Multiple sequence alignment - TraesCS1A01G105200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G105200 | chr1A | 100.000 | 2414 | 0 | 0 | 1 | 2414 | 100545611 | 100548024 | 0.000000e+00 | 4458 |
1 | TraesCS1A01G105200 | chr3D | 92.695 | 2341 | 151 | 8 | 1 | 2325 | 349444795 | 349442459 | 0.000000e+00 | 3358 |
2 | TraesCS1A01G105200 | chr3D | 93.412 | 1791 | 109 | 5 | 548 | 2332 | 415199312 | 415197525 | 0.000000e+00 | 2645 |
3 | TraesCS1A01G105200 | chr3D | 89.562 | 1667 | 127 | 24 | 1 | 1660 | 356669826 | 356671452 | 0.000000e+00 | 2071 |
4 | TraesCS1A01G105200 | chr3D | 93.548 | 93 | 5 | 1 | 2323 | 2414 | 172948234 | 172948142 | 1.160000e-28 | 137 |
5 | TraesCS1A01G105200 | chr5D | 92.659 | 2343 | 147 | 14 | 1 | 2324 | 192526200 | 192523864 | 0.000000e+00 | 3350 |
6 | TraesCS1A01G105200 | chr5D | 89.194 | 1712 | 130 | 26 | 1 | 1697 | 434733265 | 434734936 | 0.000000e+00 | 2085 |
7 | TraesCS1A01G105200 | chr1D | 92.624 | 2332 | 144 | 11 | 1 | 2318 | 194854479 | 194852162 | 0.000000e+00 | 3328 |
8 | TraesCS1A01G105200 | chr6B | 91.966 | 2029 | 140 | 15 | 1 | 2022 | 144742065 | 144744077 | 0.000000e+00 | 2822 |
9 | TraesCS1A01G105200 | chr6B | 88.403 | 1716 | 140 | 27 | 1 | 1700 | 436047352 | 436049024 | 0.000000e+00 | 2012 |
10 | TraesCS1A01G105200 | chr4D | 94.244 | 1772 | 96 | 4 | 548 | 2319 | 65498831 | 65497066 | 0.000000e+00 | 2702 |
11 | TraesCS1A01G105200 | chr4D | 89.556 | 1666 | 126 | 25 | 1 | 1660 | 63531850 | 63533473 | 0.000000e+00 | 2069 |
12 | TraesCS1A01G105200 | chr4D | 89.309 | 1665 | 126 | 21 | 1 | 1660 | 14237822 | 14239439 | 0.000000e+00 | 2041 |
13 | TraesCS1A01G105200 | chr2D | 94.055 | 1783 | 97 | 6 | 548 | 2330 | 260387532 | 260385759 | 0.000000e+00 | 2697 |
14 | TraesCS1A01G105200 | chr2D | 93.427 | 1780 | 111 | 5 | 548 | 2323 | 471597008 | 471595231 | 0.000000e+00 | 2634 |
15 | TraesCS1A01G105200 | chr2D | 89.676 | 1666 | 124 | 26 | 1 | 1660 | 409562429 | 409560806 | 0.000000e+00 | 2080 |
16 | TraesCS1A01G105200 | chr6D | 93.525 | 1776 | 107 | 3 | 548 | 2323 | 273131113 | 273132880 | 0.000000e+00 | 2636 |
17 | TraesCS1A01G105200 | chr7B | 88.533 | 1718 | 137 | 30 | 1 | 1700 | 534551243 | 534549568 | 0.000000e+00 | 2026 |
18 | TraesCS1A01G105200 | chr7B | 93.617 | 94 | 4 | 2 | 2323 | 2414 | 387037398 | 387037305 | 3.240000e-29 | 139 |
19 | TraesCS1A01G105200 | chr5B | 88.435 | 1712 | 140 | 24 | 1 | 1700 | 348893772 | 348892107 | 0.000000e+00 | 2012 |
20 | TraesCS1A01G105200 | chr4B | 94.565 | 92 | 5 | 0 | 2323 | 2414 | 425986643 | 425986552 | 2.500000e-30 | 143 |
21 | TraesCS1A01G105200 | chr4B | 93.548 | 93 | 5 | 1 | 2323 | 2414 | 206897719 | 206897811 | 1.160000e-28 | 137 |
22 | TraesCS1A01G105200 | chr7A | 93.548 | 93 | 5 | 1 | 2323 | 2414 | 200499601 | 200499693 | 1.160000e-28 | 137 |
23 | TraesCS1A01G105200 | chr7A | 93.548 | 93 | 5 | 1 | 2323 | 2414 | 423573075 | 423573167 | 1.160000e-28 | 137 |
24 | TraesCS1A01G105200 | chr2B | 93.548 | 93 | 5 | 1 | 2323 | 2414 | 387227089 | 387227181 | 1.160000e-28 | 137 |
25 | TraesCS1A01G105200 | chr2A | 93.478 | 92 | 6 | 0 | 2323 | 2414 | 525636602 | 525636693 | 1.160000e-28 | 137 |
26 | TraesCS1A01G105200 | chr1B | 93.548 | 93 | 4 | 2 | 2323 | 2414 | 334952264 | 334952173 | 1.160000e-28 | 137 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G105200 | chr1A | 100545611 | 100548024 | 2413 | False | 4458 | 4458 | 100.000 | 1 | 2414 | 1 | chr1A.!!$F1 | 2413 |
1 | TraesCS1A01G105200 | chr3D | 349442459 | 349444795 | 2336 | True | 3358 | 3358 | 92.695 | 1 | 2325 | 1 | chr3D.!!$R2 | 2324 |
