Multiple sequence alignment - TraesCS1A01G106200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G106200 | chr1A | 100.000 | 6392 | 0 | 0 | 1 | 6392 | 103637401 | 103631010 | 0.000000e+00 | 11804.0 |
1 | TraesCS1A01G106200 | chr1A | 95.349 | 43 | 0 | 2 | 1477 | 1517 | 380957969 | 380958011 | 4.140000e-07 | 67.6 |
2 | TraesCS1A01G106200 | chr1B | 95.502 | 4936 | 128 | 36 | 1476 | 6392 | 150063718 | 150058858 | 0.000000e+00 | 7799.0 |
3 | TraesCS1A01G106200 | chr1B | 91.226 | 718 | 33 | 16 | 752 | 1466 | 150064484 | 150063794 | 0.000000e+00 | 950.0 |
4 | TraesCS1A01G106200 | chr1B | 95.349 | 43 | 0 | 2 | 1477 | 1517 | 410804721 | 410804763 | 4.140000e-07 | 67.6 |
5 | TraesCS1A01G106200 | chr1D | 96.994 | 4225 | 89 | 22 | 2179 | 6392 | 101579940 | 101575743 | 0.000000e+00 | 7064.0 |
6 | TraesCS1A01G106200 | chr1D | 92.936 | 1274 | 36 | 11 | 935 | 2192 | 101581211 | 101579976 | 0.000000e+00 | 1805.0 |
7 | TraesCS1A01G106200 | chr1D | 85.426 | 693 | 55 | 20 | 1 | 663 | 101582414 | 101581738 | 0.000000e+00 | 678.0 |
8 | TraesCS1A01G106200 | chr1D | 91.667 | 60 | 3 | 2 | 825 | 882 | 101581324 | 101581265 | 1.480000e-11 | 82.4 |
9 | TraesCS1A01G106200 | chr1D | 95.349 | 43 | 0 | 2 | 1477 | 1517 | 303325604 | 303325646 | 4.140000e-07 | 67.6 |
10 | TraesCS1A01G106200 | chr4B | 86.755 | 453 | 50 | 5 | 5639 | 6085 | 630376379 | 630375931 | 4.450000e-136 | 496.0 |
11 | TraesCS1A01G106200 | chr4B | 95.522 | 67 | 3 | 0 | 6325 | 6391 | 630428564 | 630428498 | 2.440000e-19 | 108.0 |
12 | TraesCS1A01G106200 | chr5A | 95.522 | 67 | 3 | 0 | 6325 | 6391 | 672416360 | 672416426 | 2.440000e-19 | 108.0 |
13 | TraesCS1A01G106200 | chr6B | 80.374 | 107 | 16 | 5 | 82 | 184 | 579937594 | 579937699 | 6.870000e-10 | 76.8 |
14 | TraesCS1A01G106200 | chr3A | 95.652 | 46 | 0 | 2 | 1476 | 1520 | 137579600 | 137579556 | 8.890000e-09 | 73.1 |
15 | TraesCS1A01G106200 | chr3D | 95.455 | 44 | 0 | 2 | 1476 | 1518 | 126949086 | 126949044 | 1.150000e-07 | 69.4 |
16 | TraesCS1A01G106200 | chr3B | 95.455 | 44 | 0 | 2 | 1476 | 1518 | 181288851 | 181288809 | 1.150000e-07 | 69.4 |
17 | TraesCS1A01G106200 | chr6D | 95.349 | 43 | 0 | 2 | 1476 | 1517 | 55924952 | 55924911 | 4.140000e-07 | 67.6 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G106200 | chr1A | 103631010 | 103637401 | 6391 | True | 11804.00 | 11804 | 100.00000 | 1 | 6392 | 1 | chr1A.!!$R1 | 6391 |
1 | TraesCS1A01G106200 | chr1B | 150058858 | 150064484 | 5626 | True | 4374.50 | 7799 | 93.36400 | 752 | 6392 | 2 | chr1B.!!$R1 | 5640 |
2 | TraesCS1A01G106200 | chr1D | 101575743 | 101582414 | 6671 | True | 2407.35 | 7064 | 91.75575 | 1 | 6392 | 4 | chr1D.!!$R1 | 6391 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
668 | 697 | 0.037697 | CGAAAGATCACGGGGTGTCA | 60.038 | 55.000 | 0.00 | 0.0 | 34.79 | 3.58 | F |
675 | 704 | 0.179067 | TCACGGGGTGTCAACAACTC | 60.179 | 55.000 | 0.00 | 0.0 | 34.79 | 3.01 | F |
676 | 705 | 0.462937 | CACGGGGTGTCAACAACTCA | 60.463 | 55.000 | 0.00 | 0.0 | 32.28 | 3.41 | F |
677 | 706 | 0.463116 | ACGGGGTGTCAACAACTCAC | 60.463 | 55.000 | 0.00 | 0.0 | 32.28 | 3.51 | F |
2368 | 2810 | 0.815213 | TCGTGTTGCAAAGCTGAGCT | 60.815 | 50.000 | 0.00 | 0.0 | 42.56 | 4.09 | F |
3269 | 3721 | 2.821437 | AGTGTAGCACTCACTACCCAT | 58.179 | 47.619 | 6.66 | 0.0 | 41.21 | 4.00 | F |
4817 | 5272 | 0.244721 | AGCAATTTCTTTCCAGCGGC | 59.755 | 50.000 | 0.00 | 0.0 | 0.00 | 6.53 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1716 | 2101 | 0.665835 | CTCTAACGCCTCGAGCTGAT | 59.334 | 55.000 | 6.99 | 0.00 | 40.39 | 2.90 | R |
2623 | 3066 | 1.344763 | ACATTAGCTACATCTCCCCGC | 59.655 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 | R |
2624 | 3067 | 3.753294 | AACATTAGCTACATCTCCCCG | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 5.73 | R |
2758 | 3210 | 5.832539 | AATCGATGGGACCTATCTGAAAT | 57.167 | 39.130 | 15.20 | 6.09 | 0.00 | 2.17 | R |
3344 | 3796 | 4.479425 | AGAGGGTCCTTCTAGCTAACTACT | 59.521 | 45.833 | 0.63 | 0.00 | 0.00 | 2.57 | R |
5226 | 5683 | 2.759973 | ATCTCTGGGAGCGCCGAA | 60.760 | 61.111 | 2.29 | 0.00 | 33.83 | 4.30 | R |
6283 | 6744 | 0.322975 | GTGCTATGGGATCAGCGGAT | 59.677 | 55.000 | 0.00 | 0.00 | 40.79 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 0.740868 | ATCGTTGCCATGACACGAGG | 60.741 | 55.000 | 15.89 | 3.19 | 36.26 | 4.63 |
30 | 31 | 1.374125 | CGTTGCCATGACACGAGGA | 60.374 | 57.895 | 0.00 | 0.00 | 0.00 | 3.71 |
122 | 123 | 2.028130 | AGTAAGCCGGAGATCTCAGTG | 58.972 | 52.381 | 23.85 | 14.30 | 0.00 | 3.66 |
163 | 164 | 3.201290 | GCATCATGCGGATATAAGGAGG | 58.799 | 50.000 | 0.00 | 0.00 | 33.95 | 4.30 |
250 | 251 | 1.071567 | CGAAGTCGCCGAAGAAGTCC | 61.072 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
252 | 253 | 1.521450 | AAGTCGCCGAAGAAGTCCGA | 61.521 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
260 | 261 | 1.827399 | GAAGAAGTCCGAGGCCACCA | 61.827 | 60.000 | 5.01 | 0.00 | 0.00 | 4.17 |
280 | 281 | 1.381872 | CCCGACACCCATCTCCTCT | 60.382 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
283 | 284 | 0.684479 | CGACACCCATCTCCTCTGGA | 60.684 | 60.000 | 0.00 | 0.00 | 35.70 | 3.86 |
288 | 289 | 0.396417 | CCCATCTCCTCTGGACGAGT | 60.396 | 60.000 | 0.00 | 0.00 | 38.11 | 4.18 |
311 | 312 | 2.063979 | CCGTCTAGGGCCACCATGA | 61.064 | 63.158 | 6.18 | 0.00 | 40.13 | 3.07 |
312 | 313 | 1.622607 | CCGTCTAGGGCCACCATGAA | 61.623 | 60.000 | 6.18 | 0.00 | 40.13 | 2.57 |
