Multiple sequence alignment - TraesCS1A01G106700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G106700 chr1A 100.000 2564 0 0 1 2564 104434352 104431789 0.000000e+00 4735.0
1 TraesCS1A01G106700 chr1A 97.094 413 10 2 338 748 512457032 512456620 0.000000e+00 695.0
2 TraesCS1A01G106700 chr1A 95.874 412 14 2 339 748 262931015 262930605 0.000000e+00 664.0
3 TraesCS1A01G106700 chr1A 95.631 412 16 2 338 748 326339611 326339201 0.000000e+00 660.0
4 TraesCS1A01G106700 chr1D 90.585 1179 67 18 749 1901 100903263 100904423 0.000000e+00 1522.0
5 TraesCS1A01G106700 chr1D 86.364 484 35 19 1898 2367 100908064 100908530 1.370000e-137 499.0
6 TraesCS1A01G106700 chr1D 90.029 341 24 4 3 338 100902937 100903272 1.410000e-117 433.0
7 TraesCS1A01G106700 chr1D 90.686 204 11 6 2362 2564 100908567 100908763 5.440000e-67 265.0
8 TraesCS1A01G106700 chr1B 91.679 697 39 12 749 1445 150777856 150777179 0.000000e+00 948.0
9 TraesCS1A01G106700 chr1B 87.456 574 51 15 1807 2367 150776050 150775485 2.150000e-180 641.0
10 TraesCS1A01G106700 chr1B 93.805 339 16 2 1 338 150778181 150777847 2.940000e-139 505.0
11 TraesCS1A01G106700 chr1B 89.367 395 14 10 1437 1805 150776983 150776591 2.990000e-129 472.0
12 TraesCS1A01G106700 chr1B 92.683 205 7 6 2362 2564 150775449 150775251 3.230000e-74 289.0
13 TraesCS1A01G106700 chr1B 95.918 98 4 0 3 100 150780038 150779941 2.640000e-35 159.0
14 TraesCS1A01G106700 chr1B 88.462 52 6 0 2372 2423 135242697 135242748 2.130000e-06 63.9
15 TraesCS1A01G106700 chr7A 97.073 410 11 1 339 748 191172833 191173241 0.000000e+00 689.0
16 TraesCS1A01G106700 chr7A 96.117 412 16 0 338 749 617553451 617553040 0.000000e+00 673.0
17 TraesCS1A01G106700 chr7A 87.931 58 6 1 2362 2419 493376949 493377005 1.650000e-07 67.6
18 TraesCS1A01G106700 chr6A 96.117 412 15 1 338 748 454388038 454388449 0.000000e+00 671.0
19 TraesCS1A01G106700 chr6A 100.000 28 0 0 115 142 52930190 52930163 5.000000e-03 52.8
20 TraesCS1A01G106700 chr2A 95.864 411 14 2 341 748 742129694 742130104 0.000000e+00 662.0
21 TraesCS1A01G106700 chr5A 95.227 419 17 2 333 748 688144662 688145080 0.000000e+00 660.0
22 TraesCS1A01G106700 chr5A 93.706 429 26 1 338 765 609808059 609807631 2.150000e-180 641.0
23 TraesCS1A01G106700 chr5A 89.091 55 1 4 2357 2411 51742844 51742795 2.130000e-06 63.9
24 TraesCS1A01G106700 chr5B 81.529 157 21 7 2190 2344 56913964 56913814 3.460000e-24 122.0
25 TraesCS1A01G106700 chr5B 88.235 68 7 1 2249 2316 489535279 489535213 2.110000e-11 80.5
26 TraesCS1A01G106700 chr5B 88.235 68 7 1 2249 2316 489537795 489537729 2.110000e-11 80.5
27 TraesCS1A01G106700 chr5B 88.235 68 7 1 2249 2316 489541283 489541217 2.110000e-11 80.5
28 TraesCS1A01G106700 chr4A 88.462 52 5 1 2372 2423 140766400 140766450 7.660000e-06 62.1
29 TraesCS1A01G106700 chr4A 88.462 52 5 1 2372 2423 140769684 140769734 7.660000e-06 62.1
30 TraesCS1A01G106700 chr4A 92.500 40 2 1 2372 2411 140767873 140767911 3.560000e-04 56.5
31 TraesCS1A01G106700 chr2D 85.484 62 4 5 2362 2421 59656450 59656508 2.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G106700 chr1A 104431789 104434352 2563 True 4735.000000 4735 100.000 1 2564 1 chr1A.!!$R1 2563
1 TraesCS1A01G106700 chr1D 100902937 100908763 5826 False 679.750000 1522 89.416 3 2564 4 chr1D.!!$F1 2561
2 TraesCS1A01G106700 chr1B 150775251 150780038 4787 True 502.333333 948 91.818 1 2564 6 chr1B.!!$R1 2563

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.108585 TCCCTTGTGACTTGTGAGGC 59.891 55.0 0.00 0.0 0.00 4.70 F
720 2588 0.250989 TTGGTAAAACGGGCTCCCTG 60.251 55.0 3.11 0.0 35.68 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1235 3103 1.153369 TGGAGCAGTTGATAGGCGC 60.153 57.895 0.0 0.0 0.0 6.53 R
