Multiple sequence alignment - TraesCS1A01G106900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G106900 chr1A 100.000 4699 0 0 1 4699 104577971 104582669 0.000000e+00 8678.0
1 TraesCS1A01G106900 chr1A 91.509 106 5 3 4553 4657 444771278 444771380 4.900000e-30 143.0
2 TraesCS1A01G106900 chr1A 89.720 107 7 4 4553 4659 445263964 445263862 2.950000e-27 134.0
3 TraesCS1A01G106900 chr1D 89.968 2203 143 42 1719 3879 100826315 100824149 0.000000e+00 2772.0
4 TraesCS1A01G106900 chr1D 89.846 1497 98 27 13 1460 100840026 100838535 0.000000e+00 1873.0
5 TraesCS1A01G106900 chr1D 90.942 276 18 2 4068 4336 100823858 100823583 9.610000e-97 364.0
6 TraesCS1A01G106900 chr1D 87.302 315 22 8 4354 4657 100823479 100823172 1.250000e-90 344.0
7 TraesCS1A01G106900 chr1D 91.304 92 5 2 4553 4644 345269261 345269173 6.390000e-24 122.0
8 TraesCS1A01G106900 chr1B 91.909 1891 122 13 2207 4082 150994542 150996416 0.000000e+00 2615.0
9 TraesCS1A01G106900 chr1B 92.746 579 39 3 1998 2575 150994179 150993603 0.000000e+00 833.0
10 TraesCS1A01G106900 chr1B 92.360 445 27 4 619 1060 150993166 150993606 1.110000e-175 627.0
11 TraesCS1A01G106900 chr1B 94.862 253 13 0 4084 4336 150997479 150997731 3.410000e-106 396.0
12 TraesCS1A01G106900 chr1B 85.455 385 40 8 232 604 150990594 150990974 2.050000e-103 387.0
13 TraesCS1A01G106900 chr1B 97.436 78 2 0 4343 4420 150997810 150997887 2.950000e-27 134.0
14 TraesCS1A01G106900 chr2D 79.044 1088 195 22 2419 3480 29532125 29531045 0.000000e+00 715.0
15 TraesCS1A01G106900 chr2D 83.357 697 83 11 3649 4335 587243140 587242467 8.640000e-172 614.0
16 TraesCS1A01G106900 chr2D 86.311 431 58 1 1019 1448 29533420 29532990 7.120000e-128 468.0
17 TraesCS1A01G106900 chr2D 84.787 447 66 2 1001 1446 29685086 29685531 9.280000e-122 448.0
18 TraesCS1A01G106900 chr2B 79.070 1075 185 28 2435 3480 47642960 47641897 0.000000e+00 702.0
19 TraesCS1A01G106900 chr2B 78.368 1091 195 25 2419 3480 47542746 47541668 0.000000e+00 669.0
20 TraesCS1A01G106900 chr2B 87.143 420 54 0 1001 1420 47743874 47744293 1.180000e-130 477.0
21 TraesCS1A01G106900 chr2B 86.667 420 56 0 1001 1420 47815527 47815946 2.560000e-127 466.0
22 TraesCS1A01G106900 chr2B 86.429 420 57 0 1001 1420 47684166 47684585 1.190000e-125 460.0
23 TraesCS1A01G106900 chr2B 84.978 446 64 3 1000 1444 47544036 47543593 2.580000e-122 449.0
24 TraesCS1A01G106900 chr2A 78.864 1074 187 35 2435 3480 31835141 31834080 0.000000e+00 689.0
25 TraesCS1A01G106900 chr2A 85.426 446 65 0 1001 1446 31896408 31896853 9.210000e-127 464.0
26 TraesCS1A01G106900 chr2A 83.721 172 28 0 2435 2606 31898423 31898594 3.760000e-36 163.0
27 TraesCS1A01G106900 chr4A 84.060 665 87 10 3684 4336 511133955 511134612 1.440000e-174 623.0
28 TraesCS1A01G106900 chrUn 86.429 420 57 0 1001 1420 406625122 406625541 1.190000e-125 460.0
29 TraesCS1A01G106900 chr7A 74.685 794 177 15 2670 3457 725231098 725230323 9.750000e-87 331.0
30 TraesCS1A01G106900 chr7A 83.069 189 32 0 2418 2606 725231379 725231191 6.250000e-39 172.0
31 TraesCS1A01G106900 chr7A 77.949 195 43 0 2677 2871 725310932 725310738 6.390000e-24 122.0
32 TraesCS1A01G106900 chr6D 80.590 407 65 8 3653 4049 20348237 20347835 7.640000e-78 302.0
33 TraesCS1A01G106900 chr7B 75.753 631 127 14 2418 3023 732152611 732153240 1.280000e-75 294.0
34 TraesCS1A01G106900 chr7B 75.594 631 125 15 2418 3023 732194490 732195116 7.700000e-73 285.0
35 TraesCS1A01G106900 chr7D 78.797 349 74 0 2670 3018 629329751 629329403 7.860000e-58 235.0
36 TraesCS1A01G106900 chr7D 83.069 189 32 0 2418 2606 629330032 629329844 6.250000e-39 172.0
37 TraesCS1A01G106900 chr6B 97.059 34 1 0 1679 1712 133358253 133358286 1.830000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G106900 chr1A 104577971 104582669 4698 False 8678.0 8678 100.0000 1 4699 1 chr1A.!!$F1 4698
1 TraesCS1A01G106900 chr1D 100838535 100840026 1491 True 1873.0 1873 89.8460 13 1460 1 chr1D.!!$R1 1447
2 TraesCS1A01G106900 chr1D 100823172 100826315 3143 True 1160.0 2772 89.4040 1719 4657 3 chr1D.!!$R3 2938
3 TraesCS1A01G106900 chr1B 150993603 150994179 576 True 833.0 833 92.7460 1998 2575 1 chr1B.!!$R1 577
4 TraesCS1A01G106900 chr1B 150990594 150997887 7293 False 831.8 2615 92.4044 232 4420 5 chr1B.!!$F1 4188
5 TraesCS1A01G106900 chr2D 587242467 587243140 673 True 614.0 614 83.3570 3649 4335 1 chr2D.!!$R1 686
6 TraesCS1A01G106900 chr2D 29531045 29533420 2375 True 591.5 715 82.6775 1019 3480 2 chr2D.!!$R2 2461
7 TraesCS1A01G106900 chr2B 47641897 47642960 1063 True 702.0 702 79.0700 2435 3480 1 chr2B.!!$R1 1045
8 TraesCS1A01G106900 chr2B 47541668 47544036 2368 True 559.0 669 81.6730 1000 3480 2 chr2B.!!$R2 2480
9 TraesCS1A01G106900 chr2A 31834080 31835141 1061 True 689.0 689 78.8640 2435 3480 1 chr2A.!!$R1 1045
10 TraesCS1A01G106900 chr2A 31896408 31898594 2186 False 313.5 464 84.5735 1001 2606 2 chr2A.!!$F1 1605
11 TraesCS1A01G106900 chr4A 511133955 511134612 657 False 623.0 623 84.0600 3684 4336 1 chr4A.!!$F1 652
12 TraesCS1A01G106900 chr7A 725230323 725231379 1056 True 251.5 331 78.8770 2418 3457 2 chr7A.!!$R2 1039
13 TraesCS1A01G106900 chr7B 732152611 732153240 629 False 294.0 294 75.7530 2418 3023 1 chr7B.!!$F1 605
14 TraesCS1A01G106900 chr7B 732194490 732195116 626 False 285.0 285 75.5940 2418 3023 1 chr7B.!!$F2 605
15 TraesCS1A01G106900 chr7D 629329403 629330032 629 True 203.5 235 80.9330 2418 3018 2 chr7D.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 95 1.174783 TGTGGCTAGGAACGAGTCTC 58.825 55.000 0.00 0.00 36.41 3.36 F
1537 4693 1.203758 TCAGTTCTCGGCTTATCGCAA 59.796 47.619 0.00 0.00 41.67 4.85 F
1586 4742 0.037232 GGTTCTTCACGGTAGCTGCT 60.037 55.000 7.57 7.57 0.00 4.24 F
3432 6996 0.385598 GCTTTTTCGCGGAGTTGTCC 60.386 55.000 6.13 0.00 39.88 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 4723 0.037232 AGCAGCTACCGTGAAGAACC 60.037 55.000 0.0 0.0 0.00 3.62 R
