCATGATGA 60.916 55.000 0.00 0.00 0.00 2.92
23 24 0.034186 GACACCTGCCCCATGATGAA 60.034 55.000 0.00 0.00 0.00 2.57
24 25 0.033796 ACACCTGCCCCATGATGAAG 60.034 55.000 0.00 0.00 0.00 3.02
25 26 0.256752 CACCTGCCCCATGATGAAGA 59.743 55.000 0.00 0.00 0.00 2.87
26 27 0.257039 ACCTGCCCCATGATGAAGAC 59.743 55.000 0.00 0.00 0.00 3.01
27 28 0.816825 CCTGCCCCATGATGAAGACG 60.817 60.000 0.00 0.00 0.00 4.18
28 29 0.178767 CTGCCCCATGATGAAGACGA 59.821 55.000 0.00 0.00 0.00 4.20
29 30 0.107703 TGCCCCATGATGAAGACGAC 60.108 55.000 0.00 0.00 0.00 4.34
30 31 0.107703 GCCCCATGATGAAGACGACA 60.108 55.000 0.00 0.00 0.00 4.35
31 32 1.945387 CCCCATGATGAAGACGACAG 58.055 55.000 0.00 0.00 0.00 3.51
32 33 1.473965 CCCCATGATGAAGACGACAGG 60.474 57.143 0.00 0.00 0.00 4.00
33 34 1.473965 CCCATGATGAAGACGACAGGG 60.474 57.143 0.00 0.00 34.59 4.45
34 35 1.473965 CCATGATGAAGACGACAGGGG 60.474 57.143 0.00 0.00 31.78 4.79
35 36 0.179000 ATGATGAAGACGACAGGGGC 59.821 55.000 0.00 0.00 0.00 5.80
36 37 1.191489 TGATGAAGACGACAGGGGCA 61.191 55.000 0.00 0.00 0.00 5.36
37 38 0.741221 GATGAAGACGACAGGGGCAC 60.741 60.000 0.00 0.00 0.00 5.01
38 39 2.432628 GAAGACGACAGGGGCACG 60.433 66.667 0.00 0.00 0.00 5.34
39 40 2.915659 AAGACGACAGGGGCACGA 60.916 61.111 0.00 0.00 0.00 4.35
40 41 2.227089 GAAGACGACAGGGGCACGAT 62.227 60.000 0.00 0.00 0.00 3.73
41 42 2.507110 AAGACGACAGGGGCACGATG 62.507 60.000 0.00 0.00 0.00 3.84
42 43 3.296709 GACGACAGGGGCACGATGT 62.297 63.158 0.00 0.00 0.00 3.06
43 44 2.815211 CGACAGGGGCACGATGTG 60.815 66.667 0.00 0.00 36.51 3.21
52 53 2.738139 CACGATGTGCTGCGACCA 60.738 61.111 0.00 0.00 0.00 4.02
53 54 2.433145 ACGATGTGCTGCGACCAG 60.433 61.111 0.00 0.00 42.13 4.00
64 65 3.941188 CGACCAGCACCCACCAGT 61.941 66.667 0.00 0.00 0.00 4.00
65 66 2.281761 GACCAGCACCCACCAGTG 60.282 66.667 0.00 0.00 40.88 3.66
78 79 3.200593 CAGTGCTGGAGGCGATGC 61.201 66.667 0.00 0.00 45.43 3.91
79 80 3.709633 AGTGCTGGAGGCGATGCA 61.710 61.111 0.00 0.00 45.43 3.96
80 81 2.515523 GTGCTGGAGGCGATGCAT 60.516 61.111 0.00 0.00 45.43 3.96
119 120 4.496336 GGGAGCTGCCTCGCCAAT 62.496 66.667 18.47 0.00 43.21 3.16
120 121 3.207669 GGAGCTGCCTCGCCAATG 61.208 66.667 0.00 0.00 39.06 2.82
146 147 2.029649 GTGTTTCCCAGTGCTACGAGTA 60.030 50.000 0.00 0.00 0.00 2.59
182 183 3.288290 CTACGGCGAGCGGGAGAT 61.288 66.667 16.62 0.00 29.78 2.75
248 249 1.005394 GCAGACGACGAAAAGGGGA 60.005 57.895 0.00 0.00 0.00 4.81
341 357 3.684305 GCTGCCCATTCCAAAATACAAAC 59.316 43.478 0.00 0.00 0.00 2.93
352 368 1.303091 AATACAAACACTCGCCGCCC 61.303 55.000 0.00 0.00 0.00 6.13
1030 1046 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1031 1047 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1032 1048 2.018086 AGGAGGAGGAGGAGGAGGG 61.018 68.421 0.00 0.00 0.00 4.30
1212 1228 1.068083 CGACGATGAGGTGGGGATG 59.932 63.158 0.00 0.00 0.00 3.51
1217 1233 0.761802 GATGAGGTGGGGATGTCTCC 59.238 60.000 0.00 0.00 41.26 3.71
1231 1247 6.768381 GGGGATGTCTCCTTAATTCTTACTTG 59.232 42.308 0.00 0.00 41.74 3.16
1238 1254 6.147164 TCTCCTTAATTCTTACTTGCGTTGTG 59.853 38.462 0.00 0.00 0.00 3.33
1312 1328 3.119849 CGAGGGTTTAGGATTTGCTTGTG 60.120 47.826 0.00 0.00 0.00 3.33
1317 1333 0.326595 TAGGATTTGCTTGTGGCGGA 59.673 50.000 0.00 0.00 45.43 5.54
1399 1416 2.864589 TTTTTGCGATCGGGCGAC 59.135 55.556 18.30 0.00 35.06 5.19
1435 1455 3.960755 TCTGCGATTCATCTCCCTTTCTA 59.039 43.478 0.00 0.00 0.00 2.10
1438 1458 5.300752 TGCGATTCATCTCCCTTTCTATTC 58.699 41.667 0.00 0.00 0.00 1.75
1439 1459 5.163311 TGCGATTCATCTCCCTTTCTATTCA 60.163 40.000 0.00 0.00 0.00 2.57
1440 1460 5.407995 GCGATTCATCTCCCTTTCTATTCAG 59.592 44.000 0.00 0.00 0.00 3.02
1446 1466 9.618890 TTCATCTCCCTTTCTATTCAGTATTTG 57.381 33.333 0.00 0.00 0.00 2.32
1491 1514 8.816894 GGTTTGGGTTAGATGATATAGATCTCA 58.183 37.037 0.00 0.00 32.32 3.27
1550 1573 6.286758 TCTAGGGTTCTACTAGTGTGATACG 58.713 44.000 5.39 0.00 39.13 3.06
1619 1642 4.070716 TGCCACCTTTTGCAAATATTTGG 58.929 39.130 25.61 16.77 38.57 3.28
1629 1652 5.664294 TGCAAATATTTGGTGATGCTTCT 57.336 34.783 25.61 0.00 38.57 2.85
1645 1668 8.844244 GTGATGCTTCTCATTTTGGTCTAATAT 58.156 33.333 0.88 0.00 35.05 1.28
1677 1701 6.876789 TGTGATTTTCGTTTAGGATGAGCTTA 59.123 34.615 0.00 0.00 0.00 3.09
1695 1719 8.044060 TGAGCTTAGGTTGACTAATTTCATTG 57.956 34.615 0.00 0.00 40.71 2.82
1739 1821 0.173255 GCAGTGCACACTTTGGTTGT 59.827 50.000 21.04 0.00 40.20 3.32
1758 1840 6.920758 TGGTTGTCTAATTTTGTATGTTGCAC 59.079 34.615 0.00 0.00 0.00 4.57
1759 1841 7.145323 GGTTGTCTAATTTTGTATGTTGCACT 58.855 34.615 0.00 0.00 0.00 4.40
1803 1885 4.391830 GTGAATAATCGAGTTGTTCAGCCA 59.608 41.667 11.87 0.00 45.00 4.75
1830 1912 1.813513 AACCCAAGAGAAGTGATGCG 58.186 50.000 0.00 0.00 0.00 4.73