1993 8276 1.883275 CAGCCCAAAACAATACACGGA 59.117 47.619 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 5.125097 ACAACTTCAATTCATGATCCAGCTC 59.875 40.000 0.00 0.00 38.03 4.09
71 72 0.108585 TCCCTTGTGACTTGTGAGGC 59.891 55.000 0.00 0.00 0.00 4.70
100 1961 1.742268 GGAAGCTCTCACATTTCTGCC 59.258 52.381 0.00 0.00 0.00 4.85
122 1983 1.672356 CTGCCACTTTCACCCCTCG 60.672 63.158 0.00 0.00 0.00 4.63
151 2012 4.725169 GCATAAAGCGCGCTATAGGATTTC 60.725 45.833 36.73 13.32 0.00 2.17
185 2046 2.432206 AATTGGTGTTGCTTAACCGC 57.568 45.000 0.00 0.00 39.47 5.68
194 2055 2.373540 TGCTTAACCGCGAAGTATGT 57.626 45.000 8.23 0.00 0.00 2.29
267 2131 5.491635 GCTTTAGCTTTGGATTGGAGTAG 57.508 43.478 0.00 0.00 38.21 2.57
268 2132 4.336713 GCTTTAGCTTTGGATTGGAGTAGG 59.663 45.833 0.00 0.00 38.21 3.18
269 2133 4.503714 TTAGCTTTGGATTGGAGTAGGG 57.496 45.455 0.00 0.00 0.00 3.53
328 2196 4.179579 GCTGATCAAACGCCGGGC 62.180 66.667 9.54 9.54 0.00 6.13
348 2216 3.351450 GGTGACCCGAAAAGTGGC 58.649 61.111 0.00 0.00 0.00 5.01
349 2217 1.228154 GGTGACCCGAAAAGTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
350 2218 1.515521 GGTGACCCGAAAAGTGGCTG 61.516 60.000 0.00 0.00 0.00 4.85
351 2219 1.896660 TGACCCGAAAAGTGGCTGC 60.897 57.895 0.00 0.00 0.00 5.25
352 2220 1.896660 GACCCGAAAAGTGGCTGCA 60.897 57.895 0.50 0.00 0.00 4.41
353 2221 1.856265 GACCCGAAAAGTGGCTGCAG 61.856 60.000 10.11 10.11 0.00 4.41
354 2222 1.600636 CCCGAAAAGTGGCTGCAGA 60.601 57.895 20.43 0.00 0.00 4.26
355 2223 1.580845 CCCGAAAAGTGGCTGCAGAG 61.581 60.000 20.43 0.00 0.00 3.35
356 2224 1.580845 CCGAAAAGTGGCTGCAGAGG 61.581 60.000 20.43 1.77 0.00 3.69
357 2225 1.583477 GAAAAGTGGCTGCAGAGGC 59.417 57.895 20.43 5.00 45.19 4.70
358 2226 0.892814 GAAAAGTGGCTGCAGAGGCT 60.893 55.000 20.43 8.25 45.20 4.58
359 2227 1.177256 AAAAGTGGCTGCAGAGGCTG 61.177 55.000 20.43 0.00 45.20 4.85
360 2228 2.060567 AAAGTGGCTGCAGAGGCTGA 62.061 55.000 20.43 0.00 45.20 4.26
361 2229 2.436292 GTGGCTGCAGAGGCTGAG 60.436 66.667 20.43 0.00 45.20 3.35
362 2230 4.405671 TGGCTGCAGAGGCTGAGC 62.406 66.667 20.43 0.00 45.20 4.26
363 2231 4.098722 GGCTGCAGAGGCTGAGCT 62.099 66.667 20.43 0.00 41.64 4.09
364 2232 2.512057 GCTGCAGAGGCTGAGCTC 60.512 66.667 20.43 6.82 41.06 4.09
365 2233 2.187424 CTGCAGAGGCTGAGCTCC 59.813 66.667 8.42 0.00 41.06 4.70
366 2234 2.605601 TGCAGAGGCTGAGCTCCA 60.606 61.111 12.15 0.00 41.91 3.86
367 2235 2.125188 GCAGAGGCTGAGCTCCAC 60.125 66.667 12.15 2.54 36.96 4.02
368 2236 2.658064 GCAGAGGCTGAGCTCCACT 61.658 63.158 12.15 6.44 36.96 4.00
369 2237 1.218585 CAGAGGCTGAGCTCCACTG 59.781 63.158 12.15 7.12 36.31 3.66
370 2238 1.078166 AGAGGCTGAGCTCCACTGA 59.922 57.895 12.15 0.00 0.00 3.41
371 2239 0.971959 AGAGGCTGAGCTCCACTGAG 60.972 60.000 12.15 2.09 41.84 3.35
387 2255 8.121305 CTCCACTGAGCTCTATATACATTTCT 57.879 38.462 16.19 0.00 0.00 2.52
388 2256 8.116651 TCCACTGAGCTCTATATACATTTCTC 57.883 38.462 16.19 0.00 0.00 2.87
389 2257 7.725844 TCCACTGAGCTCTATATACATTTCTCA 59.274 37.037 16.19 0.00 0.00 3.27
390 2258 8.028354 CCACTGAGCTCTATATACATTTCTCAG 58.972 40.741 16.19 12.65 46.85 3.35
391 2259 7.541783 CACTGAGCTCTATATACATTTCTCAGC 59.458 40.741 16.19 0.00 45.96 4.26
392 2260 6.929625 TGAGCTCTATATACATTTCTCAGCC 58.070 40.000 16.19 0.00 0.00 4.85
393 2261 6.494835 TGAGCTCTATATACATTTCTCAGCCA 59.505 38.462 16.19 0.00 0.00 4.75
394 2262 7.015584 TGAGCTCTATATACATTTCTCAGCCAA 59.984 37.037 16.19 0.00 0.00 4.52
395 2263 7.739825 AGCTCTATATACATTTCTCAGCCAAA 58.260 34.615 0.00 0.00 0.00 3.28
396 2264 8.213679 AGCTCTATATACATTTCTCAGCCAAAA 58.786 33.333 0.00 0.00 0.00 2.44
397 2265 9.007901 GCTCTATATACATTTCTCAGCCAAAAT 57.992 33.333 0.00 0.00 0.00 1.82
402 2270 7.961326 ATACATTTCTCAGCCAAAATACCTT 57.039 32.000 0.00 0.00 0.00 3.50