3432 6996 1.553248 TCACCAGGACCATAAACCTCG 59.447 52.381 0.0 0.0 33.91 4.63 R
3524 7088 2.095567 CCGTGCAAGAATCTGAACAAGG 60.096 50.000 0.0 0.0 0.00 3.61 R
4620 9586 0.107508 TGCATAGCAGCAGGAGAACC 60.108 55.000 0.0 0.0 40.11 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.110033 TGCGCAATAGTTCTGGTTATTAAGA 58.890 36.000 8.16 0.00 0.00 2.10
77 81 2.435437 AGTTTCCAAGCAATTTGTGGCT 59.565 40.909 0.00 0.00 43.46 4.75
90 95 1.174783 TGTGGCTAGGAACGAGTCTC 58.825 55.000 0.00 0.00 36.41 3.36
95 100 3.254892 GGCTAGGAACGAGTCTCAAAAG 58.745 50.000 0.00 0.00 31.51 2.27
101 106 2.528041 ACGAGTCTCAAAAGTGGACC 57.472 50.000 0.00 0.00 0.00 4.46
102 107 1.760613 ACGAGTCTCAAAAGTGGACCA 59.239 47.619 0.00 0.00 0.00 4.02
139 145 6.601741 TGAAAAATTGTTGAAATGTGGAGC 57.398 33.333 0.00 0.00 0.00 4.70
144 150 4.734398 TTGTTGAAATGTGGAGCAAAGT 57.266 36.364 0.00 0.00 0.00 2.66
220 226 9.816354 ATGTAGAATTTATTACCCACAAATTGC 57.184 29.630 0.00 0.00 33.26 3.56
227 233 9.651913 ATTTATTACCCACAAATTGCAAGTTAG 57.348 29.630 12.36 9.30 0.00 2.34
230 236 3.957497 ACCCACAAATTGCAAGTTAGACA 59.043 39.130 12.36 0.00 0.00 3.41
237 243 1.508632 TGCAAGTTAGACAACTCGCC 58.491 50.000 0.00 0.00 42.89 5.54
240 246 2.096218 GCAAGTTAGACAACTCGCCAAG 60.096 50.000 0.00 0.00 44.41 3.61
243 249 4.273148 AGTTAGACAACTCGCCAAGAAT 57.727 40.909 0.00 0.00 41.25 2.40
246 252 3.340814 AGACAACTCGCCAAGAATGAT 57.659 42.857 0.00 0.00 0.00 2.45
255 261 2.715046 GCCAAGAATGATGGTGTGAGA 58.285 47.619 0.00 0.00 40.23 3.27
277 283 2.550606 TGCGGAAGTGTTGTTATGTTCC 59.449 45.455 0.00 0.00 34.47 3.62
279 285 3.142951 CGGAAGTGTTGTTATGTTCCCA 58.857 45.455 0.00 0.00 34.33 4.37
314 320 7.015682 TGCACCTGGGATGAAAAGTAAATTTTA 59.984 33.333 0.00 0.00 41.24 1.52
315 321 7.545615 GCACCTGGGATGAAAAGTAAATTTTAG 59.454 37.037 0.00 0.00 41.24 1.85
376 382 5.809562 TGTTGAATGTTTTACCAACTTGCAG 59.190 36.000 0.00 0.00 39.49 4.41
442 458 8.868916 TGTCTCAAAATGCTTTAAAAAGTTGTC 58.131 29.630 4.50 0.00 38.28 3.18
502 518 1.262950 CGCGAATGTTCTTTCACCACA 59.737 47.619 0.00 0.00 0.00 4.17
551 567 9.991388 ACATTCAACAATTTTTGTCTCAATTTG 57.009 25.926 4.35 0.00 44.59 2.32
552 568 9.991388 CATTCAACAATTTTTGTCTCAATTTGT 57.009 25.926 4.35 0.00 44.59 2.83
597 632 5.878116 TCCCTATTTGTTTCGATGTTACTGG 59.122 40.000 0.00 0.00 0.00 4.00
617 696 2.124570 ACCCGGTGAGATGCATGC 60.125 61.111 11.82 11.82 0.00 4.06
630 2846 7.148340 GGTGAGATGCATGCTATTTACTTATCC 60.148 40.741 20.33 5.14 0.00 2.59
637 2853 5.043737 TGCTATTTACTTATCCGGCCTTT 57.956 39.130 0.00 0.00 0.00 3.11
652 2868 2.224566 GCCTTTTGCTTAGCCAGAGCT 61.225 52.381 0.29 0.00 44.93 4.09
730 2946 9.723601 AGAGATGAGCCTCTGATAAATTAATTC 57.276 33.333 0.10 0.00 41.63 2.17
818 3034 5.551760 ATGAGGTTTTCTGCAACTTATCG 57.448 39.130 0.00 0.00 0.00 2.92
895 3111 2.537328 GCGAGTAGTAAGACGTGCTCTC 60.537 54.545 0.00 0.00 0.00 3.20
946 3165 1.883275 CGCCTATCAAAAACCCACACA 59.117 47.619 0.00 0.00 0.00 3.72
947 3166 2.351350 CGCCTATCAAAAACCCACACAC 60.351 50.000 0.00 0.00 0.00 3.82
981 3203 1.546476 TCTCCCTTCTTCTTGCTCGTC 59.454 52.381 0.00 0.00 0.00 4.20
1014 3236 6.201064 AGAGAATCGATGGAAACAAAGCGC 62.201 45.833 0.00 0.00 43.37 5.92
1347 3569 3.780173 AGCGAGGAGAAGCTGGCC 61.780 66.667 0.00 0.00 42.82 5.36
1349 3571 3.764466 CGAGGAGAAGCTGGCCGT 61.764 66.667 0.00 0.00 0.00 5.68
1422 3644 1.675641 GCGACTCAAGGTGGCCAAT 60.676 57.895 7.24 0.00 42.57 3.16
1451 3775 3.582780 ACCACGTCGAGGTAAGATTTTC 58.417 45.455 13.02 0.00 37.67 2.29
1452 3776 3.257624 ACCACGTCGAGGTAAGATTTTCT 59.742 43.478 13.02 0.00 37.67 2.52
1474 3891 9.573133 TTTCTTTTTCTTTTCTTGAGTGATGTC 57.427 29.630 0.00 0.00 0.00 3.06
1475 3892 7.409697 TCTTTTTCTTTTCTTGAGTGATGTCG 58.590 34.615 0.00 0.00 0.00 4.35
1476 3893 6.918892 TTTTCTTTTCTTGAGTGATGTCGA 57.081 33.333 0.00 0.00 0.00 4.20
1478 3895 4.560128 TCTTTTCTTGAGTGATGTCGAGG 58.440 43.478 0.00 0.00 0.00 4.63
1481 3898 5.462530 TTTCTTGAGTGATGTCGAGGTAA 57.537 39.130 0.00 0.00 0.00 2.85
1483 3900 4.332828 TCTTGAGTGATGTCGAGGTAAGA 58.667 43.478 0.00 0.00 0.00 2.10
1484 3901 4.765339 TCTTGAGTGATGTCGAGGTAAGAA 59.235 41.667 0.00 0.00 0.00 2.52
1485 3902 5.419155 TCTTGAGTGATGTCGAGGTAAGAAT 59.581 40.000 0.00 0.00 0.00 2.40
1486 3903 5.661056 TGAGTGATGTCGAGGTAAGAATT 57.339 39.130 0.00 0.00 0.00 2.17
1487 3904 6.037786 TGAGTGATGTCGAGGTAAGAATTT 57.962 37.500 0.00 0.00 0.00 1.82
1488 3905 5.869344 TGAGTGATGTCGAGGTAAGAATTTG 59.131 40.000 0.00 0.00 0.00 2.32
1489 3906 5.178797 AGTGATGTCGAGGTAAGAATTTGG 58.821 41.667 0.00 0.00 0.00 3.28
1494 3911 5.741011 TGTCGAGGTAAGAATTTGGCTAAT 58.259 37.500 0.00 0.00 0.00 1.73
1495 3912 5.584649 TGTCGAGGTAAGAATTTGGCTAATG 59.415 40.000 0.00 0.00 0.00 1.90
1496 3913 5.585047 GTCGAGGTAAGAATTTGGCTAATGT 59.415 40.000 0.00 0.00 0.00 2.71
1497 3914 6.759827 GTCGAGGTAAGAATTTGGCTAATGTA 59.240 38.462 0.00 0.00 0.00 2.29
1498 3915 6.984474 TCGAGGTAAGAATTTGGCTAATGTAG 59.016 38.462 0.00 0.00 0.00 2.74
1499 3916 6.202954 CGAGGTAAGAATTTGGCTAATGTAGG 59.797 42.308 0.00 0.00 0.00 3.18
1502 3919 8.211629 AGGTAAGAATTTGGCTAATGTAGGTAG 58.788 37.037 0.00 0.00 0.00 3.18
1506 4662 8.268878 AGAATTTGGCTAATGTAGGTAGAGAT 57.731 34.615 0.00 0.00 0.00 2.75
1507 4663 8.371699 AGAATTTGGCTAATGTAGGTAGAGATC 58.628 37.037 0.00 0.00 0.00 2.75
1508 4664 7.863901 ATTTGGCTAATGTAGGTAGAGATCT 57.136 36.000 0.00 0.00 0.00 2.75
1533 4689 7.715265 TGAAATATTCAGTTCTCGGCTTATC 57.285 36.000 0.00 0.00 34.08 1.75
1535 4691 1.922570 TTCAGTTCTCGGCTTATCGC 58.077 50.000 0.00 0.00 38.13 4.58
1537 4693 1.203758 TCAGTTCTCGGCTTATCGCAA 59.796 47.619 0.00 0.00 41.67 4.85
1539 4695 2.029728 CAGTTCTCGGCTTATCGCAAAG 59.970 50.000 0.00 0.00 41.67 2.77
1540 4696 2.000447 GTTCTCGGCTTATCGCAAAGT 59.000 47.619 0.00 0.00 41.67 2.66
1541 4697 2.380084 TCTCGGCTTATCGCAAAGTT 57.620 45.000 0.00 0.00 41.67 2.66