2 | TraesCS1A01G105200 | chr3D | 415197525 | 415199312 | 1787 | True | 2645 | 2645 | 93.412 | 548 | 2332 | 1 | chr3D.!!$R3 | 1784 |
3 | TraesCS1A01G105200 | chr3D | 356669826 | 356671452 | 1626 | False | 2071 | 2071 | 89.562 | 1 | 1660 | 1 | chr3D.!!$F1 | 1659 |
4 | TraesCS1A01G105200 | chr5D | 192523864 | 192526200 | 2336 | True | 3350 | 3350 | 92.659 | 1 | 2324 | 1 | chr5D.!!$R1 | 2323 |
5 | TraesCS1A01G105200 | chr5D | 434733265 | 434734936 | 1671 | False | 2085 | 2085 | 89.194 | 1 | 1697 | 1 | chr5D.!!$F1 | 1696 |
6 | TraesCS1A01G105200 | chr1D | 194852162 | 194854479 | 2317 | True | 3328 | 3328 | 92.624 | 1 | 2318 | 1 | chr1D.!!$R1 | 2317 |
7 | TraesCS1A01G105200 | chr6B | 144742065 | 144744077 | 2012 | False | 2822 | 2822 | 91.966 | 1 | 2022 | 1 | chr6B.!!$F1 | 2021 |
8 | TraesCS1A01G105200 | chr6B | 436047352 | 436049024 | 1672 | False | 2012 | 2012 | 88.403 | 1 | 1700 | 1 | chr6B.!!$F2 | 1699 |
9 | TraesCS1A01G105200 | chr4D | 65497066 | 65498831 | 1765 | True | 2702 | 2702 | 94.244 | 548 | 2319 | 1 | chr4D.!!$R1 | 1771 |
10 | TraesCS1A01G105200 | chr4D | 63531850 | 63533473 | 1623 | False | 2069 | 2069 | 89.556 | 1 | 1660 | 1 | chr4D.!!$F2 | 1659 |
11 | TraesCS1A01G105200 | chr4D | 14237822 | 14239439 | 1617 | False | 2041 | 2041 | 89.309 | 1 | 1660 | 1 | chr4D.!!$F1 | 1659 |
12 | TraesCS1A01G105200 | chr2D | 260385759 | 260387532 | 1773 | True | 2697 | 2697 | 94.055 | 548 | 2330 | 1 | chr2D.!!$R1 | 1782 |
13 | TraesCS1A01G105200 | chr2D | 471595231 | 471597008 | 1777 | True | 2634 | 2634 | 93.427 | 548 | 2323 | 1 | chr2D.!!$R3 | 1775 |
14 | TraesCS1A01G105200 | chr2D | 409560806 | 409562429 | 1623 | True | 2080 | 2080 | 89.676 | 1 | 1660 | 1 | chr2D.!!$R2 | 1659 |
15 | TraesCS1A01G105200 | chr6D | 273131113 | 273132880 | 1767 | False | 2636 | 2636 | 93.525 | 548 | 2323 | 1 | chr6D.!!$F1 | 1775 |
16 | TraesCS1A01G105200 | chr7B | 534549568 | 534551243 | 1675 | True | 2026 | 2026 | 88.533 | 1 | 1700 | 1 | chr7B.!!$R2 | 1699 |
17 | TraesCS1A01G105200 | chr5B | 348892107 | 348893772 | 1665 | True | 2012 | 2012 | 88.435 | 1 | 1700 | 1 | chr5B.!!$R1 | 1699 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
545 | 563 | 0.107897 | TGTGAACGTGTTGGCTCTGT | 60.108 | 50.0 | 0.0 | 0.0 | 0.0 | 3.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1761 | 1838 | 0.465705 | GCATGCACTAGCTAGGTGGA | 59.534 | 55.0 | 24.35 | 19.44 | 42.74 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 2.885135 | TGGTGCTCATTTGACCTCAT | 57.115 | 45.000 | 0.00 | 0.00 | 0.00 | 2.90 |
30 | 31 | 1.234821 | TTTGACCTCATTCGTGCCAC | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
130 | 138 | 5.242838 | ACAGCGAAGGTTTCATATTTTTCCA | 59.757 | 36.000 | 0.00 | 0.00 | 33.74 | 3.53 |
222 | 233 | 1.004200 | CGCGGGGTTTCACCTAACT | 60.004 | 57.895 | 0.00 | 0.00 | 38.64 | 2.24 |
230 | 241 | 3.514309 | GGGTTTCACCTAACTCTAGCTCA | 59.486 | 47.826 | 0.00 | 0.00 | 38.64 | 4.26 |
236 | 247 | 3.868077 | CACCTAACTCTAGCTCACAATGC | 59.132 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
242 | 253 | 0.393402 | CTAGCTCACAATGCCAGCCA | 60.393 | 55.000 | 0.00 | 0.00 | 33.28 | 4.75 |
283 | 294 | 3.068732 | CCAAGCGACAATCCTCAGATCTA | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 1.98 |
353 | 364 | 0.904865 | TGGATCACAAGGACGGCTCT | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 4.09 |
362 | 373 | 1.741770 | GGACGGCTCTGCATCGTTT | 60.742 | 57.895 | 0.00 | 0.00 | 37.25 | 3.60 |
373 | 384 | 1.024579 | GCATCGTTTGATCGTGGGGT | 61.025 | 55.000 | 0.00 | 0.00 | 30.49 | 4.95 |