403 2271 6.670695 ACATTTCTCAGCCAAAATACCTTT 57.329 33.333 0.00 0.00 0.00 3.11
404 2272 7.066307 ACATTTCTCAGCCAAAATACCTTTT 57.934 32.000 0.00 0.00 34.90 2.27
405 2273 7.508687 ACATTTCTCAGCCAAAATACCTTTTT 58.491 30.769 0.00 0.00 32.21 1.94
406 2274 7.657354 ACATTTCTCAGCCAAAATACCTTTTTC 59.343 33.333 0.00 0.00 32.21 2.29
407 2275 6.723298 TTCTCAGCCAAAATACCTTTTTCA 57.277 33.333 0.00 0.00 32.21 2.69
408 2276 6.916360 TCTCAGCCAAAATACCTTTTTCAT 57.084 33.333 0.00 0.00 32.21 2.57
409 2277 8.415950 TTCTCAGCCAAAATACCTTTTTCATA 57.584 30.769 0.00 0.00 32.21 2.15
410 2278 8.415950 TCTCAGCCAAAATACCTTTTTCATAA 57.584 30.769 0.00 0.00 32.21 1.90
411 2279 8.303876 TCTCAGCCAAAATACCTTTTTCATAAC 58.696 33.333 0.00 0.00 32.21 1.89
412 2280 8.189119 TCAGCCAAAATACCTTTTTCATAACT 57.811 30.769 0.00 0.00 32.21 2.24
413 2281 8.303876 TCAGCCAAAATACCTTTTTCATAACTC 58.696 33.333 0.00 0.00 32.21 3.01
414 2282 8.087750 CAGCCAAAATACCTTTTTCATAACTCA 58.912 33.333 0.00 0.00 32.21 3.41
415 2283 8.646900 AGCCAAAATACCTTTTTCATAACTCAA 58.353 29.630 0.00 0.00 32.21 3.02
416 2284 9.267084 GCCAAAATACCTTTTTCATAACTCAAA 57.733 29.630 0.00 0.00 32.21 2.69
538 2406 8.986477 AAACAAATACACAGATTGAAATAGGC 57.014 30.769 0.00 0.00 0.00 3.93
539 2407 7.944729 ACAAATACACAGATTGAAATAGGCT 57.055 32.000 0.00 0.00 0.00 4.58
540 2408 8.353423 ACAAATACACAGATTGAAATAGGCTT 57.647 30.769 0.00 0.00 0.00 4.35
541 2409 8.806146 ACAAATACACAGATTGAAATAGGCTTT 58.194 29.630 0.00 0.00 0.00 3.51
542 2410 9.643693 CAAATACACAGATTGAAATAGGCTTTT 57.356 29.630 0.00 0.00 0.00 2.27
544 2412 9.860898 AATACACAGATTGAAATAGGCTTTTTC 57.139 29.630 19.53 19.53 34.40 2.29
545 2413 7.530426 ACACAGATTGAAATAGGCTTTTTCT 57.470 32.000 24.32 10.70 34.80 2.52
546 2414 7.955918 ACACAGATTGAAATAGGCTTTTTCTT 58.044 30.769 24.32 15.28 34.80 2.52
547 2415 8.424133 ACACAGATTGAAATAGGCTTTTTCTTT 58.576 29.630 24.32 15.00 34.80 2.52
548 2416 8.706035 CACAGATTGAAATAGGCTTTTTCTTTG 58.294 33.333 24.32 19.03 34.80 2.77
549 2417 8.424133 ACAGATTGAAATAGGCTTTTTCTTTGT 58.576 29.630 24.32 19.47 34.80 2.83
550 2418 9.264719 CAGATTGAAATAGGCTTTTTCTTTGTT 57.735 29.630 24.32 9.89 34.80 2.83
551 2419 9.264719 AGATTGAAATAGGCTTTTTCTTTGTTG 57.735 29.630 24.32 0.00 34.80 3.33
552 2420 8.962884 ATTGAAATAGGCTTTTTCTTTGTTGT 57.037 26.923 24.32 6.50 34.80 3.32
558 2426 9.830975 AATAGGCTTTTTCTTTGTTGTATTTGT 57.169 25.926 0.00 0.00 0.00 2.83
559 2427 7.538303 AGGCTTTTTCTTTGTTGTATTTGTG 57.462 32.000 0.00 0.00 0.00 3.33
560 2428 7.102993 AGGCTTTTTCTTTGTTGTATTTGTGT 58.897 30.769 0.00 0.00 0.00 3.72
561 2429 7.277760 AGGCTTTTTCTTTGTTGTATTTGTGTC 59.722 33.333 0.00 0.00 0.00 3.67
562 2430 7.064016 GGCTTTTTCTTTGTTGTATTTGTGTCA 59.936 33.333 0.00 0.00 0.00 3.58
563 2431 8.110002 GCTTTTTCTTTGTTGTATTTGTGTCAG 58.890 33.333 0.00 0.00 0.00 3.51
564 2432 9.352784 CTTTTTCTTTGTTGTATTTGTGTCAGA 57.647 29.630 0.00 0.00 0.00 3.27
565 2433 9.868277 TTTTTCTTTGTTGTATTTGTGTCAGAT 57.132 25.926 0.00 0.00 0.00 2.90
566 2434 9.868277 TTTTCTTTGTTGTATTTGTGTCAGATT 57.132 25.926 0.00 0.00 0.00 2.40
567 2435 9.868277 TTTCTTTGTTGTATTTGTGTCAGATTT 57.132 25.926 0.00 0.00 0.00 2.17
568 2436 9.868277 TTCTTTGTTGTATTTGTGTCAGATTTT 57.132 25.926 0.00 0.00 0.00 1.82
569 2437 9.868277 TCTTTGTTGTATTTGTGTCAGATTTTT 57.132 25.926 0.00 0.00 0.00 1.94
570 2438 9.904647 CTTTGTTGTATTTGTGTCAGATTTTTG 57.095 29.630 0.00 0.00 0.00 2.44
571 2439 8.994429 TTGTTGTATTTGTGTCAGATTTTTGT 57.006 26.923 0.00 0.00 0.00 2.83
572 2440 8.627487 TGTTGTATTTGTGTCAGATTTTTGTC 57.373 30.769 0.00 0.00 0.00 3.18
573 2441 8.465999 TGTTGTATTTGTGTCAGATTTTTGTCT 58.534 29.630 0.00 0.00 0.00 3.41
574 2442 9.301153 GTTGTATTTGTGTCAGATTTTTGTCTT 57.699 29.630 0.00 0.00 0.00 3.01
