Multiple sequence alignment - TraesCS1A01G106500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G106500 chr1A 100.000 6138 0 0 1 6138 104224700 104230837 0.000000e+00 11335.0
1 TraesCS1A01G106500 chr1B 94.479 1775 56 16 2236 3990 150539758 150541510 0.000000e+00 2697.0
2 TraesCS1A01G106500 chr1B 94.822 1661 54 22 3989 5640 150541592 150543229 0.000000e+00 2562.0
3 TraesCS1A01G106500 chr1B 95.648 965 33 3 885 1849 150538520 150539475 0.000000e+00 1541.0
4 TraesCS1A01G106500 chr1B 93.000 300 18 2 1881 2178 150539476 150539774 9.450000e-118 435.0
5 TraesCS1A01G106500 chr1B 89.823 226 22 1 5746 5970 150543846 150544071 7.780000e-74 289.0
6 TraesCS1A01G106500 chr1B 94.798 173 8 1 1 172 150537371 150537543 1.010000e-67 268.0
7 TraesCS1A01G106500 chr1D 94.145 1691 64 14 2238 3917 101140978 101139312 0.000000e+00 2542.0
8 TraesCS1A01G106500 chr1D 94.774 1282 54 9 3968 5244 101139311 101138038 0.000000e+00 1984.0
9 TraesCS1A01G106500 chr1D 93.100 1029 40 10 843 1849 101142282 101141263 0.000000e+00 1478.0
10 TraesCS1A01G106500 chr1D 91.429 490 37 2 176 663 101143111 101142625 0.000000e+00 667.0
11 TraesCS1A01G106500 chr1D 90.991 333 28 2 5639 5970 101104160 101103829 1.210000e-121 448.0
12 TraesCS1A01G106500 chr1D 93.709 302 13 5 1881 2178 101141262 101140963 1.210000e-121 448.0
13 TraesCS1A01G106500 chr1D 90.385 260 9 6 5240 5484 101106745 101106487 1.650000e-85 327.0
14 TraesCS1A01G106500 chr1D 91.716 169 14 0 5970 6138 447753459 447753627 1.030000e-57 235.0
15 TraesCS1A01G106500 chr1D 96.552 87 3 0 86 172 101143227 101143141 1.780000e-30 145.0
16 TraesCS1A01G106500 chr1D 92.857 84 4 1 1 82 101276780 101276697 3.010000e-23 121.0
17 TraesCS1A01G106500 chr3D 82.735 446 53 11 5168 5591 402341402 402340959 5.810000e-100 375.0
18 TraesCS1A01G106500 chr3D 90.303 165 16 0 5973 6137 126248676 126248512 3.730000e-52 217.0
19 TraesCS1A01G106500 chr3D 94.444 36 2 0 3932 3967 528152833 528152868 8.590000e-04 56.5
20 TraesCS1A01G106500 chr7D 93.939 165 10 0 5974 6138 604462546 604462382 3.670000e-62 250.0
21 TraesCS1A01G106500 chr7D 100.000 36 0 0 3931 3966 192021169 192021134 3.970000e-07 67.6
22 TraesCS1A01G106500 chr7D 97.368 38 1 0 3930 3967 96769735 96769772 1.430000e-06 65.8
23 TraesCS1A01G106500 chr7A 92.771 166 11 1 5973 6138 610431534 610431370 7.950000e-59 239.0
24 TraesCS1A01G106500 chr7A 93.103 58 4 0 657 714 250603480 250603423 1.100000e-12 86.1
25 TraesCS1A01G106500 chr5D 92.727 165 12 0 5974 6138 363008407 363008243 7.950000e-59 239.0
26 TraesCS1A01G106500 chr5A 91.379 174 15 0 5965 6138 673387998 673388171 7.950000e-59 239.0
27 TraesCS1A01G106500 chr5A 89.714 175 18 0 5964 6138 481883899 481884073 2.230000e-54 224.0
28 TraesCS1A01G106500 chr5A 90.964 166 15 0 5973 6138 573659623 573659788 2.230000e-54 224.0
29 TraesCS1A01G106500 chr5A 92.982 57 3 1 659 714 548496621 548496565 1.420000e-11 82.4
30 TraesCS1A01G106500 chr5A 91.228 57 3 2 659 714 548455861 548455806 6.600000e-10 76.8
31 TraesCS1A01G106500 chr5A 93.878 49 2 1 3930 3977 677957885 677957933 8.530000e-09 73.1
32 TraesCS1A01G106500 chr5A 90.566 53 2 3 3932 3982 248531275 248531326 3.970000e-07 67.6
33 TraesCS1A01G106500 chr2A 92.169 166 13 0 5973 6138 676713984 676713819 1.030000e-57 235.0
34 TraesCS1A01G106500 chr6A 96.364 55 2 0 657 711 535893089 535893143 2.360000e-14 91.6
35 TraesCS1A01G106500 chrUn 94.545 55 3 0 657 711 321243135 321243189 1.100000e-12 86.1
36 TraesCS1A01G106500 chrUn 93.103 58 4 0 657 714 322420853 322420796 1.100000e-12 86.1
37 TraesCS1A01G106500 chrUn 97.368 38 1 0 3930 3967 27085801 27085764 1.430000e-06 65.8
38 TraesCS1A01G106500 chr4B 91.379 58 4 1 660 716 37572756 37572813 1.830000e-10 78.7
39 TraesCS1A01G106500 chr3B 92.593 54 3 1 661 713 763232057 763232110 6.600000e-10 76.8
40 TraesCS1A01G106500 chr3B 88.462 52 4 2 3930 3979 470852066 470852117 1.850000e-05 62.1
41 TraesCS1A01G106500 chr2B 88.889 63 4 3 662 722 357948999 357948938 2.370000e-09 75.0
42 TraesCS1A01G106500 chr2D 97.368 38 1 0 3930 3967 114515540 114515577 1.430000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G106500 chr1A 104224700 104230837 6137 False 11335.000000 11335 100.000000 1 6138 1 chr1A.!!$F1 6137
1 TraesCS1A01G106500 chr1B 150537371 150544071 6700 False 1298.666667 2697 93.761667 1 5970 6 chr1B.!!$F1 5969
2 TraesCS1A01G106500 chr1D 101138038 101143227 5189 True 1210.666667 2542 93.951500 86 5244 6 chr1D.!!$R3 5158
3 TraesCS1A01G106500 chr1D 101103829 101106745 2916 True 387.500000 448 90.688000 5240 5970 2 chr1D.!!$R2 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
908 1376 0.465705 ATCGTGGCCGTTGATCTCAT 59.534 50.000 0.00 0.0 35.01 2.90 F
1533 2021 0.389948 GGAACTAGTGGTGGCGACTG 60.390 60.000 0.00 0.0 0.00 3.51 F
2211 2704 0.251787 GCAGGGGGACAAATTCAGGT 60.252 55.000 0.00 0.0 0.00 4.00 F
2212 2705 1.005450 GCAGGGGGACAAATTCAGGTA 59.995 52.381 0.00 0.0 0.00 3.08 F
3103 3609 1.392589 AGTGAGCACTGTGTTTTGGG 58.607 50.000 9.86 0.0 40.75 4.12 F
4066 4667 1.067425 TCCGCCGTGCATATGGTATAC 60.067 52.381 4.56 0.0 35.28 1.47 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 2365 0.032130 ATCTCGGTCACGCGCATTAT 59.968 50.000 5.73 0.0 40.69 1.28 R
2546 3041 1.895131 ACCAGCTTTGCGGAAATGAAT 59.105 42.857 1.45 0.0 0.00 2.57 R
3483 3993 4.018490 TCCAGAGCGTACTAAACATACCA 58.982 43.478 0.00 0.0 0.00 3.25 R
4026 4627 5.221263 GCGGAGTTCCTATCACATTAAGAGA 60.221 44.000 0.00 0.0 0.00 3.10 R
4408 5012 2.337359 ACCAGGTAAAGTCCTAGCCA 57.663 50.000 0.00 0.0 35.87 4.75 R
5979 9116 0.028902 GTTCACAACGGCAACCAGAC 59.971 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
128 130 1.493022 TGGCCACTAACTCACCACTTT 59.507 47.619 0.00 0.00 0.00 2.66
173 201 0.701303 GTTGTTAGACGTGTCGCTCG 59.299 55.000 0.00 0.95 34.09 5.03
226 255 2.696707 ACGGAAGGCAATCGATAGGTTA 59.303 45.455 0.00 0.00 37.28 2.85
261 290 9.586435 GGAGAAGATGAAAAGAAAAGAAAAACA 57.414 29.630 0.00 0.00 0.00 2.83
283 312 7.756395 ACATGGATTCCAATATTGATGAGAC 57.244 36.000 17.23 3.51 36.95 3.36
285 314 7.230108 ACATGGATTCCAATATTGATGAGACAC 59.770 37.037 17.23 2.74 36.95 3.67
299 328 4.118093 TGAGACACAGTCAAACGAGAAA 57.882 40.909 0.00 0.00 34.60 2.52
392 421 6.104243 TCCTAATTACTGTCTATGAGGAGGGA 59.896 42.308 5.29 0.00 29.58 4.20
421 450 9.593134 GATGTAATAACTCCATCTTATAGCCAG 57.407 37.037 0.00 0.00 33.74 4.85
428 457 5.105554 ACTCCATCTTATAGCCAGCGATAAG 60.106 44.000 20.21 20.21 40.54 1.73
446 476 6.956520 GCGATAAGCTCTTTCTTTTAGTTCAC 59.043 38.462 0.00 0.00 44.04 3.18
470 504 6.264518 ACACCAGAAGAATGAAATAACCGTTT 59.735 34.615 0.00 0.00 0.00 3.60
494 528 1.064463 AGATGTAGGCATTGGTGGTGG 60.064 52.381 0.00 0.00 35.07 4.61
597 631 3.181475 GGTTCGTGCCATATTCTGAGAGA 60.181 47.826 0.00 0.00 0.00 3.10
607 641 5.185635 CCATATTCTGAGAGATGGAGACTCC 59.814 48.000 15.13 15.13 41.23 3.85
671 707 9.875691 TGAGATTAATCAATAATACTCCATCCG 57.124 33.333 17.56 0.00 34.30 4.18
674 710 9.877178 GATTAATCAATAATACTCCATCCGTCT 57.123 33.333 10.68 0.00 34.30 4.18