433 | 444 | 2.438434 | CCCACCATTGACTCCGCC | 60.438 | 66.667 | 0.00 | 0.00 | 0.00 | 6.13 |
434 | 445 | 2.350895 | CCACCATTGACTCCGCCA | 59.649 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
441 | 454 | 2.351738 | CCATTGACTCCGCCAGAAAAAC | 60.352 | 50.000 | 0.00 | 0.00 | 0.00 | 2.43 |
542 | 560 | 2.553079 | TTTTGTGAACGTGTTGGCTC | 57.447 | 45.000 | 0.00 | 0.00 | 0.00 | 4.70 |
544 | 562 | 1.013596 | TTGTGAACGTGTTGGCTCTG | 58.986 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
545 | 563 | 0.107897 | TGTGAACGTGTTGGCTCTGT | 60.108 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
546 | 564 | 1.137282 | TGTGAACGTGTTGGCTCTGTA | 59.863 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
547 | 565 | 2.224185 | TGTGAACGTGTTGGCTCTGTAT | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 2.29 |
556 | 587 | 4.990426 | GTGTTGGCTCTGTATTTTTGCATT | 59.010 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
595 | 626 | 3.064545 | GTGAATGTGCTGGCTCTGTATTC | 59.935 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
606 | 637 | 3.001736 | GGCTCTGTATTCTTGCATCGTTC | 59.998 | 47.826 | 0.00 | 0.00 | 0.00 | 3.95 |
607 | 638 | 3.868077 | GCTCTGTATTCTTGCATCGTTCT | 59.132 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
613 | 644 | 7.224753 | TCTGTATTCTTGCATCGTTCTAAATCC | 59.775 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
617 | 648 | 6.363577 | TCTTGCATCGTTCTAAATCCATTC | 57.636 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
629 | 660 | 6.345298 | TCTAAATCCATTCACATTGCGTAGA | 58.655 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
691 | 723 | 4.314121 | TGCAAAATGGCCACAAACTATTC | 58.686 | 39.130 | 8.16 | 0.00 | 0.00 | 1.75 |
780 | 813 | 9.964253 | GCTTCTTTTTCTTCTTCTTTTTCAAAG | 57.036 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
793 | 826 | 1.698506 | TTCAAAGCACCGTTTCCCAT | 58.301 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
805 | 838 | 1.877443 | GTTTCCCATGCGTGTACACTT | 59.123 | 47.619 | 23.01 | 5.85 | 0.00 | 3.16 |
853 | 886 | 3.499745 | GGGTTACTTCACATTTGACCCCT | 60.500 | 47.826 | 0.00 | 0.00 | 30.02 | 4.79 |
956 | 1009 | 0.255318 | CTCTCTGCCATCTGCCCTTT | 59.745 | 55.000 | 0.00 | 0.00 | 40.16 | 3.11 |
977 | 1030 | 0.241213 | TGCTCTTCGACCACTTCTCG | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1081 | 1136 | 2.399611 | GCATGTACGTTGAGCGCC | 59.600 | 61.111 | 2.29 | 0.00 | 46.11 | 6.53 |
1083 | 1138 | 2.508439 | ATGTACGTTGAGCGCCCG | 60.508 | 61.111 | 2.29 | 4.05 | 46.11 | 6.13 |
1098 | 1155 | 4.373116 | CCGCTACGTGTGTGGGCT | 62.373 | 66.667 | 13.11 | 0.00 | 0.00 | 5.19 |
1392 | 1449 | 1.329256 | CTCTTCCGTACCCCATCGAT | 58.671 | 55.000 | 0.00 | 0.00 | 0.00 | 3.59 |
1399 | 1456 | 1.409790 | CGTACCCCATCGATAACACCA | 59.590 | 52.381 | 0.00 | 0.00 | 0.00 | 4.17 |
1563 | 1633 | 2.385013 | GGCTTGTTGGCCCTTTTATG | 57.615 | 50.000 | 0.00 | 0.00 | 45.92 | 1.90 |
1649 | 1719 | 2.045708 | TGCTATGGGCTTGTTGGCG | 61.046 | 57.895 | 0.00 | 0.00 | 42.84 | 5.69 |
1672 | 1749 | 6.366061 | GCGCTATCTACATGTATGTTGATTGA | 59.634 | 38.462 | 23.17 | 10.92 | 46.07 | 2.57 |
1761 | 1838 | 8.574251 | TTCTTACACAAGCCACAAATATGTAT | 57.426 | 30.769 | 0.00 | 0.00 | 37.82 | 2.29 |
1784 | 1861 | 1.278985 | ACCTAGCTAGTGCATGCAACA | 59.721 | 47.619 | 24.58 | 12.21 | 42.74 | 3.33 |
1917 | 1995 | 0.892063 | GCGAGAAGAGAGGAACCAGT | 59.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1943 | 2021 | 4.794439 | CCGTCGCTGCATCCGTGA | 62.794 | 66.667 | 0.00 | 0.00 | 0.00 | 4.35 |
1985 | 2068 | 0.107993 | CTCGGTCAGTGCATCATGGT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 3.55 |