575 2443 9.868277 TTGTATTTGTGTCAGATTTTTGTCTTT 57.132 25.926 0.00 0.00 0.00 2.52
576 2444 9.868277 TGTATTTGTGTCAGATTTTTGTCTTTT 57.132 25.926 0.00 0.00 0.00 2.27
597 2465 6.709145 TTTTTGTGTAGCATGCAAATGATC 57.291 33.333 21.98 4.03 33.00 2.92
598 2466 5.388408 TTTGTGTAGCATGCAAATGATCA 57.612 34.783 21.98 0.00 27.52 2.92
599 2467 5.388408 TTGTGTAGCATGCAAATGATCAA 57.612 34.783 21.98 12.05 27.52 2.57
600 2468 5.388408 TGTGTAGCATGCAAATGATCAAA 57.612 34.783 21.98 0.39 27.52 2.69
601 2469 5.968254 TGTGTAGCATGCAAATGATCAAAT 58.032 33.333 21.98 0.00 27.52 2.32
602 2470 6.399743 TGTGTAGCATGCAAATGATCAAATT 58.600 32.000 21.98 0.00 27.52 1.82
603 2471 7.545489 TGTGTAGCATGCAAATGATCAAATTA 58.455 30.769 21.98 0.00 27.52 1.40
604 2472 7.703197 TGTGTAGCATGCAAATGATCAAATTAG 59.297 33.333 21.98 0.00 27.52 1.73
605 2473 7.703621 GTGTAGCATGCAAATGATCAAATTAGT 59.296 33.333 21.98 0.00 27.52 2.24
606 2474 8.252417 TGTAGCATGCAAATGATCAAATTAGTT 58.748 29.630 21.98 0.00 0.00 2.24
607 2475 9.734620 GTAGCATGCAAATGATCAAATTAGTTA 57.265 29.630 21.98 0.00 0.00 2.24
608 2476 8.638685 AGCATGCAAATGATCAAATTAGTTAC 57.361 30.769 21.98 0.00 0.00 2.50
609 2477 8.472413 AGCATGCAAATGATCAAATTAGTTACT 58.528 29.630 21.98 0.00 0.00 2.24
610 2478 8.537223 GCATGCAAATGATCAAATTAGTTACTG 58.463 33.333 14.21 0.00 0.00 2.74
611 2479 9.791820 CATGCAAATGATCAAATTAGTTACTGA 57.208 29.630 0.00 0.00 0.00 3.41
718 2586 1.330234 TTTTGGTAAAACGGGCTCCC 58.670 50.000 0.00 0.00 0.00 4.30
719 2587 0.479378 TTTGGTAAAACGGGCTCCCT 59.521 50.000 3.11 0.00 0.00 4.20
720 2588 0.250989 TTGGTAAAACGGGCTCCCTG 60.251 55.000 3.11 0.00 35.68 4.45
721 2589 1.378119 GGTAAAACGGGCTCCCTGG 60.378 63.158 3.11 0.00 33.40 4.45
722 2590 1.681076 GTAAAACGGGCTCCCTGGA 59.319 57.895 3.11 0.00 33.40 3.86
723 2591 0.392595 GTAAAACGGGCTCCCTGGAG 60.393 60.000 8.91 8.91 44.56 3.86
731 2599 4.787280 CTCCCTGGAGCCCGGTCT 62.787 72.222 0.00 0.00 35.31 3.85
732 2600 4.779733 TCCCTGGAGCCCGGTCTC 62.780 72.222 3.23 3.23 0.00 3.36
733 2601 4.787280 CCCTGGAGCCCGGTCTCT 62.787 72.222 13.02 0.00 33.70 3.10
734 2602 3.465403 CCTGGAGCCCGGTCTCTG 61.465 72.222 13.02 5.81 33.70 3.35
735 2603 4.154347 CTGGAGCCCGGTCTCTGC 62.154 72.222 13.02 6.33 33.70 4.26
738 2606 4.500116 GAGCCCGGTCTCTGCGAC 62.500 72.222 4.95 0.00 42.07 5.19
743 2611 4.838486 CGGTCTCTGCGACGCCTC 62.838 72.222 18.69 3.00 43.79 4.70
744 2612 3.749064 GGTCTCTGCGACGCCTCA 61.749 66.667 18.69 0.00 43.79 3.86
745 2613 2.505118 GTCTCTGCGACGCCTCAC 60.505 66.667 18.69 4.98 32.04 3.51
746 2614 2.673341 TCTCTGCGACGCCTCACT 60.673 61.111 18.69 0.00 0.00 3.41
747 2615 2.202544 CTCTGCGACGCCTCACTC 60.203 66.667 18.69 0.00 0.00 3.51
786 2654 2.940890 ATCGCCGTGATTCCCGCATT 62.941 55.000 0.00 0.00 31.57 3.56
825 2693 0.734253 CCACTGACTAGCGTCACTGC 60.734 60.000 0.00 0.00 44.85 4.40
870 2738 3.656045 CGTCGGCACAACCAACCC 61.656 66.667 0.00 0.00 39.03 4.11
876 2744 1.173913 GGCACAACCAACCCACTATC 58.826 55.000 0.00 0.00 38.86 2.08
882 2750 1.941377 ACCAACCCACTATCCGTACA 58.059 50.000 0.00 0.00 0.00 2.90
923 2791 5.163499 CCCTCTCTACATAAACAGACCTCAC 60.163 48.000 0.00 0.00 0.00 3.51
924 2792 5.654650 CCTCTCTACATAAACAGACCTCACT 59.345 44.000 0.00 0.00 0.00 3.41
925 2793 6.183360 CCTCTCTACATAAACAGACCTCACTC 60.183 46.154 0.00 0.00 0.00 3.51
926 2794 6.246163 TCTCTACATAAACAGACCTCACTCA 58.754 40.000 0.00 0.00 0.00 3.41
1168 3036 1.445582 CCACCGCTCGTGTTCTACC 60.446 63.158 0.80 0.00 41.26 3.18
1248 3116 2.230940 CGACGGCGCCTATCAACTG 61.231 63.158 26.68 8.67 0.00 3.16
1252 3120 1.889573 GGCGCCTATCAACTGCTCC 60.890 63.158 22.15 0.00 0.00 4.70
1705 3800 9.389755 TGGTTAATCTTTCAATCGATTGATACA 57.610 29.630 34.66 21.46 45.30 2.29
1718 3813 8.815565 ATCGATTGATACACTCTGGTATATCT 57.184 34.615 0.00 0.00 34.11 1.98