675 711 9.658799 ATTAATCAATAATACTCCATCCGTCTG 57.341 33.333 0.00 0.00 32.33 3.51
677 713 6.724893 TCAATAATACTCCATCCGTCTGAA 57.275 37.500 0.00 0.00 0.00 3.02
678 714 7.119709 TCAATAATACTCCATCCGTCTGAAA 57.880 36.000 0.00 0.00 0.00 2.69
679 715 7.561251 TCAATAATACTCCATCCGTCTGAAAA 58.439 34.615 0.00 0.00 0.00 2.29
680 716 8.044309 TCAATAATACTCCATCCGTCTGAAAAA 58.956 33.333 0.00 0.00 0.00 1.94
705 741 9.533831 AAACTTGTCCCTCAAATAAATGTATCT 57.466 29.630 0.00 0.00 35.48 1.98
710 746 9.391006 TGTCCCTCAAATAAATGTATCTAACAC 57.609 33.333 0.00 0.00 42.09 3.32
711 747 9.391006 GTCCCTCAAATAAATGTATCTAACACA 57.609 33.333 0.00 0.00 42.09 3.72
756 1001 5.972935 TCCAATAGCTTTGTATTCGACTCA 58.027 37.500 0.00 0.00 0.00 3.41
770 1015 9.232082 TGTATTCGACTCAAAAATTCAAGTTTG 57.768 29.630 0.00 0.00 36.30 2.93
789 1034 8.855279 CAAGTTTGTAATCAACGAAAGAAACAA 58.145 29.630 0.00 0.00 33.12 2.83
792 1037 9.068008 GTTTGTAATCAACGAAAGAAACAAAGA 57.932 29.630 14.25 0.00 36.49 2.52
794 1039 6.910433 TGTAATCAACGAAAGAAACAAAGAGC 59.090 34.615 0.00 0.00 0.00 4.09
795 1040 4.955925 TCAACGAAAGAAACAAAGAGCA 57.044 36.364 0.00 0.00 0.00 4.26
796 1041 5.499139 TCAACGAAAGAAACAAAGAGCAT 57.501 34.783 0.00 0.00 0.00 3.79
798 1043 6.329496 TCAACGAAAGAAACAAAGAGCATTT 58.671 32.000 0.00 0.00 0.00 2.32
799 1044 6.811170 TCAACGAAAGAAACAAAGAGCATTTT 59.189 30.769 0.00 0.00 0.00 1.82
801 1046 5.748630 ACGAAAGAAACAAAGAGCATTTTCC 59.251 36.000 0.00 0.00 0.00 3.13
803 1048 4.607293 AGAAACAAAGAGCATTTTCCCC 57.393 40.909 0.00 0.00 0.00 4.81
804 1049 3.324846 AGAAACAAAGAGCATTTTCCCCC 59.675 43.478 0.00 0.00 0.00 5.40
822 1067 2.409948 CCCAAGGGAAGAGCAGTAAG 57.590 55.000 0.00 0.00 37.50 2.34
823 1068 1.909302 CCCAAGGGAAGAGCAGTAAGA 59.091 52.381 0.00 0.00 37.50 2.10
824 1069 2.093235 CCCAAGGGAAGAGCAGTAAGAG 60.093 54.545 0.00 0.00 37.50 2.85
826 1071 3.118811 CCAAGGGAAGAGCAGTAAGAGAG 60.119 52.174 0.00 0.00 0.00 3.20
827 1072 2.107366 AGGGAAGAGCAGTAAGAGAGC 58.893 52.381 0.00 0.00 0.00 4.09
828 1073 1.138069 GGGAAGAGCAGTAAGAGAGCC 59.862 57.143 0.00 0.00 0.00 4.70
830 1075 2.234908 GGAAGAGCAGTAAGAGAGCCAA 59.765 50.000 0.00 0.00 0.00 4.52
831 1076 3.520569 GAAGAGCAGTAAGAGAGCCAAG 58.479 50.000 0.00 0.00 0.00 3.61
832 1077 2.813907 AGAGCAGTAAGAGAGCCAAGA 58.186 47.619 0.00 0.00 0.00 3.02
833 1078 2.760092 AGAGCAGTAAGAGAGCCAAGAG 59.240 50.000 0.00 0.00 0.00 2.85
835 1080 3.169099 AGCAGTAAGAGAGCCAAGAGAA 58.831 45.455 0.00 0.00 0.00 2.87
836 1081 3.195396 AGCAGTAAGAGAGCCAAGAGAAG 59.805 47.826 0.00 0.00 0.00 2.85
848 1114 4.530161 AGCCAAGAGAAGAACAGACAGTAT 59.470 41.667 0.00 0.00 0.00 2.12
908 1376 0.465705 ATCGTGGCCGTTGATCTCAT 59.534 50.000 0.00 0.00 35.01 2.90
1193 1661 2.579787 CGCCAGCTTCGAGGTACG 60.580 66.667 0.00 0.00 44.09 3.67
1367 1841 4.595986 TGCCCATGATGATAGATTGATGG 58.404 43.478 0.00 0.00 0.00 3.51
1370 1844 5.479375 GCCCATGATGATAGATTGATGGTTT 59.521 40.000 0.00 0.00 30.29 3.27
1373 1847 7.375834 CCATGATGATAGATTGATGGTTTTGG 58.624 38.462 0.00 0.00 0.00 3.28
1487 1975 1.194781 TCTTCCTGTGGCTCTGGGAC 61.195 60.000 11.81 0.00 36.08 4.46
1502 1990 5.813157 GCTCTGGGACACTAATCTTTTAGTC 59.187 44.000 0.00 0.00 44.94 2.59
1503 1991 6.295719 TCTGGGACACTAATCTTTTAGTCC 57.704 41.667 0.00 0.00 44.94 3.85
1529 2017 4.278956 GTGGAACTAGTGGTGGCG 57.721 61.111 0.00 0.00 0.00 5.69
1530 2018 1.669440 GTGGAACTAGTGGTGGCGA 59.331 57.895 0.00 0.00 0.00 5.54
1531 2019 0.669625 GTGGAACTAGTGGTGGCGAC 60.670 60.000 0.00 0.00 0.00 5.19
1532 2020 0.830444 TGGAACTAGTGGTGGCGACT 60.830 55.000 0.00 0.00 0.00 4.18
1533 2021 0.389948 GGAACTAGTGGTGGCGACTG 60.390 60.000 0.00 0.00 0.00 3.51
1534 2022 0.389948 GAACTAGTGGTGGCGACTGG 60.390 60.000 0.00 0.00 0.00 4.00
1535 2023 2.125512 CTAGTGGTGGCGACTGGC 60.126 66.667 0.00 0.00 42.51 4.85
1811 2301 5.256474 ACCTGGAATTCGACATTTTCTGAT 58.744 37.500 0.00 0.00 0.00 2.90
1822 2312 6.089016 TCGACATTTTCTGATCAGACGTTAAC 59.911 38.462 25.07 13.76 37.14 2.01
1849 2339 8.956426 GTAAATCAAATCATTAGTGAACCCAGA 58.044 33.333 0.00 0.00 38.01 3.86
1850 2340 7.636150 AATCAAATCATTAGTGAACCCAGAG 57.364 36.000 0.00 0.00 38.01 3.35
1851 2341 6.373005 TCAAATCATTAGTGAACCCAGAGA 57.627 37.500 0.00 0.00 38.01 3.10
1852 2342 6.173339 TCAAATCATTAGTGAACCCAGAGAC 58.827 40.000 0.00 0.00 38.01 3.36
1853 2343 5.762179 AATCATTAGTGAACCCAGAGACA 57.238 39.130 0.00 0.00 38.01 3.41
1854 2344 5.762179 ATCATTAGTGAACCCAGAGACAA 57.238 39.130 0.00 0.00 38.01 3.18
1855 2345 5.152623 TCATTAGTGAACCCAGAGACAAG 57.847 43.478 0.00 0.00 0.00 3.16
1856 2346 3.402628 TTAGTGAACCCAGAGACAAGC 57.597 47.619 0.00 0.00 0.00 4.01
1857 2347 1.428869 AGTGAACCCAGAGACAAGCT 58.571 50.000 0.00 0.00 0.00 3.74
1858 2348 2.609747 AGTGAACCCAGAGACAAGCTA 58.390 47.619 0.00 0.00 0.00 3.32
1859 2349 2.564947 AGTGAACCCAGAGACAAGCTAG 59.435 50.000 0.00 0.00 0.00 3.42
1860 2350 2.300437 GTGAACCCAGAGACAAGCTAGT 59.700 50.000 0.00 0.00 0.00 2.57
1861 2351 3.510360 GTGAACCCAGAGACAAGCTAGTA 59.490 47.826 0.00 0.00 0.00 1.82
1862 2352 4.160626 GTGAACCCAGAGACAAGCTAGTAT 59.839 45.833 0.00 0.00 0.00 2.12
1863 2353 4.777896 TGAACCCAGAGACAAGCTAGTATT 59.222 41.667 0.00 0.00 0.00 1.89
1864 2354 5.248477 TGAACCCAGAGACAAGCTAGTATTT 59.752 40.000 0.00 0.00 0.00 1.40
1865 2355 5.346181 ACCCAGAGACAAGCTAGTATTTC 57.654 43.478 0.00 0.00 0.00 2.17
1866 2356 5.026790 ACCCAGAGACAAGCTAGTATTTCT 58.973 41.667 0.00 0.00 0.00 2.52
1867 2357 5.485708 ACCCAGAGACAAGCTAGTATTTCTT 59.514 40.000 0.00 0.00 0.00 2.52
1868 2358 6.668283 ACCCAGAGACAAGCTAGTATTTCTTA 59.332 38.462 0.00 0.00 0.00 2.10
1869 2359 7.345914 ACCCAGAGACAAGCTAGTATTTCTTAT 59.654 37.037 0.00 0.00 0.00 1.73
1870 2360 8.861086 CCCAGAGACAAGCTAGTATTTCTTATA 58.139 37.037 0.00 0.00 0.00 0.98
1901 2391 1.828832 GCGTGACCGAGATAACAGAG 58.171 55.000 0.00 0.00 35.63 3.35
1960 2450 6.392354 CATTCAGCCACACATTAACTCATTT 58.608 36.000 0.00 0.00 0.00 2.32
1967 2457 9.777297 AGCCACACATTAACTCATTTTAATTTT 57.223 25.926 0.00 0.00 30.65 1.82
1992 2482 7.872138 TCCTCTTATTTGAAATGATGGGTACT 58.128 34.615 0.00 0.00 0.00 2.73
1994 2484 9.627123 CCTCTTATTTGAAATGATGGGTACTTA 57.373 33.333 0.00 0.00 0.00 2.24
2048 2541 6.228995 AGGGCTTAGAACTTTGTGTTACTAC 58.771 40.000 0.00 0.00 39.30 2.73
2058 2551 7.521509 ACTTTGTGTTACTACAGCGATAATC 57.478 36.000 0.00 0.00 34.24 1.75
2104 2597 5.557576 TCATATTCATGGAGGGACTTCTG 57.442 43.478 0.00 0.00 41.55 3.02
2138 2631 7.419203 AGGGTTTTAATAGGCTTGGAAGTTAT 58.581 34.615 0.00 0.00 0.00 1.89
2178 2671 5.460419 GCCAAGTAGTTCACATCTCGATTAG 59.540 44.000 0.00 0.00 0.00 1.73
2191 2684 2.295885 TCGATTAGAGAGTTCGACCCC 58.704 52.381 0.00 0.00 37.01 4.95
2192 2685 1.002684 CGATTAGAGAGTTCGACCCCG 60.003 57.143 0.00 0.00 34.92 5.73
2193 2686 0.745468 ATTAGAGAGTTCGACCCCGC 59.255 55.000 0.00 0.00 35.37 6.13
2194 2687 0.609957 TTAGAGAGTTCGACCCCGCA 60.610 55.000 0.00 0.00 35.37 5.69
2195 2688 1.030488 TAGAGAGTTCGACCCCGCAG 61.030 60.000 0.00 0.00 35.37 5.18
2208 2701 4.413928 CGCAGGGGGACAAATTCA 57.586 55.556 0.00 0.00 0.00 2.57