1883 1965 1.284198 AGATCAAGATGGCAGCAAGGT 59.716 47.619 5.19 0.00 0.00 3.50
1921 2003 3.244181 GCAAAACCATGGTGGAGACAATT 60.244 43.478 20.60 2.86 46.06 2.32
1978 2066 5.999205 TTCTGCAATGGTTTTATGGACAT 57.001 34.783 0.00 0.00 0.00 3.06
1979 2067 5.999205 TCTGCAATGGTTTTATGGACATT 57.001 34.783 0.00 0.00 34.13 2.71
1980 2068 6.357579 TCTGCAATGGTTTTATGGACATTT 57.642 33.333 0.00 0.00 31.67 2.32
1981 2069 6.767456 TCTGCAATGGTTTTATGGACATTTT 58.233 32.000 0.00 0.00 31.67 1.82
1982 2070 7.901029 TCTGCAATGGTTTTATGGACATTTTA 58.099 30.769 0.00 0.00 31.67 1.52
1983 2071 8.538701 TCTGCAATGGTTTTATGGACATTTTAT 58.461 29.630 0.00 0.00 31.67 1.40
1984 2072 9.814899 CTGCAATGGTTTTATGGACATTTTATA 57.185 29.630 0.00 0.00 31.67 0.98
2056 2145 5.861727 ACTACCACTTTACGATTTTGTCCT 58.138 37.500 0.00 0.00 0.00 3.85
3160 4660 4.276431 GTGGTAGTTTTCGGGACAAAATCA 59.724 41.667 0.00 0.00 0.00 2.57
3209 4709 4.882427 TCCGTGAATTGTGGTAGTTTTTGA 59.118 37.500 0.00 0.00 0.00 2.69
3221 4721 9.575868 TGTGGTAGTTTTTGATTAAATACTCCA 57.424 29.630 8.89 12.16 38.47 3.86
3298 4798 6.175471 TGTTTTGCAGACTAGTGATGATGAT 58.825 36.000 0.00 0.00 0.00 2.45
3336 4836 2.231478 AGAAACGGCGAAGAAGAGATGA 59.769 45.455 16.62 0.00 0.00 2.92
3530 5036 6.483640 AGTCTAATGACCTCTGTTGTTTCAAC 59.516 38.462 5.78 5.78 43.91 3.18
3911 5417 6.649141 TGTGTGTACCAGTATCTCACAATTTC 59.351 38.462 0.00 0.00 39.99 2.17
4157 5664 2.744202 GGCATGCTTACGAATGATAGGG 59.256 50.000 18.92 0.00 0.00 3.53
4252 5760 8.292448 GTGTTCAAATGATTCTCTTCTGCTTTA 58.708 33.333 0.00 0.00 0.00 1.85
4727 6273 4.408821 TGCCGGGAGCTTCGCAAT 62.409 61.111 2.18 0.00 44.23 3.56
4782 6329 3.194329 TGTGCAGTATGAGAACAGAGGAG 59.806 47.826 0.00 0.00 39.69 3.69
4802 6349 5.308237 AGGAGAGGACTATATTTTCGGCAAT 59.692 40.000 0.00 0.00 0.00 3.56
5028 6578 5.293560 ACTTACAAGAGAGAGCTGACAAAC 58.706 41.667 0.00 0.00 0.00 2.93
5283 6838 4.136796 TGTTCTTCAATCAACCTCTGGTG 58.863 43.478 0.00 0.00 35.34 4.17
5285 6840 4.437682 TCTTCAATCAACCTCTGGTGTT 57.562 40.909 0.00 0.00 35.34 3.32
5575 7131 6.712095 AGTTCAAGCAGAAATACTCATGTCAA 59.288 34.615 0.00 0.00 38.13 3.18
5722 7278 5.717654 TCATTTTGGTACAGGGGTTTAATCC 59.282 40.000 0.00 0.00 42.39 3.01
5952 7513 8.263640 CCCCATTTTGAATAATGATGTTTACCA 58.736 33.333 0.00 0.00 37.65 3.25
6071 7632 3.054361 AGGGGTCACTTAAAATCAGCGAT 60.054 43.478 0.00 0.00 0.00 4.58
6108 7669 0.729116 AAATGGCAGAAGTCATCGCG 59.271 50.000 0.00 0.00 39.68 5.87
6392 7953 2.415168 CGTTTCTGATGCGGTATGTTGT 59.585 45.455 0.00 0.00 0.00 3.32
6516 8077 7.669722 ACTTTGGTTATCTTGATTTCCTAGCAA 59.330 33.333 0.00 0.00 0.00 3.91
6631 8195 6.349280 CCAGGTAAATATCCAAACACACACTG 60.349 42.308 0.00 0.00 0.00 3.66
6944 8508 3.736252 GCGATGCTACAGATGACGTTAAT 59.264 43.478 0.00 0.00 0.00 1.40
7064 8628 3.663198 AGATAAAGCCAGTGATCCTCCT 58.337 45.455 0.00 0.00 0.00 3.69
7117 8687 3.001330 GGAATTCGTAGAAAGGTGCATCG 59.999 47.826 0.00 0.00 45.90 3.84
7129 8699 6.543831 AGAAAGGTGCATCGAAATAAAGCTAT 59.456 34.615 0.00 0.00 0.00 2.97
7477 9047 8.666821 AGTAAACCTTAGGTGTTAAATCTTCCT 58.333 33.333 3.99 0.00 35.34 3.36
7483 9055 8.727910 CCTTAGGTGTTAAATCTTCCTAAACAC 58.272 37.037 7.86 7.86 45.72 3.32
7509 9081 3.062639 GTGCCTCATTACTTGTGATGTCG 59.937 47.826 5.62 0.02 0.00 4.35
7556 9128 1.357137 TAGGTGTTGAGCCATGGACA 58.643 50.000 18.40 12.07 0.00 4.02
7685 9257 4.508662 CTCAAGACTGTACCCATTTCCTC 58.491 47.826 0.00 0.00 0.00 3.71
7729 9301 1.173913 CGATGGACTTTGTTTCCCCC 58.826 55.000 0.00 0.00 31.33 5.40
7784 9356 1.707427 AGTTCAGGGCACTTCCATCTT 59.293 47.619 0.00 0.00 36.21 2.40
7810 9382 5.649831 CCACAAGGCTAAAGAAGATAAGCTT 59.350 40.000 3.48 3.48 40.25 3.74
7890 9515 2.705658 TGATGACTGGTCTGAAGTTGGT 59.294 45.455 2.38 0.00 0.00 3.67
7977 9611 1.203994 CGTCACGTGGAAGGGTAAGAT 59.796 52.381 17.00 0.00 0.00 2.40
7980 9614 2.424601 TCACGTGGAAGGGTAAGATACG 59.575 50.000 17.00 0.00 36.28 3.06
8019 9653 0.318699 TGTCACCGAGCTTTCAGTCG 60.319 55.000 0.00 0.00 35.91 4.18
8035 9669 6.627395 TTCAGTCGATGTGTTAATTTGGTT 57.373 33.333 0.00 0.00 0.00 3.67
8046 9680 8.809159 TGTGTTAATTTGGTTTGTGATGTATG 57.191 30.769 0.00 0.00 0.00 2.39
8047 9681 7.869937 TGTGTTAATTTGGTTTGTGATGTATGG 59.130 33.333 0.00 0.00 0.00 2.74
8070 9704 2.115291 GGTCAAAGAGCGGGGATGC 61.115 63.158 0.00 0.00 0.00 3.91
8147 9781 3.123620 GCGCAAGAGGTGGCTCAG 61.124 66.667 0.30 0.00 43.02 3.35
8157 9791 2.363018 TGGCTCAGGGTCTCGGAG 60.363 66.667 0.00 0.00 40.06 4.63
8172 9810 0.944311 CGGAGGTGACTGGTTTGTCG 60.944 60.000 0.00 0.00 44.43 4.35
8208 9846 1.541588 GGGCTGTGACTGAAACCATTC 59.458 52.381 0.00 0.00 36.04 2.67
8224 9862 2.468831 CATTCGAGCTCCTAGTTCAGC 58.531 52.381 8.47 0.00 35.73 4.26