1767 3862 3.684788 GTGTGTGTAAGGTTGGAGCTATG 59.315 47.826 0.00 0.00 0.00 2.23
1828 4462 6.055588 TCAAGCAACACTAAAGCTTCTTACT 58.944 36.000 0.00 0.00 46.01 2.24
1872 4506 9.753674 TTATTTGTGTTGATCTTTAGATTCCCT 57.246 29.630 0.00 0.00 34.37 4.20
1893 4527 5.696270 CCCTGTTTCCTTTAAATTGCACTTC 59.304 40.000 0.00 0.00 0.00 3.01
1912 8190 3.936372 TCAGCTATATGTAAGTCGCCC 57.064 47.619 0.00 0.00 0.00 6.13
1927 8205 5.379732 AGTCGCCCGAAAAATAATTTTGA 57.620 34.783 0.00 0.00 38.83 2.69
1928 8206 5.961272 AGTCGCCCGAAAAATAATTTTGAT 58.039 33.333 0.00 0.00 38.83 2.57
1929 8207 6.394809 AGTCGCCCGAAAAATAATTTTGATT 58.605 32.000 0.00 0.00 38.83 2.57
1930 8208 6.530181 AGTCGCCCGAAAAATAATTTTGATTC 59.470 34.615 0.00 0.00 38.83 2.52
1931 8209 5.808030 TCGCCCGAAAAATAATTTTGATTCC 59.192 36.000 0.00 0.00 38.83 3.01
1946 8228 5.521906 TTGATTCCGTCAATTTTTGGACA 57.478 34.783 0.00 0.00 41.79 4.02
1986 8269 8.954950 TCAAGATTCATGTATCTCTTTTCTCC 57.045 34.615 14.43 0.00 33.81 3.71
1987 8270 8.542926 TCAAGATTCATGTATCTCTTTTCTCCA 58.457 33.333 14.43 0.00 33.81 3.86
1993 8276 7.397221 TCATGTATCTCTTTTCTCCATGTTGT 58.603 34.615 0.00 0.00 32.24 3.32
1996 8279 3.664107 TCTCTTTTCTCCATGTTGTCCG 58.336 45.455 0.00 0.00 0.00 4.79
2000 8284 3.755112 TTTCTCCATGTTGTCCGTGTA 57.245 42.857 0.00 0.00 0.00 2.90
2039 8323 8.581578 GTTTTTCTTTTTGACTGACCCCATATA 58.418 33.333 0.00 0.00 0.00 0.86
2087 8371 0.749454 GAAGCCCATTCCAGTGCGAT 60.749 55.000 0.00 0.00 31.14 4.58
2199 8489 0.482446 TTTGGGATGTTGGGTGAGCT 59.518 50.000 0.00 0.00 0.00 4.09
2314 8604 6.862209 TGCATAGTTGTGTTCAAGTTTCTTT 58.138 32.000 0.00 0.00 38.13 2.52
2445 8784 7.105588 AGATTTTCTTTGCAAAAGTTCCACTT 58.894 30.769 13.84 0.00 40.80 3.16
2446 8785 8.257306 AGATTTTCTTTGCAAAAGTTCCACTTA 58.743 29.630 13.84 0.00 37.47 2.24
2447 8786 8.962884 ATTTTCTTTGCAAAAGTTCCACTTAT 57.037 26.923 13.84 0.00 37.47 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.066908 GTGAGAGCTTCCTCGATCTGG 59.933 57.143 0.00 0.00 43.05 3.86
100 1961 0.953960 GGGGTGAAAGTGGCAGTACG 60.954 60.000 0.00 0.00 0.00 3.67
122 1983 2.621000 CGCGCTTTATGCTCCGTC 59.379 61.111 5.56 0.00 40.11 4.79
146 2007 9.244799 ACCAATTTACGAAAAGTGAAAGAAATC 57.755 29.630 0.00 0.00 41.95 2.17
151 2012 7.608755 CAACACCAATTTACGAAAAGTGAAAG 58.391 34.615 0.00 0.00 41.95 2.62
185 2046 0.102481 ACTAGGCCGCACATACTTCG 59.898 55.000 0.00 0.00 0.00 3.79
194 2055 0.973496 TCCATGTGTACTAGGCCGCA 60.973 55.000 0.00 0.00 0.00 5.69
266 2130 1.043673 CGTCCGAATCTTCCCTCCCT 61.044 60.000 0.00 0.00 0.00 4.20
267 2131 1.442148 CGTCCGAATCTTCCCTCCC 59.558 63.158 0.00 0.00 0.00 4.30
268 2132 1.442148 CCGTCCGAATCTTCCCTCC 59.558 63.158 0.00 0.00 0.00 4.30
269 2133 1.442148 CCCGTCCGAATCTTCCCTC 59.558 63.158 0.00 0.00 0.00 4.30
330 2198 2.265904 GCCACTTTTCGGGTCACCC 61.266 63.158 1.06 1.06 41.09 4.61
331 2199 1.228154 AGCCACTTTTCGGGTCACC 60.228 57.895 0.00 0.00 0.00 4.02
332 2200 1.949257 CAGCCACTTTTCGGGTCAC 59.051 57.895 0.00 0.00 29.87 3.67
333 2201 1.896660 GCAGCCACTTTTCGGGTCA 60.897 57.895 0.00 0.00 29.87 4.02
334 2202 1.856265 CTGCAGCCACTTTTCGGGTC 61.856 60.000 0.00 0.00 29.87 4.46
335 2203 1.898574 CTGCAGCCACTTTTCGGGT 60.899 57.895 0.00 0.00 33.53 5.28
336 2204 1.580845 CTCTGCAGCCACTTTTCGGG 61.581 60.000 9.47 0.00 0.00 5.14
337 2205 1.580845 CCTCTGCAGCCACTTTTCGG 61.581 60.000 9.47 0.00 0.00 4.30
338 2206 1.871772 CCTCTGCAGCCACTTTTCG 59.128 57.895 9.47 0.00 0.00 3.46
339 2207 0.892814 AGCCTCTGCAGCCACTTTTC 60.893 55.000 9.47 0.00 41.13 2.29
340 2208 1.152368 AGCCTCTGCAGCCACTTTT 59.848 52.632 9.47 0.00 41.13 2.27
341 2209 1.602888 CAGCCTCTGCAGCCACTTT 60.603 57.895 9.47 0.00 41.13 2.66
342 2210 2.033757 CAGCCTCTGCAGCCACTT 59.966 61.111 9.47 0.00 41.13 3.16