1542 4698 2.268298 TCTCGGCTTATCGCAAAGTTC 58.732 47.619 0.00 0.00 41.67 3.01
1544 4700 2.268298 TCGGCTTATCGCAAAGTTCTC 58.732 47.619 0.00 0.00 41.67 2.87
1546 4702 1.327764 GGCTTATCGCAAAGTTCTCGG 59.672 52.381 0.00 0.00 41.67 4.63
1547 4703 1.267582 GCTTATCGCAAAGTTCTCGGC 60.268 52.381 0.00 0.00 38.92 5.54
1557 4713 4.980434 GCAAAGTTCTCGGCTTATACGATA 59.020 41.667 0.00 0.00 39.89 2.92
1559 4715 6.207213 CAAAGTTCTCGGCTTATACGATACT 58.793 40.000 0.00 0.00 39.89 2.12
1564 4720 8.021973 AGTTCTCGGCTTATACGATACTAATTG 58.978 37.037 0.00 0.00 39.89 2.32
1565 4721 7.444629 TCTCGGCTTATACGATACTAATTGT 57.555 36.000 0.00 0.00 39.89 2.71
1566 4722 7.879070 TCTCGGCTTATACGATACTAATTGTT 58.121 34.615 0.00 0.00 39.89 2.83
1567 4723 7.806487 TCTCGGCTTATACGATACTAATTGTTG 59.194 37.037 0.00 0.00 39.89 3.33
1568 4724 6.864685 TCGGCTTATACGATACTAATTGTTGG 59.135 38.462 0.00 0.00 35.12 3.77
1569 4725 6.643770 CGGCTTATACGATACTAATTGTTGGT 59.356 38.462 0.00 0.00 31.79 3.67
1570 4726 7.170320 CGGCTTATACGATACTAATTGTTGGTT 59.830 37.037 0.00 0.00 31.79 3.67
1571 4727 8.493547 GGCTTATACGATACTAATTGTTGGTTC 58.506 37.037 0.00 0.00 31.79 3.62
1576 4732 7.360575 ACGATACTAATTGTTGGTTCTTCAC 57.639 36.000 0.00 0.00 0.00 3.18
1577 4733 6.090358 ACGATACTAATTGTTGGTTCTTCACG 59.910 38.462 0.00 0.00 0.00 4.35
1578 4734 6.455113 CGATACTAATTGTTGGTTCTTCACGG 60.455 42.308 0.00 0.00 0.00 4.94
1579 4735 4.457466 ACTAATTGTTGGTTCTTCACGGT 58.543 39.130 0.00 0.00 0.00 4.83
1580 4736 5.613329 ACTAATTGTTGGTTCTTCACGGTA 58.387 37.500 0.00 0.00 0.00 4.02
1582 4738 1.873698 TGTTGGTTCTTCACGGTAGC 58.126 50.000 0.00 0.00 0.00 3.58
1583 4739 1.414919 TGTTGGTTCTTCACGGTAGCT 59.585 47.619 0.00 0.00 0.00 3.32
1584 4740 1.798813 GTTGGTTCTTCACGGTAGCTG 59.201 52.381 0.00 0.00 0.00 4.24
1585 4741 0.320421 TGGTTCTTCACGGTAGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
1586 4742 0.037232 GGTTCTTCACGGTAGCTGCT 60.037 55.000 7.57 7.57 0.00 4.24
1589 4745 2.124277 TCTTCACGGTAGCTGCTAGA 57.876 50.000 10.13 0.39 0.00 2.43
1590 4746 2.656002 TCTTCACGGTAGCTGCTAGAT 58.344 47.619 10.13 0.00 0.00 1.98
1591 4747 3.816994 TCTTCACGGTAGCTGCTAGATA 58.183 45.455 10.13 0.00 0.00 1.98
1593 4749 3.210232 TCACGGTAGCTGCTAGATAGT 57.790 47.619 10.13 5.16 0.00 2.12
1594 4750 3.552875 TCACGGTAGCTGCTAGATAGTT 58.447 45.455 10.13 0.00 0.00 2.24
1595 4751 3.315470 TCACGGTAGCTGCTAGATAGTTG 59.685 47.826 10.13 2.46 0.00 3.16
1596 4752 2.034812 ACGGTAGCTGCTAGATAGTTGC 59.965 50.000 10.13 0.00 0.00 4.17
1597 4753 2.034685 CGGTAGCTGCTAGATAGTTGCA 59.965 50.000 10.13 0.00 35.30 4.08
1599 4755 3.993081 GGTAGCTGCTAGATAGTTGCATG 59.007 47.826 10.13 0.00 36.07 4.06
1602 4758 3.133542 AGCTGCTAGATAGTTGCATGTCA 59.866 43.478 0.00 0.00 36.07 3.58
1603 4759 3.493877 GCTGCTAGATAGTTGCATGTCAG 59.506 47.826 0.00 0.00 36.07 3.51
1608 4764 6.481313 TGCTAGATAGTTGCATGTCAGAAATC 59.519 38.462 0.00 0.00 0.00 2.17
1611 4767 7.260558 AGATAGTTGCATGTCAGAAATCATG 57.739 36.000 0.00 0.00 42.71 3.07
1615 4771 5.711506 AGTTGCATGTCAGAAATCATGGTAA 59.288 36.000 7.15 0.00 40.91 2.85
1617 4773 6.139048 TGCATGTCAGAAATCATGGTAATG 57.861 37.500 7.15 0.00 40.91 1.90
1618 4774 5.068067 TGCATGTCAGAAATCATGGTAATGG 59.932 40.000 7.15 0.00 40.91 3.16
1623 4779 8.821686 TGTCAGAAATCATGGTAATGGTAATT 57.178 30.769 0.00 0.00 34.30 1.40
1624 4780 9.253832 TGTCAGAAATCATGGTAATGGTAATTT 57.746 29.630 0.00 0.00 34.30 1.82
1627 4783 9.533253 CAGAAATCATGGTAATGGTAATTTTCC 57.467 33.333 0.00 0.00 34.30 3.13
1632 4788 6.434652 TCATGGTAATGGTAATTTTCCGTGTT 59.565 34.615 0.00 0.00 37.15 3.32
1646 4802 9.503399 AATTTTCCGTGTTTCTAGATTTAGAGT 57.497 29.630 0.00 0.00 37.24 3.24
1693 4849 5.482908 GGAACTCAGAGTTGCTAATTCTCA 58.517 41.667 23.81 0.00 42.35 3.27
1694 4850 6.112058 GGAACTCAGAGTTGCTAATTCTCAT 58.888 40.000 23.81 0.00 42.35 2.90
1695 4851 6.257630 GGAACTCAGAGTTGCTAATTCTCATC 59.742 42.308 23.81 4.81 42.35 2.92
1697 4853 7.652524 ACTCAGAGTTGCTAATTCTCATCTA 57.347 36.000 0.00 0.00 0.00 1.98
1698 4854 7.488322 ACTCAGAGTTGCTAATTCTCATCTAC 58.512 38.462 0.00 0.00 0.00 2.59
1699 4855 7.341769 ACTCAGAGTTGCTAATTCTCATCTACT 59.658 37.037 0.00 0.00 0.00 2.57
1700 4856 8.753497 TCAGAGTTGCTAATTCTCATCTACTA 57.247 34.615 0.00 0.00 0.00 1.82
1701 4857 8.845227 TCAGAGTTGCTAATTCTCATCTACTAG 58.155 37.037 0.00 0.00 0.00 2.57
1703 4859 9.586732 AGAGTTGCTAATTCTCATCTACTAGAT 57.413 33.333 0.00 0.00 34.74 1.98
1739 4895 9.139174 CAAGGTTATTTTGTGCGATTTTAGATT 57.861 29.630 0.00 0.00 0.00 2.40
1746 4902 8.984891 TTTTGTGCGATTTTAGATTTGATGAT 57.015 26.923 0.00 0.00 0.00 2.45
1747 4903 7.974243 TTGTGCGATTTTAGATTTGATGATG 57.026 32.000 0.00 0.00 0.00 3.07
1748 4904 7.319142 TGTGCGATTTTAGATTTGATGATGA 57.681 32.000 0.00 0.00 0.00 2.92
1754 4910 8.539674 CGATTTTAGATTTGATGATGACGTACA 58.460 33.333 0.00 0.00 0.00 2.90
1758 4914 9.863845 TTTAGATTTGATGATGACGTACAACTA 57.136 29.630 0.00 0.00 0.00 2.24
1764 4920 4.547406 TGATGACGTACAACTAGATCGG 57.453 45.455 0.00 0.00 0.00 4.18
1765 4921 2.838386 TGACGTACAACTAGATCGGC 57.162 50.000 0.00 0.00 0.00 5.54
1772 4928 4.624024 CGTACAACTAGATCGGCTTGAAAA 59.376 41.667 0.00 0.00 0.00 2.29
1779 4935 5.882557 ACTAGATCGGCTTGAAAATGACAAT 59.117 36.000 0.00 0.00 0.00 2.71
1780 4936 5.240713 AGATCGGCTTGAAAATGACAATC 57.759 39.130 0.00 0.00 0.00 2.67
1789 4945 6.514870 GCTTGAAAATGACAATCTACCACACA 60.515 38.462 0.00 0.00 0.00 3.72
1792 4948 7.592938 TGAAAATGACAATCTACCACACAATC 58.407 34.615 0.00 0.00 0.00 2.67
1801 4958 9.959721 ACAATCTACCACACAATCTAAAATAGT 57.040 29.630 0.00 0.00 0.00 2.12
1806 4963 7.907214 ACCACACAATCTAAAATAGTGAGTC 57.093 36.000 0.00 0.00 34.47 3.36
1820 4977 9.665719 AAAATAGTGAGTCCAACAAAAACAAAT 57.334 25.926 0.00 0.00 0.00 2.32
1823 4980 7.404671 AGTGAGTCCAACAAAAACAAATACT 57.595 32.000 0.00 0.00 0.00 2.12
1824 4981 8.514330 AGTGAGTCCAACAAAAACAAATACTA 57.486 30.769 0.00 0.00 0.00 1.82