313 | 314 | 0.179073 | CGTCTAGGGCCACCATGAAG | 60.179 | 60.000 | 6.18 | 0.00 | 40.13 | 3.02 |
314 | 315 | 0.464554 | GTCTAGGGCCACCATGAAGC | 60.465 | 60.000 | 6.18 | 0.00 | 40.13 | 3.86 |
315 | 316 | 0.621571 | TCTAGGGCCACCATGAAGCT | 60.622 | 55.000 | 6.18 | 0.00 | 40.13 | 3.74 |
316 | 317 | 0.179034 | CTAGGGCCACCATGAAGCTC | 60.179 | 60.000 | 6.18 | 0.00 | 40.13 | 4.09 |
317 | 318 | 1.635817 | TAGGGCCACCATGAAGCTCC | 61.636 | 60.000 | 6.18 | 0.00 | 40.13 | 4.70 |
319 | 320 | 2.825836 | GCCACCATGAAGCTCCGG | 60.826 | 66.667 | 0.00 | 0.00 | 0.00 | 5.14 |
320 | 321 | 2.825836 | CCACCATGAAGCTCCGGC | 60.826 | 66.667 | 0.00 | 0.00 | 39.06 | 6.13 |
323 | 324 | 4.161295 | CCATGAAGCTCCGGCGGA | 62.161 | 66.667 | 29.14 | 29.14 | 44.37 | 5.54 |
407 | 429 | 4.227134 | CCCGAGTCGCCCCTCATG | 62.227 | 72.222 | 7.12 | 0.00 | 0.00 | 3.07 |
427 | 456 | 3.841379 | GAGCGACGTGGCTGTCACA | 62.841 | 63.158 | 30.34 | 0.00 | 46.36 | 3.58 |
458 | 487 | 4.825634 | TGATCGACCCGACTAGTATTCATT | 59.174 | 41.667 | 0.00 | 0.00 | 39.18 | 2.57 |
459 | 488 | 4.825546 | TCGACCCGACTAGTATTCATTC | 57.174 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
460 | 489 | 4.201657 | TCGACCCGACTAGTATTCATTCA | 58.798 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
461 | 490 | 4.825634 | TCGACCCGACTAGTATTCATTCAT | 59.174 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
490 | 519 | 7.602517 | ATCGTAAATGGTCTTCTTTCTTCAG | 57.397 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
551 | 580 | 4.884961 | AGGGCCTACAAATTAGAGAGAGA | 58.115 | 43.478 | 2.82 | 0.00 | 0.00 | 3.10 |
584 | 613 | 1.539929 | GGGAGAGCGATGTCATTGAGG | 60.540 | 57.143 | 4.07 | 0.00 | 0.00 | 3.86 |
666 | 695 | 2.358039 | TCGAAAGATCACGGGGTGT | 58.642 | 52.632 | 0.00 | 0.00 | 32.60 | 4.16 |
667 | 696 | 0.245539 | TCGAAAGATCACGGGGTGTC | 59.754 | 55.000 | 0.00 | 0.00 | 32.60 | 3.67 |
668 | 697 | 0.037697 | CGAAAGATCACGGGGTGTCA | 60.038 | 55.000 | 0.00 | 0.00 | 34.79 | 3.58 |
669 | 698 | 1.606994 | CGAAAGATCACGGGGTGTCAA | 60.607 | 52.381 | 0.00 | 0.00 | 34.79 | 3.18 |
670 | 699 | 1.804748 | GAAAGATCACGGGGTGTCAAC | 59.195 | 52.381 | 0.00 | 0.00 | 34.79 | 3.18 |
671 | 700 | 0.762418 | AAGATCACGGGGTGTCAACA | 59.238 | 50.000 | 0.00 | 0.00 | 34.79 | 3.33 |
672 | 701 | 0.762418 | AGATCACGGGGTGTCAACAA | 59.238 | 50.000 | 0.00 | 0.00 | 34.79 | 2.83 |
673 | 702 | 0.872388 | GATCACGGGGTGTCAACAAC | 59.128 | 55.000 | 0.00 | 0.00 | 34.79 | 3.32 |
674 | 703 | 0.472471 | ATCACGGGGTGTCAACAACT | 59.528 | 50.000 | 0.00 | 0.00 | 34.79 | 3.16 |
675 | 704 | 0.179067 | TCACGGGGTGTCAACAACTC | 60.179 | 55.000 | 0.00 | 0.00 | 34.79 | 3.01 |
676 | 705 | 0.462937 | CACGGGGTGTCAACAACTCA | 60.463 | 55.000 | 0.00 | 0.00 | 32.28 | 3.41 |
677 | 706 | 0.463116 | ACGGGGTGTCAACAACTCAC | 60.463 | 55.000 | 0.00 | 0.00 | 32.28 | 3.51 |
683 | 712 | 2.906354 | GTGTCAACAACTCACCAGTCT | 58.094 | 47.619 | 0.00 | 0.00 | 29.93 | 3.24 |
684 | 713 | 4.054780 | GTGTCAACAACTCACCAGTCTA | 57.945 | 45.455 | 0.00 | 0.00 | 29.93 | 2.59 |
685 | 714 | 4.051922 | GTGTCAACAACTCACCAGTCTAG | 58.948 | 47.826 | 0.00 | 0.00 | 29.93 | 2.43 |
686 | 715 | 3.060602 | GTCAACAACTCACCAGTCTAGC | 58.939 | 50.000 | 0.00 | 0.00 | 29.93 | 3.42 |
687 | 716 | 2.698274 | TCAACAACTCACCAGTCTAGCA | 59.302 | 45.455 | 0.00 | 0.00 | 29.93 | 3.49 |
688 | 717 | 3.062763 | CAACAACTCACCAGTCTAGCAG | 58.937 | 50.000 | 0.00 | 0.00 | 29.93 | 4.24 |
689 | 718 | 2.320781 | ACAACTCACCAGTCTAGCAGT | 58.679 | 47.619 | 0.00 | 0.00 | 29.93 | 4.40 |
690 | 719 | 2.036475 | ACAACTCACCAGTCTAGCAGTG | 59.964 | 50.000 | 0.00 | 0.00 | 29.93 | 3.66 |
691 | 720 | 2.294449 | ACTCACCAGTCTAGCAGTGA | 57.706 | 50.000 | 0.00 | 0.00 | 37.65 | 3.41 |
692 | 721 | 2.813907 | ACTCACCAGTCTAGCAGTGAT | 58.186 | 47.619 | 0.00 | 0.00 | 38.49 | 3.06 |
693 | 722 | 3.169099 | ACTCACCAGTCTAGCAGTGATT | 58.831 | 45.455 | 0.00 | 0.00 | 38.49 | 2.57 |
694 | 723 | 3.194542 | ACTCACCAGTCTAGCAGTGATTC | 59.805 | 47.826 | 0.00 | 0.00 | 38.49 | 2.52 |
695 | 724 | 3.435275 | TCACCAGTCTAGCAGTGATTCT | 58.565 | 45.455 | 0.00 | 0.00 | 34.44 | 2.40 |
696 | 725 | 3.445450 | TCACCAGTCTAGCAGTGATTCTC | 59.555 | 47.826 | 0.00 | 0.00 | 34.44 | 2.87 |
697 | 726 | 3.446873 | CACCAGTCTAGCAGTGATTCTCT | 59.553 | 47.826 | 0.00 | 0.00 | 31.79 | 3.10 |
698 | 727 | 3.699038 | ACCAGTCTAGCAGTGATTCTCTC | 59.301 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
699 | 728 | 3.953612 | CCAGTCTAGCAGTGATTCTCTCT | 59.046 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
700 | 729 | 4.036734 | CCAGTCTAGCAGTGATTCTCTCTC | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
701 | 730 | 4.883585 | CAGTCTAGCAGTGATTCTCTCTCT | 59.116 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
702 | 731 | 5.008019 | CAGTCTAGCAGTGATTCTCTCTCTC | 59.992 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
703 | 732 | 5.104360 | AGTCTAGCAGTGATTCTCTCTCTCT | 60.104 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
704 | 733 | 5.237344 | GTCTAGCAGTGATTCTCTCTCTCTC | 59.763 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
705 | 734 | 4.240881 | AGCAGTGATTCTCTCTCTCTCT | 57.759 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
706 | 735 | 4.202441 | AGCAGTGATTCTCTCTCTCTCTC | 58.798 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
707 | 736 | 4.080129 | AGCAGTGATTCTCTCTCTCTCTCT | 60.080 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