8240 9878 0.811616 CAGCTAGGCATCGTTGGTCC 60.812 60.000 0.00 0.00 0.00 4.46
8242 9880 1.813859 CTAGGCATCGTTGGTCCGA 59.186 57.895 0.00 0.00 41.73 4.55
8277 9922 7.862741 TGTTTGTAACAAGTGAGTAGATACG 57.137 36.000 0.00 0.00 38.72 3.06
8278 9923 6.864685 TGTTTGTAACAAGTGAGTAGATACGG 59.135 38.462 0.00 0.00 38.72 4.02
8279 9924 5.571784 TGTAACAAGTGAGTAGATACGGG 57.428 43.478 0.00 0.00 0.00 5.28
8280 9925 5.012239 TGTAACAAGTGAGTAGATACGGGT 58.988 41.667 0.00 0.00 0.00 5.28
8281 9926 6.179756 TGTAACAAGTGAGTAGATACGGGTA 58.820 40.000 0.00 0.00 0.00 3.69
8305 9950 3.038017 CAATTGACAAGTTGACTGCACG 58.962 45.455 10.54 0.00 0.00 5.34
8427 10073 3.445805 TCCGTGTGCTAACTATGTGATCA 59.554 43.478 0.00 0.00 0.00 2.92
8473 10119 1.601430 GCATAGCAAAGCAGTAGGAGC 59.399 52.381 0.00 0.00 0.00 4.70
8474 10120 2.216898 CATAGCAAAGCAGTAGGAGCC 58.783 52.381 0.00 0.00 0.00 4.70
8475 10121 1.573108 TAGCAAAGCAGTAGGAGCCT 58.427 50.000 0.00 0.00 0.00 4.58
8476 10122 0.251634 AGCAAAGCAGTAGGAGCCTC 59.748 55.000 0.00 0.00 0.00 4.70
8477 10123 0.251634 GCAAAGCAGTAGGAGCCTCT 59.748 55.000 0.00 0.00 0.00 3.69
8478 10124 1.742071 GCAAAGCAGTAGGAGCCTCTC 60.742 57.143 0.00 0.00 0.00 3.20
8479 10125 0.820871 AAAGCAGTAGGAGCCTCTCG 59.179 55.000 0.00 0.00 0.00 4.04
8480 10126 0.323908 AAGCAGTAGGAGCCTCTCGT 60.324 55.000 0.00 0.00 33.11 4.18
8481 10127 0.547075 AGCAGTAGGAGCCTCTCGTA 59.453 55.000 0.00 0.00 30.95 3.43
8482 10128 1.064611 AGCAGTAGGAGCCTCTCGTAA 60.065 52.381 0.00 0.00 33.57 3.18
8483 10129 1.065851 GCAGTAGGAGCCTCTCGTAAC 59.934 57.143 0.00 0.00 33.57 2.50
8484 10130 2.366533 CAGTAGGAGCCTCTCGTAACA 58.633 52.381 0.00 0.00 33.57 2.41
8485 10131 2.753452 CAGTAGGAGCCTCTCGTAACAA 59.247 50.000 0.00 0.00 33.57 2.83
8486 10132 3.018149 AGTAGGAGCCTCTCGTAACAAG 58.982 50.000 0.00 0.00 33.57 3.16
8487 10133 1.926108 AGGAGCCTCTCGTAACAAGT 58.074 50.000 0.00 0.00 0.00 3.16
8488 10134 1.819903 AGGAGCCTCTCGTAACAAGTC 59.180 52.381 0.00 0.00 0.00 3.01
8489 10135 1.819903 GGAGCCTCTCGTAACAAGTCT 59.180 52.381 0.00 0.00 0.00 3.24
8490 10136 2.416162 GGAGCCTCTCGTAACAAGTCTG 60.416 54.545 0.00 0.00 0.00 3.51
8491 10137 2.488545 GAGCCTCTCGTAACAAGTCTGA 59.511 50.000 0.00 0.00 0.00 3.27
8492 10138 3.093057 AGCCTCTCGTAACAAGTCTGAT 58.907 45.455 0.00 0.00 0.00 2.90
8493 10139 3.119316 AGCCTCTCGTAACAAGTCTGATG 60.119 47.826 0.00 0.00 0.00 3.07
8494 10140 3.182967 CCTCTCGTAACAAGTCTGATGC 58.817 50.000 0.00 0.00 0.00 3.91
8495 10141 3.119316 CCTCTCGTAACAAGTCTGATGCT 60.119 47.826 0.00 0.00 0.00 3.79
8496 10142 4.489810 CTCTCGTAACAAGTCTGATGCTT 58.510 43.478 0.00 0.00 0.00 3.91
8497 10143 5.393135 CCTCTCGTAACAAGTCTGATGCTTA 60.393 44.000 0.00 0.00 0.00 3.09
8498 10144 5.399858 TCTCGTAACAAGTCTGATGCTTAC 58.600 41.667 0.00 0.00 0.00 2.34
8499 10145 5.183331 TCTCGTAACAAGTCTGATGCTTACT 59.817 40.000 0.00 0.00 0.00 2.24
8500 10146 6.373495 TCTCGTAACAAGTCTGATGCTTACTA 59.627 38.462 0.00 0.00 0.00 1.82
8501 10147 6.320171 TCGTAACAAGTCTGATGCTTACTAC 58.680 40.000 0.00 0.00 0.00 2.73
8502 10148 6.150641 TCGTAACAAGTCTGATGCTTACTACT 59.849 38.462 0.00 0.00 0.00 2.57
8503 10149 6.807230 CGTAACAAGTCTGATGCTTACTACTT 59.193 38.462 0.00 0.00 0.00 2.24
8504 10150 7.008447 CGTAACAAGTCTGATGCTTACTACTTC 59.992 40.741 0.00 0.00 0.00 3.01
8505 10151 5.725362 ACAAGTCTGATGCTTACTACTTCC 58.275 41.667 0.00 0.00 0.00 3.46
8506 10152 5.482175 ACAAGTCTGATGCTTACTACTTCCT 59.518 40.000 0.00 0.00 0.00 3.36
8507 10153 5.845391 AGTCTGATGCTTACTACTTCCTC 57.155 43.478 0.00 0.00 0.00 3.71
8508 10154 5.515106 AGTCTGATGCTTACTACTTCCTCT 58.485 41.667 0.00 0.00 0.00 3.69
8509 10155 5.359576 AGTCTGATGCTTACTACTTCCTCTG 59.640 44.000 0.00 0.00 0.00 3.35
8510 10156 5.126384 GTCTGATGCTTACTACTTCCTCTGT 59.874 44.000 0.00 0.00 0.00 3.41
8511 10157 6.319152 GTCTGATGCTTACTACTTCCTCTGTA 59.681 42.308 0.00 0.00 0.00 2.74
8512 10158 6.890268 TCTGATGCTTACTACTTCCTCTGTAA 59.110 38.462 0.00 0.00 0.00 2.41
8513 10159 7.396339 TCTGATGCTTACTACTTCCTCTGTAAA 59.604 37.037 0.00 0.00 0.00 2.01
8514 10160 7.548097 TGATGCTTACTACTTCCTCTGTAAAG 58.452 38.462 0.00 0.00 0.00 1.85
8515 10161 7.396339 TGATGCTTACTACTTCCTCTGTAAAGA 59.604 37.037 0.00 0.00 0.00 2.52
8516 10162 7.534723 TGCTTACTACTTCCTCTGTAAAGAA 57.465 36.000 0.00 0.00 0.00 2.52
8517 10163 7.959175 TGCTTACTACTTCCTCTGTAAAGAAA 58.041 34.615 0.00 0.00 0.00 2.52
8518 10164 8.594550 TGCTTACTACTTCCTCTGTAAAGAAAT 58.405 33.333 0.00 0.00 0.00 2.17
8576 10222 7.726216 TGTACAATCATTGATAAGACGGATCT 58.274 34.615 3.79 0.00 36.42 2.75
8649 10298 9.685276 ATGGATTATCTGTGTTATCTCAAACAA 57.315 29.630 0.00 0.00 40.85 2.83
8650 10299 9.685276 TGGATTATCTGTGTTATCTCAAACAAT 57.315 29.630 0.00 0.00 40.85 2.71