343 2211 2.926779 TCAGCCTCTGCAGCCACT 60.927 61.111 9.47 2.33 41.13 4.00
344 2212 2.436292 CTCAGCCTCTGCAGCCAC 60.436 66.667 9.47 0.00 41.13 5.01
345 2213 4.405671 GCTCAGCCTCTGCAGCCA 62.406 66.667 9.47 0.00 41.13 4.75
346 2214 4.098722 AGCTCAGCCTCTGCAGCC 62.099 66.667 9.47 0.00 41.13 4.85
347 2215 2.512057 GAGCTCAGCCTCTGCAGC 60.512 66.667 9.47 0.00 41.13 5.25
348 2216 2.187424 GGAGCTCAGCCTCTGCAG 59.813 66.667 17.19 7.63 41.13 4.41
349 2217 2.605601 TGGAGCTCAGCCTCTGCA 60.606 61.111 17.19 0.00 41.13 4.41
350 2218 2.125188 GTGGAGCTCAGCCTCTGC 60.125 66.667 17.19 0.00 37.95 4.26
351 2219 1.218585 CAGTGGAGCTCAGCCTCTG 59.781 63.158 17.19 11.45 39.69 3.35
352 2220 0.971959 CTCAGTGGAGCTCAGCCTCT 60.972 60.000 17.19 2.16 33.67 3.69
353 2221 1.516892 CTCAGTGGAGCTCAGCCTC 59.483 63.158 17.19 0.00 33.67 4.70
354 2222 3.710926 CTCAGTGGAGCTCAGCCT 58.289 61.111 17.19 4.58 33.67 4.58
362 2230 8.121305 AGAAATGTATATAGAGCTCAGTGGAG 57.879 38.462 17.77 0.00 44.33 3.86
363 2231 7.725844 TGAGAAATGTATATAGAGCTCAGTGGA 59.274 37.037 17.77 0.00 0.00 4.02
364 2232 7.890515 TGAGAAATGTATATAGAGCTCAGTGG 58.109 38.462 17.77 0.00 0.00 4.00
365 2233 7.541783 GCTGAGAAATGTATATAGAGCTCAGTG 59.458 40.741 23.31 11.56 45.91 3.66
366 2234 7.309744 GGCTGAGAAATGTATATAGAGCTCAGT 60.310 40.741 23.31 6.29 45.91 3.41
367 2235 7.035004 GGCTGAGAAATGTATATAGAGCTCAG 58.965 42.308 17.77 20.92 46.54 3.35
368 2236 6.494835 TGGCTGAGAAATGTATATAGAGCTCA 59.505 38.462 17.77 2.09 0.00 4.26
369 2237 6.929625 TGGCTGAGAAATGTATATAGAGCTC 58.070 40.000 5.27 5.27 0.00 4.09
370 2238 6.924913 TGGCTGAGAAATGTATATAGAGCT 57.075 37.500 0.00 0.00 0.00 4.09
371 2239 7.969536 TTTGGCTGAGAAATGTATATAGAGC 57.030 36.000 0.00 0.00 0.00 4.09
376 2244 9.646522 AAGGTATTTTGGCTGAGAAATGTATAT 57.353 29.630 0.00 0.00 0.00 0.86
377 2245 9.474313 AAAGGTATTTTGGCTGAGAAATGTATA 57.526 29.630 0.00 0.00 0.00 1.47
378 2246 7.961326 AAGGTATTTTGGCTGAGAAATGTAT 57.039 32.000 0.00 0.00 0.00 2.29
379 2247 7.775053 AAAGGTATTTTGGCTGAGAAATGTA 57.225 32.000 0.00 0.00 0.00 2.29
380 2248 6.670695 AAAGGTATTTTGGCTGAGAAATGT 57.329 33.333 0.00 0.00 0.00 2.71
381 2249 7.656948 TGAAAAAGGTATTTTGGCTGAGAAATG 59.343 33.333 0.00 0.00 38.62 2.32
382 2250 7.734942 TGAAAAAGGTATTTTGGCTGAGAAAT 58.265 30.769 0.00 0.00 38.62 2.17
383 2251 7.118496 TGAAAAAGGTATTTTGGCTGAGAAA 57.882 32.000 0.00 0.00 38.62 2.52
384 2252 6.723298 TGAAAAAGGTATTTTGGCTGAGAA 57.277 33.333 0.00 0.00 38.62 2.87
385 2253 6.916360 ATGAAAAAGGTATTTTGGCTGAGA 57.084 33.333 0.00 0.00 38.62 3.27
386 2254 8.306761 AGTTATGAAAAAGGTATTTTGGCTGAG 58.693 33.333 0.00 0.00 38.62 3.35
387 2255 8.189119 AGTTATGAAAAAGGTATTTTGGCTGA 57.811 30.769 0.00 0.00 38.62 4.26
388 2256 8.087750 TGAGTTATGAAAAAGGTATTTTGGCTG 58.912 33.333 0.00 0.00 38.62 4.85
389 2257 8.189119 TGAGTTATGAAAAAGGTATTTTGGCT 57.811 30.769 0.00 0.00 38.62 4.75
390 2258 8.825667 TTGAGTTATGAAAAAGGTATTTTGGC 57.174 30.769 0.00 0.00 38.62 4.52
512 2380 9.423061 GCCTATTTCAATCTGTGTATTTGTTTT 57.577 29.630 0.00 0.00 0.00 2.43
513 2381 8.806146 AGCCTATTTCAATCTGTGTATTTGTTT 58.194 29.630 0.00 0.00 0.00 2.83
514 2382 8.353423 AGCCTATTTCAATCTGTGTATTTGTT 57.647 30.769 0.00 0.00 0.00 2.83
515 2383 7.944729 AGCCTATTTCAATCTGTGTATTTGT 57.055 32.000 0.00 0.00 0.00 2.83
516 2384 9.643693 AAAAGCCTATTTCAATCTGTGTATTTG 57.356 29.630 0.00 0.00 0.00 2.32
518 2386 9.860898 GAAAAAGCCTATTTCAATCTGTGTATT 57.139 29.630 2.58 0.00 36.89 1.89
519 2387 9.247861 AGAAAAAGCCTATTTCAATCTGTGTAT 57.752 29.630 8.59 0.00 38.86 2.29
520 2388 8.635765 AGAAAAAGCCTATTTCAATCTGTGTA 57.364 30.769 8.59 0.00 38.86 2.90
521 2389 7.530426 AGAAAAAGCCTATTTCAATCTGTGT 57.470 32.000 8.59 0.00 38.86 3.72
522 2390 8.706035 CAAAGAAAAAGCCTATTTCAATCTGTG 58.294 33.333 8.59 0.00 38.86 3.66