2209 2702 2.183409 CGCAGGGGGACAAATTCAG 58.817 57.895 0.00 0.00 0.00 3.02
2210 2703 1.315257 CGCAGGGGGACAAATTCAGG 61.315 60.000 0.00 0.00 0.00 3.86
2211 2704 0.251787 GCAGGGGGACAAATTCAGGT 60.252 55.000 0.00 0.00 0.00 4.00
2212 2705 1.005450 GCAGGGGGACAAATTCAGGTA 59.995 52.381 0.00 0.00 0.00 3.08
2213 2706 2.358195 GCAGGGGGACAAATTCAGGTAT 60.358 50.000 0.00 0.00 0.00 2.73
2214 2707 3.881713 GCAGGGGGACAAATTCAGGTATT 60.882 47.826 0.00 0.00 0.00 1.89
2215 2708 4.352893 CAGGGGGACAAATTCAGGTATTT 58.647 43.478 0.00 0.00 0.00 1.40
2216 2709 4.402474 CAGGGGGACAAATTCAGGTATTTC 59.598 45.833 0.00 0.00 0.00 2.17
2217 2710 4.294970 AGGGGGACAAATTCAGGTATTTCT 59.705 41.667 0.00 0.00 0.00 2.52
2218 2711 4.645136 GGGGGACAAATTCAGGTATTTCTC 59.355 45.833 0.00 0.00 0.00 2.87
2219 2712 5.261216 GGGGACAAATTCAGGTATTTCTCA 58.739 41.667 0.00 0.00 0.00 3.27
2220 2713 5.125578 GGGGACAAATTCAGGTATTTCTCAC 59.874 44.000 0.00 0.00 0.00 3.51
2221 2714 5.163754 GGGACAAATTCAGGTATTTCTCACG 60.164 44.000 0.00 0.00 0.00 4.35
2222 2715 5.411669 GGACAAATTCAGGTATTTCTCACGT 59.588 40.000 0.00 0.00 0.00 4.49
2223 2716 6.072673 GGACAAATTCAGGTATTTCTCACGTT 60.073 38.462 0.00 0.00 0.00 3.99
2224 2717 7.272037 ACAAATTCAGGTATTTCTCACGTTT 57.728 32.000 0.00 0.00 0.00 3.60
2225 2718 7.360361 ACAAATTCAGGTATTTCTCACGTTTC 58.640 34.615 0.00 0.00 0.00 2.78
2226 2719 7.012894 ACAAATTCAGGTATTTCTCACGTTTCA 59.987 33.333 0.00 0.00 0.00 2.69
2227 2720 7.504924 AATTCAGGTATTTCTCACGTTTCAA 57.495 32.000 0.00 0.00 0.00 2.69
2228 2721 6.928979 TTCAGGTATTTCTCACGTTTCAAA 57.071 33.333 0.00 0.00 0.00 2.69
2229 2722 6.928979 TCAGGTATTTCTCACGTTTCAAAA 57.071 33.333 0.00 0.00 0.00 2.44
2230 2723 7.323049 TCAGGTATTTCTCACGTTTCAAAAA 57.677 32.000 0.00 0.00 0.00 1.94
2256 2749 8.970691 AAAAAGGTTCACATCTCGATTAAATG 57.029 30.769 0.00 0.00 0.00 2.32
2257 2750 6.683974 AAGGTTCACATCTCGATTAAATGG 57.316 37.500 0.00 0.00 0.00 3.16
2258 2751 5.989477 AGGTTCACATCTCGATTAAATGGA 58.011 37.500 0.00 0.00 0.00 3.41
2267 2760 4.335315 TCTCGATTAAATGGAATGTGCCAC 59.665 41.667 0.00 0.00 41.56 5.01
2305 2799 8.622948 ACAGAATACCTTAAAGTTCTTCTTGG 57.377 34.615 1.11 0.00 36.40 3.61
2306 2800 8.437575 ACAGAATACCTTAAAGTTCTTCTTGGA 58.562 33.333 0.00 0.00 36.40 3.53
2307 2801 9.284968 CAGAATACCTTAAAGTTCTTCTTGGAA 57.715 33.333 0.00 0.00 36.40 3.53
2308 2802 9.862149 AGAATACCTTAAAGTTCTTCTTGGAAA 57.138 29.630 0.00 0.00 36.40 3.13
2313 2807 8.758829 ACCTTAAAGTTCTTCTTGGAAAATTGT 58.241 29.630 0.00 0.00 36.40 2.71
2314 2808 9.599866 CCTTAAAGTTCTTCTTGGAAAATTGTT 57.400 29.630 0.00 0.00 36.40 2.83
2546 3041 6.226052 AGCGTTAATGATGATTGCAGAGATA 58.774 36.000 0.00 0.00 0.00 1.98
2814 3317 3.636679 TGAACTCCTCTCTGTCCATAGG 58.363 50.000 0.00 0.00 0.00 2.57
2953 3459 9.003658 CCAATATGTGATAAACTTGAGGTATCC 57.996 37.037 0.00 0.00 0.00 2.59
3002 3508 9.170734 CTTTTGTTTTATCTCTCCATGATCTCA 57.829 33.333 0.00 0.00 0.00 3.27
3101 3607 5.911280 CAGAATAAGTGAGCACTGTGTTTTG 59.089 40.000 9.86 2.46 41.58 2.44
3103 3609 1.392589 AGTGAGCACTGTGTTTTGGG 58.607 50.000 9.86 0.00 40.75 4.12
3437 3947 5.156804 TCTTTCGTTGCTTTTTCTCTGTC 57.843 39.130 0.00 0.00 0.00 3.51
3729 4241 9.607988 ACAATTGATTTCATGAATGCAACATAT 57.392 25.926 19.55 5.43 0.00 1.78
3853 4367 7.939782 TCAGATTGCTTTGTTCATGAACTTAA 58.060 30.769 32.57 25.02 41.67 1.85
3914 4428 4.634012 AACTGGTAAACTGTGATAGCCA 57.366 40.909 0.00 0.00 0.00 4.75
3948 4462 4.501071 TCCCTTTGTACTAAATCAGCGAC 58.499 43.478 0.00 0.00 0.00 5.19
3958 4472 9.244799 TGTACTAAATCAGCGACAACTAATATG 57.755 33.333 0.00 0.00 0.00 1.78
4066 4667 1.067425 TCCGCCGTGCATATGGTATAC 60.067 52.381 4.56 0.00 35.28 1.47
4408 5012 5.787380 CTTAAAGAAAGCTGGCCTTTTCAT 58.213 37.500 21.67 12.51 43.64 2.57
4429 5033 4.003584 TGGCTAGGACTTTACCTGGTAT 57.996 45.455 7.50 0.00 40.05 2.73
4486 5091 9.282247 CAGAATACTTATGAAATTTGTGCTCAC 57.718 33.333 0.00 0.00 0.00 3.51
4536 5141 9.710979 GCTGAATTATATAAAGCAACGTAAACA 57.289 29.630 11.21 0.00 34.01 2.83
4782 5387 6.037786 TCTTCAGAAATACCTTGTCATCGT 57.962 37.500 0.00 0.00 0.00 3.73
4798 5404 4.790140 GTCATCGTGATTTTCAAGTGATGC 59.210 41.667 9.20 0.00 35.01 3.91
4802 5408 5.451908 TCGTGATTTTCAAGTGATGCTTTC 58.548 37.500 0.00 0.00 34.69 2.62
4870 5476 7.654923 CGATCAATAGGGTAGTAAACTAAACCC 59.345 40.741 11.68 11.68 35.86 4.11
4879 5485 5.245584 AGTAAACTAAACCCAATTCCCGA 57.754 39.130 0.00 0.00 0.00 5.14
5156 5763 5.412594 ACATGAGTAAAAATGTCATCGCTGT 59.587 36.000 0.00 0.00 31.33 4.40
5170 5777 1.424493 CGCTGTGCTCTTTCCCGATC 61.424 60.000 0.00 0.00 0.00 3.69
5202 5809 1.134818 TGCTGCGTGGTTCGAATAGAT 60.135 47.619 0.00 0.00 42.86 1.98
5410 6017 0.807667 GTAGTGACAGATGGCTGCCG 60.808 60.000 14.98 1.58 46.26 5.69
5481 6103 1.667830 ACGCGCTAGCTTGAGCAAA 60.668 52.632 21.70 0.00 42.99 3.68
5539 8159 8.393959 AGAAACCTCCTGATTCTTATTCCTTA 57.606 34.615 0.00 0.00 29.35 2.69
5622 8247 5.692204 GTCATTCTATACCTGGTCATCAACG 59.308 44.000 0.63 0.00 0.00 4.10
5666 8462 1.304630 TGCCATGCAGCTTGGTCAT 60.305 52.632 24.51 0.00 36.57 3.06
5711 8507 1.802636 CACATTCGTGCCATGGACC 59.197 57.895 18.40 3.11 36.06 4.46
5712 8508 1.745115 ACATTCGTGCCATGGACCG 60.745 57.895 18.40 16.43 0.00 4.79
5713 8509 1.745115 CATTCGTGCCATGGACCGT 60.745 57.895 18.40 0.00 0.00 4.83
5714 8510 1.449601 ATTCGTGCCATGGACCGTC 60.450 57.895 18.40 0.00 0.00 4.79
5715 8511 2.178876 ATTCGTGCCATGGACCGTCA 62.179 55.000 18.40 8.09 0.00 4.35
5740 8536 3.741476 GCGCCCTCCACTTTGCTG 61.741 66.667 0.00 0.00 0.00 4.41
5741 8537 3.741476 CGCCCTCCACTTTGCTGC 61.741 66.667 0.00 0.00 0.00 5.25
5765 8901 2.434884 ATCGCCACAGCTTGTCCG 60.435 61.111 0.00 0.00 36.60 4.79
5802 8938 2.730672 GGTCACGTGCATCAGACGC 61.731 63.158 11.67 0.00 40.56 5.19
5814 8951 1.215382 CAGACGCGGATCAACTGGA 59.785 57.895 12.47 0.00 0.00 3.86
5845 8982 1.448893 TTCGCCGGTATGCCTTGAC 60.449 57.895 1.90 0.00 0.00 3.18
5934 9071 6.718454 AGGACAAACAAGTGAATGATTCTCAT 59.282 34.615 6.73 0.00 39.09 2.90
5941 9078 6.538021 ACAAGTGAATGATTCTCATACAGAGC 59.462 38.462 6.73 0.00 44.35 4.09
5943 9080 7.594351 AGTGAATGATTCTCATACAGAGCTA 57.406 36.000 6.73 0.00 44.35 3.32
5970 9107 4.373116 CAGCCGGGCACGTACACT 62.373 66.667 23.09 0.00 38.78 3.55
5971 9108 4.065281 AGCCGGGCACGTACACTC 62.065 66.667 23.09 0.00 38.78 3.51
5972 9109 4.367023 GCCGGGCACGTACACTCA 62.367 66.667 15.62 0.00 38.78 3.41
5973 9110 2.126071 CCGGGCACGTACACTCAG 60.126 66.667 7.97 0.00 38.78 3.35
5974 9111 2.126071 CGGGCACGTACACTCAGG 60.126 66.667 0.00 0.00 34.81 3.86
5975 9112 2.264794 GGGCACGTACACTCAGGG 59.735 66.667 0.00 0.00 0.00 4.45
5976 9113 2.434359 GGCACGTACACTCAGGGC 60.434 66.667 0.00 0.00 0.00 5.19
5977 9114 2.809601 GCACGTACACTCAGGGCG 60.810 66.667 0.00 0.00 0.00 6.13
5978 9115 2.649034 CACGTACACTCAGGGCGT 59.351 61.111 0.00 0.00 36.13 5.68
5979 9116 1.733041 CACGTACACTCAGGGCGTG 60.733 63.158 0.00 0.00 44.88 5.34
5980 9117 2.198287 ACGTACACTCAGGGCGTGT 61.198 57.895 7.12 4.15 46.45 4.49
5981 9118 1.443872 CGTACACTCAGGGCGTGTC 60.444 63.158 7.12 0.00 43.93 3.67