8671 10320 7.410800 CAATTAATTGTTTGCAAGCTCTGAA 57.589 32.000 18.32 0.64 38.10 3.02
8672 10321 7.853524 CAATTAATTGTTTGCAAGCTCTGAAA 58.146 30.769 18.32 0.27 38.10 2.69
8673 10322 6.826893 TTAATTGTTTGCAAGCTCTGAAAC 57.173 33.333 14.67 0.78 38.10 2.78
8674 10323 4.660789 ATTGTTTGCAAGCTCTGAAACT 57.339 36.364 14.67 0.00 38.10 2.66
8675 10324 3.425577 TGTTTGCAAGCTCTGAAACTG 57.574 42.857 14.67 0.00 31.63 3.16
8676 10325 2.099592 TGTTTGCAAGCTCTGAAACTGG 59.900 45.455 14.67 0.00 31.63 4.00
8677 10326 2.057137 TTGCAAGCTCTGAAACTGGT 57.943 45.000 0.00 0.00 0.00 4.00
8678 10327 1.311859 TGCAAGCTCTGAAACTGGTG 58.688 50.000 0.00 0.00 0.00 4.17
8679 10328 0.595095 GCAAGCTCTGAAACTGGTGG 59.405 55.000 0.00 0.00 0.00 4.61
8680 10329 1.242076 CAAGCTCTGAAACTGGTGGG 58.758 55.000 0.00 0.00 0.00 4.61
8681 10330 0.111253 AAGCTCTGAAACTGGTGGGG 59.889 55.000 0.00 0.00 0.00 4.96
8682 10331 1.973812 GCTCTGAAACTGGTGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
8683 10332 1.672356 CTCTGAAACTGGTGGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
8684 10333 2.111999 CTCTGAAACTGGTGGGGCGA 62.112 60.000 0.00 0.00 0.00 5.54
8685 10334 1.002134 CTGAAACTGGTGGGGCGAT 60.002 57.895 0.00 0.00 0.00 4.58
8686 10335 0.609131 CTGAAACTGGTGGGGCGATT 60.609 55.000 0.00 0.00 0.00 3.34
8687 10336 0.693622 TGAAACTGGTGGGGCGATTA 59.306 50.000 0.00 0.00 0.00 1.75
8688 10337 1.074084 TGAAACTGGTGGGGCGATTAA 59.926 47.619 0.00 0.00 0.00 1.40
8689 10338 1.471287 GAAACTGGTGGGGCGATTAAC 59.529 52.381 0.00 0.00 0.00 2.01
8690 10339 0.402504 AACTGGTGGGGCGATTAACA 59.597 50.000 0.00 0.00 0.00 2.41
8691 10340 0.402504 ACTGGTGGGGCGATTAACAA 59.597 50.000 0.00 0.00 0.00 2.83
8692 10341 1.005450 ACTGGTGGGGCGATTAACAAT 59.995 47.619 0.00 0.00 0.00 2.71
8693 10342 1.676006 CTGGTGGGGCGATTAACAATC 59.324 52.381 0.00 0.00 34.52 2.67
8729 10708 3.465990 TGCATAGCAGCAGGAGAAC 57.534 52.632 0.00 0.00 40.11 3.01
8730 10709 0.107508 TGCATAGCAGCAGGAGAACC 60.108 55.000 0.00 0.00 40.11 3.62
8739 10720 4.974438 AGGAGAACCCCCACGGCA 62.974 66.667 0.00 0.00 36.73 5.69
8748 10729 4.722700 CCCACGGCACAGGGGAAG 62.723 72.222 0.00 0.00 45.08 3.46
8749 10730 3.953775 CCACGGCACAGGGGAAGT 61.954 66.667 0.00 0.00 36.61 3.01
8750 10731 2.589157 CCACGGCACAGGGGAAGTA 61.589 63.158 0.00 0.00 36.61 2.24
8751 10732 1.375523 CACGGCACAGGGGAAGTAC 60.376 63.158 0.00 0.00 0.00 2.73
8752 10733 1.535687 ACGGCACAGGGGAAGTACT 60.536 57.895 0.00 0.00 0.00 2.73
8789 10770 8.997323 AGTTTTCAGATTACAGAAGAATCACAG 58.003 33.333 0.00 0.00 36.03 3.66
8804 10785 5.745227 GAATCACAGGTTCAGGGATTCTAA 58.255 41.667 10.11 0.00 40.24 2.10
8810 10791 4.101741 CAGGTTCAGGGATTCTAAGTAGGG 59.898 50.000 0.00 0.00 0.00 3.53
8838 10819 2.838467 CCCAGGATGCCTCCCCATC 61.838 68.421 4.15 0.00 43.21 3.51
8845 10826 0.403304 ATGCCTCCCCATCCATGGTA 60.403 55.000 12.58 0.00 46.65 3.25
8848 10829 1.147817 GCCTCCCCATCCATGGTATTT 59.852 52.381 12.58 0.00 46.65 1.40
8854 10835 3.139025 CCCCATCCATGGTATTTCAGTCT 59.861 47.826 12.58 0.00 46.65 3.24
8868 10849 8.080417 GGTATTTCAGTCTAAAAGACCAAAACC 58.920 37.037 7.32 9.16 46.18 3.27
8876 10857 8.437575 AGTCTAAAAGACCAAAACCTAAGATCA 58.562 33.333 3.49 0.00 46.18 2.92
8890 10871 4.099266 CCTAAGATCAGCAGTAGCAGAACT 59.901 45.833 0.00 0.00 45.49 3.01
9009 10999 2.506472 GGCCGGACCTCCAAGATC 59.494 66.667 5.05 0.00 35.14 2.75
9010 11000 2.506472 GCCGGACCTCCAAGATCC 59.494 66.667 5.05 0.00 35.14 3.36
9011 11001 3.108288 GCCGGACCTCCAAGATCCC 62.108 68.421 5.05 0.00 35.14 3.85
9013 11003 1.756950 CGGACCTCCAAGATCCCGA 60.757 63.158 0.00 0.00 39.31 5.14
9014 11004 1.823976 GGACCTCCAAGATCCCGAC 59.176 63.158 0.00 0.00 35.64 4.79
9027 11089 0.393448 TCCCGACATCCGTTGTTTCA 59.607 50.000 0.00 0.00 39.18 2.69
9038 11100 1.541233 CGTTGTTTCAGAGGACCTGCT 60.541 52.381 0.00 0.00 42.62 4.24
9100 11162 4.792087 GGTTCGCCTTTGAGTGGA 57.208 55.556 0.00 0.00 0.00 4.02
9102 11164 1.566018 GGTTCGCCTTTGAGTGGACG 61.566 60.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.210204 ATCATGGGGCAGGTGTCTGT 61.210 55.000 0.00 0.00 42.78 3.41
2 3 0.750546 CATCATGGGGCAGGTGTCTG 60.751 60.000 0.00 0.00 43.64 3.51
4 5 0.034186 TTCATCATGGGGCAGGTGTC 60.034 55.000 0.00 0.00 0.00 3.67
5 6 0.033796 CTTCATCATGGGGCAGGTGT 60.034 55.000 0.00 0.00 0.00 4.16
6 7 0.256752 TCTTCATCATGGGGCAGGTG 59.743 55.000 0.00 0.00 0.00 4.00
7 8 0.257039 GTCTTCATCATGGGGCAGGT 59.743 55.000 0.00 0.00 0.00 4.00
8 9 0.816825 CGTCTTCATCATGGGGCAGG 60.817 60.000 0.00 0.00 0.00 4.85
9 10 0.178767 TCGTCTTCATCATGGGGCAG 59.821 55.000 0.00 0.00 0.00 4.85
10 11 0.107703 GTCGTCTTCATCATGGGGCA 60.108 55.000 0.00 0.00 0.00 5.36
11 12 0.107703 TGTCGTCTTCATCATGGGGC 60.108 55.000 0.00 0.00 0.00 5.80