1883 5062 6.684686 ACATCACAGAATTCAACATTCAAGG 58.315 36.000 8.44 0.00 0.00 3.61
1893 5072 5.336150 TCAACATTCAAGGCAAACTTCAA 57.664 34.783 0.00 0.00 37.29 2.69
1894 5073 5.350633 TCAACATTCAAGGCAAACTTCAAG 58.649 37.500 0.00 0.00 37.29 3.02
1900 5079 0.865769 AGGCAAACTTCAAGCGTACG 59.134 50.000 11.84 11.84 0.00 3.67
1908 5087 3.054878 ACTTCAAGCGTACGTTTACAGG 58.945 45.455 17.15 9.73 0.00 4.00
1912 5091 2.991190 CAAGCGTACGTTTACAGGTGAT 59.009 45.455 17.15 0.00 0.00 3.06
1916 5095 3.919804 GCGTACGTTTACAGGTGATTACA 59.080 43.478 17.90 0.00 0.00 2.41
1921 5100 9.449550 CGTACGTTTACAGGTGATTACATATTA 57.550 33.333 7.22 0.00 0.00 0.98
1925 5104 9.524106 CGTTTACAGGTGATTACATATTAGACA 57.476 33.333 0.00 0.00 0.00 3.41
1968 5158 8.809159 AACTCTCTGAACATCAATCATATACG 57.191 34.615 0.00 0.00 0.00 3.06
1969 5159 7.374272 ACTCTCTGAACATCAATCATATACGG 58.626 38.462 0.00 0.00 0.00 4.02
2005 5196 9.245962 AGATTCTTGGTTTTCGAGTATAATACG 57.754 33.333 0.00 0.00 0.00 3.06
2008 5199 7.322664 TCTTGGTTTTCGAGTATAATACGGTT 58.677 34.615 0.00 0.00 0.00 4.44
2036 5227 9.931698 TTATGTGACCCACCCTAGTATATATAG 57.068 37.037 0.00 0.00 32.73 1.31
2037 5228 7.352775 TGTGACCCACCCTAGTATATATAGT 57.647 40.000 5.43 5.43 32.73 2.12
2038 5229 8.467172 TGTGACCCACCCTAGTATATATAGTA 57.533 38.462 7.03 7.03 32.73 1.82
2039 5230 8.331740 TGTGACCCACCCTAGTATATATAGTAC 58.668 40.741 3.54 0.00 32.73 2.73
2137 5445 0.967380 GCATTGGGAGGTTCAGTGGG 60.967 60.000 0.00 0.00 0.00 4.61
2232 5540 4.385310 GGACTACTCCAAAATGGGCAGTAT 60.385 45.833 0.00 0.00 38.32 2.12
2802 6357 1.180029 GCTTGATTGCCATCACACCT 58.820 50.000 0.00 0.00 39.28 4.00
2823 6378 7.032580 CACCTAAAGATCACTACAAGAGACTG 58.967 42.308 0.00 0.00 0.00 3.51
2954 6509 0.839946 ACTGGATTCAAGGGGGATCG 59.160 55.000 0.00 0.00 0.00 3.69
2988 6543 9.553064 AAGGATATGTTCACATCAGAATACTTC 57.447 33.333 0.00 0.00 37.76 3.01
3000 6555 8.105829 ACATCAGAATACTTCCAGAAGATTGTT 58.894 33.333 14.19 3.43 40.79 2.83
3030 6585 2.224606 ACATCAACAACTGTGCCTCTG 58.775 47.619 0.00 0.00 0.00 3.35
3045 6600 6.717289 TGTGCCTCTGTATAGGTTTGTTTAT 58.283 36.000 0.00 0.00 39.02 1.40
3060 6620 8.528917 GGTTTGTTTATCACATTAACCTTTCC 57.471 34.615 0.00 0.00 40.86 3.13
3106 6666 6.413818 CGAGTTTCGGATTTATAATGGTTTGC 59.586 38.462 0.00 0.00 36.00 3.68
3107 6667 7.164230 AGTTTCGGATTTATAATGGTTTGCA 57.836 32.000 0.00 0.00 0.00 4.08
3121 6685 3.192844 TGGTTTGCACGTTTCTTTGGTAA 59.807 39.130 0.00 0.00 0.00 2.85
3168 6732 2.584418 CAGCTCGCAGTCATCGGG 60.584 66.667 0.00 0.00 0.00 5.14
3294 6858 1.216990 GGGATGTCCTTGAGTGGGAT 58.783 55.000 0.00 0.00 35.15 3.85
3297 6861 3.202151 GGGATGTCCTTGAGTGGGATAAA 59.798 47.826 0.00 0.00 35.15 1.40
3423 6987 1.266989 AGGAAGAAAGGCTTTTTCGCG 59.733 47.619 14.66 0.00 36.83 5.87
3432 6996 0.385598 GCTTTTTCGCGGAGTTGTCC 60.386 55.000 6.13 0.00 39.88 4.02
3523 7087 3.009026 TCGCAGTTATGTACACGTCCTA 58.991 45.455 0.00 0.00 32.42 2.94
3524 7088 3.103738 CGCAGTTATGTACACGTCCTAC 58.896 50.000 0.00 0.00 0.00 3.18
3555 7119 1.960417 TCTTGCACGGTTCACATTCA 58.040 45.000 0.00 0.00 0.00 2.57
3568 7139 5.444122 GTTCACATTCAGTACTCACTTTGC 58.556 41.667 0.00 0.00 30.46 3.68
3574 7145 4.106029 TCAGTACTCACTTTGCGATACC 57.894 45.455 0.00 0.00 30.46 2.73
3576 7147 4.159693 TCAGTACTCACTTTGCGATACCAT 59.840 41.667 0.00 0.00 30.46 3.55
3577 7148 4.268644 CAGTACTCACTTTGCGATACCATG 59.731 45.833 0.00 0.00 30.46 3.66
3578 7149 3.334583 ACTCACTTTGCGATACCATGT 57.665 42.857 0.00 0.00 0.00 3.21
3579 7150 4.465632 ACTCACTTTGCGATACCATGTA 57.534 40.909 0.00 0.00 0.00 2.29
3580 7151 4.181578 ACTCACTTTGCGATACCATGTAC 58.818 43.478 0.00 0.00 0.00 2.90
3581 7152 4.081642 ACTCACTTTGCGATACCATGTACT 60.082 41.667 0.00 0.00 0.00 2.73
3584 7155 4.811024 CACTTTGCGATACCATGTACTCAT 59.189 41.667 0.00 0.00 34.21 2.90
3586 7157 5.880332 ACTTTGCGATACCATGTACTCATTT 59.120 36.000 0.00 0.00 31.15 2.32
3587 7158 7.011016 CACTTTGCGATACCATGTACTCATTTA 59.989 37.037 0.00 0.00 31.15 1.40
3588 7159 7.715249 ACTTTGCGATACCATGTACTCATTTAT 59.285 33.333 0.00 0.00 31.15 1.40
3591 7162 6.989759 TGCGATACCATGTACTCATTTATGTT 59.010 34.615 0.00 0.00 31.15 2.71
3592 7163 7.170828 TGCGATACCATGTACTCATTTATGTTC 59.829 37.037 0.00 0.00 31.15 3.18
3593 7164 7.360101 GCGATACCATGTACTCATTTATGTTCC 60.360 40.741 0.00 0.00 31.15 3.62
3594 7165 7.117812 CGATACCATGTACTCATTTATGTTCCC 59.882 40.741 0.00 0.00 31.15 3.97
3595 7166 6.327386 ACCATGTACTCATTTATGTTCCCT 57.673 37.500 0.00 0.00 31.15 4.20
3598 7169 8.157476 ACCATGTACTCATTTATGTTCCCTATC 58.843 37.037 0.00 0.00 31.15 2.08
3599 7170 8.378565 CCATGTACTCATTTATGTTCCCTATCT 58.621 37.037 0.00 0.00 31.15 1.98
3673 7259 4.382320 GGGTGCGCGACCTGGTAA 62.382 66.667 22.54 0.00 45.33 2.85
3676 7262 3.617735 TGCGCGACCTGGTAACCA 61.618 61.111 12.10 0.00 0.00 3.67
3685 7271 0.525761 CCTGGTAACCAACAATGCCG 59.474 55.000 0.00 0.00 30.80 5.69
3696 7282 2.601367 AATGCCGGCCTGCTTGTT 60.601 55.556 26.77 9.57 0.00 2.83
3766 7352 1.066430 GGTTCTGGCGAGAATACCACA 60.066 52.381 14.60 0.00 40.40 4.17
3767 7353 2.000447 GTTCTGGCGAGAATACCACAC 59.000 52.381 14.60 0.00 40.40 3.82
3786 7372 3.785189 AACGTGGACGACAAGCGCT 62.785 57.895 2.64 2.64 46.04 5.92
3962 7767 0.466007 TTTCTGAAGCTGCTGCCACA 60.466 50.000 12.44 11.37 40.80 4.17
4109 8975 3.181471 ACCGCTCCTTCATCAAGTCTATG 60.181 47.826 0.00 0.00 0.00 2.23
4158 9024 4.573201 GTGTACAAACTGCTTACCTTCACA 59.427 41.667 0.00 0.00 0.00 3.58
4297 9170 1.423584 ACATATCCGGCATGAGGACA 58.576 50.000 19.22 2.05 41.10 4.02
4299 9172 0.322975 ATATCCGGCATGAGGACAGC 59.677 55.000 11.81 0.00 41.10 4.40
4336 9209 2.076863 GGTCCTCTGAAACAACGGATG 58.923 52.381 0.00 0.00 0.00 3.51
4337 9210 2.550208 GGTCCTCTGAAACAACGGATGT 60.550 50.000 0.00 0.00 46.82 3.06
4338 9211 2.737252 GTCCTCTGAAACAACGGATGTC 59.263 50.000 0.00 0.00 42.99 3.06
4339 9212 1.726791 CCTCTGAAACAACGGATGTCG 59.273 52.381 0.00 0.00 42.99 4.35