5982 9119 1.863662 CGTACACTCAGGGCGTGTCT 61.864 60.000 7.12 0.00 43.93 3.41
5983 9120 0.388649 GTACACTCAGGGCGTGTCTG 60.389 60.000 7.12 6.25 43.93 3.51
5984 9121 1.532604 TACACTCAGGGCGTGTCTGG 61.533 60.000 7.12 0.00 43.93 3.86
5985 9122 2.524394 ACTCAGGGCGTGTCTGGT 60.524 61.111 7.12 0.41 33.36 4.00
5986 9123 2.140792 ACTCAGGGCGTGTCTGGTT 61.141 57.895 7.12 0.00 33.36 3.67
5987 9124 1.669115 CTCAGGGCGTGTCTGGTTG 60.669 63.158 7.12 0.00 33.36 3.77
5988 9125 3.357079 CAGGGCGTGTCTGGTTGC 61.357 66.667 0.00 0.00 0.00 4.17
5989 9126 4.643387 AGGGCGTGTCTGGTTGCC 62.643 66.667 0.00 0.00 46.82 4.52
5992 9129 3.276846 GCGTGTCTGGTTGCCGTT 61.277 61.111 0.00 0.00 0.00 4.44
5993 9130 2.631428 CGTGTCTGGTTGCCGTTG 59.369 61.111 0.00 0.00 0.00 4.10
5994 9131 2.177580 CGTGTCTGGTTGCCGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
5995 9132 1.355210 GTGTCTGGTTGCCGTTGTG 59.645 57.895 0.00 0.00 0.00 3.33
5996 9133 1.092921 GTGTCTGGTTGCCGTTGTGA 61.093 55.000 0.00 0.00 0.00 3.58
5997 9134 0.393132 TGTCTGGTTGCCGTTGTGAA 60.393 50.000 0.00 0.00 0.00 3.18
5998 9135 0.028902 GTCTGGTTGCCGTTGTGAAC 59.971 55.000 0.00 0.00 0.00 3.18
5999 9136 0.393132 TCTGGTTGCCGTTGTGAACA 60.393 50.000 0.00 0.00 0.00 3.18
6000 9137 0.029300 CTGGTTGCCGTTGTGAACAG 59.971 55.000 0.00 0.00 0.00 3.16
6001 9138 0.678366 TGGTTGCCGTTGTGAACAGT 60.678 50.000 0.00 0.00 0.00 3.55
6002 9139 0.454196 GGTTGCCGTTGTGAACAGTT 59.546 50.000 0.00 0.00 0.00 3.16
6003 9140 1.533129 GGTTGCCGTTGTGAACAGTTC 60.533 52.381 6.32 6.32 0.00 3.01
6004 9141 0.736053 TTGCCGTTGTGAACAGTTCC 59.264 50.000 10.93 3.14 0.00 3.62
6005 9142 0.107410 TGCCGTTGTGAACAGTTCCT 60.107 50.000 10.93 0.00 0.00 3.36
6006 9143 0.307760 GCCGTTGTGAACAGTTCCTG 59.692 55.000 10.93 0.00 37.52 3.86
6007 9144 0.307760 CCGTTGTGAACAGTTCCTGC 59.692 55.000 10.93 2.23 34.37 4.85
6008 9145 1.013596 CGTTGTGAACAGTTCCTGCA 58.986 50.000 10.93 4.75 34.37 4.41
6009 9146 1.603802 CGTTGTGAACAGTTCCTGCAT 59.396 47.619 10.93 0.00 34.37 3.96
6010 9147 2.349817 CGTTGTGAACAGTTCCTGCATC 60.350 50.000 10.93 5.92 34.37 3.91
6011 9148 2.618241 GTTGTGAACAGTTCCTGCATCA 59.382 45.455 10.93 0.00 34.37 3.07
6012 9149 2.221169 TGTGAACAGTTCCTGCATCAC 58.779 47.619 10.93 17.24 44.51 3.06
6013 9150 2.221169 GTGAACAGTTCCTGCATCACA 58.779 47.619 18.35 0.00 44.10 3.58
6014 9151 2.816087 GTGAACAGTTCCTGCATCACAT 59.184 45.455 18.35 0.00 44.10 3.21
6015 9152 2.815503 TGAACAGTTCCTGCATCACATG 59.184 45.455 10.93 0.00 34.37 3.21
6027 9164 3.965292 CATCACATGCACTTCTCCATC 57.035 47.619 0.00 0.00 0.00 3.51
6028 9165 2.408271 TCACATGCACTTCTCCATCC 57.592 50.000 0.00 0.00 0.00 3.51
6029 9166 1.629861 TCACATGCACTTCTCCATCCA 59.370 47.619 0.00 0.00 0.00 3.41
6030 9167 2.014857 CACATGCACTTCTCCATCCAG 58.985 52.381 0.00 0.00 0.00 3.86
6031 9168 1.632409 ACATGCACTTCTCCATCCAGT 59.368 47.619 0.00 0.00 0.00 4.00
6032 9169 2.040813 ACATGCACTTCTCCATCCAGTT 59.959 45.455 0.00 0.00 0.00 3.16
6033 9170 2.957402 TGCACTTCTCCATCCAGTTT 57.043 45.000 0.00 0.00 0.00 2.66
6034 9171 2.507484 TGCACTTCTCCATCCAGTTTG 58.493 47.619 0.00 0.00 0.00 2.93
6035 9172 2.106338 TGCACTTCTCCATCCAGTTTGA 59.894 45.455 0.00 0.00 0.00 2.69
6036 9173 3.245016 TGCACTTCTCCATCCAGTTTGAT 60.245 43.478 0.00 0.00 0.00 2.57
6037 9174 3.760684 GCACTTCTCCATCCAGTTTGATT 59.239 43.478 0.00 0.00 0.00 2.57
6038 9175 4.380233 GCACTTCTCCATCCAGTTTGATTG 60.380 45.833 0.00 0.00 0.00 2.67
6039 9176 5.005740 CACTTCTCCATCCAGTTTGATTGA 58.994 41.667 0.00 0.00 0.00 2.57
6040 9177 5.123502 CACTTCTCCATCCAGTTTGATTGAG 59.876 44.000 0.00 0.00 36.40 3.02
6041 9178 3.614092 TCTCCATCCAGTTTGATTGAGC 58.386 45.455 0.00 0.00 35.53 4.26
6042 9179 3.009363 TCTCCATCCAGTTTGATTGAGCA 59.991 43.478 0.00 0.00 35.53 4.26
6043 9180 3.760151 CTCCATCCAGTTTGATTGAGCAA 59.240 43.478 0.00 0.00 30.58 3.91
6044 9181 4.151121 TCCATCCAGTTTGATTGAGCAAA 58.849 39.130 0.00 0.00 35.54 3.68
6045 9182 4.588106 TCCATCCAGTTTGATTGAGCAAAA 59.412 37.500 0.00 0.00 39.26 2.44
6046 9183 5.070180 TCCATCCAGTTTGATTGAGCAAAAA 59.930 36.000 0.00 0.00 39.26 1.94
6047 9184 5.178067 CCATCCAGTTTGATTGAGCAAAAAC 59.822 40.000 0.00 3.50 39.26 2.43
6048 9185 5.336150 TCCAGTTTGATTGAGCAAAAACA 57.664 34.783 11.09 0.76 39.26 2.83
6049 9186 5.350633 TCCAGTTTGATTGAGCAAAAACAG 58.649 37.500 11.09 5.25 39.26 3.16
6050 9187 4.508861 CCAGTTTGATTGAGCAAAAACAGG 59.491 41.667 11.09 9.15 39.26 4.00
6051 9188 4.025480 CAGTTTGATTGAGCAAAAACAGGC 60.025 41.667 11.09 0.00 39.26 4.85
6052 9189 2.818130 TGATTGAGCAAAAACAGGCC 57.182 45.000 0.00 0.00 0.00 5.19
6053 9190 1.344114 TGATTGAGCAAAAACAGGCCC 59.656 47.619 0.00 0.00 0.00 5.80
6054 9191 1.620323 GATTGAGCAAAAACAGGCCCT 59.380 47.619 0.00 0.00 0.00 5.19
6055 9192 2.373335 TTGAGCAAAAACAGGCCCTA 57.627 45.000 0.00 0.00 0.00 3.53
6056 9193 2.373335 TGAGCAAAAACAGGCCCTAA 57.627 45.000 0.00 0.00 0.00 2.69
6057 9194 2.888212 TGAGCAAAAACAGGCCCTAAT 58.112 42.857 0.00 0.00 0.00 1.73
6058 9195 4.040936 TGAGCAAAAACAGGCCCTAATA 57.959 40.909 0.00 0.00 0.00 0.98
6059 9196 3.761752 TGAGCAAAAACAGGCCCTAATAC 59.238 43.478 0.00 0.00 0.00 1.89
6060 9197 2.752903 AGCAAAAACAGGCCCTAATACG 59.247 45.455 0.00 0.00 0.00 3.06
6061 9198 2.734175 GCAAAAACAGGCCCTAATACGC 60.734 50.000 0.00 0.00 0.00 4.42
6062 9199 2.752903 CAAAAACAGGCCCTAATACGCT 59.247 45.455 0.00 0.00 0.00 5.07
6063 9200 3.918294 AAAACAGGCCCTAATACGCTA 57.082 42.857 0.00 0.00 0.00 4.26
6064 9201 4.432980 AAAACAGGCCCTAATACGCTAT 57.567 40.909 0.00 0.00 0.00 2.97
6065 9202 5.556006 AAAACAGGCCCTAATACGCTATA 57.444 39.130 0.00 0.00 0.00 1.31
6066 9203 5.757099 AAACAGGCCCTAATACGCTATAT 57.243 39.130 0.00 0.00 0.00 0.86
6067 9204 4.737855 ACAGGCCCTAATACGCTATATG 57.262 45.455 0.00 0.00 0.00 1.78
6068 9205 3.118738 ACAGGCCCTAATACGCTATATGC 60.119 47.826 0.00 0.00 38.57 3.14
6069 9206 3.104512 AGGCCCTAATACGCTATATGCA 58.895 45.455 0.00 0.00 43.06 3.96
6070 9207 3.517901 AGGCCCTAATACGCTATATGCAA 59.482 43.478 0.00 0.00 43.06 4.08
6071 9208 3.621715 GGCCCTAATACGCTATATGCAAC 59.378 47.826 0.00 0.00 43.06 4.17
6072 9209 4.504858 GCCCTAATACGCTATATGCAACT 58.495 43.478 0.00 0.00 43.06 3.16
6073 9210 4.935808 GCCCTAATACGCTATATGCAACTT 59.064 41.667 0.00 0.00 43.06 2.66
6074 9211 5.163854 GCCCTAATACGCTATATGCAACTTG 60.164 44.000 0.00 0.00 43.06 3.16
6075 9212 6.163476 CCCTAATACGCTATATGCAACTTGA 58.837 40.000 0.00 0.00 43.06 3.02
6076 9213 6.818644 CCCTAATACGCTATATGCAACTTGAT 59.181 38.462 0.00 0.00 43.06 2.57
6077 9214 7.334421 CCCTAATACGCTATATGCAACTTGATT 59.666 37.037 0.00 0.00 43.06 2.57
6078 9215 8.171196 CCTAATACGCTATATGCAACTTGATTG 58.829 37.037 0.00 0.00 43.06 2.67
6079 9216 4.818534 ACGCTATATGCAACTTGATTGG 57.181 40.909 0.00 0.00 43.06 3.16
6080 9217 4.199310 ACGCTATATGCAACTTGATTGGT 58.801 39.130 0.00 0.00 43.06 3.67
6081 9218 4.640201 ACGCTATATGCAACTTGATTGGTT 59.360 37.500 0.00 0.00 43.06 3.67
6082 9219 4.971830 CGCTATATGCAACTTGATTGGTTG 59.028 41.667 0.00 0.00 44.60 3.77
6087 9224 1.787012 CAACTTGATTGGTTGCCTGC 58.213 50.000 0.00 0.00 37.76 4.85