12 13 1.473965 CCTGTCGTCTTCATCATGGGG 60.474 57.143 0.00 0.00 0.00 4.96
13 14 1.473965 CCCTGTCGTCTTCATCATGGG 60.474 57.143 0.00 0.00 0.00 4.00
14 15 1.473965 CCCCTGTCGTCTTCATCATGG 60.474 57.143 0.00 0.00 0.00 3.66
15 16 1.945387 CCCCTGTCGTCTTCATCATG 58.055 55.000 0.00 0.00 0.00 3.07
16 17 0.179000 GCCCCTGTCGTCTTCATCAT 59.821 55.000 0.00 0.00 0.00 2.45
17 18 1.191489 TGCCCCTGTCGTCTTCATCA 61.191 55.000 0.00 0.00 0.00 3.07
18 19 0.741221 GTGCCCCTGTCGTCTTCATC 60.741 60.000 0.00 0.00 0.00 2.92
19 20 1.296715 GTGCCCCTGTCGTCTTCAT 59.703 57.895 0.00 0.00 0.00 2.57
20 21 2.741092 GTGCCCCTGTCGTCTTCA 59.259 61.111 0.00 0.00 0.00 3.02
21 22 2.227089 ATCGTGCCCCTGTCGTCTTC 62.227 60.000 0.00 0.00 0.00 2.87
22 23 2.283529 ATCGTGCCCCTGTCGTCTT 61.284 57.895 0.00 0.00 0.00 3.01
23 24 2.680352 ATCGTGCCCCTGTCGTCT 60.680 61.111 0.00 0.00 0.00 4.18
24 25 2.509336 CATCGTGCCCCTGTCGTC 60.509 66.667 0.00 0.00 0.00 4.20
25 26 3.311110 ACATCGTGCCCCTGTCGT 61.311 61.111 0.00 0.00 0.00 4.34
26 27 2.815211 CACATCGTGCCCCTGTCG 60.815 66.667 0.00 0.00 0.00 4.35
35 36 2.733671 CTGGTCGCAGCACATCGTG 61.734 63.158 0.00 0.00 36.51 4.35
36 37 2.433145 CTGGTCGCAGCACATCGT 60.433 61.111 0.00 0.00 0.00 3.73
37 38 3.857854 GCTGGTCGCAGCACATCG 61.858 66.667 9.79 0.00 46.73 3.84
47 48 3.941188 ACTGGTGGGTGCTGGTCG 61.941 66.667 0.00 0.00 0.00 4.79
48 49 2.281761 CACTGGTGGGTGCTGGTC 60.282 66.667 0.00 0.00 0.00 4.02
61 62 3.200593 GCATCGCCTCCAGCACTG 61.201 66.667 0.00 0.00 44.04 3.66
62 63 3.040206 ATGCATCGCCTCCAGCACT 62.040 57.895 0.00 0.00 44.04 4.40
63 64 2.515523 ATGCATCGCCTCCAGCAC 60.516 61.111 0.00 0.00 44.04 4.40
64 65 2.515290 CATGCATCGCCTCCAGCA 60.515 61.111 0.00 0.00 44.04 4.41
65 66 3.285215 CCATGCATCGCCTCCAGC 61.285 66.667 0.00 0.00 38.52 4.85
66 67 2.593725 CCCATGCATCGCCTCCAG 60.594 66.667 0.00 0.00 0.00 3.86
67 68 4.881440 GCCCATGCATCGCCTCCA 62.881 66.667 0.00 0.00 37.47 3.86
68 69 4.575973 AGCCCATGCATCGCCTCC 62.576 66.667 10.91 0.00 41.13 4.30
69 70 2.517875 AAGCCCATGCATCGCCTC 60.518 61.111 10.91 0.00 41.13 4.70
70 71 2.831742 CAAGCCCATGCATCGCCT 60.832 61.111 10.91 0.00 41.13 5.52
71 72 4.580551 GCAAGCCCATGCATCGCC 62.581 66.667 10.91 0.00 45.70 5.54
102 103 4.496336 ATTGGCGAGGCAGCTCCC 62.496 66.667 5.04 0.00 37.29 4.30
104 105 2.124983 TCATTGGCGAGGCAGCTC 60.125 61.111 5.04 0.00 37.29 4.09
105 106 2.124819 CTCATTGGCGAGGCAGCT 60.125 61.111 5.04 0.00 37.29 4.24
106 107 3.207669 CCTCATTGGCGAGGCAGC 61.208 66.667 0.00 0.00 45.95 5.25
115 116 0.893270 TGGGAAACACGCCTCATTGG 60.893 55.000 0.00 0.00 39.35 3.16
116 117 0.523072 CTGGGAAACACGCCTCATTG 59.477 55.000 0.00 0.00 0.00 2.82
117 118 0.110486 ACTGGGAAACACGCCTCATT 59.890 50.000 0.00 0.00 0.00 2.57
118 119 0.606401 CACTGGGAAACACGCCTCAT 60.606 55.000 0.00 0.00 0.00 2.90
119 120 1.227823 CACTGGGAAACACGCCTCA 60.228 57.895 0.00 0.00 0.00 3.86
120 121 2.617274 GCACTGGGAAACACGCCTC 61.617 63.158 0.00 0.00 0.00 4.70
126 127 1.045407 ACTCGTAGCACTGGGAAACA 58.955 50.000 0.00 0.00 0.00 2.83
146 147 1.780919 AGAAACAAACCACCCTAGGCT 59.219 47.619 2.05 0.00 0.00 4.58
182 183 0.454196 TCTGCTACAACGCGCATCTA 59.546 50.000 5.73 0.00 35.32 1.98
248 249 2.437281 CCTACAGCCATCAGATCCTGTT 59.563 50.000 15.20 4.34 39.15 3.16
1238 1254 3.649986 ACGAAGTGGCGCACAAGC 61.650 61.111 10.83 0.00 42.51 4.01
1317 1333 4.102524 TGGAATAAGATAGTGCGATGGGTT 59.897 41.667 0.00 0.00 0.00 4.11
1399 1416 2.530177 TCGCAGATCAGCTAAACTTCG 58.470 47.619 8.57 0.00 0.00 3.79
1435 1455 6.207417 CACCTGTCCAGAAACAAATACTGAAT 59.793 38.462 0.00 0.00 34.07 2.57
1438 1458 4.821805 ACACCTGTCCAGAAACAAATACTG 59.178 41.667 0.00 0.00 0.00 2.74
1439 1459 5.048846 ACACCTGTCCAGAAACAAATACT 57.951 39.130 0.00 0.00 0.00 2.12
1440 1460 5.767816 AACACCTGTCCAGAAACAAATAC 57.232 39.130 0.00 0.00 0.00 1.89
1446 1466 2.758423 ACCAAAACACCTGTCCAGAAAC 59.242 45.455 0.00 0.00 0.00 2.78
1505 1528 0.740737 GGTCATCCCTGCAATTTCCG 59.259 55.000 0.00 0.00 0.00 4.30
1619 1642 6.500684 TTAGACCAAAATGAGAAGCATCAC 57.499 37.500 0.00 0.00 35.78 3.06
1645 1668 4.624024 CCTAAACGAAAATCACAGCGTCTA 59.376 41.667 0.00 0.00 35.74 2.59
1646 1669 3.432252 CCTAAACGAAAATCACAGCGTCT 59.568 43.478 0.00 0.00 35.74 4.18
1803 1885 3.947834 CACTTCTCTTGGGTTTGTTCAGT 59.052 43.478 0.00 0.00 0.00 3.41
1811 1893 1.611673 CCGCATCACTTCTCTTGGGTT 60.612 52.381 0.00 0.00 0.00 4.11
1830 1912 2.038975 GGCCCCCTCTTTTTCCCC 59.961 66.667 0.00 0.00 0.00 4.81
1921 2003 9.438228 TGAAACATATGTGAAGTAATTTACCGA 57.562 29.630 9.63 0.00 0.00 4.69
1984 2072 9.411189 TGTGGTAGTTTTTGGTTAAATACTCTT 57.589 29.630 0.00 0.00 38.47 2.85
2795 3820 4.899239 GCCCCTCGCCATCGTCTG 62.899 72.222 0.00 0.00 36.96 3.51