4340 9213 1.726791 CTCTGAAACAACGGATGTCGG 59.273 52.381 0.00 0.00 42.99 4.79
4341 9214 0.796312 CTGAAACAACGGATGTCGGG 59.204 55.000 0.00 0.00 42.99 5.14
4346 9292 0.902531 ACAACGGATGTCGGGATCTT 59.097 50.000 0.00 0.00 37.96 2.40
4482 9448 5.042593 CAGTTCTGCTACTGCTGATCTTAG 58.957 45.833 0.00 0.00 44.51 2.18
4484 9450 3.636679 TCTGCTACTGCTGATCTTAGGT 58.363 45.455 0.00 0.00 41.21 3.08
4496 9462 7.001674 TGCTGATCTTAGGTTTTGGTCTTTTA 58.998 34.615 0.00 0.00 0.00 1.52
4502 9468 7.798071 TCTTAGGTTTTGGTCTTTTAGACTGA 58.202 34.615 6.77 0.00 44.46 3.41
4505 9471 7.898014 AGGTTTTGGTCTTTTAGACTGAAAT 57.102 32.000 6.77 0.00 44.46 2.17
4512 9478 6.884295 TGGTCTTTTAGACTGAAATACCATGG 59.116 38.462 19.79 11.19 44.46 3.66
4514 9480 7.775561 GGTCTTTTAGACTGAAATACCATGGAT 59.224 37.037 21.47 4.69 44.46 3.41
4515 9481 8.616076 GTCTTTTAGACTGAAATACCATGGATG 58.384 37.037 21.47 2.51 41.88 3.51
4525 9491 1.076192 CCATGGATGGGGAGGCATC 59.924 63.158 5.56 0.00 44.31 3.91
4528 9494 1.432852 ATGGATGGGGAGGCATCCTG 61.433 60.000 18.35 0.00 45.64 3.86
4529 9495 2.838467 GGATGGGGAGGCATCCTGG 61.838 68.421 18.35 0.00 45.85 4.45
4546 9512 4.433194 GGGCCTGGGTCCCCTACT 62.433 72.222 5.13 0.00 38.30 2.57
4561 9527 3.391626 CCCCTACTTAGAATCCCTGAACC 59.608 52.174 0.00 0.00 0.00 3.62
4598 9564 9.261180 CTGTAATCTGAAAACTCAACTCTTGTA 57.739 33.333 0.00 0.00 0.00 2.41
4599 9565 9.261180 TGTAATCTGAAAACTCAACTCTTGTAG 57.739 33.333 0.00 0.00 0.00 2.74
4602 9568 8.819643 ATCTGAAAACTCAACTCTTGTAGTAC 57.180 34.615 0.00 0.00 37.50 2.73
4603 9569 8.008513 TCTGAAAACTCAACTCTTGTAGTACT 57.991 34.615 0.00 0.00 37.50 2.73
4604 9570 8.475639 TCTGAAAACTCAACTCTTGTAGTACTT 58.524 33.333 0.00 0.00 37.50 2.24
4611 9577 4.129317 ACTCTTGTAGTACTTCCCCTGT 57.871 45.455 0.00 0.00 36.36 4.00
4658 9626 9.322773 GCTATGCAGCTATGAGAAATATATTGA 57.677 33.333 0.00 0.00 44.93 2.57
4662 9630 9.511272 TGCAGCTATGAGAAATATATTGATTGT 57.489 29.630 0.00 0.00 0.00 2.71
4671 9639 9.774742 GAGAAATATATTGATTGTTAATCGCCC 57.225 33.333 0.00 0.00 40.84 6.13
4672 9640 8.739972 AGAAATATATTGATTGTTAATCGCCCC 58.260 33.333 0.00 0.00 40.84 5.80
4673 9641 8.415950 AAATATATTGATTGTTAATCGCCCCA 57.584 30.769 0.00 0.00 40.84 4.96
4674 9642 5.705609 ATATTGATTGTTAATCGCCCCAC 57.294 39.130 0.00 0.00 40.84 4.61
4675 9643 1.757682 TGATTGTTAATCGCCCCACC 58.242 50.000 0.00 0.00 40.84 4.61
4676 9644 1.004862 TGATTGTTAATCGCCCCACCA 59.995 47.619 0.00 0.00 40.84 4.17
4677 9645 1.676006 GATTGTTAATCGCCCCACCAG 59.324 52.381 0.00 0.00 0.00 4.00
4678 9646 0.402504 TTGTTAATCGCCCCACCAGT 59.597 50.000 0.00 0.00 0.00 4.00
4679 9647 0.402504 TGTTAATCGCCCCACCAGTT 59.597 50.000 0.00 0.00 0.00 3.16
4680 9648 1.202952 TGTTAATCGCCCCACCAGTTT 60.203 47.619 0.00 0.00 0.00 2.66
4681 9649 1.471287 GTTAATCGCCCCACCAGTTTC 59.529 52.381 0.00 0.00 0.00 2.78
4682 9650 0.693622 TAATCGCCCCACCAGTTTCA 59.306 50.000 0.00 0.00 0.00 2.69
4683 9651 0.609131 AATCGCCCCACCAGTTTCAG 60.609 55.000 0.00 0.00 0.00 3.02
4684 9652 1.488705 ATCGCCCCACCAGTTTCAGA 61.489 55.000 0.00 0.00 0.00 3.27
4685 9653 1.672356 CGCCCCACCAGTTTCAGAG 60.672 63.158 0.00 0.00 0.00 3.35
4686 9654 1.973812 GCCCCACCAGTTTCAGAGC 60.974 63.158 0.00 0.00 0.00 4.09
4687 9655 1.763770 CCCCACCAGTTTCAGAGCT 59.236 57.895 0.00 0.00 0.00 4.09
4688 9656 0.111253 CCCCACCAGTTTCAGAGCTT 59.889 55.000 0.00 0.00 0.00 3.74
4689 9657 1.242076 CCCACCAGTTTCAGAGCTTG 58.758 55.000 0.00 0.00 0.00 4.01
4690 9658 0.595095 CCACCAGTTTCAGAGCTTGC 59.405 55.000 0.00 0.00 0.00 4.01
4691 9659 1.311859 CACCAGTTTCAGAGCTTGCA 58.688 50.000 0.00 0.00 0.00 4.08
4692 9660 1.677576 CACCAGTTTCAGAGCTTGCAA 59.322 47.619 0.00 0.00 0.00 4.08
4693 9661 2.099592 CACCAGTTTCAGAGCTTGCAAA 59.900 45.455 0.00 0.00 0.00 3.68
4694 9662 2.099756 ACCAGTTTCAGAGCTTGCAAAC 59.900 45.455 0.00 0.00 32.10 2.93
4695 9663 2.099592 CCAGTTTCAGAGCTTGCAAACA 59.900 45.455 0.00 0.00 33.26 2.83
4696 9664 3.429272 CCAGTTTCAGAGCTTGCAAACAA 60.429 43.478 0.00 0.00 33.26 2.83
4697 9665 4.365723 CAGTTTCAGAGCTTGCAAACAAT 58.634 39.130 0.00 0.00 34.61 2.71
4698 9666 4.807304 CAGTTTCAGAGCTTGCAAACAATT 59.193 37.500 0.00 0.00 34.61 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.401583 ACCAGAACTATTGCGCATGA 57.598 45.000 12.75 0.00 0.00 3.07
1 2 4.818534 ATAACCAGAACTATTGCGCATG 57.181 40.909 12.75 4.04 0.00 4.06
2 3 6.765989 TCTTAATAACCAGAACTATTGCGCAT 59.234 34.615 12.75 3.99 0.00 4.73
3 4 6.110033 TCTTAATAACCAGAACTATTGCGCA 58.890 36.000 5.66 5.66 0.00 6.09
65 69 1.810151 TCGTTCCTAGCCACAAATTGC 59.190 47.619 0.00 0.00 0.00 3.56
67 71 3.008049 AGACTCGTTCCTAGCCACAAATT 59.992 43.478 0.00 0.00 0.00 1.82
77 81 3.893200 TCCACTTTTGAGACTCGTTCCTA 59.107 43.478 0.00 0.00 0.00 2.94
90 95 3.947834 ACTGAGACTTTGGTCCACTTTTG 59.052 43.478 0.00 0.00 43.05 2.44
95 100 2.171341 GGACTGAGACTTTGGTCCAC 57.829 55.000 13.84 0.00 45.23 4.02
101 106 7.205297 ACAATTTTTCATGGACTGAGACTTTG 58.795 34.615 0.00 0.00 34.68 2.77
102 107 7.352079 ACAATTTTTCATGGACTGAGACTTT 57.648 32.000 0.00 0.00 34.68 2.66
203 209 8.301002 GTCTAACTTGCAATTTGTGGGTAATAA 58.699 33.333 11.94 0.00 0.00 1.40
212 218 5.510671 CGAGTTGTCTAACTTGCAATTTGT 58.489 37.500 11.94 0.00 46.79 2.83
220 226 3.390135 TCTTGGCGAGTTGTCTAACTTG 58.610 45.455 0.77 3.58 46.79 3.16
227 233 2.096496 CCATCATTCTTGGCGAGTTGTC 59.904 50.000 0.77 0.00 0.00 3.18
230 236 2.086869 CACCATCATTCTTGGCGAGTT 58.913 47.619 0.77 0.00 37.81 3.01
237 243 3.242641 CGCATCTCACACCATCATTCTTG 60.243 47.826 0.00 0.00 0.00 3.02
240 246 1.600957 CCGCATCTCACACCATCATTC 59.399 52.381 0.00 0.00 0.00 2.67
243 249 0.612744 TTCCGCATCTCACACCATCA 59.387 50.000 0.00 0.00 0.00 3.07
246 252 0.320683 CACTTCCGCATCTCACACCA 60.321 55.000 0.00 0.00 0.00 4.17
255 261 3.190535 GGAACATAACAACACTTCCGCAT 59.809 43.478 0.00 0.00 0.00 4.73
350 356 6.650807 TGCAAGTTGGTAAAACATTCAACAAA 59.349 30.769 4.75 0.00 41.14 2.83