6088 9225 1.068895 CAACTTGATTGGTTGCCTGCA 59.931 47.619 0.00 0.00 37.76 4.41
6089 9226 1.636148 ACTTGATTGGTTGCCTGCAT 58.364 45.000 0.00 0.00 0.00 3.96
6090 9227 1.547372 ACTTGATTGGTTGCCTGCATC 59.453 47.619 0.00 0.00 0.00 3.91
6091 9228 0.896923 TTGATTGGTTGCCTGCATCC 59.103 50.000 11.47 11.47 36.58 3.51
6092 9229 0.971959 TGATTGGTTGCCTGCATCCC 60.972 55.000 14.87 8.63 35.51 3.85
6093 9230 0.685458 GATTGGTTGCCTGCATCCCT 60.685 55.000 14.87 4.44 35.51 4.20
6094 9231 0.630673 ATTGGTTGCCTGCATCCCTA 59.369 50.000 14.87 6.01 35.51 3.53
6095 9232 0.034186 TTGGTTGCCTGCATCCCTAG 60.034 55.000 14.87 0.00 35.51 3.02
6096 9233 1.207488 TGGTTGCCTGCATCCCTAGT 61.207 55.000 14.87 0.00 35.51 2.57
6097 9234 0.464554 GGTTGCCTGCATCCCTAGTC 60.465 60.000 7.83 0.00 31.44 2.59
6098 9235 0.464554 GTTGCCTGCATCCCTAGTCC 60.465 60.000 0.00 0.00 0.00 3.85
6099 9236 1.635817 TTGCCTGCATCCCTAGTCCC 61.636 60.000 0.00 0.00 0.00 4.46
6100 9237 1.768077 GCCTGCATCCCTAGTCCCT 60.768 63.158 0.00 0.00 0.00 4.20
6101 9238 2.049627 GCCTGCATCCCTAGTCCCTG 62.050 65.000 0.00 0.00 0.00 4.45
6102 9239 1.449353 CTGCATCCCTAGTCCCTGC 59.551 63.158 0.00 0.00 0.00 4.85
6103 9240 1.306911 TGCATCCCTAGTCCCTGCA 60.307 57.895 3.29 3.29 40.29 4.41
6104 9241 0.695462 TGCATCCCTAGTCCCTGCAT 60.695 55.000 0.00 0.00 37.88 3.96
6105 9242 0.475906 GCATCCCTAGTCCCTGCATT 59.524 55.000 0.00 0.00 33.13 3.56
6106 9243 1.699634 GCATCCCTAGTCCCTGCATTA 59.300 52.381 0.00 0.00 33.13 1.90
6107 9244 2.289945 GCATCCCTAGTCCCTGCATTAG 60.290 54.545 0.00 0.00 33.13 1.73
6108 9245 2.103153 TCCCTAGTCCCTGCATTAGG 57.897 55.000 0.00 0.00 46.88 2.69
6109 9246 1.294068 TCCCTAGTCCCTGCATTAGGT 59.706 52.381 0.00 0.00 45.80 3.08
6110 9247 2.520980 TCCCTAGTCCCTGCATTAGGTA 59.479 50.000 0.00 0.00 45.80 3.08
6111 9248 3.051650 TCCCTAGTCCCTGCATTAGGTAA 60.052 47.826 0.00 0.00 45.80 2.85
6112 9249 3.910627 CCCTAGTCCCTGCATTAGGTAAT 59.089 47.826 0.00 0.00 45.80 1.89
6113 9250 5.091552 CCCTAGTCCCTGCATTAGGTAATA 58.908 45.833 0.00 0.00 45.80 0.98
6114 9251 5.046520 CCCTAGTCCCTGCATTAGGTAATAC 60.047 48.000 0.00 0.00 45.80 1.89
6115 9252 4.602340 AGTCCCTGCATTAGGTAATACG 57.398 45.455 0.00 0.00 45.80 3.06
6116 9253 3.064931 GTCCCTGCATTAGGTAATACGC 58.935 50.000 0.00 0.00 45.80 4.42
6117 9254 2.701423 TCCCTGCATTAGGTAATACGCA 59.299 45.455 0.00 0.00 45.80 5.24
6118 9255 3.134985 TCCCTGCATTAGGTAATACGCAA 59.865 43.478 0.00 0.00 45.80 4.85
6119 9256 3.498397 CCCTGCATTAGGTAATACGCAAG 59.502 47.826 0.00 0.00 45.80 4.01
6121 9258 4.024893 CCTGCATTAGGTAATACGCAAGTG 60.025 45.833 0.00 0.00 46.95 3.16
6122 9259 7.479431 CCTGCATTAGGTAATACGCAAGTGC 62.479 48.000 0.00 0.00 46.95 4.40
6133 9270 2.649140 CGCAAGTGCATTTTGTTTGG 57.351 45.000 13.36 0.00 42.21 3.28
6134 9271 1.932511 CGCAAGTGCATTTTGTTTGGT 59.067 42.857 13.36 0.00 42.21 3.67
6135 9272 2.351111 CGCAAGTGCATTTTGTTTGGTT 59.649 40.909 13.36 0.00 42.21 3.67
6136 9273 3.682921 GCAAGTGCATTTTGTTTGGTTG 58.317 40.909 13.36 0.00 41.59 3.77
6137 9274 3.487209 GCAAGTGCATTTTGTTTGGTTGG 60.487 43.478 13.36 0.00 41.59 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.815581 ACTAATCACACACACCACCATAAT 58.184 37.500 0.00 0.00 0.00 1.28
146 148 5.675970 CGACACGTCTAACAACATTTCATT 58.324 37.500 0.00 0.00 0.00 2.57
183 211 5.619533 CGTCCCTTCTCTTTACACTACTCAC 60.620 48.000 0.00 0.00 0.00 3.51
226 255 6.498538 TCTTTTCATCTTCTCCTCTACCTCT 58.501 40.000 0.00 0.00 0.00 3.69
261 290 7.292319 TGTGTCTCATCAATATTGGAATCCAT 58.708 34.615 15.36 0.00 31.53 3.41
263 292 6.769822 ACTGTGTCTCATCAATATTGGAATCC 59.230 38.462 15.36 0.00 0.00 3.01
283 312 3.621268 TGTTCCTTTCTCGTTTGACTGTG 59.379 43.478 0.00 0.00 0.00 3.66
285 314 3.621268 TGTGTTCCTTTCTCGTTTGACTG 59.379 43.478 0.00 0.00 0.00 3.51
299 328 7.633193 TTTTGTGTTATGTACTTGTGTTCCT 57.367 32.000 0.00 0.00 0.00 3.36
421 450 6.956520 GTGAACTAAAAGAAAGAGCTTATCGC 59.043 38.462 0.00 0.00 39.57 4.58
428 457 5.527582 TCTGGTGTGAACTAAAAGAAAGAGC 59.472 40.000 0.00 0.00 0.00 4.09
446 476 5.880054 ACGGTTATTTCATTCTTCTGGTG 57.120 39.130 0.00 0.00 0.00 4.17
470 504 5.456042 CCACCACCAATGCCTACATCTAATA 60.456 44.000 0.00 0.00 34.62 0.98
476 510 0.704076 ACCACCACCAATGCCTACAT 59.296 50.000 0.00 0.00 38.49 2.29
477 511 0.251121 CACCACCACCAATGCCTACA 60.251 55.000 0.00 0.00 0.00 2.74
519 553 3.857549 TTCATCGACTTCTCCTCTGTG 57.142 47.619 0.00 0.00 0.00 3.66
564 598 4.010667 TGGCACGAACCTGTAGTAAATT 57.989 40.909 0.00 0.00 0.00 1.82
565 599 3.688694 TGGCACGAACCTGTAGTAAAT 57.311 42.857 0.00 0.00 0.00 1.40
572 606 2.236146 TCAGAATATGGCACGAACCTGT 59.764 45.455 0.00 0.00 0.00 4.00
607 641 8.767085 ACATCAAACAGATTTTAAAAGCACATG 58.233 29.630 17.74 10.04 33.72 3.21
610 644 8.063630 CCAACATCAAACAGATTTTAAAAGCAC 58.936 33.333 17.74 6.69 33.72 4.40
652 688 7.303182 TCAGACGGATGGAGTATTATTGATT 57.697 36.000 0.00 0.00 0.00 2.57
679 715 9.533831 AGATACATTTATTTGAGGGACAAGTTT 57.466 29.630 0.00 0.00 39.77 2.66
683 719 9.967451 TGTTAGATACATTTATTTGAGGGACAA 57.033 29.630 0.00 0.00 36.65 3.18
684 720 9.391006 GTGTTAGATACATTTATTTGAGGGACA 57.609 33.333 0.00 0.00 39.39 4.02
685 721 9.391006 TGTGTTAGATACATTTATTTGAGGGAC 57.609 33.333 0.00 0.00 39.39 4.46
686 722 9.967451 TTGTGTTAGATACATTTATTTGAGGGA 57.033 29.630 0.00 0.00 39.39 4.20
724 870 9.599322 GAATACAAAGCTATTGGATTATCAACG 57.401 33.333 14.98 0.00 33.37 4.10
725 871 9.599322 CGAATACAAAGCTATTGGATTATCAAC 57.401 33.333 14.98 5.97 33.37 3.18
726 872 9.554395 TCGAATACAAAGCTATTGGATTATCAA 57.446 29.630 14.98 3.91 33.37 2.57
727 873 8.988934 GTCGAATACAAAGCTATTGGATTATCA 58.011 33.333 14.98 4.47 33.37 2.15
728 874 9.209175 AGTCGAATACAAAGCTATTGGATTATC 57.791 33.333 14.98 10.37 33.37 1.75
729 875 9.209175 GAGTCGAATACAAAGCTATTGGATTAT 57.791 33.333 14.98 6.18 33.37 1.28
730 876 8.201464 TGAGTCGAATACAAAGCTATTGGATTA 58.799 33.333 14.98 3.44 33.37 1.75
731 877 7.047891 TGAGTCGAATACAAAGCTATTGGATT 58.952 34.615 14.94 14.94 35.76 3.01
732 878 6.582636 TGAGTCGAATACAAAGCTATTGGAT 58.417 36.000 11.59 6.95 0.00 3.41
734 880 6.662414 TTGAGTCGAATACAAAGCTATTGG 57.338 37.500 11.59 0.00 0.00 3.16
770 1015 6.910433 TGCTCTTTGTTTCTTTCGTTGATTAC 59.090 34.615 0.00 0.00 0.00 1.89
803 1048 1.909302 TCTTACTGCTCTTCCCTTGGG 59.091 52.381 0.00 0.00 0.00 4.12
804 1049 2.834549 TCTCTTACTGCTCTTCCCTTGG 59.165 50.000 0.00 0.00 0.00 3.61
805 1050 3.678529 GCTCTCTTACTGCTCTTCCCTTG 60.679 52.174 0.00 0.00 0.00 3.61
807 1052 2.107366 GCTCTCTTACTGCTCTTCCCT 58.893 52.381 0.00 0.00 0.00 4.20
808 1053 1.138069 GGCTCTCTTACTGCTCTTCCC 59.862 57.143 0.00 0.00 0.00 3.97
809 1054 1.827969 TGGCTCTCTTACTGCTCTTCC 59.172 52.381 0.00 0.00 0.00 3.46
810 1055 3.194542 TCTTGGCTCTCTTACTGCTCTTC 59.805 47.826 0.00 0.00 0.00 2.87
811 1056 3.169099 TCTTGGCTCTCTTACTGCTCTT 58.831 45.455 0.00 0.00 0.00 2.85
813 1058 2.757868 TCTCTTGGCTCTCTTACTGCTC 59.242 50.000 0.00 0.00 0.00 4.26
814 1059 2.813907 TCTCTTGGCTCTCTTACTGCT 58.186 47.619 0.00 0.00 0.00 4.24
815 1060 3.194542 TCTTCTCTTGGCTCTCTTACTGC 59.805 47.826 0.00 0.00 0.00 4.40