1989 | 2072 | 1.378911 | TCAGTGCATCATGGTGGCC | 60.379 | 57.895 | 8.33 | 0.00 | 0.00 | 5.36 |
2039 | 2125 | 3.367743 | CAACGCATGCAGGCAGGT | 61.368 | 61.111 | 24.53 | 11.25 | 0.00 | 4.00 |
2058 | 2144 | 2.093553 | GGTTTGTTGGGTGCATGCATAT | 60.094 | 45.455 | 25.64 | 0.00 | 0.00 | 1.78 |
2073 | 2159 | 2.131183 | GCATATCAGGCTTCTGTCGTC | 58.869 | 52.381 | 0.00 | 0.00 | 39.45 | 4.20 |
2106 | 2193 | 0.800012 | GCGTTTAATGCAAGGGACGA | 59.200 | 50.000 | 16.69 | 0.00 | 32.73 | 4.20 |
2128 | 2215 | 1.560611 | CCAATGAAACCATGGCCCAAT | 59.439 | 47.619 | 13.04 | 0.00 | 0.00 | 3.16 |
2143 | 2230 | 1.468520 | CCCAATGGTTGAACAGCTACG | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
2201 | 2288 | 4.129737 | CACTGACCCGACGGCGAT | 62.130 | 66.667 | 15.16 | 0.00 | 40.82 | 4.58 |
2250 | 2337 | 0.252239 | GGCAAGGGAGTGGGGAAAAT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 1.82 |
2355 | 2442 | 9.490379 | AATTGTAATAGTAGGTTCCGATTCATC | 57.510 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
2356 | 2443 | 7.591421 | TGTAATAGTAGGTTCCGATTCATCA | 57.409 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2357 | 2444 | 8.190326 | TGTAATAGTAGGTTCCGATTCATCAT | 57.810 | 34.615 | 0.00 | 0.00 | 0.00 | 2.45 |
2358 | 2445 | 9.304335 | TGTAATAGTAGGTTCCGATTCATCATA | 57.696 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
2361 | 2448 | 9.712305 | AATAGTAGGTTCCGATTCATCATAAAG | 57.288 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
2362 | 2449 | 5.992217 | AGTAGGTTCCGATTCATCATAAAGC | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2363 | 2450 | 5.041191 | AGGTTCCGATTCATCATAAAGCT | 57.959 | 39.130 | 0.00 | 0.00 | 0.00 | 3.74 |
2364 | 2451 | 5.440610 | AGGTTCCGATTCATCATAAAGCTT | 58.559 | 37.500 | 0.00 | 0.00 | 0.00 | 3.74 |
2365 | 2452 | 5.888161 | AGGTTCCGATTCATCATAAAGCTTT | 59.112 | 36.000 | 17.30 | 17.30 | 0.00 | 3.51 |
2366 | 2453 | 6.038714 | AGGTTCCGATTCATCATAAAGCTTTC | 59.961 | 38.462 | 16.57 | 0.00 | 0.00 | 2.62 |
2367 | 2454 | 6.038714 | GGTTCCGATTCATCATAAAGCTTTCT | 59.961 | 38.462 | 16.57 | 2.47 | 0.00 | 2.52 |
2368 | 2455 | 7.226720 | GGTTCCGATTCATCATAAAGCTTTCTA | 59.773 | 37.037 | 16.57 | 0.00 | 0.00 | 2.10 |
2369 | 2456 | 7.953158 | TCCGATTCATCATAAAGCTTTCTAG | 57.047 | 36.000 | 16.57 | 7.03 | 0.00 | 2.43 |
2370 | 2457 | 6.931281 | TCCGATTCATCATAAAGCTTTCTAGG | 59.069 | 38.462 | 16.57 | 0.52 | 0.00 | 3.02 |
2371 | 2458 | 6.148480 | CCGATTCATCATAAAGCTTTCTAGGG | 59.852 | 42.308 | 16.57 | 4.43 | 0.00 | 3.53 |
2372 | 2459 | 6.931281 | CGATTCATCATAAAGCTTTCTAGGGA | 59.069 | 38.462 | 16.57 | 6.82 | 0.00 | 4.20 |
2373 | 2460 | 7.605691 | CGATTCATCATAAAGCTTTCTAGGGAT | 59.394 | 37.037 | 16.57 | 9.61 | 0.00 | 3.85 |
2374 | 2461 | 9.294614 | GATTCATCATAAAGCTTTCTAGGGATT | 57.705 | 33.333 | 16.57 | 6.15 | 0.00 | 3.01 |
2375 | 2462 | 8.455903 | TTCATCATAAAGCTTTCTAGGGATTG | 57.544 | 34.615 | 16.57 | 4.54 | 0.00 | 2.67 |
2376 | 2463 | 7.805163 | TCATCATAAAGCTTTCTAGGGATTGA | 58.195 | 34.615 | 16.57 | 6.71 | 0.00 | 2.57 |
2377 | 2464 | 8.274322 | TCATCATAAAGCTTTCTAGGGATTGAA | 58.726 | 33.333 | 16.57 | 0.00 | 0.00 | 2.69 |
2378 | 2465 | 8.906867 | CATCATAAAGCTTTCTAGGGATTGAAA | 58.093 | 33.333 | 16.57 | 0.00 | 0.00 | 2.69 |
2379 | 2466 | 8.281212 | TCATAAAGCTTTCTAGGGATTGAAAC | 57.719 | 34.615 | 16.57 | 0.00 | 0.00 | 2.78 |
2380 | 2467 | 8.109634 | TCATAAAGCTTTCTAGGGATTGAAACT | 58.890 | 33.333 | 16.57 | 0.00 | 0.00 | 2.66 |
2381 | 2468 | 8.743714 | CATAAAGCTTTCTAGGGATTGAAACTT | 58.256 | 33.333 | 16.57 | 0.00 | 31.59 | 2.66 |