3160 4660 5.178067 CCGTGACGAAAAACTACCACTTTAT 59.822 40.000 6.54 0.00 0.00 1.40
3289 4789 4.037565 GCAGGCTTGAAATCATCATCATCA 59.962 41.667 0.00 0.00 38.03 3.07
3298 4798 4.370917 GTTTCTTTGCAGGCTTGAAATCA 58.629 39.130 0.00 0.00 0.00 2.57
3530 5036 6.185114 ACATCTTCTTCCCATTCTAGATGG 57.815 41.667 12.79 12.00 41.89 3.51
3789 5295 3.555956 CCGCGTTGATTTCAGTATTAGCT 59.444 43.478 4.92 0.00 0.00 3.32
4157 5664 2.223805 CCAAGTGCAAACCTCTTCAACC 60.224 50.000 0.00 0.00 0.00 3.77
4252 5760 7.729124 AATGAAACAAATCATTGAGAGGGAT 57.271 32.000 1.98 0.00 45.76 3.85
4727 6273 2.041922 CCTCCGGGGATCTCACCA 60.042 66.667 0.37 0.00 40.22 4.17
5028 6578 9.748708 TTTTTCAAATATTTCACTCCTCACAAG 57.251 29.630 0.00 0.00 0.00 3.16
5283 6838 0.322187 ACCATCGGTGCCCAACTAAC 60.322 55.000 0.00 0.00 32.98 2.34
5285 6840 1.277579 TAACCATCGGTGCCCAACTA 58.722 50.000 0.00 0.00 35.34 2.24
5460 7016 1.826385 AGGCACAATCACTGCTTACC 58.174 50.000 0.00 0.00 34.84 2.85
5647 7203 7.016153 ACCATTTCTTCTGGAACATAGTACA 57.984 36.000 0.00 0.00 38.20 2.90
5654 7210 9.308000 ACATAATTTACCATTTCTTCTGGAACA 57.692 29.630 0.00 0.00 37.22 3.18
5722 7278 8.116753 CGGTCATTTTTCTAGTACTAATTGCTG 58.883 37.037 3.76 0.00 0.00 4.41
6017 7578 3.131396 ACATAGCACAATAAGCGCCTAC 58.869 45.455 2.29 0.00 37.01 3.18
6419 7980 4.706842 ACCATATCCGAGGCAAACTAAT 57.293 40.909 0.00 0.00 0.00 1.73
6420 7981 4.497291 AACCATATCCGAGGCAAACTAA 57.503 40.909 0.00 0.00 0.00 2.24
6421 7982 5.617528 TTAACCATATCCGAGGCAAACTA 57.382 39.130 0.00 0.00 0.00 2.24
6422 7983 4.497291 TTAACCATATCCGAGGCAAACT 57.503 40.909 0.00 0.00 0.00 2.66
6423 7984 4.638865 AGTTTAACCATATCCGAGGCAAAC 59.361 41.667 0.00 0.00 35.22 2.93
6516 8077 1.677217 GCGAGAGAGCACAGGGAAATT 60.677 52.381 0.00 0.00 37.05 1.82
6631 8195 1.071605 GTCTCACATGGCACTTCGTC 58.928 55.000 0.00 0.00 0.00 4.20
6944 8508 8.321353 ACAGATTTATGAGGTGACACTTTATCA 58.679 33.333 5.39 5.79 0.00 2.15
7064 8628 8.159447 CCAATCTCATCAGATTTACCAGGAATA 58.841 37.037 0.00 0.00 45.68 1.75
7117 8687 7.522889 GCTTGGGAGGATCAATAGCTTTATTTC 60.523 40.741 0.00 0.00 36.25 2.17
7129 8699 1.004745 GAACTGGCTTGGGAGGATCAA 59.995 52.381 0.00 0.00 36.25 2.57
7357 8927 9.231297 GTGGATAACCTGCACAATATATAACAT 57.769 33.333 0.00 0.00 44.95 2.71
7477 9047 4.968259 AGTAATGAGGCACACTGTGTTTA 58.032 39.130 11.40 3.65 35.75 2.01
7483 9055 3.402110 TCACAAGTAATGAGGCACACTG 58.598 45.455 0.00 0.00 0.00 3.66
7484 9056 3.769739 TCACAAGTAATGAGGCACACT 57.230 42.857 0.00 0.00 0.00 3.55
7509 9081 3.317150 GCAAGCCAACACATAAGGAAAC 58.683 45.455 0.00 0.00 0.00 2.78
7574 9146 1.363744 CAGGAATGAGAACTGCGTCC 58.636 55.000 0.00 0.00 0.00 4.79
7729 9301 1.946768 ACACACTCACCCACATTTTCG 59.053 47.619 0.00 0.00 0.00 3.46
7784 9356 5.745227 CTTATCTTCTTTAGCCTTGTGGGA 58.255 41.667 0.00 0.00 37.23 4.37
7810 9382 4.697514 GAGAACATATGCTGCTAACCTCA 58.302 43.478 1.58 0.00 0.00 3.86
7977 9611 6.313411 ACAAACAAAATATTACGGCTAGCGTA 59.687 34.615 9.00 11.54 0.00 4.42
7980 9614 6.468000 GTGACAAACAAAATATTACGGCTAGC 59.532 38.462 6.04 6.04 0.00 3.42
8019 9653 7.945033 ACATCACAAACCAAATTAACACATC 57.055 32.000 0.00 0.00 0.00 3.06
8035 9669 5.434182 TTGACCTGATCCATACATCACAA 57.566 39.130 0.00 0.00 0.00 3.33
8046 9680 0.462759 CCCGCTCTTTGACCTGATCC 60.463 60.000 0.00 0.00 0.00 3.36
8047 9681 0.462759 CCCCGCTCTTTGACCTGATC 60.463 60.000 0.00 0.00 0.00 2.92
8070 9704 4.641645 TGGACTGGTTGGGCTGCG 62.642 66.667 0.00 0.00 0.00 5.18
8146 9780 1.304547 CAGTCACCTCCGAGACCCT 60.305 63.158 0.00 0.00 35.38 4.34
8147 9781 2.352032 CCAGTCACCTCCGAGACCC 61.352 68.421 0.00 0.00 35.38 4.46
8157 9791 1.202486 TCTGACGACAAACCAGTCACC 60.202 52.381 0.00 0.00 39.63 4.02
8172 9810 1.896694 CCCCAGAGAGCAGTCTGAC 59.103 63.158 15.11 0.00 46.02 3.51
8224 9862 0.249073 CTCGGACCAACGATGCCTAG 60.249 60.000 0.00 0.00 42.62 3.02
8240 9878 6.578020 TGTTACAAACAAAGTAGACACTCG 57.422 37.500 0.00 0.00 38.72 4.18
8268 9913 6.938507 TGTCAATTGTTTACCCGTATCTACT 58.061 36.000 5.13 0.00 0.00 2.57
8269 9914 7.332678 ACTTGTCAATTGTTTACCCGTATCTAC 59.667 37.037 5.13 0.00 0.00 2.59
8270 9915 7.388437 ACTTGTCAATTGTTTACCCGTATCTA 58.612 34.615 5.13 0.00 0.00 1.98
8271 9916 6.235664 ACTTGTCAATTGTTTACCCGTATCT 58.764 36.000 5.13 0.00 0.00 1.98
8272 9917 6.490566 ACTTGTCAATTGTTTACCCGTATC 57.509 37.500 5.13 0.00 0.00 2.24
8273 9918 6.487331 TCAACTTGTCAATTGTTTACCCGTAT 59.513 34.615 5.13 0.00 0.00 3.06
8274 9919 5.821470 TCAACTTGTCAATTGTTTACCCGTA 59.179 36.000 5.13 0.00 0.00 4.02
8275 9920 4.641094 TCAACTTGTCAATTGTTTACCCGT 59.359 37.500 5.13 0.00 0.00 5.28
8276 9921 4.973663 GTCAACTTGTCAATTGTTTACCCG 59.026 41.667 5.13 0.00 0.00 5.28
8277 9922 5.977129 CAGTCAACTTGTCAATTGTTTACCC 59.023 40.000 5.13 0.00 0.00 3.69