708 | 737 | 4.274459 | GCAGTGATTCTCTCTCTCTCTCTC | 59.726 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
709 | 738 | 5.678583 | CAGTGATTCTCTCTCTCTCTCTCT | 58.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
710 | 739 | 5.757320 | CAGTGATTCTCTCTCTCTCTCTCTC | 59.243 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
711 | 740 | 5.664908 | AGTGATTCTCTCTCTCTCTCTCTCT | 59.335 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
712 | 741 | 5.988561 | GTGATTCTCTCTCTCTCTCTCTCTC | 59.011 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
713 | 742 | 5.901853 | TGATTCTCTCTCTCTCTCTCTCTCT | 59.098 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
714 | 743 | 5.860941 | TTCTCTCTCTCTCTCTCTCTCTC | 57.139 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
715 | 744 | 5.136068 | TCTCTCTCTCTCTCTCTCTCTCT | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
716 | 745 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
717 | 746 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
718 | 747 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
719 | 748 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
720 | 749 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
721 | 750 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
722 | 751 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
723 | 752 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
724 | 753 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
725 | 754 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
726 | 755 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
727 | 756 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
728 | 757 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
729 | 758 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
730 | 759 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
731 | 760 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
732 | 761 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
733 | 762 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
734 | 763 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
735 | 764 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
736 | 765 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
737 | 766 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
738 | 767 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
739 | 768 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
740 | 769 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
741 | 770 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
742 | 771 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
743 | 772 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
744 | 773 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
745 | 774 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
746 | 775 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
747 | 776 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
748 | 777 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
749 | 778 | 5.103728 | TCTCTCTCTCTCTCTCTCTCTCTCT | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
750 | 779 | 5.136828 | TCTCTCTCTCTCTCTCTCTCTCTC | 58.863 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
776 | 805 | 8.499403 | TCTCTCTCTTCATGTCCATATATACG | 57.501 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
777 | 806 | 7.554476 | TCTCTCTCTTCATGTCCATATATACGG | 59.446 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
778 | 807 | 6.603599 | TCTCTCTTCATGTCCATATATACGGG | 59.396 | 42.308 | 0.00 | 0.00 | 0.00 | 5.28 |
779 | 808 | 6.253758 | TCTCTTCATGTCCATATATACGGGT | 58.746 | 40.000 | 0.00 | 0.00 | 0.00 | 5.28 |
794 | 823 | 3.775654 | GGTGCCACTCTCCCCTCG | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
795 | 824 | 2.680352 | GTGCCACTCTCCCCTCGA | 60.680 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
865 | 1157 | 1.073025 | GTGTCCATCACCCAGCACA | 59.927 | 57.895 | 0.00 | 0.00 | 40.84 | 4.57 |
867 | 1159 | 1.073025 | GTCCATCACCCAGCACACA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
869 | 1161 | 1.228215 | CCATCACCCAGCACACACA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 3.72 |
873 | 1165 | 1.893808 | CACCCAGCACACACACTCC | 60.894 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
882 | 1174 | 2.796557 | CACACACACTCCCTCTCTCTA | 58.203 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
949 | 1263 | 3.843619 | TCTCTCTCTCTCTCTCTCCACAA | 59.156 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
962 | 1276 | 1.464608 | CTCCACAATTCGACGCATTGT | 59.535 | 47.619 | 18.18 | 18.18 | 44.14 | 2.71 |
1021 | 1335 | 3.542676 | TGGTGCCTTCCACGACGT | 61.543 | 61.111 | 0.00 | 0.00 | 45.62 | 4.34 |
1104 | 1418 | 1.666553 | GACGGTTGACATGTCCGCA | 60.667 | 57.895 | 22.85 | 2.21 | 46.92 | 5.69 |
1428 | 1746 | 3.179830 | CTCACGCTTCAGGTACATACAC | 58.820 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1429 | 1747 | 2.559231 | TCACGCTTCAGGTACATACACA | 59.441 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
1430 | 1748 | 2.666508 | CACGCTTCAGGTACATACACAC | 59.333 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1431 | 1749 | 2.297880 | ACGCTTCAGGTACATACACACA | 59.702 | 45.455 | 0.00 | 0.00 | 0.00 | 3.72 |
1432 | 1750 | 3.056107 | ACGCTTCAGGTACATACACACAT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 3.21 |