816 1061 5.167845 GTTCTTCTCTTGGCTCTCTTACTG 58.832 45.833 0.00 0.00 0.00 2.74
817 1062 4.835615 TGTTCTTCTCTTGGCTCTCTTACT 59.164 41.667 0.00 0.00 0.00 2.24
818 1063 5.047660 TCTGTTCTTCTCTTGGCTCTCTTAC 60.048 44.000 0.00 0.00 0.00 2.34
819 1064 5.047660 GTCTGTTCTTCTCTTGGCTCTCTTA 60.048 44.000 0.00 0.00 0.00 2.10
822 1067 3.006323 TGTCTGTTCTTCTCTTGGCTCTC 59.994 47.826 0.00 0.00 0.00 3.20
823 1068 2.968574 TGTCTGTTCTTCTCTTGGCTCT 59.031 45.455 0.00 0.00 0.00 4.09
824 1069 3.244044 ACTGTCTGTTCTTCTCTTGGCTC 60.244 47.826 0.00 0.00 0.00 4.70
826 1071 3.118905 ACTGTCTGTTCTTCTCTTGGC 57.881 47.619 0.00 0.00 0.00 4.52
827 1072 6.279513 AGATACTGTCTGTTCTTCTCTTGG 57.720 41.667 0.00 0.00 35.31 3.61
828 1073 6.090628 GCAAGATACTGTCTGTTCTTCTCTTG 59.909 42.308 0.00 0.00 39.82 3.02
830 1075 5.244851 TGCAAGATACTGTCTGTTCTTCTCT 59.755 40.000 0.00 0.00 37.23 3.10
831 1076 5.473931 TGCAAGATACTGTCTGTTCTTCTC 58.526 41.667 0.00 0.00 37.23 2.87
832 1077 5.011533 ACTGCAAGATACTGTCTGTTCTTCT 59.988 40.000 0.00 0.00 37.23 2.85
833 1078 5.233988 ACTGCAAGATACTGTCTGTTCTTC 58.766 41.667 0.00 0.00 37.23 2.87
835 1080 4.881019 ACTGCAAGATACTGTCTGTTCT 57.119 40.909 0.00 0.00 37.23 3.01
836 1081 5.715070 AGTACTGCAAGATACTGTCTGTTC 58.285 41.667 0.00 0.00 37.23 3.18
848 1114 1.002430 CCTGGCAAGAGTACTGCAAGA 59.998 52.381 10.74 0.00 37.43 3.02
879 1344 0.738975 CGGCCACGATCTGTTCTAGA 59.261 55.000 2.24 0.00 44.60 2.43
908 1376 1.646912 TTACCTGGACCCGTTCATCA 58.353 50.000 0.00 0.00 0.00 3.07
1076 1544 3.311110 GGATAGGCCGGGATGCGA 61.311 66.667 2.18 0.00 0.00 5.10
1193 1661 1.153229 GACGGGGTTCCAGTATGCC 60.153 63.158 0.00 0.00 31.97 4.40
1358 1832 4.772100 CCCTGTAACCAAAACCATCAATCT 59.228 41.667 0.00 0.00 0.00 2.40
1367 1841 3.782656 TCTCCTCCCTGTAACCAAAAC 57.217 47.619 0.00 0.00 0.00 2.43
1370 1844 2.637872 CACTTCTCCTCCCTGTAACCAA 59.362 50.000 0.00 0.00 0.00 3.67
1373 1847 4.353383 AAACACTTCTCCTCCCTGTAAC 57.647 45.455 0.00 0.00 0.00 2.50
1502 1990 3.367087 CCACTAGTTCCACTGTACTTCGG 60.367 52.174 0.00 0.00 0.00 4.30
1503 1991 3.255149 ACCACTAGTTCCACTGTACTTCG 59.745 47.826 0.00 0.00 0.00 3.79
1529 2017 2.536365 TCAATTACATCGTCGCCAGTC 58.464 47.619 0.00 0.00 0.00 3.51
1530 2018 2.665649 TCAATTACATCGTCGCCAGT 57.334 45.000 0.00 0.00 0.00 4.00
1531 2019 4.686091 ACATATCAATTACATCGTCGCCAG 59.314 41.667 0.00 0.00 0.00 4.85
1532 2020 4.627058 ACATATCAATTACATCGTCGCCA 58.373 39.130 0.00 0.00 0.00 5.69
1533 2021 5.591643 AACATATCAATTACATCGTCGCC 57.408 39.130 0.00 0.00 0.00 5.54
1576 2064 6.036083 CAGATAATGTTTGTGAACTACTCCCG 59.964 42.308 0.00 0.00 36.70 5.14
1777 2267 7.162761 TGTCGAATTCCAGGTAATTCAGTTAA 58.837 34.615 17.57 3.64 43.18 2.01
1822 2312 7.757526 TGGGTTCACTAATGATTTGATTTACG 58.242 34.615 0.00 0.00 33.85 3.18
1839 2329 2.300437 ACTAGCTTGTCTCTGGGTTCAC 59.700 50.000 0.00 0.00 0.00 3.18
1858 2348 9.594038 CGCGCATTATTGTTTATAAGAAATACT 57.406 29.630 8.75 0.00 32.40 2.12
1859 2349 9.377383 ACGCGCATTATTGTTTATAAGAAATAC 57.623 29.630 5.73 0.00 32.40 1.89
1860 2350 9.376171 CACGCGCATTATTGTTTATAAGAAATA 57.624 29.630 5.73 0.00 32.40 1.40
1861 2351 8.126074 TCACGCGCATTATTGTTTATAAGAAAT 58.874 29.630 5.73 1.69 32.40 2.17
1862 2352 7.427030 GTCACGCGCATTATTGTTTATAAGAAA 59.573 33.333 5.73 0.00 32.40 2.52
1863 2353 6.902948 GTCACGCGCATTATTGTTTATAAGAA 59.097 34.615 5.73 0.00 32.40 2.52
1864 2354 6.415702 GTCACGCGCATTATTGTTTATAAGA 58.584 36.000 5.73 0.00 32.40 2.10
1865 2355 5.619607 GGTCACGCGCATTATTGTTTATAAG 59.380 40.000 5.73 0.00 32.40 1.73
1866 2356 5.503498 GGTCACGCGCATTATTGTTTATAA 58.497 37.500 5.73 0.00 33.39 0.98
1867 2357 4.318192 CGGTCACGCGCATTATTGTTTATA 60.318 41.667 5.73 0.00 0.00 0.98
1868 2358 3.545228 CGGTCACGCGCATTATTGTTTAT 60.545 43.478 5.73 0.00 0.00 1.40
1869 2359 2.222841 CGGTCACGCGCATTATTGTTTA 60.223 45.455 5.73 0.00 0.00 2.01
1870 2360 1.465020 CGGTCACGCGCATTATTGTTT 60.465 47.619 5.73 0.00 0.00 2.83
1871 2361 0.096281 CGGTCACGCGCATTATTGTT 59.904 50.000 5.73 0.00 0.00 2.83
1872 2362 0.738063 TCGGTCACGCGCATTATTGT 60.738 50.000 5.73 0.00 40.69 2.71
1873 2363 0.043053 CTCGGTCACGCGCATTATTG 60.043 55.000 5.73 0.00 40.69 1.90
1874 2364 0.179121 TCTCGGTCACGCGCATTATT 60.179 50.000 5.73 0.00 40.69 1.40
1875 2365 0.032130 ATCTCGGTCACGCGCATTAT 59.968 50.000 5.73 0.00 40.69 1.28
1876 2366 0.664224 TATCTCGGTCACGCGCATTA 59.336 50.000 5.73 0.00 40.69 1.90
1877 2367 0.179121 TTATCTCGGTCACGCGCATT 60.179 50.000 5.73 0.00 40.69 3.56
1878 2368 0.870307 GTTATCTCGGTCACGCGCAT 60.870 55.000 5.73 0.00 40.69 4.73
1879 2369 1.515519 GTTATCTCGGTCACGCGCA 60.516 57.895 5.73 0.00 40.69 6.09
1901 2391 4.159135 AGAACCTTCATGGAATTGCATGAC 59.841 41.667 34.07 24.15 37.53 3.06
1967 2457 7.872138 AGTACCCATCATTTCAAATAAGAGGA 58.128 34.615 0.00 0.00 0.00 3.71
1994 2484 8.993121 CATTTCACTTAGTAATCAACAGACTGT 58.007 33.333 1.07 1.07 0.00 3.55
2048 2541 6.898912 ATGCATATGTACAGATTATCGCTG 57.101 37.500 0.00 0.00 39.26 5.18
2081 2574 5.429762 ACAGAAGTCCCTCCATGAATATGAA 59.570 40.000 0.00 0.00 36.36 2.57
2088 2581 3.515502 CACTTACAGAAGTCCCTCCATGA 59.484 47.826 0.00 0.00 44.39 3.07
2104 2597 6.178324 AGCCTATTAAAACCCTCACACTTAC 58.822 40.000 0.00 0.00 0.00 2.34
2138 2631 5.957771 ACTTGGCTGAACTATCCATTAGA 57.042 39.130 0.00 0.00 0.00 2.10
2154 2647 3.232213 TCGAGATGTGAACTACTTGGC 57.768 47.619 0.00 0.00 0.00 4.52
2178 2671 2.182030 CTGCGGGGTCGAACTCTC 59.818 66.667 0.00 0.00 39.00 3.20
2190 2683 1.304052 TGAATTTGTCCCCCTGCGG 60.304 57.895 0.00 0.00 0.00 5.69
2191 2684 1.315257 CCTGAATTTGTCCCCCTGCG 61.315 60.000 0.00 0.00 0.00 5.18
2192 2685 0.251787 ACCTGAATTTGTCCCCCTGC 60.252 55.000 0.00 0.00 0.00 4.85
2193 2686 3.669939 ATACCTGAATTTGTCCCCCTG 57.330 47.619 0.00 0.00 0.00 4.45
2194 2687 4.294970 AGAAATACCTGAATTTGTCCCCCT 59.705 41.667 0.00 0.00 0.00 4.79
2195 2688 4.610333 AGAAATACCTGAATTTGTCCCCC 58.390 43.478 0.00 0.00 0.00 5.40
2196 2689 5.125578 GTGAGAAATACCTGAATTTGTCCCC 59.874 44.000 4.61 0.00 37.99 4.81
2197 2690 5.163754 CGTGAGAAATACCTGAATTTGTCCC 60.164 44.000 4.61 0.00 37.99 4.46
2198 2691 5.411669 ACGTGAGAAATACCTGAATTTGTCC 59.588 40.000 0.00 0.00 37.99 4.02
2199 2692 6.481954 ACGTGAGAAATACCTGAATTTGTC 57.518 37.500 0.00 0.00 38.78 3.18
2200 2693 6.877611 AACGTGAGAAATACCTGAATTTGT 57.122 33.333 0.00 0.00 0.00 2.83
2201 2694 7.359595 TGAAACGTGAGAAATACCTGAATTTG 58.640 34.615 0.00 0.00 0.00 2.32
2202 2695 7.504924 TGAAACGTGAGAAATACCTGAATTT 57.495 32.000 0.00 0.00 0.00 1.82
2203 2696 7.504924 TTGAAACGTGAGAAATACCTGAATT 57.495 32.000 0.00 0.00 0.00 2.17
2204 2697 7.504924 TTTGAAACGTGAGAAATACCTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
2205 2698 6.928979 TTTGAAACGTGAGAAATACCTGAA 57.071 33.333 0.00 0.00 0.00 3.02
2206 2699 6.928979 TTTTGAAACGTGAGAAATACCTGA 57.071 33.333 0.00 0.00 0.00 3.86
2231 2724 8.028938 CCATTTAATCGAGATGTGAACCTTTTT 58.971 33.333 0.00 0.00 0.00 1.94
2232 2725 7.393234 TCCATTTAATCGAGATGTGAACCTTTT 59.607 33.333 0.00 0.00 0.00 2.27
2233 2726 6.884295 TCCATTTAATCGAGATGTGAACCTTT 59.116 34.615 0.00 0.00 0.00 3.11