8278 9923 5.458779 GCAGTCAACTTGTCAATTGTTTACC 59.541 40.000 5.13 0.00 0.00 2.85
8279 9924 6.020678 GTGCAGTCAACTTGTCAATTGTTTAC 60.021 38.462 5.13 0.00 0.00 2.01
8280 9925 6.033341 GTGCAGTCAACTTGTCAATTGTTTA 58.967 36.000 5.13 0.00 0.00 2.01
8281 9926 4.864247 GTGCAGTCAACTTGTCAATTGTTT 59.136 37.500 5.13 0.00 0.00 2.83
8305 9950 1.673920 TGAAAGAAACTCCAACGGCAC 59.326 47.619 0.00 0.00 0.00 5.01
8405 10051 3.445805 TGATCACATAGTTAGCACACGGA 59.554 43.478 0.00 0.00 0.00 4.69
8427 10073 3.897239 TCAACAAGTTGTGAGGATTGGT 58.103 40.909 9.79 0.00 41.16 3.67
8463 10109 1.065851 GTTACGAGAGGCTCCTACTGC 59.934 57.143 11.71 0.00 0.00 4.40
8473 10119 3.119316 AGCATCAGACTTGTTACGAGAGG 60.119 47.826 6.61 0.00 0.00 3.69
8474 10120 4.103365 AGCATCAGACTTGTTACGAGAG 57.897 45.455 6.61 0.00 0.00 3.20
8475 10121 4.521130 AAGCATCAGACTTGTTACGAGA 57.479 40.909 6.61 0.00 0.00 4.04
8476 10122 5.403246 AGTAAGCATCAGACTTGTTACGAG 58.597 41.667 0.00 0.00 0.00 4.18
8477 10123 5.386958 AGTAAGCATCAGACTTGTTACGA 57.613 39.130 0.00 0.00 0.00 3.43
8478 10124 6.323266 AGTAGTAAGCATCAGACTTGTTACG 58.677 40.000 0.00 0.00 0.00 3.18
8479 10125 7.275999 GGAAGTAGTAAGCATCAGACTTGTTAC 59.724 40.741 0.00 0.00 0.00 2.50
8480 10126 7.178628 AGGAAGTAGTAAGCATCAGACTTGTTA 59.821 37.037 0.00 0.00 0.00 2.41
8481 10127 6.014156 AGGAAGTAGTAAGCATCAGACTTGTT 60.014 38.462 0.00 0.00 0.00 2.83
8482 10128 5.482175 AGGAAGTAGTAAGCATCAGACTTGT 59.518 40.000 0.00 0.00 0.00 3.16
8483 10129 5.971763 AGGAAGTAGTAAGCATCAGACTTG 58.028 41.667 0.00 0.00 0.00 3.16
8484 10130 5.955355 AGAGGAAGTAGTAAGCATCAGACTT 59.045 40.000 0.00 0.00 0.00 3.01
8485 10131 5.359576 CAGAGGAAGTAGTAAGCATCAGACT 59.640 44.000 0.00 0.00 0.00 3.24
8486 10132 5.126384 ACAGAGGAAGTAGTAAGCATCAGAC 59.874 44.000 0.00 0.00 0.00 3.51
8487 10133 5.265191 ACAGAGGAAGTAGTAAGCATCAGA 58.735 41.667 0.00 0.00 0.00 3.27
8488 10134 5.590530 ACAGAGGAAGTAGTAAGCATCAG 57.409 43.478 0.00 0.00 0.00 2.90
8489 10135 7.396339 TCTTTACAGAGGAAGTAGTAAGCATCA 59.604 37.037 0.00 0.00 0.00 3.07
8490 10136 7.773149 TCTTTACAGAGGAAGTAGTAAGCATC 58.227 38.462 0.00 0.00 0.00 3.91
8491 10137 7.719871 TCTTTACAGAGGAAGTAGTAAGCAT 57.280 36.000 0.00 0.00 0.00 3.79
8492 10138 7.534723 TTCTTTACAGAGGAAGTAGTAAGCA 57.465 36.000 0.00 0.00 0.00 3.91
8499 10145 9.939802 GGTTCTTATTTCTTTACAGAGGAAGTA 57.060 33.333 0.00 0.00 0.00 2.24
8500 10146 7.883833 GGGTTCTTATTTCTTTACAGAGGAAGT 59.116 37.037 0.00 0.00 0.00 3.01
8501 10147 8.103935 AGGGTTCTTATTTCTTTACAGAGGAAG 58.896 37.037 0.00 0.00 0.00 3.46
8502 10148 7.985589 AGGGTTCTTATTTCTTTACAGAGGAA 58.014 34.615 0.00 0.00 0.00 3.36
8503 10149 7.236847 TGAGGGTTCTTATTTCTTTACAGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
8504 10150 7.394816 TGAGGGTTCTTATTTCTTTACAGAGG 58.605 38.462 0.00 0.00 0.00 3.69
8505 10151 8.887717 CATGAGGGTTCTTATTTCTTTACAGAG 58.112 37.037 0.00 0.00 0.00 3.35
8506 10152 7.336931 GCATGAGGGTTCTTATTTCTTTACAGA 59.663 37.037 0.00 0.00 0.00 3.41
8507 10153 7.121168 TGCATGAGGGTTCTTATTTCTTTACAG 59.879 37.037 0.00 0.00 0.00 2.74
8508 10154 6.945435 TGCATGAGGGTTCTTATTTCTTTACA 59.055 34.615 0.00 0.00 0.00 2.41
8509 10155 7.391148 TGCATGAGGGTTCTTATTTCTTTAC 57.609 36.000 0.00 0.00 0.00 2.01
8510 10156 9.693739 TTATGCATGAGGGTTCTTATTTCTTTA 57.306 29.630 10.16 0.00 0.00 1.85
8511 10157 8.593945 TTATGCATGAGGGTTCTTATTTCTTT 57.406 30.769 10.16 0.00 0.00 2.52
8512 10158 8.773033 ATTATGCATGAGGGTTCTTATTTCTT 57.227 30.769 10.16 0.00 0.00 2.52
8513 10159 8.773033 AATTATGCATGAGGGTTCTTATTTCT 57.227 30.769 10.16 0.00 0.00 2.52
8516 10162 8.579863 GCTAAATTATGCATGAGGGTTCTTATT 58.420 33.333 10.16 0.00 0.00 1.40
8517 10163 7.725397 TGCTAAATTATGCATGAGGGTTCTTAT 59.275 33.333 10.16 0.00 33.94 1.73
8518 10164 7.059788 TGCTAAATTATGCATGAGGGTTCTTA 58.940 34.615 10.16 0.00 33.94 2.10
8519 10165 5.893255 TGCTAAATTATGCATGAGGGTTCTT 59.107 36.000 10.16 0.00 33.94 2.52
8520 10166 5.448654 TGCTAAATTATGCATGAGGGTTCT 58.551 37.500 10.16 0.00 33.94 3.01
8521 10167 5.772825 TGCTAAATTATGCATGAGGGTTC 57.227 39.130 10.16 0.00 33.94 3.62
8522 10168 6.736110 ATTGCTAAATTATGCATGAGGGTT 57.264 33.333 10.16 0.00 39.07 4.11
8523 10169 7.725397 TCTTATTGCTAAATTATGCATGAGGGT 59.275 33.333 10.16 0.00 39.07 4.34
8524 10170 8.025445 GTCTTATTGCTAAATTATGCATGAGGG 58.975 37.037 10.16 0.00 39.07 4.30
8561 10207 8.354711 AGCATAAGATAGATCCGTCTTATCAA 57.645 34.615 19.64 4.62 42.67 2.57
8649 10298 7.170320 CAGTTTCAGAGCTTGCAAACAATTAAT 59.830 33.333 0.00 0.00 34.61 1.40
8650 10299 6.476380 CAGTTTCAGAGCTTGCAAACAATTAA 59.524 34.615 0.00 0.00 34.61 1.40
8651 10300 5.978919 CAGTTTCAGAGCTTGCAAACAATTA 59.021 36.000 0.00 0.00 34.61 1.40