1433 | 1751 | 4.158949 | ACGCTTCAGGTACATACACACATA | 59.841 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1434 | 1752 | 4.503007 | CGCTTCAGGTACATACACACATAC | 59.497 | 45.833 | 0.00 | 0.00 | 0.00 | 2.39 |
1435 | 1753 | 5.416083 | GCTTCAGGTACATACACACATACA | 58.584 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1527 | 1909 | 2.159226 | ACAGAGGAGTACATGCTTACGC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.42 |
1613 | 1995 | 6.531594 | GGTTTCTTAATCCTGCAAGCATTAAC | 59.468 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
1715 | 2100 | 6.808212 | GCACGGTTTTACTACATAACAGTCTA | 59.192 | 38.462 | 0.00 | 0.00 | 29.81 | 2.59 |
1716 | 2101 | 7.329226 | GCACGGTTTTACTACATAACAGTCTAA | 59.671 | 37.037 | 0.00 | 0.00 | 29.81 | 2.10 |
1855 | 2248 | 1.337817 | CTCAAGACGTCGACAAGCCG | 61.338 | 60.000 | 17.16 | 3.32 | 0.00 | 5.52 |
1866 | 2259 | 1.854743 | CGACAAGCCGATGTGTAGATG | 59.145 | 52.381 | 0.00 | 0.00 | 32.57 | 2.90 |
1972 | 2365 | 1.266989 | GCAGTGCCACTTAACCAACTC | 59.733 | 52.381 | 2.85 | 0.00 | 0.00 | 3.01 |
1973 | 2366 | 2.571212 | CAGTGCCACTTAACCAACTCA | 58.429 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
1974 | 2367 | 3.149196 | CAGTGCCACTTAACCAACTCAT | 58.851 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
1982 | 2375 | 5.065218 | CCACTTAACCAACTCATGACTATGC | 59.935 | 44.000 | 0.00 | 0.00 | 34.21 | 3.14 |
1996 | 2389 | 2.086869 | ACTATGCTGATGTTGGTGTGC | 58.913 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
2018 | 2411 | 4.380761 | GCATGTGATGTGGTTTGCTTATCA | 60.381 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
2019 | 2412 | 5.680408 | GCATGTGATGTGGTTTGCTTATCAT | 60.680 | 40.000 | 0.00 | 0.00 | 31.28 | 2.45 |
2020 | 2413 | 6.459985 | GCATGTGATGTGGTTTGCTTATCATA | 60.460 | 38.462 | 0.00 | 0.00 | 31.28 | 2.15 |
2021 | 2414 | 7.482474 | CATGTGATGTGGTTTGCTTATCATAA | 58.518 | 34.615 | 0.00 | 0.00 | 31.28 | 1.90 |
2022 | 2415 | 7.643569 | TGTGATGTGGTTTGCTTATCATAAT | 57.356 | 32.000 | 0.00 | 0.00 | 31.28 | 1.28 |
2023 | 2416 | 8.744568 | TGTGATGTGGTTTGCTTATCATAATA | 57.255 | 30.769 | 0.00 | 0.00 | 31.28 | 0.98 |
2060 | 2453 | 2.171027 | CTGCCCCATTTGCATATTGGTT | 59.829 | 45.455 | 6.53 | 0.00 | 38.22 | 3.67 |
2061 | 2454 | 3.378512 | TGCCCCATTTGCATATTGGTTA | 58.621 | 40.909 | 6.53 | 0.00 | 32.85 | 2.85 |
2062 | 2455 | 3.972638 | TGCCCCATTTGCATATTGGTTAT | 59.027 | 39.130 | 6.53 | 0.00 | 32.85 | 1.89 |
2063 | 2456 | 4.202336 | TGCCCCATTTGCATATTGGTTATG | 60.202 | 41.667 | 6.53 | 0.00 | 40.67 | 1.90 |
2064 | 2457 | 4.040217 | GCCCCATTTGCATATTGGTTATGA | 59.960 | 41.667 | 6.53 | 0.00 | 40.22 | 2.15 |
2065 | 2458 | 5.786311 | CCCCATTTGCATATTGGTTATGAG | 58.214 | 41.667 | 6.53 | 0.00 | 40.22 | 2.90 |
2066 | 2459 | 5.279607 | CCCCATTTGCATATTGGTTATGAGG | 60.280 | 44.000 | 6.53 | 0.00 | 40.22 | 3.86 |
2067 | 2460 | 5.305128 | CCCATTTGCATATTGGTTATGAGGT | 59.695 | 40.000 | 8.70 | 0.00 | 40.22 | 3.85 |
2068 | 2461 | 6.183360 | CCCATTTGCATATTGGTTATGAGGTT | 60.183 | 38.462 | 8.70 | 0.00 | 40.22 | 3.50 |
2069 | 2462 | 7.015098 | CCCATTTGCATATTGGTTATGAGGTTA | 59.985 | 37.037 | 8.70 | 0.00 | 40.22 | 2.85 |
2070 | 2463 | 8.084073 | CCATTTGCATATTGGTTATGAGGTTAG | 58.916 | 37.037 | 0.00 | 0.00 | 40.22 | 2.34 |
2071 | 2464 | 6.633500 | TTGCATATTGGTTATGAGGTTAGC | 57.367 | 37.500 | 0.00 | 0.00 | 40.22 | 3.09 |
2072 | 2465 | 5.940617 | TGCATATTGGTTATGAGGTTAGCT | 58.059 | 37.500 | 0.00 | 0.00 | 40.22 | 3.32 |
2073 | 2466 | 7.073457 | TGCATATTGGTTATGAGGTTAGCTA | 57.927 | 36.000 | 0.00 | 0.00 | 40.22 | 3.32 |
2074 | 2467 | 7.161404 | TGCATATTGGTTATGAGGTTAGCTAG | 58.839 | 38.462 | 0.00 | 0.00 | 40.22 | 3.42 |
2075 | 2468 | 6.092807 | GCATATTGGTTATGAGGTTAGCTAGC | 59.907 | 42.308 | 6.62 | 6.62 | 40.22 | 3.42 |
2176 | 2569 | 2.828520 | AGAGAGGTGATATATGTGGGCG | 59.171 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
2212 | 2654 | 4.201851 | CGATTTATTTGTGAGGCAGGACTG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
2281 | 2723 | 1.707632 | CACAGAGGACTTTCTGCTCG | 58.292 | 55.000 | 3.10 | 0.00 | 46.77 | 5.03 |
2302 | 2744 | 2.350772 | GGTACAATGCTGTCTTGTGCAC | 60.351 | 50.000 | 10.75 | 10.75 | 42.26 | 4.57 |
2368 | 2810 | 0.815213 | TCGTGTTGCAAAGCTGAGCT | 60.815 | 50.000 | 0.00 | 0.00 | 42.56 | 4.09 |
2444 | 2886 | 4.151512 | TGTTGTGATGCACTACATGTTACG | 59.848 | 41.667 | 2.30 | 0.00 | 42.80 | 3.18 |
2518 | 2960 | 9.466497 | AATATAATTCAAGCCAAAGTGAGAGAA | 57.534 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
2614 | 3057 | 6.992063 | AACTCCAAACAGATGTAGCTAATG | 57.008 | 37.500 | 0.00 | 0.00 | 0.00 | 1.90 |
2616 | 3059 | 6.476378 | ACTCCAAACAGATGTAGCTAATGTT | 58.524 | 36.000 | 0.00 | 2.13 | 35.70 | 2.71 |
2735 | 3184 | 8.681806 | TGTTTTCAGTTCATGACAGAATTAACA | 58.318 | 29.630 | 0.00 | 6.11 | 37.77 | 2.41 |
2758 | 3210 | 8.851541 | ACATCAATATGCACACATATGTATCA | 57.148 | 30.769 | 8.32 | 7.14 | 46.58 | 2.15 |
2759 | 3211 | 9.457436 | ACATCAATATGCACACATATGTATCAT | 57.543 | 29.630 | 8.32 | 13.43 | 46.58 | 2.45 |
2818 | 3270 | 3.734463 | TGAGCACATAGTTTCCGAAACA | 58.266 | 40.909 | 22.84 | 11.33 | 43.79 | 2.83 |
3031 | 3483 | 9.263446 | AGAGTTGTCTAACCCTATACAAACATA | 57.737 | 33.333 | 0.00 | 0.00 | 37.52 | 2.29 |
3269 | 3721 | 2.821437 | AGTGTAGCACTCACTACCCAT | 58.179 | 47.619 | 6.66 | 0.00 | 41.21 | 4.00 |
3323 | 3775 | 7.121382 | TGAGAGCAAAATAAGATGAAAGGGAT | 58.879 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