2234 2727 6.414732 TCCATTTAATCGAGATGTGAACCTT 58.585 36.000 0.00 0.00 0.00 3.50
2235 2728 5.989477 TCCATTTAATCGAGATGTGAACCT 58.011 37.500 0.00 0.00 0.00 3.50
2236 2729 6.677781 TTCCATTTAATCGAGATGTGAACC 57.322 37.500 0.00 0.00 0.00 3.62
2237 2730 7.641411 CACATTCCATTTAATCGAGATGTGAAC 59.359 37.037 15.20 0.00 38.22 3.18
2238 2731 7.679400 GCACATTCCATTTAATCGAGATGTGAA 60.679 37.037 19.92 7.62 38.22 3.18
2239 2732 6.238456 GCACATTCCATTTAATCGAGATGTGA 60.238 38.462 19.92 1.06 38.22 3.58
2240 2733 5.911280 GCACATTCCATTTAATCGAGATGTG 59.089 40.000 15.60 15.60 38.77 3.21
2241 2734 5.009010 GGCACATTCCATTTAATCGAGATGT 59.991 40.000 0.00 0.00 0.00 3.06
2242 2735 5.008911 TGGCACATTCCATTTAATCGAGATG 59.991 40.000 0.00 0.00 0.00 2.90
2243 2736 5.009010 GTGGCACATTCCATTTAATCGAGAT 59.991 40.000 13.86 0.00 44.52 2.75
2244 2737 4.335315 GTGGCACATTCCATTTAATCGAGA 59.665 41.667 13.86 0.00 44.52 4.04
2245 2738 4.096231 TGTGGCACATTCCATTTAATCGAG 59.904 41.667 17.96 0.00 44.52 4.04
2246 2739 4.013050 TGTGGCACATTCCATTTAATCGA 58.987 39.130 17.96 0.00 44.52 3.59
2247 2740 4.096231 TCTGTGGCACATTCCATTTAATCG 59.904 41.667 22.35 4.52 44.52 3.34
2248 2741 5.581126 TCTGTGGCACATTCCATTTAATC 57.419 39.130 22.35 0.00 44.52 1.75
2249 2742 5.999205 TTCTGTGGCACATTCCATTTAAT 57.001 34.783 22.35 0.00 44.52 1.40
2250 2743 5.782047 CTTTCTGTGGCACATTCCATTTAA 58.218 37.500 22.35 5.87 44.52 1.52
2251 2744 4.321899 GCTTTCTGTGGCACATTCCATTTA 60.322 41.667 22.35 0.00 44.52 1.40
2252 2745 3.555586 GCTTTCTGTGGCACATTCCATTT 60.556 43.478 22.35 0.00 44.52 2.32
2253 2746 2.028748 GCTTTCTGTGGCACATTCCATT 60.029 45.455 22.35 0.00 44.52 3.16
2254 2747 1.547372 GCTTTCTGTGGCACATTCCAT 59.453 47.619 22.35 0.00 44.52 3.41
2255 2748 0.961019 GCTTTCTGTGGCACATTCCA 59.039 50.000 22.35 4.83 44.52 3.53
2256 2749 0.961019 TGCTTTCTGTGGCACATTCC 59.039 50.000 22.35 8.65 44.52 3.01
2257 2750 3.308438 AATGCTTTCTGTGGCACATTC 57.692 42.857 22.35 8.99 44.52 2.67
2258 2751 3.756933 AAATGCTTTCTGTGGCACATT 57.243 38.095 22.35 7.71 44.52 2.71
2546 3041 1.895131 ACCAGCTTTGCGGAAATGAAT 59.105 42.857 1.45 0.00 0.00 2.57
2605 3103 8.362639 AGACAATCATTTTGAAGTAGCACATTT 58.637 29.630 0.00 0.00 0.00 2.32
2669 3167 8.873144 AGAGGTACAGTGGTAAAGTAATTTACA 58.127 33.333 22.97 9.92 38.73 2.41
2781 3282 1.980765 AGGAGTTCATGGCTTCAGACA 59.019 47.619 0.00 0.00 37.54 3.41
2814 3317 3.956199 TGGGCAATCTTCAGGATCAAATC 59.044 43.478 0.00 0.00 32.76 2.17
2953 3459 7.961325 AGCATAAAAAGTAACCAAACCAATG 57.039 32.000 0.00 0.00 0.00 2.82
3002 3508 2.217038 ACCACCCTGCACGAGACAT 61.217 57.895 0.00 0.00 0.00 3.06
3103 3609 9.650371 GGCTGAAATAAAAACAAATGAAAGAAC 57.350 29.630 0.00 0.00 0.00 3.01
3437 3947 7.364522 AGTATTGTAACAACTGTGCTACATG 57.635 36.000 0.00 0.00 36.46 3.21
3483 3993 4.018490 TCCAGAGCGTACTAAACATACCA 58.982 43.478 0.00 0.00 0.00 3.25
3634 4146 9.590451 TTCCTTATTTGTTATACGAGTAACAGG 57.410 33.333 13.87 12.11 43.27 4.00
3729 4241 6.894339 TCCAGATTAGACTGCATTATCGTA 57.106 37.500 0.00 0.00 36.67 3.43
3788 4301 9.729281 AATGTGAAAGATGCAATTAGGAATTTT 57.271 25.926 0.00 0.00 0.00 1.82
3828 4342 6.395426 AAGTTCATGAACAAAGCAATCTGA 57.605 33.333 33.92 0.00 43.47 3.27
3891 4405 6.116711 TGGCTATCACAGTTTACCAGTTTA 57.883 37.500 0.00 0.00 0.00 2.01
3938 4452 6.238103 CGTTCCATATTAGTTGTCGCTGATTT 60.238 38.462 0.00 0.00 0.00 2.17
3948 4462 7.490000 AGAACTACTCCGTTCCATATTAGTTG 58.510 38.462 0.00 0.00 43.27 3.16
3958 4472 8.992835 TTAAGATAAAAGAACTACTCCGTTCC 57.007 34.615 0.00 0.00 43.27 3.62
4026 4627 5.221263 GCGGAGTTCCTATCACATTAAGAGA 60.221 44.000 0.00 0.00 0.00 3.10
4066 4667 6.348073 ATGCTTAGAGGATCAGCAGTAGCG 62.348 50.000 10.10 0.00 45.58 4.26
4400 5004 4.640647 GGTAAAGTCCTAGCCATGAAAAGG 59.359 45.833 0.00 0.00 0.00 3.11
4408 5012 2.337359 ACCAGGTAAAGTCCTAGCCA 57.663 50.000 0.00 0.00 35.87 4.75
4435 5039 7.775093 TGTGAGATAAGAATTGAACATAAGGGG 59.225 37.037 0.00 0.00 0.00 4.79
4436 5040 8.737168 TGTGAGATAAGAATTGAACATAAGGG 57.263 34.615 0.00 0.00 0.00 3.95
4437 5041 9.605275 TCTGTGAGATAAGAATTGAACATAAGG 57.395 33.333 0.00 0.00 0.00 2.69
4486 5091 6.477033 GCTACTGAACACTGTCATATACCAAG 59.523 42.308 0.00 0.00 0.00 3.61
4595 5200 9.981114 CCCTGAATTTACAAAATGAAGTAGTTT 57.019 29.630 0.00 0.00 0.00 2.66
4601 5206 8.359642 TCTTGTCCCTGAATTTACAAAATGAAG 58.640 33.333 0.00 0.00 31.90 3.02
4782 5387 7.281040 AGAAGAAAGCATCACTTGAAAATCA 57.719 32.000 0.00 0.00 39.09 2.57
5156 5763 1.339055 CCTGTTGATCGGGAAAGAGCA 60.339 52.381 0.00 0.00 45.09 4.26
5191 5798 6.422100 TGCAGCTATGAAAGATCTATTCGAAC 59.578 38.462 0.00 0.00 0.00 3.95
5202 5809 3.920231 ACAGGATGCAGCTATGAAAGA 57.080 42.857 13.36 0.00 42.53 2.52
5462 6084 1.900585 TTTGCTCAAGCTAGCGCGTG 61.901 55.000 9.55 9.31 45.85 5.34
5504 8122 0.034896 GGAGGTTTCTCTCGCCACAA 59.965 55.000 0.00 0.00 39.86 3.33
5593 8217 4.280929 TGACCAGGTATAGAATGACCGATG 59.719 45.833 0.00 0.00 40.91 3.84
5595 8219 3.905968 TGACCAGGTATAGAATGACCGA 58.094 45.455 0.00 0.00 40.91 4.69
5596 8220 4.280929 TGATGACCAGGTATAGAATGACCG 59.719 45.833 0.00 0.00 40.91 4.79
5622 8247 6.679884 GCGTAGTATATAATCCTACACAGGGC 60.680 46.154 8.79 2.18 42.87 5.19
5666 8462 2.829384 GGCTGGGGTCTGGTGTTGA 61.829 63.158 0.00 0.00 0.00 3.18
5699 8495 1.305219 AATTGACGGTCCATGGCACG 61.305 55.000 21.40 21.40 0.00 5.34
5711 8507 2.202298 GGGCGCGTTCAATTGACG 60.202 61.111 19.48 19.48 0.00 4.35
5712 8508 1.134694 GAGGGCGCGTTCAATTGAC 59.865 57.895 7.89 2.92 0.00 3.18
5713 8509 2.038269 GGAGGGCGCGTTCAATTGA 61.038 57.895 8.43 3.38 0.00 2.57
5714 8510 2.331893 TGGAGGGCGCGTTCAATTG 61.332 57.895 8.43 0.00 0.00 2.32
5715 8511 2.033448 TGGAGGGCGCGTTCAATT 59.967 55.556 8.43 0.00 0.00 2.32
5792 8928 0.807667 AGTTGATCCGCGTCTGATGC 60.808 55.000 11.81 11.81 0.00 3.91
5794 8930 0.179100 CCAGTTGATCCGCGTCTGAT 60.179 55.000 4.92 0.00 0.00 2.90
5802 8938 1.450312 GTGGGCTCCAGTTGATCCG 60.450 63.158 0.00 0.00 32.34 4.18
5814 8951 2.659610 GCGAACAGAGAGTGGGCT 59.340 61.111 0.00 0.00 0.00 5.19
5858 8995 4.945543 CCAACATCTTTCCATCATCTGTCA 59.054 41.667 0.00 0.00 0.00 3.58
5862 8999 5.183530 TGTCCAACATCTTTCCATCATCT 57.816 39.130 0.00 0.00 0.00 2.90
5905 9042 3.807622 TCATTCACTTGTTTGTCCTCGAC 59.192 43.478 0.00 0.00 0.00 4.20
5934 9071 3.690139 GCTGCTCGGTATATAGCTCTGTA 59.310 47.826 10.08 0.00 39.53 2.74
5970 9107 2.425592 CAACCAGACACGCCCTGA 59.574 61.111 0.00 0.00 33.65 3.86
5971 9108 3.357079 GCAACCAGACACGCCCTG 61.357 66.667 0.00 0.00 0.00 4.45
5972 9109 4.643387 GGCAACCAGACACGCCCT 62.643 66.667 0.00 0.00 38.67 5.19
5975 9112 3.276846 AACGGCAACCAGACACGC 61.277 61.111 0.00 0.00 0.00 5.34
5976 9113 2.177580 ACAACGGCAACCAGACACG 61.178 57.895 0.00 0.00 0.00 4.49
5977 9114 1.092921 TCACAACGGCAACCAGACAC 61.093 55.000 0.00 0.00 0.00 3.67
5978 9115 0.393132 TTCACAACGGCAACCAGACA 60.393 50.000 0.00 0.00 0.00 3.41
5979 9116 0.028902 GTTCACAACGGCAACCAGAC 59.971 55.000 0.00 0.00 0.00 3.51
5980 9117 0.393132 TGTTCACAACGGCAACCAGA 60.393 50.000 0.00 0.00 0.00 3.86
5981 9118 0.029300 CTGTTCACAACGGCAACCAG 59.971 55.000 0.00 0.00 0.00 4.00