8652 10301 4.807304 CAGTTTCAGAGCTTGCAAACAATT 59.193 37.500 0.00 0.00 34.61 2.32
8653 10302 4.365723 CAGTTTCAGAGCTTGCAAACAAT 58.634 39.130 0.00 0.00 34.61 2.71
8654 10303 3.429272 CCAGTTTCAGAGCTTGCAAACAA 60.429 43.478 0.00 0.00 33.26 2.83
8655 10304 2.099592 CCAGTTTCAGAGCTTGCAAACA 59.900 45.455 0.00 0.00 33.26 2.83
8656 10305 2.099756 ACCAGTTTCAGAGCTTGCAAAC 59.900 45.455 0.00 0.00 32.10 2.93
8657 10306 2.099592 CACCAGTTTCAGAGCTTGCAAA 59.900 45.455 0.00 0.00 0.00 3.68
8658 10307 1.677576 CACCAGTTTCAGAGCTTGCAA 59.322 47.619 0.00 0.00 0.00 4.08
8659 10308 1.311859 CACCAGTTTCAGAGCTTGCA 58.688 50.000 0.00 0.00 0.00 4.08
8660 10309 0.595095 CCACCAGTTTCAGAGCTTGC 59.405 55.000 0.00 0.00 0.00 4.01
8661 10310 1.242076 CCCACCAGTTTCAGAGCTTG 58.758 55.000 0.00 0.00 0.00 4.01
8662 10311 0.111253 CCCCACCAGTTTCAGAGCTT 59.889 55.000 0.00 0.00 0.00 3.74
8663 10312 1.763770 CCCCACCAGTTTCAGAGCT 59.236 57.895 0.00 0.00 0.00 4.09
8664 10313 1.973812 GCCCCACCAGTTTCAGAGC 60.974 63.158 0.00 0.00 0.00 4.09
8665 10314 1.672356 CGCCCCACCAGTTTCAGAG 60.672 63.158 0.00 0.00 0.00 3.35
8666 10315 1.488705 ATCGCCCCACCAGTTTCAGA 61.489 55.000 0.00 0.00 0.00 3.27
8667 10316 0.609131 AATCGCCCCACCAGTTTCAG 60.609 55.000 0.00 0.00 0.00 3.02
8668 10317 0.693622 TAATCGCCCCACCAGTTTCA 59.306 50.000 0.00 0.00 0.00 2.69
8669 10318 1.471287 GTTAATCGCCCCACCAGTTTC 59.529 52.381 0.00 0.00 0.00 2.78
8670 10319 1.202952 TGTTAATCGCCCCACCAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
8671 10320 0.402504 TGTTAATCGCCCCACCAGTT 59.597 50.000 0.00 0.00 0.00 3.16
8672 10321 0.402504 TTGTTAATCGCCCCACCAGT 59.597 50.000 0.00 0.00 0.00 4.00
8673 10322 1.676006 GATTGTTAATCGCCCCACCAG 59.324 52.381 0.00 0.00 0.00 4.00
8674 10323 1.004862 TGATTGTTAATCGCCCCACCA 59.995 47.619 0.00 0.00 40.84 4.17
8675 10324 1.757682 TGATTGTTAATCGCCCCACC 58.242 50.000 0.00 0.00 40.84 4.61
8676 10325 5.705609 ATATTGATTGTTAATCGCCCCAC 57.294 39.130 0.00 0.00 40.84 4.61
8677 10326 8.415950 AAATATATTGATTGTTAATCGCCCCA 57.584 30.769 0.00 0.00 40.84 4.96
8678 10327 8.739972 AGAAATATATTGATTGTTAATCGCCCC 58.260 33.333 0.00 0.00 40.84 5.80
8679 10328 9.774742 GAGAAATATATTGATTGTTAATCGCCC 57.225 33.333 0.00 0.00 40.84 6.13
8688 10337 9.511272 TGCAGCTATGAGAAATATATTGATTGT 57.489 29.630 0.00 0.00 0.00 2.71
8692 10341 9.322773 GCTATGCAGCTATGAGAAATATATTGA 57.677 33.333 0.00 0.00 44.93 2.57
8739 10720 4.129317 ACTCTTGTAGTACTTCCCCTGT 57.871 45.455 0.00 0.00 36.36 4.00
8746 10727 8.475639 TCTGAAAACTCAACTCTTGTAGTACTT 58.524 33.333 0.00 0.00 37.50 2.24
8748 10729 8.819643 ATCTGAAAACTCAACTCTTGTAGTAC 57.180 34.615 0.00 0.00 37.50 2.73
8750 10731 9.262358 GTAATCTGAAAACTCAACTCTTGTAGT 57.738 33.333 0.00 0.00 41.49 2.73
8751 10732 9.261180 TGTAATCTGAAAACTCAACTCTTGTAG 57.739 33.333 0.00 0.00 0.00 2.74
8752 10733 9.261180 CTGTAATCTGAAAACTCAACTCTTGTA 57.739 33.333 0.00 0.00 0.00 2.41
8789 10770 3.391626 CCCCTACTTAGAATCCCTGAACC 59.608 52.174 0.00 0.00 0.00 3.62
8804 10785 4.433194 GGGCCTGGGTCCCCTACT 62.433 72.222 5.13 0.00 38.30 2.57
8821 10802 2.838467 GGATGGGGAGGCATCCTGG 61.838 68.421 18.35 0.00 45.85 4.45
8822 10803 1.432852 ATGGATGGGGAGGCATCCTG 61.433 60.000 18.35 0.00 45.64 3.86
8825 10806 1.076192 CCATGGATGGGGAGGCATC 59.924 63.158 5.56 0.00 44.31 3.91
8835 10816 8.616076 GTCTTTTAGACTGAAATACCATGGATG 58.384 37.037 21.47 2.51 41.88 3.51
8836 10817 7.775561 GGTCTTTTAGACTGAAATACCATGGAT 59.224 37.037 21.47 4.69 44.46 3.41
8838 10819 6.884295 TGGTCTTTTAGACTGAAATACCATGG 59.116 38.462 19.79 11.19 44.46 3.66
8845 10826 7.898014 AGGTTTTGGTCTTTTAGACTGAAAT 57.102 32.000 6.77 0.00 44.46 2.17
8848 10829 7.798071 TCTTAGGTTTTGGTCTTTTAGACTGA 58.202 34.615 6.77 0.00 44.46 3.41
8854 10835 7.001674 TGCTGATCTTAGGTTTTGGTCTTTTA 58.998 34.615 0.00 0.00 0.00 1.52
8866 10847 3.636679 TCTGCTACTGCTGATCTTAGGT 58.363 45.455 0.00 0.00 41.21 3.08
8868 10849 5.042593 CAGTTCTGCTACTGCTGATCTTAG 58.957 45.833 0.00 0.00 44.51 2.18
9004 10994 0.902531 ACAACGGATGTCGGGATCTT 59.097 50.000 0.00 0.00 37.96 2.40
9009 10999 0.796312 CTGAAACAACGGATGTCGGG 59.204 55.000 0.00 0.00 42.99 5.14
9010 11000 1.726791 CTCTGAAACAACGGATGTCGG 59.273 52.381 0.00 0.00 42.99 4.79
9011 11001 1.726791 CCTCTGAAACAACGGATGTCG 59.273 52.381 0.00 0.00 42.99 4.35
9013 11003 2.550208 GGTCCTCTGAAACAACGGATGT 60.550 50.000 0.00 0.00 46.82 3.06
9014 11004 2.076863 GGTCCTCTGAAACAACGGATG 58.923 52.381 0.00 0.00 0.00 3.51
9027 11089 2.658064 GCTCTGCAGCAGGTCCTCT 61.658 63.158 22.62 0.00 46.06 3.69
9051 11113 0.322975 ATATCCGGCATGAGGACAGC 59.677 55.000 11.81 0.00 41.10 4.40
9053 11115 1.423584 ACATATCCGGCATGAGGACA 58.576 50.000 19.22 2.05 41.10 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.