3342 | 3794 | 6.663734 | AGGGATAATAAAACACTCTCTTGGG | 58.336 | 40.000 | 0.00 | 0.00 | 0.00 | 4.12 |
3343 | 3795 | 6.217693 | AGGGATAATAAAACACTCTCTTGGGT | 59.782 | 38.462 | 0.00 | 0.00 | 0.00 | 4.51 |
3344 | 3796 | 7.404980 | AGGGATAATAAAACACTCTCTTGGGTA | 59.595 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
3594 | 4046 | 6.881065 | AGACAATGATGTATATGCATGTACCC | 59.119 | 38.462 | 25.31 | 18.58 | 40.74 | 3.69 |
4493 | 4947 | 2.932234 | CGGGTTCGGTGAGCACTCT | 61.932 | 63.158 | 0.16 | 0.00 | 0.00 | 3.24 |
4732 | 5187 | 8.161425 | TGCTTATAGGAACTGTTAAAGAAAGGT | 58.839 | 33.333 | 0.00 | 0.00 | 41.52 | 3.50 |
4779 | 5234 | 4.785914 | TCTGGGACCAACCATAAATACTCA | 59.214 | 41.667 | 0.00 | 0.00 | 40.36 | 3.41 |
4817 | 5272 | 0.244721 | AGCAATTTCTTTCCAGCGGC | 59.755 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
4837 | 5292 | 5.926542 | GCGGCTCATATGAACAGATTACTTA | 59.073 | 40.000 | 10.01 | 0.00 | 0.00 | 2.24 |
4838 | 5293 | 6.591834 | GCGGCTCATATGAACAGATTACTTAT | 59.408 | 38.462 | 10.01 | 0.00 | 0.00 | 1.73 |
4916 | 5373 | 4.318332 | TGTCTGATTGGACACTCATGTTC | 58.682 | 43.478 | 0.00 | 0.00 | 39.95 | 3.18 |
5064 | 5521 | 4.848357 | AGCCTAACAGCACAAATCACTAT | 58.152 | 39.130 | 0.00 | 0.00 | 34.23 | 2.12 |
5067 | 5524 | 5.355350 | GCCTAACAGCACAAATCACTATTCT | 59.645 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5226 | 5683 | 0.241749 | CACCACTGCATGCACGAATT | 59.758 | 50.000 | 18.46 | 0.00 | 0.00 | 2.17 |
5255 | 5712 | 1.607801 | CCAGAGATGGTCACAGCCGA | 61.608 | 60.000 | 0.00 | 0.00 | 32.15 | 5.54 |
5492 | 5949 | 3.036819 | TCTCTGACAGCTATTGCCAGAT | 58.963 | 45.455 | 6.95 | 0.00 | 40.80 | 2.90 |
5551 | 6008 | 3.434167 | CCATGACCTGGCTAGCTTTGTAT | 60.434 | 47.826 | 15.72 | 0.12 | 38.47 | 2.29 |
5759 | 6216 | 0.671781 | ACAGAGGCAGCAATGTCGAC | 60.672 | 55.000 | 9.11 | 9.11 | 0.00 | 4.20 |
5847 | 6304 | 4.321745 | CAGCAGCGCACAAATTTAACTAAG | 59.678 | 41.667 | 11.47 | 0.00 | 0.00 | 2.18 |
6024 | 6482 | 6.662414 | TTGTGCAGTACTTACTATTCATGC | 57.338 | 37.500 | 0.00 | 0.00 | 34.13 | 4.06 |
6111 | 6569 | 3.242870 | GCAAACAGTCTGACAAGGTTCAG | 60.243 | 47.826 | 10.88 | 8.62 | 43.93 | 3.02 |
6254 | 6715 | 3.416156 | GAGAGTGTGCAAGGGAGAAATT | 58.584 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
6265 | 6726 | 4.982241 | AGGGAGAAATTCTTCACTGACA | 57.018 | 40.909 | 3.40 | 0.00 | 33.64 | 3.58 |
6283 | 6744 | 1.159285 | CAAAGGCATCGAAGAGCACA | 58.841 | 50.000 | 9.57 | 0.00 | 43.63 | 4.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 0.097674 | GTGTCATGGCAACGATCTGC | 59.902 | 55.000 | 0.00 | 0.00 | 41.85 | 4.26 |
7 | 8 | 0.371301 | CGTGTCATGGCAACGATCTG | 59.629 | 55.000 | 14.43 | 0.00 | 42.51 | 2.90 |
13 | 14 | 1.197721 | CTTTCCTCGTGTCATGGCAAC | 59.802 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
21 | 22 | 1.544691 | TCCTAGTGCTTTCCTCGTGTC | 59.455 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
29 | 30 | 0.460459 | GAGGCGGTCCTAGTGCTTTC | 60.460 | 60.000 | 0.00 | 0.00 | 44.46 | 2.62 |
30 | 31 | 1.597461 | GAGGCGGTCCTAGTGCTTT | 59.403 | 57.895 | 0.00 | 0.00 | 44.46 | 3.51 |
101 | 102 | 3.215151 | CACTGAGATCTCCGGCTTACTA | 58.785 | 50.000 | 20.03 | 0.00 | 0.00 | 1.82 |
142 | 143 | 3.201290 | CCTCCTTATATCCGCATGATGC | 58.799 | 50.000 | 7.49 | 7.49 | 40.69 | 3.91 |
145 | 146 | 3.506398 | TCACCTCCTTATATCCGCATGA | 58.494 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
152 | 153 | 1.618837 | TGCGGCTCACCTCCTTATATC | 59.381 | 52.381 | 0.00 | 0.00 | 0.00 | 1.63 |
154 | 155 | 0.750850 | GTGCGGCTCACCTCCTTATA | 59.249 | 55.000 | 0.00 | 0.00 | 39.79 | 0.98 |
219 | 220 | 3.575351 | GACTTCGGCTGTCGGCTGT | 62.575 | 63.158 | 12.30 | 0.00 | 46.74 | 4.40 |
240 | 241 | 1.446272 | GTGGCCTCGGACTTCTTCG | 60.446 | 63.158 | 3.32 | 0.00 | 0.00 | 3.79 |
260 | 261 | 2.687566 | GGAGATGGGTGTCGGGGT | 60.688 | 66.667 | 0.00 | 0.00 | 0.00 | 4.95 |
264 | 265 | 0.684479 | TCCAGAGGAGATGGGTGTCG | 60.684 | 60.000 | 0.00 | 0.00 | 38.44 | 4.35 |
266 | 267 | 0.972983 | CGTCCAGAGGAGATGGGTGT | 60.973 | 60.000 | 0.00 | 0.00 | 38.44 | 4.16 |
267 | 268 | 0.684479 | TCGTCCAGAGGAGATGGGTG | 60.684 | 60.000 | 0.00 | 0.00 | 38.44 | 4.61 |
268 | 269 | 0.396417 | CTCGTCCAGAGGAGATGGGT | 60.396 | 60.000 | 11.08 | 0.00 | 43.80 | 4.51 |
269 | 270 | 2.424474 | CTCGTCCAGAGGAGATGGG | 58.576 | 63.158 | 11.08 | 0.00 | 43.80 | 4.00 |
283 | 284 | 3.862402 | CTAGACGGCGCGACTCGT | 61.862 | 66.667 | 12.10 | 16.66 | 42.67 | 4.18 |
298 | 299 | 1.635817 | GGAGCTTCATGGTGGCCCTA | 61.636 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
335 | 336 | 2.881352 | CTTCGAAGGACGCCTCGC | 60.881 | 66.667 | 17.70 | 0.00 | 42.26 | 5.03 |
371 | 393 | 1.439644 | CGGAAGACTAGAGCAGCCC | 59.560 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
405 | 427 | 4.457496 | CAGCCACGTCGCTCCCAT | 62.457 | 66.667 | 4.12 | 0.00 | 36.82 | 4.00 |
490 | 519 | 4.244862 | CAGAAATGGGTTGTGTTTATGGC | 58.755 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
551 | 580 | 1.662686 | CTCTCCCTTCCCCTCTGTTT | 58.337 | 55.000 | 0.00 | 0.00 | 0.00 | 2.83 |
584 | 613 | 8.279103 | GTCATGAGCTTAATTGTCTATGCTTAC | 58.721 | 37.037 | 0.00 | 0.00 | 33.68 | 2.34 |
647 | 676 | 0.902531 | ACACCCCGTGATCTTTCGAT | 59.097 | 50.000 | 0.00 | 0.00 | 36.96 | 3.59 |
663 | 692 | 2.906354 | AGACTGGTGAGTTGTTGACAC | 58.094 | 47.619 | 0.00 | 0.00 | 30.16 | 3.67 |
664 | 693 | 3.492656 | GCTAGACTGGTGAGTTGTTGACA | 60.493 | 47.826 | 0.00 | 0.00 | 30.16 | 3.58 |