406 422 5.673514 AGCATTTTGAGACATTGGTTTTGT 58.326 33.333 0.00 0.00 0.00 2.83
412 428 8.829612 ACTTTTTAAAGCATTTTGAGACATTGG 58.170 29.630 2.23 0.00 40.09 3.16
420 436 8.785329 AAGGACAACTTTTTAAAGCATTTTGA 57.215 26.923 2.23 0.00 36.18 2.69
442 458 4.932146 ACAAAAACGATGTTCCAAGAAGG 58.068 39.130 0.00 0.00 39.47 3.46
502 518 7.814642 TGTTTTGTCTCAACATGCAAAATTTT 58.185 26.923 9.04 0.00 41.06 1.82
561 577 9.255304 CGAAACAAATAGGGAAAAATTTGAAGA 57.745 29.630 13.14 0.00 42.90 2.87
562 578 9.255304 TCGAAACAAATAGGGAAAAATTTGAAG 57.745 29.630 13.14 3.76 42.90 3.02
563 579 9.771534 ATCGAAACAAATAGGGAAAAATTTGAA 57.228 25.926 13.14 0.00 42.90 2.69
564 580 9.202273 CATCGAAACAAATAGGGAAAAATTTGA 57.798 29.630 13.14 0.00 42.90 2.69
565 581 8.987890 ACATCGAAACAAATAGGGAAAAATTTG 58.012 29.630 6.30 6.30 44.78 2.32
566 582 9.554395 AACATCGAAACAAATAGGGAAAAATTT 57.446 25.926 0.00 0.00 0.00 1.82
568 584 9.634163 GTAACATCGAAACAAATAGGGAAAAAT 57.366 29.630 0.00 0.00 0.00 1.82
574 590 5.646360 ACCAGTAACATCGAAACAAATAGGG 59.354 40.000 0.00 0.00 0.00 3.53
597 632 1.091771 CATGCATCTCACCGGGTGAC 61.092 60.000 25.53 16.05 37.67 3.67
617 696 5.531287 AGCAAAAGGCCGGATAAGTAAATAG 59.469 40.000 5.05 0.00 46.50 1.73
630 2846 0.960364 TCTGGCTAAGCAAAAGGCCG 60.960 55.000 0.00 0.00 46.72 6.13
652 2868 0.398696 TCCAAACTTCTGGCGGCTAA 59.601 50.000 11.43 3.74 36.32 3.09
658 2874 1.341209 CCCAAAGTCCAAACTTCTGGC 59.659 52.381 11.06 0.00 45.07 4.85
759 2975 4.104579 TGCTATTTTAGGAGATGCCCATCA 59.895 41.667 10.58 0.00 40.22 3.07
864 3080 6.705381 ACGTCTTACTACTCGCTGACTAATAT 59.295 38.462 0.00 0.00 0.00 1.28
871 3087 1.129998 GCACGTCTTACTACTCGCTGA 59.870 52.381 0.00 0.00 0.00 4.26
875 3091 2.931325 AGAGAGCACGTCTTACTACTCG 59.069 50.000 0.00 0.00 34.71 4.18
895 3111 3.034635 ACTTATAGGTGGCCAGAGACAG 58.965 50.000 5.11 0.25 0.00 3.51
981 3203 3.551046 CCATCGATTCTCTTGGTCCGTAG 60.551 52.174 0.00 0.00 0.00 3.51
1240 3462 1.351012 CGTAGGCGTCGAGGTAGTG 59.649 63.158 7.01 0.00 0.00 2.74
1347 3569 3.706373 CCCCACTCCTCCCACACG 61.706 72.222 0.00 0.00 0.00 4.49
1393 3615 3.749064 GAGTCGCCACTCGCCAGA 61.749 66.667 0.00 0.00 39.91 3.86
1422 3644 3.336715 CTCGACGTGGTCATCGCCA 62.337 63.158 0.00 0.00 38.24 5.69
1451 3775 7.409697 TCGACATCACTCAAGAAAAGAAAAAG 58.590 34.615 0.00 0.00 0.00 2.27
1452 3776 7.315247 TCGACATCACTCAAGAAAAGAAAAA 57.685 32.000 0.00 0.00 0.00 1.94
1465 3882 5.292101 CCAAATTCTTACCTCGACATCACTC 59.708 44.000 0.00 0.00 0.00 3.51
1466 3883 5.178797 CCAAATTCTTACCTCGACATCACT 58.821 41.667 0.00 0.00 0.00 3.41
1467 3884 4.201822 GCCAAATTCTTACCTCGACATCAC 60.202 45.833 0.00 0.00 0.00 3.06
1474 3891 6.202954 CCTACATTAGCCAAATTCTTACCTCG 59.797 42.308 0.00 0.00 0.00 4.63
1475 3892 7.054751 ACCTACATTAGCCAAATTCTTACCTC 58.945 38.462 0.00 0.00 0.00 3.85
1476 3893 6.970191 ACCTACATTAGCCAAATTCTTACCT 58.030 36.000 0.00 0.00 0.00 3.08
1478 3895 9.262358 CTCTACCTACATTAGCCAAATTCTTAC 57.738 37.037 0.00 0.00 0.00 2.34
1481 3898 7.676683 TCTCTACCTACATTAGCCAAATTCT 57.323 36.000 0.00 0.00 0.00 2.40
1483 3900 8.268878 AGATCTCTACCTACATTAGCCAAATT 57.731 34.615 0.00 0.00 0.00 1.82
1484 3901 7.863901 AGATCTCTACCTACATTAGCCAAAT 57.136 36.000 0.00 0.00 0.00 2.32
1485 3902 7.344612 TCAAGATCTCTACCTACATTAGCCAAA 59.655 37.037 0.00 0.00 0.00 3.28
1486 3903 6.839134 TCAAGATCTCTACCTACATTAGCCAA 59.161 38.462 0.00 0.00 0.00 4.52
1487 3904 6.373759 TCAAGATCTCTACCTACATTAGCCA 58.626 40.000 0.00 0.00 0.00 4.75
1488 3905 6.902771 TCAAGATCTCTACCTACATTAGCC 57.097 41.667 0.00 0.00 0.00 3.93
1502 3919 7.307101 GCCGAGAACTGAATATTTCAAGATCTC 60.307 40.741 16.11 16.11 39.58 2.75
1506 4662 5.734720 AGCCGAGAACTGAATATTTCAAGA 58.265 37.500 0.00 0.00 39.58 3.02
1507 4663 6.428385 AAGCCGAGAACTGAATATTTCAAG 57.572 37.500 0.00 0.00 39.58 3.02
1508 4664 7.042725 CGATAAGCCGAGAACTGAATATTTCAA 60.043 37.037 0.00 0.00 39.58 2.69
1533 4689 2.034842 CGTATAAGCCGAGAACTTTGCG 60.035 50.000 0.00 0.00 0.00 4.85
1535 4691 6.207213 AGTATCGTATAAGCCGAGAACTTTG 58.793 40.000 0.00 0.00 37.81 2.77
1537 4693 7.502120 TTAGTATCGTATAAGCCGAGAACTT 57.498 36.000 0.00 0.00 37.81 2.66
1539 4695 7.806960 ACAATTAGTATCGTATAAGCCGAGAAC 59.193 37.037 0.00 0.00 37.81 3.01
1540 4696 7.879070 ACAATTAGTATCGTATAAGCCGAGAA 58.121 34.615 0.00 0.00 37.81 2.87
1541 4697 7.444629 ACAATTAGTATCGTATAAGCCGAGA 57.555 36.000 0.00 0.00 37.81 4.04
1542 4698 7.061905 CCAACAATTAGTATCGTATAAGCCGAG 59.938 40.741 0.00 0.00 37.81 4.63
1544 4700 6.643770 ACCAACAATTAGTATCGTATAAGCCG 59.356 38.462 0.00 0.00 0.00 5.52
1546 4702 9.257651 AGAACCAACAATTAGTATCGTATAAGC 57.742 33.333 0.00 0.00 0.00 3.09
1557 4713 4.457466 ACCGTGAAGAACCAACAATTAGT 58.543 39.130 0.00 0.00 0.00 2.24
1559 4715 4.453136 GCTACCGTGAAGAACCAACAATTA 59.547 41.667 0.00 0.00 0.00 1.40
1564 4720 1.798813 CAGCTACCGTGAAGAACCAAC 59.201 52.381 0.00 0.00 0.00 3.77
1565 4721 1.876416 GCAGCTACCGTGAAGAACCAA 60.876 52.381 0.00 0.00 0.00 3.67
1566 4722 0.320421 GCAGCTACCGTGAAGAACCA 60.320 55.000 0.00 0.00 0.00 3.67
1567 4723 0.037232 AGCAGCTACCGTGAAGAACC 60.037 55.000 0.00 0.00 0.00 3.62
1568 4724 2.163815 TCTAGCAGCTACCGTGAAGAAC 59.836 50.000 0.00 0.00 0.00 3.01
1569 4725 2.443416 TCTAGCAGCTACCGTGAAGAA 58.557 47.619 0.00 0.00 0.00 2.52
1570 4726 2.124277 TCTAGCAGCTACCGTGAAGA 57.876 50.000 0.00 0.00 0.00 2.87
1571 4727 3.566322 ACTATCTAGCAGCTACCGTGAAG 59.434 47.826 0.00 0.00 0.00 3.02
1573 4729 3.210232 ACTATCTAGCAGCTACCGTGA 57.790 47.619 0.00 0.00 0.00 4.35
1574 4730 3.633235 CAACTATCTAGCAGCTACCGTG 58.367 50.000 0.00 0.00 0.00 4.94
1575 4731 2.034812 GCAACTATCTAGCAGCTACCGT 59.965 50.000 0.00 0.00 0.00 4.83
1576 4732 2.034685 TGCAACTATCTAGCAGCTACCG 59.965 50.000 0.00 0.00 33.75 4.02
1577 4733 3.735237 TGCAACTATCTAGCAGCTACC 57.265 47.619 0.00 0.00 33.75 3.18
1578 4734 4.626042 ACATGCAACTATCTAGCAGCTAC 58.374 43.478 0.00 0.00 42.14 3.58