2382 | 2469 | 6.825944 | AAGCTTTCTAGGGATTGAAACTTC | 57.174 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2383 | 2470 | 5.257262 | AGCTTTCTAGGGATTGAAACTTCC | 58.743 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2384 | 2471 | 5.010282 | GCTTTCTAGGGATTGAAACTTCCA | 58.990 | 41.667 | 0.00 | 0.00 | 33.43 | 3.53 |
2385 | 2472 | 5.476945 | GCTTTCTAGGGATTGAAACTTCCAA | 59.523 | 40.000 | 0.00 | 0.00 | 33.43 | 3.53 |
2386 | 2473 | 6.570571 | GCTTTCTAGGGATTGAAACTTCCAAC | 60.571 | 42.308 | 0.00 | 0.00 | 33.43 | 3.77 |
2387 | 2474 | 5.843019 | TCTAGGGATTGAAACTTCCAACT | 57.157 | 39.130 | 0.00 | 0.00 | 33.43 | 3.16 |
2388 | 2475 | 5.805728 | TCTAGGGATTGAAACTTCCAACTC | 58.194 | 41.667 | 0.00 | 0.00 | 33.43 | 3.01 |
2389 | 2476 | 3.767711 | AGGGATTGAAACTTCCAACTCC | 58.232 | 45.455 | 0.00 | 0.00 | 33.43 | 3.85 |
2390 | 2477 | 3.140144 | AGGGATTGAAACTTCCAACTCCA | 59.860 | 43.478 | 0.00 | 0.00 | 33.43 | 3.86 |
2391 | 2478 | 3.507622 | GGGATTGAAACTTCCAACTCCAG | 59.492 | 47.826 | 0.00 | 0.00 | 33.43 | 3.86 |
2392 | 2479 | 4.145052 | GGATTGAAACTTCCAACTCCAGT | 58.855 | 43.478 | 0.00 | 0.00 | 31.99 | 4.00 |
2393 | 2480 | 4.584743 | GGATTGAAACTTCCAACTCCAGTT | 59.415 | 41.667 | 0.00 | 0.00 | 39.12 | 3.16 |
2394 | 2481 | 5.069119 | GGATTGAAACTTCCAACTCCAGTTT | 59.931 | 40.000 | 0.00 | 0.00 | 42.23 | 2.66 |
2395 | 2482 | 5.993748 | TTGAAACTTCCAACTCCAGTTTT | 57.006 | 34.783 | 0.00 | 0.00 | 40.15 | 2.43 |
2396 | 2483 | 5.576447 | TGAAACTTCCAACTCCAGTTTTC | 57.424 | 39.130 | 0.00 | 0.00 | 40.15 | 2.29 |
2397 | 2484 | 5.261216 | TGAAACTTCCAACTCCAGTTTTCT | 58.739 | 37.500 | 0.00 | 0.00 | 40.15 | 2.52 |
2398 | 2485 | 5.714806 | TGAAACTTCCAACTCCAGTTTTCTT | 59.285 | 36.000 | 0.00 | 0.00 | 40.15 | 2.52 |
2399 | 2486 | 5.836821 | AACTTCCAACTCCAGTTTTCTTC | 57.163 | 39.130 | 0.00 | 0.00 | 35.83 | 2.87 |
2400 | 2487 | 4.855340 | ACTTCCAACTCCAGTTTTCTTCA | 58.145 | 39.130 | 0.00 | 0.00 | 35.83 | 3.02 |
2401 | 2488 | 5.261216 | ACTTCCAACTCCAGTTTTCTTCAA | 58.739 | 37.500 | 0.00 | 0.00 | 35.83 | 2.69 |
2402 | 2489 | 5.714806 | ACTTCCAACTCCAGTTTTCTTCAAA | 59.285 | 36.000 | 0.00 | 0.00 | 35.83 | 2.69 |
2403 | 2490 | 6.381133 | ACTTCCAACTCCAGTTTTCTTCAAAT | 59.619 | 34.615 | 0.00 | 0.00 | 35.83 | 2.32 |
2404 | 2491 | 6.147864 | TCCAACTCCAGTTTTCTTCAAATG | 57.852 | 37.500 | 0.00 | 0.00 | 35.83 | 2.32 |
2405 | 2492 | 5.890985 | TCCAACTCCAGTTTTCTTCAAATGA | 59.109 | 36.000 | 0.00 | 0.00 | 35.83 | 2.57 |
2406 | 2493 | 6.550854 | TCCAACTCCAGTTTTCTTCAAATGAT | 59.449 | 34.615 | 0.00 | 0.00 | 35.83 | 2.45 |
2407 | 2494 | 7.069826 | TCCAACTCCAGTTTTCTTCAAATGATT | 59.930 | 33.333 | 0.00 | 0.00 | 35.83 | 2.57 |
2408 | 2495 | 7.712205 | CCAACTCCAGTTTTCTTCAAATGATTT | 59.288 | 33.333 | 0.00 | 0.00 | 35.83 | 2.17 |
2409 | 2496 | 8.758715 | CAACTCCAGTTTTCTTCAAATGATTTC | 58.241 | 33.333 | 0.00 | 0.00 | 35.83 | 2.17 |
2410 | 2497 | 8.010733 | ACTCCAGTTTTCTTCAAATGATTTCA | 57.989 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
2411 | 2498 | 8.645110 | ACTCCAGTTTTCTTCAAATGATTTCAT | 58.355 | 29.630 | 0.00 | 0.00 | 38.41 | 2.57 |
2412 | 2499 | 9.136952 | CTCCAGTTTTCTTCAAATGATTTCATC | 57.863 | 33.333 | 0.00 | 0.00 | 35.10 | 2.92 |
2413 | 2500 | 8.640651 | TCCAGTTTTCTTCAAATGATTTCATCA | 58.359 | 29.630 | 0.00 | 0.00 | 44.55 | 3.07 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 0.475044 | AAAACCCTAGGTGGCACGAA | 59.525 | 50.000 | 12.17 | 0.61 | 35.34 | 3.85 |
30 | 31 | 6.014669 | TGGTCATTTTCATGAAAAACCCTAGG | 60.015 | 38.462 | 32.63 | 17.80 | 41.30 | 3.02 |
139 | 149 | 6.969473 | GGCTTTGACTGAGCATAACTAATTTC | 59.031 | 38.462 | 0.00 | 0.00 | 41.89 | 2.17 |