665 | 694 | 3.060602 | GCTAGACTGGTGAGTTGTTGAC | 58.939 | 50.000 | 0.00 | 0.00 | 30.16 | 3.18 |
666 | 695 | 2.698274 | TGCTAGACTGGTGAGTTGTTGA | 59.302 | 45.455 | 0.00 | 0.00 | 30.16 | 3.18 |
667 | 696 | 3.062763 | CTGCTAGACTGGTGAGTTGTTG | 58.937 | 50.000 | 0.00 | 0.00 | 30.16 | 3.33 |
668 | 697 | 2.700897 | ACTGCTAGACTGGTGAGTTGTT | 59.299 | 45.455 | 0.00 | 0.00 | 30.16 | 2.83 |
669 | 698 | 2.036475 | CACTGCTAGACTGGTGAGTTGT | 59.964 | 50.000 | 0.00 | 0.00 | 30.16 | 3.32 |
670 | 699 | 2.297315 | TCACTGCTAGACTGGTGAGTTG | 59.703 | 50.000 | 0.00 | 0.00 | 34.38 | 3.16 |
671 | 700 | 2.598565 | TCACTGCTAGACTGGTGAGTT | 58.401 | 47.619 | 0.00 | 0.00 | 34.38 | 3.01 |
672 | 701 | 2.294449 | TCACTGCTAGACTGGTGAGT | 57.706 | 50.000 | 0.00 | 0.00 | 34.38 | 3.41 |
673 | 702 | 3.446873 | AGAATCACTGCTAGACTGGTGAG | 59.553 | 47.826 | 0.00 | 0.00 | 41.11 | 3.51 |
674 | 703 | 3.435275 | AGAATCACTGCTAGACTGGTGA | 58.565 | 45.455 | 0.00 | 2.06 | 41.84 | 4.02 |
675 | 704 | 3.446873 | AGAGAATCACTGCTAGACTGGTG | 59.553 | 47.826 | 0.00 | 0.00 | 37.82 | 4.17 |
676 | 705 | 3.699038 | GAGAGAATCACTGCTAGACTGGT | 59.301 | 47.826 | 0.00 | 0.00 | 37.82 | 4.00 |
677 | 706 | 3.953612 | AGAGAGAATCACTGCTAGACTGG | 59.046 | 47.826 | 0.00 | 0.00 | 33.77 | 4.00 |
678 | 707 | 4.883585 | AGAGAGAGAATCACTGCTAGACTG | 59.116 | 45.833 | 0.00 | 0.00 | 35.72 | 3.51 |
679 | 708 | 5.104360 | AGAGAGAGAGAATCACTGCTAGACT | 60.104 | 44.000 | 0.00 | 0.00 | 35.72 | 3.24 |
680 | 709 | 5.126067 | AGAGAGAGAGAATCACTGCTAGAC | 58.874 | 45.833 | 0.00 | 0.00 | 35.72 | 2.59 |
681 | 710 | 5.130975 | AGAGAGAGAGAGAATCACTGCTAGA | 59.869 | 44.000 | 0.00 | 0.00 | 35.72 | 2.43 |
682 | 711 | 5.371526 | AGAGAGAGAGAGAATCACTGCTAG | 58.628 | 45.833 | 0.00 | 0.00 | 35.72 | 3.42 |
683 | 712 | 5.130975 | AGAGAGAGAGAGAGAATCACTGCTA | 59.869 | 44.000 | 0.00 | 0.00 | 35.72 | 3.49 |
684 | 713 | 4.080129 | AGAGAGAGAGAGAGAATCACTGCT | 60.080 | 45.833 | 0.00 | 0.00 | 35.72 | 4.24 |
685 | 714 | 4.202441 | AGAGAGAGAGAGAGAATCACTGC | 58.798 | 47.826 | 0.00 | 0.00 | 35.72 | 4.40 |
686 | 715 | 5.678583 | AGAGAGAGAGAGAGAGAATCACTG | 58.321 | 45.833 | 0.00 | 0.00 | 35.72 | 3.66 |
687 | 716 | 5.664908 | AGAGAGAGAGAGAGAGAGAATCACT | 59.335 | 44.000 | 0.00 | 0.00 | 39.29 | 3.41 |
688 | 717 | 5.923204 | AGAGAGAGAGAGAGAGAGAATCAC | 58.077 | 45.833 | 0.00 | 0.00 | 37.82 | 3.06 |
689 | 718 | 5.901853 | AGAGAGAGAGAGAGAGAGAGAATCA | 59.098 | 44.000 | 0.00 | 0.00 | 37.82 | 2.57 |
690 | 719 | 6.267471 | AGAGAGAGAGAGAGAGAGAGAGAATC | 59.733 | 46.154 | 0.00 | 0.00 | 0.00 | 2.52 |
691 | 720 | 6.142498 | AGAGAGAGAGAGAGAGAGAGAGAAT | 58.858 | 44.000 | 0.00 | 0.00 | 0.00 | 2.40 |
692 | 721 | 5.523588 | AGAGAGAGAGAGAGAGAGAGAGAA | 58.476 | 45.833 | 0.00 | 0.00 | 0.00 | 2.87 |
693 | 722 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
694 | 723 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
695 | 724 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
696 | 725 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
697 | 726 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
698 | 727 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
699 | 728 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
700 | 729 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
701 | 730 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
702 | 731 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
703 | 732 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
704 | 733 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
705 | 734 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
706 | 735 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
707 | 736 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
708 | 737 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
709 | 738 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
710 | 739 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
711 | 740 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
712 | 741 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
713 | 742 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
714 | 743 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
715 | 744 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
716 | 745 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
717 | 746 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
718 | 747 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
719 | 748 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
720 | 749 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
721 | 750 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
722 | 751 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
723 | 752 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
724 | 753 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
725 | 754 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
726 | 755 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
727 | 756 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
728 | 757 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
729 | 758 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
730 | 759 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
731 | 760 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
732 | 761 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
733 | 762 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