1579 4735 4.342092 TGACATGCAACTATCTAGCAGCTA 59.658 41.667 1.13 1.13 42.14 3.32
1580 4736 3.133542 TGACATGCAACTATCTAGCAGCT 59.866 43.478 0.00 0.00 42.14 4.24
1582 4738 4.941657 TCTGACATGCAACTATCTAGCAG 58.058 43.478 0.00 0.00 42.14 4.24
1583 4739 5.343307 TTCTGACATGCAACTATCTAGCA 57.657 39.130 0.00 0.00 43.14 3.49
1584 4740 6.481313 TGATTTCTGACATGCAACTATCTAGC 59.519 38.462 0.00 0.00 0.00 3.42
1585 4741 8.496751 CATGATTTCTGACATGCAACTATCTAG 58.503 37.037 0.00 0.00 37.62 2.43
1586 4742 7.443272 CCATGATTTCTGACATGCAACTATCTA 59.557 37.037 0.00 0.00 41.43 1.98
1589 4745 5.889853 ACCATGATTTCTGACATGCAACTAT 59.110 36.000 0.00 0.00 41.43 2.12
1590 4746 5.255687 ACCATGATTTCTGACATGCAACTA 58.744 37.500 0.00 0.00 41.43 2.24
1591 4747 4.084287 ACCATGATTTCTGACATGCAACT 58.916 39.130 0.00 0.00 41.43 3.16
1593 4749 6.406065 CCATTACCATGATTTCTGACATGCAA 60.406 38.462 0.00 0.00 41.43 4.08
1594 4750 5.068067 CCATTACCATGATTTCTGACATGCA 59.932 40.000 0.00 0.00 41.43 3.96
1595 4751 5.068198 ACCATTACCATGATTTCTGACATGC 59.932 40.000 0.00 0.00 41.43 4.06
1596 4752 6.704289 ACCATTACCATGATTTCTGACATG 57.296 37.500 0.00 0.00 42.12 3.21
1597 4753 9.425248 AATTACCATTACCATGATTTCTGACAT 57.575 29.630 0.00 0.00 31.07 3.06
1602 4758 8.413229 CGGAAAATTACCATTACCATGATTTCT 58.587 33.333 0.00 0.00 31.07 2.52
1603 4759 8.194769 ACGGAAAATTACCATTACCATGATTTC 58.805 33.333 0.00 0.00 31.07 2.17
1608 4764 6.202516 ACACGGAAAATTACCATTACCATG 57.797 37.500 0.00 0.00 0.00 3.66
1611 4767 6.916440 AGAAACACGGAAAATTACCATTACC 58.084 36.000 0.00 0.00 0.00 2.85
1615 4771 8.575649 AATCTAGAAACACGGAAAATTACCAT 57.424 30.769 0.00 0.00 0.00 3.55
1617 4773 9.983804 CTAAATCTAGAAACACGGAAAATTACC 57.016 33.333 0.00 0.00 0.00 2.85
1623 4779 8.770828 CAAACTCTAAATCTAGAAACACGGAAA 58.229 33.333 0.00 0.00 33.66 3.13
1624 4780 7.095355 GCAAACTCTAAATCTAGAAACACGGAA 60.095 37.037 0.00 0.00 33.66 4.30
1626 4782 6.147164 TGCAAACTCTAAATCTAGAAACACGG 59.853 38.462 0.00 0.00 33.66 4.94
1627 4783 7.010023 GTGCAAACTCTAAATCTAGAAACACG 58.990 38.462 0.00 0.00 33.66 4.49
1657 4813 9.658799 CAACTCTGAGTTCCTCTGAAATAATAA 57.341 33.333 19.65 0.00 36.03 1.40
1658 4814 7.766278 GCAACTCTGAGTTCCTCTGAAATAATA 59.234 37.037 19.65 0.00 36.03 0.98
1663 4819 3.389329 AGCAACTCTGAGTTCCTCTGAAA 59.611 43.478 19.65 0.00 36.03 2.69
1666 4822 4.527509 TTAGCAACTCTGAGTTCCTCTG 57.472 45.455 18.25 10.64 36.03 3.35
1667 4823 5.483583 AGAATTAGCAACTCTGAGTTCCTCT 59.516 40.000 18.25 17.38 36.03 3.69
1668 4824 5.729510 AGAATTAGCAACTCTGAGTTCCTC 58.270 41.667 18.25 11.82 36.03 3.71
1669 4825 5.247110 TGAGAATTAGCAACTCTGAGTTCCT 59.753 40.000 19.65 18.47 36.03 3.36
1674 4830 7.715657 AGTAGATGAGAATTAGCAACTCTGAG 58.284 38.462 2.45 2.45 0.00 3.35
1675 4831 7.652524 AGTAGATGAGAATTAGCAACTCTGA 57.347 36.000 0.00 0.00 0.00 3.27
1676 4832 8.845227 TCTAGTAGATGAGAATTAGCAACTCTG 58.155 37.037 0.00 0.00 0.00 3.35
1677 4833 8.988546 TCTAGTAGATGAGAATTAGCAACTCT 57.011 34.615 0.00 0.00 0.00 3.24
1703 4859 7.593273 CGCACAAAATAACCTTGTTATTTCTCA 59.407 33.333 19.58 0.00 34.80 3.27
1704 4860 7.806014 TCGCACAAAATAACCTTGTTATTTCTC 59.194 33.333 19.58 11.23 34.80 2.87
1706 4862 7.861176 TCGCACAAAATAACCTTGTTATTTC 57.139 32.000 19.58 10.23 34.80 2.17
1707 4863 8.825667 AATCGCACAAAATAACCTTGTTATTT 57.174 26.923 15.61 15.61 34.80 1.40
1716 4872 9.134734 TCAAATCTAAAATCGCACAAAATAACC 57.865 29.630 0.00 0.00 0.00 2.85
1739 4895 6.199393 CGATCTAGTTGTACGTCATCATCAA 58.801 40.000 0.00 0.00 0.00 2.57
1746 4902 2.362736 AGCCGATCTAGTTGTACGTCA 58.637 47.619 0.00 0.00 0.00 4.35
1747 4903 3.106672 CAAGCCGATCTAGTTGTACGTC 58.893 50.000 0.00 0.00 0.00 4.34
1748 4904 2.751259 TCAAGCCGATCTAGTTGTACGT 59.249 45.455 0.00 0.00 0.00 3.57
1754 4910 5.245531 TGTCATTTTCAAGCCGATCTAGTT 58.754 37.500 0.00 0.00 0.00 2.24
1758 4914 4.946157 AGATTGTCATTTTCAAGCCGATCT 59.054 37.500 0.00 0.00 32.56 2.75
1764 4920 5.858581 GTGTGGTAGATTGTCATTTTCAAGC 59.141 40.000 0.00 0.00 0.00 4.01
1765 4921 6.969366 TGTGTGGTAGATTGTCATTTTCAAG 58.031 36.000 0.00 0.00 0.00 3.02
1772 4928 8.862325 TTTTAGATTGTGTGGTAGATTGTCAT 57.138 30.769 0.00 0.00 0.00 3.06
1779 4935 8.812972 ACTCACTATTTTAGATTGTGTGGTAGA 58.187 33.333 5.00 0.00 0.00 2.59
1780 4936 9.088512 GACTCACTATTTTAGATTGTGTGGTAG 57.911 37.037 5.00 0.00 0.00 3.18
1792 4948 9.796120 TTGTTTTTGTTGGACTCACTATTTTAG 57.204 29.630 0.00 0.00 0.00 1.85
1801 4958 8.962679 ACTTAGTATTTGTTTTTGTTGGACTCA 58.037 29.630 0.00 0.00 0.00 3.41
1806 4963 9.691362 ATGCTACTTAGTATTTGTTTTTGTTGG 57.309 29.630 0.00 0.00 0.00 3.77
1848 5005 9.624697 TTGAATTCTGTGATGTTTAAATAGTGC 57.375 29.630 7.05 0.00 0.00 4.40
1856 5035 9.681692 CTTGAATGTTGAATTCTGTGATGTTTA 57.318 29.630 7.05 0.00 0.00 2.01
1883 5062 2.378507 AACGTACGCTTGAAGTTTGC 57.621 45.000 16.72 0.00 0.00 3.68
1893 5072 3.308438 AATCACCTGTAAACGTACGCT 57.692 42.857 16.72 0.00 32.40 5.07
1894 5073 3.919804 TGTAATCACCTGTAAACGTACGC 59.080 43.478 16.72 0.00 32.40 4.42
1982 5172 7.322664 ACCGTATTATACTCGAAAACCAAGAA 58.677 34.615 0.69 0.00 0.00 2.52
1993 5183 9.282247 GGTCACATAATAACCGTATTATACTCG 57.718 37.037 0.69 0.00 39.76 4.18
1994 5184 9.578439 GGGTCACATAATAACCGTATTATACTC 57.422 37.037 0.69 0.00 39.76 2.59
1995 5185 9.092338 TGGGTCACATAATAACCGTATTATACT 57.908 33.333 0.69 0.00 39.76 2.12
1996 5186 9.143631 GTGGGTCACATAATAACCGTATTATAC 57.856 37.037 0.00 0.00 39.76 1.47
2005 5196 3.945640 AGGGTGGGTCACATAATAACC 57.054 47.619 0.38 0.00 35.86 2.85
2045 5236 9.628500 AAGGGAACAGTGTAAATCTAATAATCC 57.372 33.333 0.00 0.00 0.00 3.01
2073 5264 8.441608 CAATGTGTGTCTAGAGAAGAGAAAATG 58.558 37.037 0.00 0.00 33.88 2.32
2232 5540 3.722147 GCGATCATCTCCTTAGCTTTCA 58.278 45.455 0.00 0.00 0.00 2.69
2802 6357 6.378564 CCTCCAGTCTCTTGTAGTGATCTTTA 59.621 42.308 0.00 0.00 0.00 1.85
2823 6378 5.552870 TCAGAATAATGCTACCTTCCTCC 57.447 43.478 0.00 0.00 0.00 4.30
2954 6509 6.994496 TGATGTGAACATATCCTTGATCTTCC 59.006 38.462 8.58 0.00 36.57 3.46