215 | 226 | 3.118592 | GGCATTGTGAGCTAGAGTTAGGT | 60.119 | 47.826 | 0.00 | 0.00 | 40.20 | 3.08 |
222 | 233 | 0.107508 | GGCTGGCATTGTGAGCTAGA | 60.108 | 55.000 | 2.64 | 0.00 | 42.44 | 2.43 |
230 | 241 | 0.820891 | GATCGGATGGCTGGCATTGT | 60.821 | 55.000 | 18.29 | 4.90 | 0.00 | 2.71 |
236 | 247 | 0.390340 | CGGTATGATCGGATGGCTGG | 60.390 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
242 | 253 | 1.209383 | CGCGACGGTATGATCGGAT | 59.791 | 57.895 | 0.00 | 0.00 | 38.78 | 4.18 |
283 | 294 | 5.663556 | CCCACCTAATTCCTTCTAGAAGACT | 59.336 | 44.000 | 30.17 | 14.96 | 40.79 | 3.24 |
331 | 342 | 0.605319 | GCCGTCCTTGTGATCCAACA | 60.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.33 |
353 | 364 | 1.024046 | CCCCACGATCAAACGATGCA | 61.024 | 55.000 | 0.00 | 0.00 | 37.03 | 3.96 |
362 | 373 | 1.904771 | GTGGATCACCCCACGATCA | 59.095 | 57.895 | 0.00 | 0.00 | 46.00 | 2.92 |
373 | 384 | 1.063642 | AGGATCACCTCTCGTGGATCA | 60.064 | 52.381 | 0.00 | 0.00 | 44.13 | 2.92 |
433 | 444 | 4.694982 | GGGCCCAATAACAATGTTTTTCTG | 59.305 | 41.667 | 19.95 | 0.00 | 0.00 | 3.02 |
434 | 445 | 4.349342 | TGGGCCCAATAACAATGTTTTTCT | 59.651 | 37.500 | 26.33 | 0.00 | 0.00 | 2.52 |
441 | 454 | 3.262915 | TCCTTTTGGGCCCAATAACAATG | 59.737 | 43.478 | 37.41 | 23.44 | 40.87 | 2.82 |
523 | 541 | 2.088423 | AGAGCCAACACGTTCACAAAA | 58.912 | 42.857 | 0.00 | 0.00 | 0.00 | 2.44 |
527 | 545 | 1.860676 | TACAGAGCCAACACGTTCAC | 58.139 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
528 | 546 | 2.831685 | ATACAGAGCCAACACGTTCA | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
529 | 547 | 4.483476 | AAAATACAGAGCCAACACGTTC | 57.517 | 40.909 | 0.00 | 0.00 | 0.00 | 3.95 |
532 | 550 | 2.979813 | GCAAAAATACAGAGCCAACACG | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
533 | 551 | 3.976169 | TGCAAAAATACAGAGCCAACAC | 58.024 | 40.909 | 0.00 | 0.00 | 0.00 | 3.32 |
534 | 552 | 4.870123 | ATGCAAAAATACAGAGCCAACA | 57.130 | 36.364 | 0.00 | 0.00 | 0.00 | 3.33 |
535 | 553 | 4.990426 | ACAATGCAAAAATACAGAGCCAAC | 59.010 | 37.500 | 0.00 | 0.00 | 0.00 | 3.77 |
536 | 554 | 5.212532 | ACAATGCAAAAATACAGAGCCAA | 57.787 | 34.783 | 0.00 | 0.00 | 0.00 | 4.52 |
538 | 556 | 5.919196 | CAAACAATGCAAAAATACAGAGCC | 58.081 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
556 | 587 | 4.527509 | TTCACAAAAACCAGAGCAAACA | 57.472 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
595 | 626 | 5.967674 | GTGAATGGATTTAGAACGATGCAAG | 59.032 | 40.000 | 0.00 | 0.00 | 0.00 | 4.01 |
606 | 637 | 6.603237 | TCTACGCAATGTGAATGGATTTAG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
607 | 638 | 6.993786 | TTCTACGCAATGTGAATGGATTTA | 57.006 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
613 | 644 | 5.512788 | GGTCATTTTCTACGCAATGTGAATG | 59.487 | 40.000 | 0.00 | 0.00 | 32.96 | 2.67 |
617 | 648 | 4.418013 | TGGTCATTTTCTACGCAATGTG | 57.582 | 40.909 | 0.00 | 0.00 | 32.96 | 3.21 |
629 | 660 | 6.368805 | TGGCCCTTAAAAATTTGGTCATTTT | 58.631 | 32.000 | 0.00 | 0.00 | 37.86 | 1.82 |
663 | 695 | 3.804786 | TGTGGCCATTTTGCATGATAG | 57.195 | 42.857 | 9.72 | 0.00 | 0.00 | 2.08 |
780 | 813 | 3.361977 | ACGCATGGGAAACGGTGC | 61.362 | 61.111 | 17.76 | 0.00 | 37.83 | 5.01 |
793 | 826 | 0.315886 | ACATCGGAAGTGTACACGCA | 59.684 | 50.000 | 19.93 | 4.33 | 36.20 | 5.24 |
853 | 886 | 3.258372 | TGTTATTTGGCCGTGGCAATAAA | 59.742 | 39.130 | 13.76 | 10.80 | 46.84 | 1.40 |
977 | 1030 | 3.194062 | GCTGAGGATGTGCTAGAAGAAC | 58.806 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1081 | 1136 | 2.292794 | ATAGCCCACACACGTAGCGG | 62.293 | 60.000 | 0.00 | 0.00 | 0.00 | 5.52 |