734 | 763 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
735 | 764 | 5.103728 | AGAGAGAGAGAGAGAGAGAGAGAGA | 60.104 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
736 | 765 | 5.139727 | AGAGAGAGAGAGAGAGAGAGAGAG | 58.860 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
737 | 766 | 5.136068 | AGAGAGAGAGAGAGAGAGAGAGA | 57.864 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
738 | 767 | 5.362143 | TGAAGAGAGAGAGAGAGAGAGAGAG | 59.638 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
739 | 768 | 5.272402 | TGAAGAGAGAGAGAGAGAGAGAGA | 58.728 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
740 | 769 | 5.604758 | TGAAGAGAGAGAGAGAGAGAGAG | 57.395 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
741 | 770 | 5.426509 | ACATGAAGAGAGAGAGAGAGAGAGA | 59.573 | 44.000 | 0.00 | 0.00 | 0.00 | 3.10 |
742 | 771 | 5.678583 | ACATGAAGAGAGAGAGAGAGAGAG | 58.321 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
743 | 772 | 5.396772 | GGACATGAAGAGAGAGAGAGAGAGA | 60.397 | 48.000 | 0.00 | 0.00 | 0.00 | 3.10 |
744 | 773 | 4.818546 | GGACATGAAGAGAGAGAGAGAGAG | 59.181 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
745 | 774 | 4.227073 | TGGACATGAAGAGAGAGAGAGAGA | 59.773 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
746 | 775 | 4.525996 | TGGACATGAAGAGAGAGAGAGAG | 58.474 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
747 | 776 | 4.582973 | TGGACATGAAGAGAGAGAGAGA | 57.417 | 45.455 | 0.00 | 0.00 | 0.00 | 3.10 |
748 | 777 | 8.812513 | ATATATGGACATGAAGAGAGAGAGAG | 57.187 | 38.462 | 0.00 | 0.00 | 0.00 | 3.20 |
749 | 778 | 9.679661 | GTATATATGGACATGAAGAGAGAGAGA | 57.320 | 37.037 | 0.00 | 0.00 | 0.00 | 3.10 |
750 | 779 | 8.611757 | CGTATATATGGACATGAAGAGAGAGAG | 58.388 | 40.741 | 0.00 | 0.00 | 0.00 | 3.20 |
776 | 805 | 3.403558 | GAGGGGAGAGTGGCACCC | 61.404 | 72.222 | 15.27 | 8.32 | 45.86 | 4.61 |
777 | 806 | 3.775654 | CGAGGGGAGAGTGGCACC | 61.776 | 72.222 | 15.27 | 5.99 | 0.00 | 5.01 |
778 | 807 | 2.680352 | TCGAGGGGAGAGTGGCAC | 60.680 | 66.667 | 10.29 | 10.29 | 0.00 | 5.01 |
779 | 808 | 2.363018 | CTCGAGGGGAGAGTGGCA | 60.363 | 66.667 | 3.91 | 0.00 | 46.23 | 4.92 |
810 | 1102 | 4.024048 | GGAGTTGTGTCATTTGTGTGTAGG | 60.024 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
811 | 1103 | 4.024048 | GGGAGTTGTGTCATTTGTGTGTAG | 60.024 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
812 | 1104 | 3.880490 | GGGAGTTGTGTCATTTGTGTGTA | 59.120 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
818 | 1110 | 2.227388 | GAGCTGGGAGTTGTGTCATTTG | 59.773 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
819 | 1111 | 2.508526 | GAGCTGGGAGTTGTGTCATTT | 58.491 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
820 | 1112 | 1.609061 | CGAGCTGGGAGTTGTGTCATT | 60.609 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
821 | 1113 | 0.036952 | CGAGCTGGGAGTTGTGTCAT | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
822 | 1114 | 1.112916 | TCGAGCTGGGAGTTGTGTCA | 61.113 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
823 | 1115 | 0.247736 | ATCGAGCTGGGAGTTGTGTC | 59.752 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
912 | 1226 | 0.039074 | AGAGAGTATGCGCCGTATGC | 60.039 | 55.000 | 4.18 | 0.00 | 0.00 | 3.14 |
913 | 1227 | 1.537638 | AGAGAGAGTATGCGCCGTATG | 59.462 | 52.381 | 4.18 | 0.00 | 0.00 | 2.39 |
914 | 1228 | 1.807742 | GAGAGAGAGTATGCGCCGTAT | 59.192 | 52.381 | 4.18 | 0.00 | 0.00 | 3.06 |
915 | 1229 | 1.202663 | AGAGAGAGAGTATGCGCCGTA | 60.203 | 52.381 | 4.18 | 0.00 | 0.00 | 4.02 |
916 | 1230 | 0.464735 | AGAGAGAGAGTATGCGCCGT | 60.465 | 55.000 | 4.18 | 0.00 | 0.00 | 5.68 |
917 | 1231 | 0.237235 | GAGAGAGAGAGTATGCGCCG | 59.763 | 60.000 | 4.18 | 0.00 | 0.00 | 6.46 |
918 | 1232 | 1.535462 | GAGAGAGAGAGAGTATGCGCC | 59.465 | 57.143 | 4.18 | 0.00 | 0.00 | 6.53 |
919 | 1233 | 2.480419 | GAGAGAGAGAGAGAGTATGCGC | 59.520 | 54.545 | 0.00 | 0.00 | 0.00 | 6.09 |
949 | 1263 | 2.217847 | GTGCGTATACAATGCGTCGAAT | 59.782 | 45.455 | 3.32 | 0.00 | 43.57 | 3.34 |
988 | 1302 | 2.741985 | CACCATCGCGTTGGCTCA | 60.742 | 61.111 | 31.08 | 0.00 | 40.68 | 4.26 |
1150 | 1464 | 1.003233 | GGAAGAAGCCTTGCTCCGT | 60.003 | 57.895 | 0.00 | 0.00 | 38.25 | 4.69 |
1527 | 1909 | 1.266718 | GTGGTATGTGTGTGCCTTGTG | 59.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
1613 | 1995 | 8.647143 | AGTATGTTTCATGTTTGAAGGTTTTG | 57.353 | 30.769 | 0.00 | 0.00 | 42.60 | 2.44 |
1715 | 2100 | 1.066303 | CTCTAACGCCTCGAGCTGATT | 59.934 | 52.381 | 6.99 | 0.85 | 40.39 | 2.57 |
1716 | 2101 | 0.665835 | CTCTAACGCCTCGAGCTGAT | 59.334 | 55.000 | 6.99 | 0.00 | 40.39 | 2.90 |
1732 | 2117 | 4.985538 | ACACTGTCTTTCTCTCTCTCTCT | 58.014 | 43.478 | 0.00 | 0.00 | 0.00 | 3.10 |
1733 | 2118 | 4.759693 | TGACACTGTCTTTCTCTCTCTCTC | 59.240 | 45.833 | 10.54 | 0.00 | 33.15 | 3.20 |
1734 | 2119 | 4.518970 | GTGACACTGTCTTTCTCTCTCTCT | 59.481 | 45.833 | 10.54 | 0.00 | 33.15 | 3.10 |
1735 | 2120 | 4.518970 | AGTGACACTGTCTTTCTCTCTCTC | 59.481 | 45.833 | 7.47 | 0.00 | 33.15 | 3.20 |
1855 | 2248 | 5.294356 | TGTATAAACGCCCATCTACACATC | 58.706 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1866 | 2259 | 1.666700 | TCAACGCATGTATAAACGCCC | 59.333 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
1894 | 2287 | 4.079090 | GTCACATCTGACGCCTCG | 57.921 | 61.111 | 0.00 | 0.00 | 37.67 | 4.63 |
1938 | 2331 | 1.731160 | GCACTGCTGCTAGCTATATGC | 59.269 | 52.381 | 17.23 | 14.77 | 42.97 | 3.14 |