523 2391 8.424133 ACAAAGAAAAAGCCTATTTCAATCTGT 58.576 29.630 8.59 4.29 38.86 3.41
524 2392 8.822652 ACAAAGAAAAAGCCTATTTCAATCTG 57.177 30.769 8.59 3.84 38.86 2.90
525 2393 9.264719 CAACAAAGAAAAAGCCTATTTCAATCT 57.735 29.630 8.59 0.00 38.86 2.40
526 2394 9.045223 ACAACAAAGAAAAAGCCTATTTCAATC 57.955 29.630 8.59 0.00 38.86 2.67
527 2395 8.962884 ACAACAAAGAAAAAGCCTATTTCAAT 57.037 26.923 8.59 0.00 38.86 2.57
532 2400 9.830975 ACAAATACAACAAAGAAAAAGCCTATT 57.169 25.926 0.00 0.00 0.00 1.73
533 2401 9.260002 CACAAATACAACAAAGAAAAAGCCTAT 57.740 29.630 0.00 0.00 0.00 2.57
534 2402 8.254508 ACACAAATACAACAAAGAAAAAGCCTA 58.745 29.630 0.00 0.00 0.00 3.93
535 2403 7.102993 ACACAAATACAACAAAGAAAAAGCCT 58.897 30.769 0.00 0.00 0.00 4.58
536 2404 7.064016 TGACACAAATACAACAAAGAAAAAGCC 59.936 33.333 0.00 0.00 0.00 4.35
537 2405 7.958674 TGACACAAATACAACAAAGAAAAAGC 58.041 30.769 0.00 0.00 0.00 3.51
538 2406 9.352784 TCTGACACAAATACAACAAAGAAAAAG 57.647 29.630 0.00 0.00 0.00 2.27
539 2407 9.868277 ATCTGACACAAATACAACAAAGAAAAA 57.132 25.926 0.00 0.00 0.00 1.94
540 2408 9.868277 AATCTGACACAAATACAACAAAGAAAA 57.132 25.926 0.00 0.00 0.00 2.29
541 2409 9.868277 AAATCTGACACAAATACAACAAAGAAA 57.132 25.926 0.00 0.00 0.00 2.52
542 2410 9.868277 AAAATCTGACACAAATACAACAAAGAA 57.132 25.926 0.00 0.00 0.00 2.52
543 2411 9.868277 AAAAATCTGACACAAATACAACAAAGA 57.132 25.926 0.00 0.00 0.00 2.52
544 2412 9.904647 CAAAAATCTGACACAAATACAACAAAG 57.095 29.630 0.00 0.00 0.00 2.77
545 2413 9.429359 ACAAAAATCTGACACAAATACAACAAA 57.571 25.926 0.00 0.00 0.00 2.83
546 2414 8.994429 ACAAAAATCTGACACAAATACAACAA 57.006 26.923 0.00 0.00 0.00 2.83
547 2415 8.465999 AGACAAAAATCTGACACAAATACAACA 58.534 29.630 0.00 0.00 0.00 3.33
548 2416 8.856490 AGACAAAAATCTGACACAAATACAAC 57.144 30.769 0.00 0.00 0.00 3.32
549 2417 9.868277 AAAGACAAAAATCTGACACAAATACAA 57.132 25.926 0.00 0.00 0.00 2.41
550 2418 9.868277 AAAAGACAAAAATCTGACACAAATACA 57.132 25.926 0.00 0.00 0.00 2.29
574 2442 6.221659 TGATCATTTGCATGCTACACAAAAA 58.778 32.000 20.33 9.35 36.90 1.94
575 2443 5.780984 TGATCATTTGCATGCTACACAAAA 58.219 33.333 20.33 10.10 36.90 2.44
576 2444 5.388408 TGATCATTTGCATGCTACACAAA 57.612 34.783 20.33 10.86 37.66 2.83
577 2445 5.388408 TTGATCATTTGCATGCTACACAA 57.612 34.783 20.33 12.42 0.00 3.33
578 2446 5.388408 TTTGATCATTTGCATGCTACACA 57.612 34.783 20.33 7.23 0.00 3.72
579 2447 6.897259 AATTTGATCATTTGCATGCTACAC 57.103 33.333 20.33 4.74 0.00 2.90
580 2448 7.774134 ACTAATTTGATCATTTGCATGCTACA 58.226 30.769 20.33 2.10 0.00 2.74
581 2449 8.638685 AACTAATTTGATCATTTGCATGCTAC 57.361 30.769 20.33 0.00 0.00 3.58
582 2450 9.734620 GTAACTAATTTGATCATTTGCATGCTA 57.265 29.630 20.33 8.83 0.00 3.49
583 2451 8.472413 AGTAACTAATTTGATCATTTGCATGCT 58.528 29.630 20.33 0.00 0.00 3.79
584 2452 8.537223 CAGTAACTAATTTGATCATTTGCATGC 58.463 33.333 11.82 11.82 0.00 4.06
585 2453 9.791820 TCAGTAACTAATTTGATCATTTGCATG 57.208 29.630 0.00 0.00 0.00 4.06
698 2566 1.687660 GGGAGCCCGTTTTACCAAAAA 59.312 47.619 0.00 0.00 32.15 1.94
699 2567 1.133419 AGGGAGCCCGTTTTACCAAAA 60.133 47.619 0.00 0.00 41.95 2.44
700 2568 0.479378 AGGGAGCCCGTTTTACCAAA 59.521 50.000 0.00 0.00 41.95 3.28
701 2569 0.250989 CAGGGAGCCCGTTTTACCAA 60.251 55.000 0.00 0.00 41.95 3.67
702 2570 1.377229 CAGGGAGCCCGTTTTACCA 59.623 57.895 0.00 0.00 41.95 3.25
703 2571 1.378119 CCAGGGAGCCCGTTTTACC 60.378 63.158 0.00 0.00 41.95 2.85
704 2572 0.392595 CTCCAGGGAGCCCGTTTTAC 60.393 60.000 1.73 0.00 41.95 2.01
705 2573 1.988015 CTCCAGGGAGCCCGTTTTA 59.012 57.895 1.73 0.00 41.95 1.52
706 2574 2.757077 CTCCAGGGAGCCCGTTTT 59.243 61.111 1.73 0.00 41.95 2.43
714 2582 4.787280 AGACCGGGCTCCAGGGAG 62.787 72.222 2.12 11.06 44.56 4.30