2988 6543 3.221771 TGACCCAACAACAATCTTCTGG 58.778 45.455 0.00 0.00 0.00 3.86
3015 6570 3.583086 ACCTATACAGAGGCACAGTTGTT 59.417 43.478 0.00 0.00 40.65 2.83
3089 6649 7.033185 AGAAACGTGCAAACCATTATAAATCC 58.967 34.615 0.00 0.00 0.00 3.01
3106 6666 6.563222 TTCCCTAATTACCAAAGAAACGTG 57.437 37.500 0.00 0.00 0.00 4.49
3107 6667 6.349860 GCATTCCCTAATTACCAAAGAAACGT 60.350 38.462 0.00 0.00 0.00 3.99
3121 6685 5.553162 TCTTAGGATGGATGCATTCCCTAAT 59.447 40.000 20.67 0.00 44.77 1.73
3168 6732 5.293079 CAGGTTTGCTAAGCTCTCTGAATAC 59.707 44.000 9.67 0.00 39.98 1.89
3294 6858 5.753438 ACGAGAATAGCGCTTCATGAATTTA 59.247 36.000 18.68 0.00 0.00 1.40
3297 6861 3.492383 CACGAGAATAGCGCTTCATGAAT 59.508 43.478 18.68 0.00 0.00 2.57
3345 6909 6.594937 GGTCGTTGTACCAAATGTTAAGGATA 59.405 38.462 0.00 0.00 39.50 2.59
3423 6987 2.027469 ACCATAAACCTCGGACAACTCC 60.027 50.000 0.00 0.00 0.00 3.85
3432 6996 1.553248 TCACCAGGACCATAAACCTCG 59.447 52.381 0.00 0.00 33.91 4.63
3523 7087 2.549754 CGTGCAAGAATCTGAACAAGGT 59.450 45.455 0.00 0.00 0.00 3.50
3524 7088 2.095567 CCGTGCAAGAATCTGAACAAGG 60.096 50.000 0.00 0.00 0.00 3.61
3555 7119 4.081642 ACATGGTATCGCAAAGTGAGTACT 60.082 41.667 0.00 0.00 39.32 2.73
3568 7139 7.117812 GGGAACATAAATGAGTACATGGTATCG 59.882 40.741 0.00 0.00 36.79 2.92
3638 7224 2.986728 ACCCCAAGACCAGTAGTGATTT 59.013 45.455 0.00 0.00 0.00 2.17
3671 7257 1.075836 AGGCCGGCATTGTTGGTTA 59.924 52.632 30.85 0.00 0.00 2.85
3673 7259 2.990967 CAGGCCGGCATTGTTGGT 60.991 61.111 30.85 0.00 0.00 3.67
3676 7262 2.601367 AAGCAGGCCGGCATTGTT 60.601 55.556 29.90 20.58 35.83 2.83
3685 7271 3.818773 TGTAGAAGTTTAACAAGCAGGCC 59.181 43.478 0.00 0.00 0.00 5.19
3696 7282 6.624423 GCTGGTGTAGTCGATGTAGAAGTTTA 60.624 42.308 0.00 0.00 0.00 2.01
3766 7352 2.235016 CGCTTGTCGTCCACGTTGT 61.235 57.895 0.00 0.00 40.80 3.32
3767 7353 2.544359 CGCTTGTCGTCCACGTTG 59.456 61.111 0.00 0.00 40.80 4.10
3911 7701 2.358737 GTCTGTTGAGTGGGCCGG 60.359 66.667 0.00 0.00 0.00 6.13
3918 7713 3.199946 TGGGAGAAAAGTGTCTGTTGAGT 59.800 43.478 0.00 0.00 0.00 3.41
3962 7767 2.667536 CGGCACACAGAAGCAGCT 60.668 61.111 0.00 0.00 0.00 4.24
3991 7796 2.045536 GAGGAGCAAGGTGGCCAG 60.046 66.667 5.11 0.00 0.00 4.85
4109 8975 1.671328 GAGGAAATAGCTTTGCCGTCC 59.329 52.381 0.00 0.00 33.51 4.79
4158 9024 2.273179 TACAGGACAACGCTCGCCT 61.273 57.895 0.00 0.00 0.00 5.52
4312 9185 1.541233 CGTTGTTTCAGAGGACCTGCT 60.541 52.381 0.00 0.00 42.62 4.24
4336 9209 1.823976 GGACCTCCAAGATCCCGAC 59.176 63.158 0.00 0.00 35.64 4.79
4337 9210 1.756950 CGGACCTCCAAGATCCCGA 60.757 63.158 0.00 0.00 39.31 5.14
4338 9211 2.797278 CCGGACCTCCAAGATCCCG 61.797 68.421 0.00 0.00 36.98 5.14
4339 9212 3.108288 GCCGGACCTCCAAGATCCC 62.108 68.421 5.05 0.00 35.14 3.85
4340 9213 2.506472 GCCGGACCTCCAAGATCC 59.494 66.667 5.05 0.00 35.14 3.36
4341 9214 2.506472 GGCCGGACCTCCAAGATC 59.494 66.667 5.05 0.00 35.14 2.75
4460 9417 4.099266 CCTAAGATCAGCAGTAGCAGAACT 59.901 45.833 0.00 0.00 45.49 3.01
4474 9440 8.437575 AGTCTAAAAGACCAAAACCTAAGATCA 58.562 33.333 3.49 0.00 46.18 2.92
4482 9448 8.080417 GGTATTTCAGTCTAAAAGACCAAAACC 58.920 37.037 7.32 9.16 46.18 3.27
4496 9462 3.139025 CCCCATCCATGGTATTTCAGTCT 59.861 47.826 12.58 0.00 46.65 3.24
4502 9468 1.147817 GCCTCCCCATCCATGGTATTT 59.852 52.381 12.58 0.00 46.65 1.40
4505 9471 0.403304 ATGCCTCCCCATCCATGGTA 60.403 55.000 12.58 0.00 46.65 3.25
4512 9478 2.838467 CCCAGGATGCCTCCCCATC 61.838 68.421 4.15 0.00 43.21 3.51
4540 9506 4.101741 CAGGTTCAGGGATTCTAAGTAGGG 59.898 50.000 0.00 0.00 0.00 3.53
4546 9512 5.745227 GAATCACAGGTTCAGGGATTCTAA 58.255 41.667 10.11 0.00 40.24 2.10
4561 9527 8.997323 AGTTTTCAGATTACAGAAGAATCACAG 58.003 33.333 0.00 0.00 36.03 3.66
4598 9564 1.535687 ACGGCACAGGGGAAGTACT 60.536 57.895 0.00 0.00 0.00 2.73
4599 9565 1.375523 CACGGCACAGGGGAAGTAC 60.376 63.158 0.00 0.00 0.00 2.73
4601 9567 3.953775 CCACGGCACAGGGGAAGT 61.954 66.667 0.00 0.00 36.61 3.01
4602 9568 4.722700 CCCACGGCACAGGGGAAG 62.723 72.222 0.00 0.00 45.08 3.46
4611 9577 4.974438 AGGAGAACCCCCACGGCA 62.974 66.667 0.00 0.00 36.73 5.69
4620 9586 0.107508 TGCATAGCAGCAGGAGAACC 60.108 55.000 0.00 0.00 40.11 3.62
4621 9587 3.465990 TGCATAGCAGCAGGAGAAC 57.534 52.632 0.00 0.00 40.11 3.01
4657 9625 1.676006 CTGGTGGGGCGATTAACAATC 59.324 52.381 0.00 0.00 34.52 2.67
4658 9626 1.005450 ACTGGTGGGGCGATTAACAAT 59.995 47.619 0.00 0.00 0.00 2.71
4659 9627 0.402504 ACTGGTGGGGCGATTAACAA 59.597 50.000 0.00 0.00 0.00 2.83
4660 9628 0.402504 AACTGGTGGGGCGATTAACA 59.597 50.000 0.00 0.00 0.00 2.41
4661 9629 1.471287 GAAACTGGTGGGGCGATTAAC 59.529 52.381 0.00 0.00 0.00 2.01
4662 9630 1.074084 TGAAACTGGTGGGGCGATTAA 59.926 47.619 0.00 0.00 0.00 1.40
4663 9631 0.693622 TGAAACTGGTGGGGCGATTA 59.306 50.000 0.00 0.00 0.00 1.75
4664 9632 0.609131 CTGAAACTGGTGGGGCGATT 60.609 55.000 0.00 0.00 0.00 3.34
4665 9633 1.002134 CTGAAACTGGTGGGGCGAT 60.002 57.895 0.00 0.00 0.00 4.58
4666 9634 2.111999 CTCTGAAACTGGTGGGGCGA 62.112 60.000 0.00 0.00 0.00 5.54
4667 9635 1.672356 CTCTGAAACTGGTGGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
4668 9636 1.973812 GCTCTGAAACTGGTGGGGC 60.974 63.158 0.00 0.00 0.00 5.80
4669 9637 0.111253 AAGCTCTGAAACTGGTGGGG 59.889 55.000 0.00 0.00 0.00 4.96
4670 9638 1.242076 CAAGCTCTGAAACTGGTGGG 58.758 55.000 0.00 0.00 0.00 4.61
4671 9639 0.595095 GCAAGCTCTGAAACTGGTGG 59.405 55.000 0.00 0.00 0.00 4.61
4672 9640 1.311859 TGCAAGCTCTGAAACTGGTG 58.688 50.000 0.00 0.00 0.00 4.17
4673 9641 2.057137 TTGCAAGCTCTGAAACTGGT 57.943 45.000 0.00 0.00 0.00 4.00
4674 9642 2.099592 TGTTTGCAAGCTCTGAAACTGG 59.900 45.455 14.67 0.00 31.63 4.00
4675 9643 3.425577 TGTTTGCAAGCTCTGAAACTG 57.574 42.857 14.67 0.00 31.63 3.16
4676 9644 4.660789 ATTGTTTGCAAGCTCTGAAACT 57.339 36.364 14.67 0.00 38.10 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.