1083 | 1138 | 2.035449 | TGATATAGCCCACACACGTAGC | 59.965 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1098 | 1155 | 1.968493 | GCGGTCCTCCACCTTGATATA | 59.032 | 52.381 | 0.00 | 0.00 | 44.21 | 0.86 |
1392 | 1449 | 0.830444 | ACTGCTCCTCCGTGGTGTTA | 60.830 | 55.000 | 0.00 | 0.00 | 37.07 | 2.41 |
1399 | 1456 | 2.286523 | CCCTTCACTGCTCCTCCGT | 61.287 | 63.158 | 0.00 | 0.00 | 0.00 | 4.69 |
1672 | 1749 | 6.890979 | AACAAAGCAAGCTCTCTAAGAAAT | 57.109 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
1761 | 1838 | 0.465705 | GCATGCACTAGCTAGGTGGA | 59.534 | 55.000 | 24.35 | 19.44 | 42.74 | 4.02 |
1812 | 1889 | 5.182487 | TCGCATCTGCACCTATTTTTCTAA | 58.818 | 37.500 | 2.72 | 0.00 | 42.21 | 2.10 |
1875 | 1953 | 4.988540 | CACACTTGTGTCCTCGATTTAGAA | 59.011 | 41.667 | 3.13 | 0.00 | 40.96 | 2.10 |
1917 | 1995 | 4.662961 | CAGCGACGGTCACTGCCA | 62.663 | 66.667 | 12.69 | 0.00 | 0.00 | 4.92 |
1957 | 2035 | 2.048222 | CTGACCGAGCCGCTTTCA | 60.048 | 61.111 | 0.00 | 0.00 | 0.00 | 2.69 |
2039 | 2125 | 2.830321 | TGATATGCATGCACCCAACAAA | 59.170 | 40.909 | 25.37 | 0.00 | 0.00 | 2.83 |
2058 | 2144 | 2.258591 | GCGACGACAGAAGCCTGA | 59.741 | 61.111 | 0.00 | 0.00 | 43.02 | 3.86 |
2106 | 2193 | 0.909133 | GGGCCATGGTTTCATTGGGT | 60.909 | 55.000 | 14.67 | 0.00 | 0.00 | 4.51 |
2112 | 2199 | 2.681348 | CCATTGGGCCATGGTTTCA | 58.319 | 52.632 | 20.49 | 6.66 | 33.39 | 2.69 |
2201 | 2288 | 1.068588 | CAGAAGAGGTCACAACGGACA | 59.931 | 52.381 | 0.00 | 0.00 | 39.59 | 4.02 |
2250 | 2337 | 4.338118 | CCCACACTCTTAACTTTTGCTCAA | 59.662 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
2331 | 2418 | 8.014070 | TGATGAATCGGAACCTACTATTACAA | 57.986 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
2335 | 2422 | 9.712305 | CTTTATGATGAATCGGAACCTACTATT | 57.288 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2336 | 2423 | 7.819900 | GCTTTATGATGAATCGGAACCTACTAT | 59.180 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
2337 | 2424 | 7.015292 | AGCTTTATGATGAATCGGAACCTACTA | 59.985 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
2338 | 2425 | 5.992217 | GCTTTATGATGAATCGGAACCTACT | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2339 | 2426 | 5.992217 | AGCTTTATGATGAATCGGAACCTAC | 59.008 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2340 | 2427 | 6.174720 | AGCTTTATGATGAATCGGAACCTA | 57.825 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
2341 | 2428 | 5.041191 | AGCTTTATGATGAATCGGAACCT | 57.959 | 39.130 | 0.00 | 0.00 | 0.00 | 3.50 |
2342 | 2429 | 5.757850 | AAGCTTTATGATGAATCGGAACC | 57.242 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
2343 | 2430 | 7.020914 | AGAAAGCTTTATGATGAATCGGAAC | 57.979 | 36.000 | 12.68 | 0.00 | 0.00 | 3.62 |
2344 | 2431 | 7.442364 | CCTAGAAAGCTTTATGATGAATCGGAA | 59.558 | 37.037 | 16.44 | 0.00 | 0.00 | 4.30 |
2345 | 2432 | 6.931281 | CCTAGAAAGCTTTATGATGAATCGGA | 59.069 | 38.462 | 16.44 | 0.00 | 0.00 | 4.55 |
2346 | 2433 | 6.148480 | CCCTAGAAAGCTTTATGATGAATCGG | 59.852 | 42.308 | 16.44 | 4.11 | 0.00 | 4.18 |
2347 | 2434 | 6.931281 | TCCCTAGAAAGCTTTATGATGAATCG | 59.069 | 38.462 | 16.44 | 0.00 | 0.00 | 3.34 |
2348 | 2435 | 8.860780 | ATCCCTAGAAAGCTTTATGATGAATC | 57.139 | 34.615 | 16.44 | 0.00 | 0.00 | 2.52 |
2349 | 2436 | 9.075678 | CAATCCCTAGAAAGCTTTATGATGAAT | 57.924 | 33.333 | 16.44 | 0.66 | 0.00 | 2.57 |
2350 | 2437 | 8.274322 | TCAATCCCTAGAAAGCTTTATGATGAA | 58.726 | 33.333 | 16.44 | 0.00 | 0.00 | 2.57 |
2351 | 2438 | 7.805163 | TCAATCCCTAGAAAGCTTTATGATGA | 58.195 | 34.615 | 16.44 | 9.49 | 0.00 | 2.92 |