5982 9119 0.678366 ACTGTTCACAACGGCAACCA 60.678 50.000 0.00 0.00 41.56 3.67
5983 9120 0.454196 AACTGTTCACAACGGCAACC 59.546 50.000 0.00 0.00 41.56 3.77
5984 9121 1.533129 GGAACTGTTCACAACGGCAAC 60.533 52.381 21.01 0.00 41.56 4.17
5985 9122 0.736053 GGAACTGTTCACAACGGCAA 59.264 50.000 21.01 0.00 41.56 4.52
5986 9123 0.107410 AGGAACTGTTCACAACGGCA 60.107 50.000 21.01 0.00 41.56 5.69
5987 9124 2.702847 AGGAACTGTTCACAACGGC 58.297 52.632 21.01 3.11 41.56 5.68
6007 9144 2.617308 GGATGGAGAAGTGCATGTGATG 59.383 50.000 0.00 0.00 34.30 3.07
6008 9145 2.240414 TGGATGGAGAAGTGCATGTGAT 59.760 45.455 0.00 0.00 34.30 3.06
6009 9146 1.629861 TGGATGGAGAAGTGCATGTGA 59.370 47.619 0.00 0.00 34.30 3.58
6010 9147 2.014857 CTGGATGGAGAAGTGCATGTG 58.985 52.381 0.00 0.00 34.30 3.21
6011 9148 1.632409 ACTGGATGGAGAAGTGCATGT 59.368 47.619 0.00 0.00 34.30 3.21
6012 9149 2.414994 ACTGGATGGAGAAGTGCATG 57.585 50.000 0.00 0.00 34.30 4.06
6013 9150 3.087031 CAAACTGGATGGAGAAGTGCAT 58.913 45.455 0.00 0.00 37.46 3.96
6014 9151 2.106338 TCAAACTGGATGGAGAAGTGCA 59.894 45.455 0.00 0.00 0.00 4.57
6015 9152 2.783135 TCAAACTGGATGGAGAAGTGC 58.217 47.619 0.00 0.00 0.00 4.40
6016 9153 5.005740 TCAATCAAACTGGATGGAGAAGTG 58.994 41.667 0.00 0.00 0.00 3.16
6017 9154 5.246981 TCAATCAAACTGGATGGAGAAGT 57.753 39.130 0.00 0.00 0.00 3.01
6018 9155 4.096081 GCTCAATCAAACTGGATGGAGAAG 59.904 45.833 10.90 0.00 44.73 2.85
6019 9156 4.012374 GCTCAATCAAACTGGATGGAGAA 58.988 43.478 10.90 0.00 44.73 2.87
6020 9157 3.009363 TGCTCAATCAAACTGGATGGAGA 59.991 43.478 10.90 0.00 44.73 3.71
6021 9158 3.349927 TGCTCAATCAAACTGGATGGAG 58.650 45.455 3.67 3.67 44.74 3.86
6022 9159 3.438216 TGCTCAATCAAACTGGATGGA 57.562 42.857 0.00 0.00 0.00 3.41
6023 9160 4.524316 TTTGCTCAATCAAACTGGATGG 57.476 40.909 0.00 0.00 31.64 3.51
6024 9161 5.754406 TGTTTTTGCTCAATCAAACTGGATG 59.246 36.000 9.78 0.00 35.86 3.51
6025 9162 5.916318 TGTTTTTGCTCAATCAAACTGGAT 58.084 33.333 9.78 0.00 35.86 3.41
6026 9163 5.336150 TGTTTTTGCTCAATCAAACTGGA 57.664 34.783 9.78 0.00 35.86 3.86
6027 9164 4.508861 CCTGTTTTTGCTCAATCAAACTGG 59.491 41.667 15.16 15.16 40.01 4.00
6028 9165 4.025480 GCCTGTTTTTGCTCAATCAAACTG 60.025 41.667 9.78 9.13 35.86 3.16
6029 9166 4.122046 GCCTGTTTTTGCTCAATCAAACT 58.878 39.130 9.78 0.00 35.86 2.66
6030 9167 3.248363 GGCCTGTTTTTGCTCAATCAAAC 59.752 43.478 0.00 4.01 35.86 2.93
6031 9168 3.465871 GGCCTGTTTTTGCTCAATCAAA 58.534 40.909 0.00 0.00 34.47 2.69
6032 9169 2.224257 GGGCCTGTTTTTGCTCAATCAA 60.224 45.455 0.84 0.00 0.00 2.57
6033 9170 1.344114 GGGCCTGTTTTTGCTCAATCA 59.656 47.619 0.84 0.00 0.00 2.57
6034 9171 1.620323 AGGGCCTGTTTTTGCTCAATC 59.380 47.619 4.50 0.00 0.00 2.67
6035 9172 1.720781 AGGGCCTGTTTTTGCTCAAT 58.279 45.000 4.50 0.00 0.00 2.57
6036 9173 2.373335 TAGGGCCTGTTTTTGCTCAA 57.627 45.000 18.53 0.00 0.00 3.02
6037 9174 2.373335 TTAGGGCCTGTTTTTGCTCA 57.627 45.000 18.53 0.00 0.00 4.26
6038 9175 3.181500 CGTATTAGGGCCTGTTTTTGCTC 60.181 47.826 18.53 0.00 0.00 4.26
6039 9176 2.752903 CGTATTAGGGCCTGTTTTTGCT 59.247 45.455 18.53 0.00 0.00 3.91
6040 9177 2.734175 GCGTATTAGGGCCTGTTTTTGC 60.734 50.000 18.53 9.50 0.00 3.68
6041 9178 2.752903 AGCGTATTAGGGCCTGTTTTTG 59.247 45.455 18.53 2.56 0.00 2.44
6042 9179 3.081710 AGCGTATTAGGGCCTGTTTTT 57.918 42.857 18.53 0.00 0.00 1.94
6043 9180 2.801077 AGCGTATTAGGGCCTGTTTT 57.199 45.000 18.53 0.06 0.00 2.43
6044 9181 5.488341 CATATAGCGTATTAGGGCCTGTTT 58.512 41.667 18.53 2.87 0.00 2.83
6045 9182 4.623171 GCATATAGCGTATTAGGGCCTGTT 60.623 45.833 18.53 5.73 0.00 3.16
6046 9183 3.118738 GCATATAGCGTATTAGGGCCTGT 60.119 47.826 18.53 7.46 0.00 4.00
6047 9184 3.458189 GCATATAGCGTATTAGGGCCTG 58.542 50.000 18.53 0.00 0.00 4.85
6048 9185 3.821421 GCATATAGCGTATTAGGGCCT 57.179 47.619 12.58 12.58 0.00 5.19
6068 9205 1.068895 TGCAGGCAACCAATCAAGTTG 59.931 47.619 0.00 0.00 45.92 3.16
6069 9206 1.412079 TGCAGGCAACCAATCAAGTT 58.588 45.000 0.00 0.00 37.17 2.66
6070 9207 1.547372 GATGCAGGCAACCAATCAAGT 59.453 47.619 0.00 0.00 37.17 3.16
6071 9208 1.134907 GGATGCAGGCAACCAATCAAG 60.135 52.381 14.80 0.00 38.55 3.02
6072 9209 0.896923 GGATGCAGGCAACCAATCAA 59.103 50.000 14.80 0.00 38.55 2.57
6073 9210 0.971959 GGGATGCAGGCAACCAATCA 60.972 55.000 20.17 0.00 40.17 2.57
6074 9211 0.685458 AGGGATGCAGGCAACCAATC 60.685 55.000 20.17 5.28 40.17 2.67
6075 9212 0.630673 TAGGGATGCAGGCAACCAAT 59.369 50.000 20.17 11.56 40.17 3.16
6076 9213 0.034186 CTAGGGATGCAGGCAACCAA 60.034 55.000 20.17 8.38 40.17 3.67
6077 9214 1.207488 ACTAGGGATGCAGGCAACCA 61.207 55.000 20.17 2.21 40.17 3.67
6078 9215 0.464554 GACTAGGGATGCAGGCAACC 60.465 60.000 11.71 11.71 38.04 3.77
6079 9216 0.464554 GGACTAGGGATGCAGGCAAC 60.465 60.000 0.00 0.00 0.00 4.17
6080 9217 1.635817 GGGACTAGGGATGCAGGCAA 61.636 60.000 0.00 0.00 0.00 4.52
6081 9218 2.072487 GGGACTAGGGATGCAGGCA 61.072 63.158 0.00 0.00 0.00 4.75
6082 9219 1.768077 AGGGACTAGGGATGCAGGC 60.768 63.158 0.00 0.00 36.02 4.85
6083 9220 2.049627 GCAGGGACTAGGGATGCAGG 62.050 65.000 0.00 0.00 36.02 4.85
6084 9221 1.340399 TGCAGGGACTAGGGATGCAG 61.340 60.000 9.30 0.00 41.65 4.41
6085 9222 1.306911 TGCAGGGACTAGGGATGCA 60.307 57.895 9.30 9.30 44.10 3.96
6086 9223 0.475906 AATGCAGGGACTAGGGATGC 59.524 55.000 0.00 0.00 36.02 3.91
6087 9224 2.304180 CCTAATGCAGGGACTAGGGATG 59.696 54.545 0.00 0.00 41.26 3.51
6088 9225 2.625639 CCTAATGCAGGGACTAGGGAT 58.374 52.381 0.00 0.00 41.26 3.85
6089 9226 2.103153 CCTAATGCAGGGACTAGGGA 57.897 55.000 0.00 0.00 41.26 4.20
6099 9236 4.552767 GCACTTGCGTATTACCTAATGCAG 60.553 45.833 0.00 0.00 29.88 4.41
6100 9237 3.311322 GCACTTGCGTATTACCTAATGCA 59.689 43.478 0.00 0.00 0.00 3.96
6101 9238 3.311322 TGCACTTGCGTATTACCTAATGC 59.689 43.478 0.00 0.00 45.83 3.56
6102 9239 5.673337 ATGCACTTGCGTATTACCTAATG 57.327 39.130 0.00 0.00 45.83 1.90
6103 9240 6.693315 AAATGCACTTGCGTATTACCTAAT 57.307 33.333 0.00 0.00 45.83 1.73
6104 9241 6.072397 ACAAAATGCACTTGCGTATTACCTAA 60.072 34.615 9.70 0.00 45.83 2.69
6105 9242 5.413213 ACAAAATGCACTTGCGTATTACCTA 59.587 36.000 9.70 0.00 45.83 3.08
6106 9243 4.217550 ACAAAATGCACTTGCGTATTACCT 59.782 37.500 9.70 0.00 45.83 3.08
6107 9244 4.481463 ACAAAATGCACTTGCGTATTACC 58.519 39.130 9.70 0.00 45.83 2.85
6108 9245 6.288419 CAAACAAAATGCACTTGCGTATTAC 58.712 36.000 9.70 0.00 45.83 1.89
6109 9246 5.403766 CCAAACAAAATGCACTTGCGTATTA 59.596 36.000 9.70 0.00 45.83 0.98
6110 9247 4.210955 CCAAACAAAATGCACTTGCGTATT 59.789 37.500 9.70 0.00 45.83 1.89
6111 9248 3.740321 CCAAACAAAATGCACTTGCGTAT 59.260 39.130 9.70 0.00 45.83 3.06
6112 9249 3.119291 CCAAACAAAATGCACTTGCGTA 58.881 40.909 9.70 0.00 45.83 4.42
6113 9250 1.932511 CCAAACAAAATGCACTTGCGT 59.067 42.857 9.70 0.00 45.83 5.24
6114 9251 1.932511 ACCAAACAAAATGCACTTGCG 59.067 42.857 9.70 0.00 45.83 4.85
6115 9252 3.487209 CCAACCAAACAAAATGCACTTGC 60.487 43.478 9.70 0.00 42.50 4.01
6116 9253 4.275838 CCAACCAAACAAAATGCACTTG 57.724 40.909 8.47 8.47 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.