1972 | 2365 | 3.943381 | ACACCAACATCAGCATAGTCATG | 59.057 | 43.478 | 0.00 | 0.00 | 35.07 | 3.07 |
1973 | 2366 | 3.943381 | CACACCAACATCAGCATAGTCAT | 59.057 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
1974 | 2367 | 3.337358 | CACACCAACATCAGCATAGTCA | 58.663 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1982 | 2375 | 1.881324 | TCACATGCACACCAACATCAG | 59.119 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1996 | 2389 | 5.313520 | TGATAAGCAAACCACATCACATG | 57.686 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
2018 | 2411 | 7.069344 | GGCAGGCCCAGGATTATTATTATTAT | 58.931 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
2019 | 2412 | 6.431722 | GGCAGGCCCAGGATTATTATTATTA | 58.568 | 40.000 | 0.00 | 0.00 | 0.00 | 0.98 |
2020 | 2413 | 5.272402 | GGCAGGCCCAGGATTATTATTATT | 58.728 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
2021 | 2414 | 4.871822 | GGCAGGCCCAGGATTATTATTAT | 58.128 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
2022 | 2415 | 4.316025 | GGCAGGCCCAGGATTATTATTA | 57.684 | 45.455 | 0.00 | 0.00 | 0.00 | 0.98 |
2023 | 2416 | 3.175438 | GGCAGGCCCAGGATTATTATT | 57.825 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
2049 | 2442 | 5.940617 | AGCTAACCTCATAACCAATATGCA | 58.059 | 37.500 | 0.00 | 0.00 | 41.08 | 3.96 |
2071 | 2464 | 8.637986 | CAAATCTATTAGGGGATAGCTAGCTAG | 58.362 | 40.741 | 27.42 | 16.84 | 31.15 | 3.42 |
2072 | 2465 | 7.565398 | CCAAATCTATTAGGGGATAGCTAGCTA | 59.435 | 40.741 | 26.09 | 26.09 | 31.15 | 3.32 |
2073 | 2466 | 6.385467 | CCAAATCTATTAGGGGATAGCTAGCT | 59.615 | 42.308 | 23.12 | 23.12 | 31.15 | 3.32 |
2074 | 2467 | 6.384305 | TCCAAATCTATTAGGGGATAGCTAGC | 59.616 | 42.308 | 6.62 | 6.62 | 31.15 | 3.42 |
2075 | 2468 | 7.979786 | TCCAAATCTATTAGGGGATAGCTAG | 57.020 | 40.000 | 0.00 | 0.00 | 31.15 | 3.42 |
2092 | 2485 | 8.398665 | GTTGACTGTAACCATATCTTCCAAATC | 58.601 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2176 | 2569 | 2.325583 | TAAATCGGTCCATGCCTGAC | 57.674 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2212 | 2654 | 2.033294 | GCCATGCCCTAGCTAGCC | 59.967 | 66.667 | 15.74 | 8.77 | 40.80 | 3.93 |
2281 | 2723 | 1.879380 | TGCACAAGACAGCATTGTACC | 59.121 | 47.619 | 0.00 | 0.00 | 38.80 | 3.34 |
2444 | 2886 | 3.067106 | TCGTCCTTGAAAGAATCTGTGC | 58.933 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2552 | 2995 | 2.611751 | TCATTCAACAACTGTCCACGTG | 59.388 | 45.455 | 9.08 | 9.08 | 0.00 | 4.49 |
2620 | 3063 | 1.491668 | TAGCTACATCTCCCCGCAAA | 58.508 | 50.000 | 0.00 | 0.00 | 0.00 | 3.68 |
2623 | 3066 | 1.344763 | ACATTAGCTACATCTCCCCGC | 59.655 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
2624 | 3067 | 3.753294 | AACATTAGCTACATCTCCCCG | 57.247 | 47.619 | 0.00 | 0.00 | 0.00 | 5.73 |
2758 | 3210 | 5.832539 | AATCGATGGGACCTATCTGAAAT | 57.167 | 39.130 | 15.20 | 6.09 | 0.00 | 2.17 |
2759 | 3211 | 6.740944 | TTAATCGATGGGACCTATCTGAAA | 57.259 | 37.500 | 15.20 | 5.02 | 0.00 | 2.69 |
3031 | 3483 | 6.560003 | ATTTTCCTGTGTTTTCCTTTTCCT | 57.440 | 33.333 | 0.00 | 0.00 | 0.00 | 3.36 |
3104 | 3556 | 4.044065 | ACCAGGGACAAATGTATCTTTCCA | 59.956 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
3269 | 3721 | 5.663106 | ACTCTGATTAGGCCACTTTCTGATA | 59.337 | 40.000 | 5.01 | 0.00 | 0.00 | 2.15 |
3323 | 3775 | 9.317827 | ACTACTACCCAAGAGAGTGTTTTATTA | 57.682 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
3342 | 3794 | 5.693961 | AGGGTCCTTCTAGCTAACTACTAC | 58.306 | 45.833 | 0.00 | 0.00 | 0.00 | 2.73 |
3343 | 3795 | 5.671276 | AGAGGGTCCTTCTAGCTAACTACTA | 59.329 | 44.000 | 0.63 | 0.00 | 0.00 | 1.82 |
3344 | 3796 | 4.479425 | AGAGGGTCCTTCTAGCTAACTACT | 59.521 | 45.833 | 0.63 | 0.00 | 0.00 | 2.57 |
3791 | 4243 | 7.721409 | TTTATGTTACCATAAAAAGGACCCC | 57.279 | 36.000 | 3.19 | 0.00 | 45.81 | 4.95 |
4732 | 5187 | 8.637986 | AGATCAATGCCTTTAACAGTTTGTTTA | 58.362 | 29.630 | 0.00 | 0.00 | 41.45 | 2.01 |
4916 | 5373 | 6.540914 | TGGAGTGTCTTGGTAAACTAGTTTTG | 59.459 | 38.462 | 25.07 | 11.13 | 34.23 | 2.44 |
5226 | 5683 | 2.759973 | ATCTCTGGGAGCGCCGAA | 60.760 | 61.111 | 2.29 | 0.00 | 33.83 | 4.30 |
5313 | 5770 | 2.982130 | CTGTGGCTTAGGCGGAGT | 59.018 | 61.111 | 0.40 | 0.00 | 39.81 | 3.85 |
5340 | 5797 | 3.002042 | CGTCATCATCAACATGGAAGAGC | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 4.09 |
5492 | 5949 | 9.588096 | ACACTACACCATCATAATACTGAGATA | 57.412 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
5515 | 5972 | 1.330521 | GTCATGGACACACACACACAC | 59.669 | 52.381 | 0.00 | 0.00 | 32.09 | 3.82 |
5516 | 5973 | 1.662517 | GTCATGGACACACACACACA | 58.337 | 50.000 | 0.00 | 0.00 | 32.09 | 3.72 |
5791 | 6248 | 7.448161 | TCCAATCATATGTATTTTCTTGCGGAT | 59.552 | 33.333 | 1.90 | 0.00 | 0.00 | 4.18 |
5867 | 6325 | 6.590292 | GCTCGAGCTAATATATGCCTTAAACA | 59.410 | 38.462 | 29.88 | 0.00 | 38.21 | 2.83 |
5883 | 6341 | 2.134287 | GGGGATGTGGCTCGAGCTA | 61.134 | 63.158 | 34.46 | 28.17 | 41.70 | 3.32 |
6024 | 6482 | 4.423625 | AGAAACTCAATCTAATCCCCCG | 57.576 | 45.455 | 0.00 | 0.00 | 0.00 | 5.73 |
6254 | 6715 | 2.037121 | TCGATGCCTTTGTCAGTGAAGA | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
6265 | 6726 | 2.012673 | GATGTGCTCTTCGATGCCTTT | 58.987 | 47.619 | 0.00 | 0.00 | 0.00 | 3.11 |
6283 | 6744 | 0.322975 | GTGCTATGGGATCAGCGGAT | 59.677 | 55.000 | 0.00 | 0.00 | 40.79 | 4.18 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.