2352 | 2439 | 8.455903 | TTCAATCCCTAGAAAGCTTTATGATG | 57.544 | 34.615 | 16.44 | 6.48 | 0.00 | 3.07 |
2353 | 2440 | 8.907885 | GTTTCAATCCCTAGAAAGCTTTATGAT | 58.092 | 33.333 | 16.44 | 7.81 | 34.69 | 2.45 |
2354 | 2441 | 8.109634 | AGTTTCAATCCCTAGAAAGCTTTATGA | 58.890 | 33.333 | 16.44 | 5.74 | 34.69 | 2.15 |
2355 | 2442 | 8.286191 | AGTTTCAATCCCTAGAAAGCTTTATG | 57.714 | 34.615 | 16.44 | 7.46 | 34.69 | 1.90 |
2356 | 2443 | 8.885693 | AAGTTTCAATCCCTAGAAAGCTTTAT | 57.114 | 30.769 | 12.68 | 12.12 | 34.69 | 1.40 |
2357 | 2444 | 7.393515 | GGAAGTTTCAATCCCTAGAAAGCTTTA | 59.606 | 37.037 | 12.68 | 0.00 | 34.69 | 1.85 |
2358 | 2445 | 6.209589 | GGAAGTTTCAATCCCTAGAAAGCTTT | 59.790 | 38.462 | 12.53 | 12.53 | 34.69 | 3.51 |
2359 | 2446 | 5.712446 | GGAAGTTTCAATCCCTAGAAAGCTT | 59.288 | 40.000 | 0.00 | 0.00 | 34.69 | 3.74 |
2360 | 2447 | 5.222130 | TGGAAGTTTCAATCCCTAGAAAGCT | 60.222 | 40.000 | 0.00 | 0.00 | 34.69 | 3.74 |
2361 | 2448 | 5.010282 | TGGAAGTTTCAATCCCTAGAAAGC | 58.990 | 41.667 | 0.00 | 0.00 | 34.69 | 3.51 |
2362 | 2449 | 6.717084 | AGTTGGAAGTTTCAATCCCTAGAAAG | 59.283 | 38.462 | 0.00 | 0.00 | 34.69 | 2.62 |
2363 | 2450 | 6.610830 | AGTTGGAAGTTTCAATCCCTAGAAA | 58.389 | 36.000 | 0.00 | 0.00 | 34.68 | 2.52 |
2364 | 2451 | 6.200878 | AGTTGGAAGTTTCAATCCCTAGAA | 57.799 | 37.500 | 0.00 | 0.00 | 34.68 | 2.10 |
2365 | 2452 | 5.280521 | GGAGTTGGAAGTTTCAATCCCTAGA | 60.281 | 44.000 | 0.00 | 0.00 | 34.68 | 2.43 |
2366 | 2453 | 4.944317 | GGAGTTGGAAGTTTCAATCCCTAG | 59.056 | 45.833 | 0.00 | 0.00 | 34.68 | 3.02 |
2367 | 2454 | 4.352595 | TGGAGTTGGAAGTTTCAATCCCTA | 59.647 | 41.667 | 16.52 | 3.68 | 34.68 | 3.53 |
2368 | 2455 | 3.140144 | TGGAGTTGGAAGTTTCAATCCCT | 59.860 | 43.478 | 16.52 | 4.66 | 34.68 | 4.20 |
2369 | 2456 | 3.496331 | TGGAGTTGGAAGTTTCAATCCC | 58.504 | 45.455 | 16.52 | 13.26 | 34.68 | 3.85 |
2370 | 2457 | 4.145052 | ACTGGAGTTGGAAGTTTCAATCC | 58.855 | 43.478 | 14.07 | 14.07 | 36.21 | 3.01 |
2371 | 2458 | 5.774498 | AACTGGAGTTGGAAGTTTCAATC | 57.226 | 39.130 | 0.00 | 0.00 | 36.80 | 2.67 |
2372 | 2459 | 6.381133 | AGAAAACTGGAGTTGGAAGTTTCAAT | 59.619 | 34.615 | 0.00 | 0.00 | 41.93 | 2.57 |
2373 | 2460 | 5.714806 | AGAAAACTGGAGTTGGAAGTTTCAA | 59.285 | 36.000 | 0.00 | 0.00 | 41.93 | 2.69 |
2374 | 2461 | 5.261216 | AGAAAACTGGAGTTGGAAGTTTCA | 58.739 | 37.500 | 0.92 | 0.00 | 41.93 | 2.69 |
2375 | 2462 | 5.836821 | AGAAAACTGGAGTTGGAAGTTTC | 57.163 | 39.130 | 0.92 | 0.00 | 41.93 | 2.78 |
2376 | 2463 | 5.714806 | TGAAGAAAACTGGAGTTGGAAGTTT | 59.285 | 36.000 | 0.00 | 0.00 | 44.01 | 2.66 |
2377 | 2464 | 5.261216 | TGAAGAAAACTGGAGTTGGAAGTT | 58.739 | 37.500 | 0.00 | 0.00 | 38.44 | 2.66 |
2378 | 2465 | 4.855340 | TGAAGAAAACTGGAGTTGGAAGT | 58.145 | 39.130 | 0.00 | 0.00 | 38.44 | 3.01 |
2379 | 2466 | 5.835113 | TTGAAGAAAACTGGAGTTGGAAG | 57.165 | 39.130 | 0.00 | 0.00 | 38.44 | 3.46 |
2380 | 2467 | 6.379703 | TCATTTGAAGAAAACTGGAGTTGGAA | 59.620 | 34.615 | 0.00 | 0.00 | 38.44 | 3.53 |
2381 | 2468 | 5.890985 | TCATTTGAAGAAAACTGGAGTTGGA | 59.109 | 36.000 | 0.00 | 0.00 | 38.44 | 3.53 |
2382 | 2469 | 6.147864 | TCATTTGAAGAAAACTGGAGTTGG | 57.852 | 37.500 | 0.00 | 0.00 | 38.44 | 3.77 |
2383 | 2470 | 8.652810 | AAATCATTTGAAGAAAACTGGAGTTG | 57.347 | 30.769 | 0.00 | 0.00 | 38.44 | 3.16 |
2384 | 2471 | 8.477256 | TGAAATCATTTGAAGAAAACTGGAGTT | 58.523 | 29.630 | 0.00 | 0.00 | 40.50 | 3.01 |
2385 | 2472 | 8.010733 | TGAAATCATTTGAAGAAAACTGGAGT | 57.989 | 30.769 | 0.00 | 0.00 | 0.00 | 3.85 |
2386 | 2473 | 9.136952 | GATGAAATCATTTGAAGAAAACTGGAG | 57.863 | 33.333 | 0.00 | 0.00 | 44.70 | 3.86 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.