715 2583 4.779733 GAGACCGGGCTCCAGGGA 62.780 72.222 28.29 0.00 0.00 4.20
716 2584 4.787280 AGAGACCGGGCTCCAGGG 62.787 72.222 34.21 2.24 35.49 4.45
717 2585 3.465403 CAGAGACCGGGCTCCAGG 61.465 72.222 34.21 19.82 35.49 4.45
718 2586 4.154347 GCAGAGACCGGGCTCCAG 62.154 72.222 34.21 26.58 35.49 3.86
721 2589 4.500116 GTCGCAGAGACCGGGCTC 62.500 72.222 31.20 31.20 43.95 4.70
726 2594 4.838486 GAGGCGTCGCAGAGACCG 62.838 72.222 20.50 0.00 46.92 4.79
727 2595 3.749064 TGAGGCGTCGCAGAGACC 61.749 66.667 20.50 0.00 46.92 3.85
728 2596 2.505118 GTGAGGCGTCGCAGAGAC 60.505 66.667 20.50 5.88 46.16 3.36
729 2597 2.673341 AGTGAGGCGTCGCAGAGA 60.673 61.111 20.50 0.00 36.95 3.10
730 2598 2.202544 GAGTGAGGCGTCGCAGAG 60.203 66.667 20.50 0.00 36.95 3.35
731 2599 3.749064 GGAGTGAGGCGTCGCAGA 61.749 66.667 20.50 0.00 35.46 4.26
760 2628 1.673033 GGAATCACGGCGATGGATAGG 60.673 57.143 16.62 0.00 33.40 2.57
762 2630 0.320374 GGGAATCACGGCGATGGATA 59.680 55.000 16.62 0.00 33.40 2.59
870 2738 2.032722 GCGAGAGTCTGTACGGATAGTG 60.033 54.545 7.85 0.00 0.00 2.74
967 2835 0.099791 GAAAGACTAGCTCGCTCGCT 59.900 55.000 0.00 2.17 43.83 4.93
968 2836 0.099791 AGAAAGACTAGCTCGCTCGC 59.900 55.000 0.00 0.00 0.00 5.03
969 2837 2.096819 AGAAGAAAGACTAGCTCGCTCG 59.903 50.000 0.00 0.00 0.00 5.03
1064 2932 2.293318 ATCTCGGCTGCCTTGGTCA 61.293 57.895 17.92 0.00 0.00 4.02
1065 2933 1.817099 CATCTCGGCTGCCTTGGTC 60.817 63.158 17.92 0.00 0.00 4.02
1168 3036 4.889832 AGTAGTACCGGTAATCGTCTTG 57.110 45.455 19.36 0.00 37.11 3.02
1235 3103 1.153369 TGGAGCAGTTGATAGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
1252 3120 2.115911 CGTCCTCCTCCTCGTCCTG 61.116 68.421 0.00 0.00 0.00 3.86
1497 3566 4.142049 CGGAGGATCTTGAAGTAGAGCTTT 60.142 45.833 0.00 0.00 34.18 3.51
1705 3800 8.739108 TGGAGTACTACTAGATATACCAGAGT 57.261 38.462 6.66 0.00 0.00 3.24
1718 3813 8.043113 TGAAAACGTAGAGATGGAGTACTACTA 58.957 37.037 6.66 0.00 34.81 1.82
1767 3862 3.999663 AGATTTAGCTTATCGCAGATGGC 59.000 43.478 0.00 6.00 45.12 4.40
1828 4462 8.461222 CACAAATAAAGGAGCAAACATCATCTA 58.539 33.333 0.00 0.00 0.00 1.98
1869 4503 5.213891 AGTGCAATTTAAAGGAAACAGGG 57.786 39.130 0.00 0.00 0.00 4.45
1871 4505 6.074142 GCTGAAGTGCAATTTAAAGGAAACAG 60.074 38.462 0.00 1.52 0.00 3.16
1872 4506 5.752955 GCTGAAGTGCAATTTAAAGGAAACA 59.247 36.000 0.00 0.00 0.00 2.83
1893 4527 2.228103 TCGGGCGACTTACATATAGCTG 59.772 50.000 0.00 0.00 0.00 4.24
1927 8205 5.068460 TCAACTGTCCAAAAATTGACGGAAT 59.932 36.000 8.93 0.00 0.00 3.01
1928 8206 4.399618 TCAACTGTCCAAAAATTGACGGAA 59.600 37.500 8.93 0.00 0.00 4.30
1929 8207 3.948473 TCAACTGTCCAAAAATTGACGGA 59.052 39.130 8.93 0.00 0.00 4.69
1930 8208 4.300189 TCAACTGTCCAAAAATTGACGG 57.700 40.909 1.88 1.88 0.00 4.79
1931 8209 6.826893 AAATCAACTGTCCAAAAATTGACG 57.173 33.333 0.00 0.00 32.42 4.35
1970 8253 6.825721 GGACAACATGGAGAAAAGAGATACAT 59.174 38.462 0.00 0.00 0.00 2.29
1983 8266 3.334691 ACAATACACGGACAACATGGAG 58.665 45.455 0.00 0.00 0.00 3.86
1986 8269 4.679197 CCAAAACAATACACGGACAACATG 59.321 41.667 0.00 0.00 0.00 3.21
1987 8270 4.261825 CCCAAAACAATACACGGACAACAT 60.262 41.667 0.00 0.00 0.00 2.71
1993 8276 1.883275 CAGCCCAAAACAATACACGGA 59.117 47.619 0.00 0.00 0.00 4.69
1996 8279 5.815222 AGAAAAACAGCCCAAAACAATACAC 59.185 36.000 0.00 0.00 0.00 2.90
2000 8284 6.832520 AAAAGAAAAACAGCCCAAAACAAT 57.167 29.167 0.00 0.00 0.00 2.71
2039 8323 9.799106 CCCATTATAGAATTGACTGTCCTAAAT 57.201 33.333 5.17 0.00 0.00 1.40
2087 8371 9.520515 AAACAAATGAGAAAGAAGAAGGCTATA 57.479 29.630 0.00 0.00 0.00 1.31
2458 8797 8.472236 GCGCTATTTTAAAATCAGCAAGAATAC 58.528 33.333 25.26 12.37 31.41 1.89
2468 8807 9.970243 CATGAAAATTGCGCTATTTTAAAATCA 57.030 25.926 32.25 26.72 37.72 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.